
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.84.4098/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.84.4098/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/SKCM-All_Metastatic/3157784/1.GDAC_mergedClustering.Finished/SKCM-All_Metastatic.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/SKCM-All_Metastatic/3180573/SKCM-All_Metastatic.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=180, in cluster file=260, common to both=180
[1]   8 180
[1] "CN_CNMF"
[1] 3
 1  2  3 
61 48 64 
 1  2  3 
61 48 64 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3 
50 68 62 
 1  2  3 
50 68 62 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4 
32 16 27 34 
 1  2  3  4 
32 16 27 34 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3  4  5 
20 15 35 22 17 
 1  2  3  4  5 
20 15 35 22 17 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3 
57 46 68 
 1  2  3 
57 46 68 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
46 42 83 
 1  2  3 
46 42 83 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3 
44 74 51 
 1  2  3 
44 74 51 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 21 105  43 
  1   2   3 
 21 105  43 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "DAYSTOSUBMITTEDSPECIMENDX"             
 [5] "VITALSTATUS"                           
 [6] "DCCUPLOADDATE"                         
 [7] "PRIMARYSITEOFDESEASE"                  
 [8] "GENDER"                                
 [9] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[10] "RADIATIONTHERAPY"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "DISTANT.METASTASIS"                    
[13] "LYMPH.NODE.METASTASIS"                 
[14] "TUMOR.STAGECODE"                       
[15] "NEOPLASM.DISEASESTAGE"                 
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 180 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
          NA           NA           NA         3687           NA           NA 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
          NA           NA           NA           NA         1483           NA 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
          NA         2167           NA           NA           NA          653 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 
        4511         1513           82          194          345           98 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        1487           NA         3564           NA         5926           NA 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
          NA         3265         1861           NA           NA          713 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A44Q 
          NA          870           NA         6553          477           28 
TCGA-EB-A44R TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
         309           NA           NA           NA           NA           NA 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
          NA         3335         2399           NA           NA         1455 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
          NA         1205          979           NA         1349           NA 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
        1716         1136          440         1700        10523           NA 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
          NA           NA         2401          743           NA         1787 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
        1446         1315         9567         4134         5536          686 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
        2717         1664         1673         2296         2766         3101 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
          NA          435         1691          595         2042           NA 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
        3931           NA           NA           NA           NA           NA 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
          NA           NA           NA           NA         4403         6175 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
          NA           NA         7562           NA         3150         4150 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
        1265         1620          129         3733          786          112 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
         813           NA          714           NA           NA           NA 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A19O TCGA-ER-A1A1 
          NA           NA           NA         1340           NA         2433 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FR-A3YO TCGA-FR-A44A TCGA-FS-A1YW 
        2443         1010         2448           NA         4885           NA 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
          NA           NA           NA           NA         1225           NA 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
          NA           NA           NA           NA         3080           NA 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
          NA           NA         4525         1617           NA         1505 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F4 TCGA-FS-A4F5 
          NA           NA         2366           NA           NA           NA 
TCGA-FS-A4F8 TCGA-FS-A4F9 TCGA-FS-A4FB TCGA-FS-A4FC TCGA-FS-A4FD TCGA-FW-A3I3 
          NA          378           NA         1504         2369            6 
TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-FW-A3TV TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
         699         1446           NA           NA         3664           NA 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
        2577           NA           NA           NA           NA         1204 
Variable 1:'AGE':	nDistinctValues=64,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=90,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=86,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOSUBMITTEDSPECIMENDX':	nDistinctValues=92,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 6:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=27,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DISTANT.METASTASIS':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'LYMPH.NODE.METASTASIS':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGECODE':	nDistinctValues=15,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NEOPLASM.DISEASESTAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                     "PRIMARY.SITE.OF.DISEASE"
[3] "GENDER"                  "DISTANT.METASTASIS"     
[5] "LYMPH.NODE.METASTASIS"   "TUMOR.STAGECODE"        
[7] "NEOPLASM.DISEASESTAGE"  
[1] "TUMOR.?STAGE" "6"           
[1] "stage2"
vv
 T0  T1 T1A T1B  T2 T2A T2B  T3 T3A T3B  T4 T4A T4B TIS  TX 
  6   5  14   3  20  17   7   4  22  13   5   7  27   1  14 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 180 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=64, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=4, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
DISTANT.METASTASIS, nv=5, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=10, binary=FALSE, numeric=FALSE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=13, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 30 31
  subtype2 18 29
  subtype3 35 27
subtype1 subtype2 subtype3 
      61       47       62 
subtype1 subtype2 subtype3 
      31       29       27 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D9-A1JW TCGA-D9-A1JX 
       16.57        48.76        58.03         9.30         2.70         6.38 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F3 
        3.22        48.89       194.83        65.92        68.09        10.49 
TCGA-EE-A17Z TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A29L 
        8.65         4.93       109.64       168.26        13.97         2.56 
TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A5 TCGA-EE-A2GB 
       56.42        14.47        55.89        25.87        39.25        47.54 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GN TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GU 
       22.55        89.33        90.94        14.30        55.59        67.13 
TCGA-EE-A2MD TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MN TCGA-EE-A2MS TCGA-EE-A2MT 
       47.28       204.62       144.76        47.54       136.44        41.59 
TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AG TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19N 
      122.73         3.68        23.47        12.59        26.37        44.05 
TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1ZA 
       33.21        80.48       216.92        48.59       202.62        27.68 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZT TCGA-FS-A1ZU 
       32.71        47.38        23.93        74.73        53.16        26.56 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A267 TCGA-GN-A268 
       27.06        27.02         0.20        47.54        64.41        62.76 
TCGA-GN-A26D 
       39.58 

