Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p12)	13 (37%)	22	0.48868	1	0.7372	1	1	1	0.53711	1	1	1	0.68133	1	1	1	0.60678	1
Amp Peak  2(1q44)	20 (57%)	15	0.092215	1	0.32078	1	1	1	1	1	0.27283	1	0.08167	1	0.296	1	0.11671	1
Amp Peak  3(4q12)	12 (34%)	23	0.28899	1	0.48854	1	0.19681	1	0.18703	1	1	1	0.76486	1	0.47641	1	0.21715	1
Amp Peak  4(5p15.33)	13 (37%)	22	0.035415	1	0.31202	1	0.15712	1	0.57018	1	0.27752	1	0.5969	1	0.15181	1	0.10836	1
Amp Peak  5(5q35.3)	8 (23%)	27	0.040752	1	0.1009	1	0.21842	1	0.43509	1	1	1	0.59816	1	0.10389	1	0.14525	1
Amp Peak  6(8q11.21)	16 (46%)	19	0.31453	1	0.30636	1	1	1	0.39027	1	0.027223	1	0.062344	1	0.48883	1	0.90892	1
Amp Peak  7(11q13.3)	10 (29%)	25	0.26423	1	0.45819	1	0.59133	1	1	1	0.42928	1	0.48478	1	0.69739	1	0.089857	1
Amp Peak  8(11q13.3)	10 (29%)	25	0.26423	1	0.45819	1	0.59133	1	1	1	0.42928	1	0.48478	1	0.69739	1	0.089857	1
Amp Peak  9(12q14.1)	12 (34%)	23	0.28899	1	0.48854	1	0.15712	1	0.57018	1	0.24922	1	0.50043	1	0.47641	1	0.43857	1
Amp Peak 10(17q25.3)	16 (46%)	19	0.31453	1	0.73378	1	1	1	0.8483	1	0.73066	1	0.54058	1	0.73794	1	0.1597	1
Amp Peak 11(22q13.1)	17 (49%)	18	0.18114	1	0.17558	1	1	1	0.39027	1	0.28175	1	0.052738	1	1	1	0.27022	1
Amp Peak 12(Xq28)	10 (29%)	25	0.0003443	0.0551	0.001568	0.249	0.037926	1	0.07082	1	0.10739	1	0.17512	1	0.45127	1	0.024564	1
Del Peak 1(2q37.3)	12 (34%)	23	0.075036	1	0.16292	1	0.070279	1	0.29837	1	0.24922	1	0.50043	1	0.27138	1	0.025904	1
Del Peak 2(4q34.3)	9 (26%)	26	1	1	0.70027	1	0.64241	1	1	1	1	1	0.85454	1	1	1	0.068541	1
Del Peak 3(5p15.31)	8 (23%)	27	0.69057	1	0.70027	1	1	1	0.15	1	0.10573	1	0.11026	1	0.05288	1	0.066459	1
Del Peak 4(9p21.3)	21 (60%)	14	0.49979	1	0.51083	1	0.64241	1	0.8483	1	0.27431	1	0.18019	1	0.079987	1	0.11671	1
Del Peak 5(10q26.3)	18 (51%)	17	0.094343	1	0.092215	1	1	1	0.16855	1	0.15706	1	0.173	1	1	1	0.12492	1
Del Peak 6(11q23.3)	22 (63%)	13	0.085802	1	0.15672	1	0.36185	1	0.11812	1	0.067393	1	0.053407	1	0.15962	1	0.024988	1
Del Peak 7(15q14)	11 (31%)	24	0.027491	1	0.069323	1	0.070279	1	0.42479	1	0.054471	1	0.1248	1	0.71521	1	0.083076	1
Del Peak 8(16p13.3)	9 (26%)	26	0.44302	1	1	1	0.21842	1	0.22018	1	1	1	1	1	0.25693	1	0.46668	1