$subtype2
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A3CC TCGA-D3-A3CE 
      112.54        71.80        31.59        43.40        71.24        60.23 
TCGA-D3-A3MV TCGA-D9-A148 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1I4 
       21.47       148.31        36.03       117.17       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-EE-A181 TCGA-EE-A29C 
      107.34        61.18        53.92       215.44        33.73        47.84 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A6 TCGA-EE-A2GM 
       39.62        32.19       345.96        17.92        58.75        75.48 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2M6 TCGA-EE-A2MH TCGA-EE-A3AE TCGA-EE-A3AF 
      101.95        13.87       129.24        16.96        26.73        13.81 
TCGA-EE-A3AH TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-FR-A44A TCGA-FS-A1YY 
      138.77         6.41       131.08        61.05       160.60       228.59 
TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZF TCGA-FS-A1ZM 
       20.91         7.76       357.37        53.52        15.45       101.26 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A4F2 TCGA-GN-A264 TCGA-GN-A26A 
      133.55        11.41        50.14       117.93        32.48 

$subtype3
TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK 
      121.22        28.08        65.49        23.77        11.87        12.10 
TCGA-D3-A3CF TCGA-D9-A149 TCGA-D9-A3Z1 TCGA-DA-A1I0 TCGA-DA-A1IB TCGA-DA-A3F2 
       24.53        49.74        11.34        20.38        23.44        28.60 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A29A 
       15.68        29.82        14.70        26.86        78.87        63.32 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
       44.35        18.58        37.35        46.82        78.94        24.43 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GK TCGA-EE-A2GL 
       43.23       314.53       135.91       182.01        54.71        55.00 
TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME 
       19.56        21.67        28.80        19.76        61.51       103.27 
TCGA-EE-A2MG TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MQ 
      103.17        96.23       203.01       167.87       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC TCGA-ER-A1A1 TCGA-ER-A3ET 
      103.56        53.26         4.24        25.84        79.99        80.32 
TCGA-FS-A1Z4 TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZS TCGA-FS-A1ZW 
       28.08        48.85        40.27         9.70       148.77        49.48 
TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 
       77.79        12.43        49.45        22.98        76.41       120.46 
TCGA-GN-A265 TCGA-GN-A266 
       84.72        10.09 

subtype1 subtype2 subtype3 
    0.20     6.41     4.24 
subtype1 subtype2 subtype3 
  216.92   357.37   314.53 
subtype1 subtype2 subtype3 
  47.280   58.750   45.585 
[1] "0.2 - 216.9 (47.3)" "6.4 - 357.4 (58.8)" "4.2 - 314.5 (45.6)"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[109] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[109] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[109] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype1"
D1V2, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                 13             0
  subtype2                  8             0
  subtype3                  4             1
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  subtype1                                                                                       11
  subtype2                                                                                       12
  subtype3                                                                                       12
          vv
clus       REGIONAL LYMPH NODE
  subtype1                  37
  subtype2                  28
  subtype3                  47
D1V3, multiclass
D1V4, binary
          cls
clus        0  1
  subtype1 24 37
  subtype2 21 27
  subtype3 22 42
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24   37
  subtype2   21   27
  subtype3   22   42
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       24       21       22
  MALE         37       27       42
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 52  1   1   0   1
  subtype2 41  1   0   1   1
  subtype3 57  0   1   1   0
D1V5, multiclass
          vv
clus       N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  subtype1 36  0   2   6  0   1   2   4  4  1
  subtype2 25  0   2   5  0   2   3   1  5  1
  subtype3 34  2   3   5  1   1   6   0  7  0
D1V6, multiclass
D1V7, continuous
          vv
clus       I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  subtype1           0       4        5        7        7         2         5
  subtype2           4       1        3        3        6         2         1
  subtype3           0      12        2        4        6         4         4
          vv
clus       STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         3         2          2          6          7        3
  subtype2         4         3          1          7          5        2
  subtype3         1         4          3          5         11        1
D1V8, multiclass

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 19 31
  subtype2 36 31
  subtype3 31 29
subtype1 subtype2 subtype3 
      50       67       60 
subtype1 subtype2 subtype3 
      31       31       29 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A2J6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3MO 
       16.57       112.54        43.40        71.24        60.23         9.30 
TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A3F3 TCGA-EB-A44R TCGA-EE-A17Z TCGA-EE-A182 
      176.55        65.92        10.49        10.16         8.65        14.70 
TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A29R TCGA-EE-A2A5 TCGA-EE-A2GN 
      109.64       168.26        13.97        14.47        39.25        90.94 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2M7 TCGA-EE-A2MI TCGA-EE-A2MS 
       13.87        14.30        55.59        28.80       204.62       136.44 
TCGA-EE-A2MT TCGA-EE-A3AC TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A3ET TCGA-ER-A3PL 
       41.59        25.84        12.59       131.08        80.32        33.21 
TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZE 
       48.59       202.62        20.91         7.76        53.52        40.27 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       47.38        23.93        74.73        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A4FB TCGA-FS-A4FD TCGA-FW-A3I3 TCGA-FW-A3TU 
       26.56        27.06        26.73        77.88         0.20        47.54 
TCGA-GN-A267 TCGA-GN-A26D 
       64.41        39.58 

$subtype2
TCGA-D3-A1Q9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3MV TCGA-D9-A148 
       31.59        48.76        12.10        58.03        21.47       148.31 
TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I7 TCGA-DA-A1I8 
        6.38        48.89       117.17       194.83        61.18        53.92 
TCGA-DA-A1IC TCGA-EB-A44Q TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A29A 
       68.09         0.92        29.82        33.73         4.93        63.32 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29X 
       32.19         2.56        56.42        37.35        55.89        17.92 
TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GJ TCGA-EE-A2GM TCGA-EE-A2GO 
       24.43        47.54        43.23        89.33        75.48       101.95 
TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       67.13       129.24       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
      248.61        43.23       122.73         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-FR-A3YN TCGA-FS-A1YW 
       23.47       138.77        26.37         6.41        80.48       216.92 
TCGA-FS-A1YY TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZM 
      228.59        27.68       357.37        15.45         9.70       101.26 
TCGA-FS-A1ZQ TCGA-FS-A1ZW TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F4 
      133.55        49.48        27.02        77.79        50.14        66.67 
TCGA-FS-A4F5 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-GN-A262 TCGA-GN-A264 
       28.73        12.43        49.45        22.98       120.46       117.93 
TCGA-GN-A268 
       62.76 

$subtype3
TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD 
       71.80       121.22        28.08        65.49        23.77        11.87 
TCGA-D3-A3CF TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW 
       24.53        49.74         2.70        11.34         3.22        36.03 
TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F5 
       20.38        35.93       107.34        23.44        28.60       215.44 
TCGA-DA-A3F8 TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29M 
       15.68        26.86        78.87        47.84        39.62        44.35 
TCGA-EE-A29N TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A6 
       18.58       345.96        25.87        46.82        78.94        58.75 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL 
      314.53       135.91       182.01        22.55        54.71        55.00 
TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
       19.56        21.67        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AA 
      103.17        16.96        96.23       103.56        53.26         4.24 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A44A TCGA-FS-A1Z4 TCGA-FS-A1ZB 
       61.05        44.05        79.99       160.60        28.08        48.85 
TCGA-FS-A1ZH TCGA-FS-A4F8 TCGA-GN-A261 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A26A 
       32.71       174.84        76.41        84.72        10.09        32.48 

subtype1 subtype2 subtype3 
    0.20     0.92     2.70 
subtype1 subtype2 subtype3 
  204.62   357.37   345.96 
subtype1 subtype2 subtype3 
   40.93    49.48    47.05 
[1] "0.2 - 204.6 (40.9)" "0.9 - 357.4 (49.5)" "2.7 - 346.0 (47.0)"
  [1] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [55] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [55] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [55] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype1"
D2V2, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                 12             0
  subtype2                 11             0
  subtype3                  4             1
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  subtype1                                                                                       12
  subtype2                                                                                       14
  subtype3                                                                                       10
          vv
clus       REGIONAL LYMPH NODE
  subtype1                  26
  subtype2                  43
  subtype3                  47
D2V3, multiclass
D2V4, binary
          cls
clus        0  1
  subtype1 19 31
  subtype2 33 35
  subtype3 18 44
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19   31
  subtype2   33   35
  subtype3   18   44
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       19       33       18
  MALE         31       35       44
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 43  1   1   0   0
  subtype2 60  1   0   1   0
  subtype3 54  0   1   1   2
D2V5, multiclass
          vv
clus       N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  subtype1 29  0   4   7  0   0   3   1  2  0
  subtype2 37  0   3   1  1   3   4   3  9  1
  subtype3 32  2   1   8  0   1   5   1  7  1
D2V6, multiclass
D2V7, continuous
          vv
clus       I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  subtype1           1       3        1        4        8         2         4
  subtype2           3       4        6        5        5         4         5
  subtype3           0      11        3        6        6         3         1
          vv
clus       STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         4         4          2          4          7        2
  subtype2         4         2          3          8          9        1
  subtype3         0         4          1          7          9        3
D2V8, multiclass

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1  9 23
  subtype2 13  3
  subtype3 12 14
  subtype4 16 18
subtype1 subtype2 subtype3 subtype4 
      32       16       26       34 
subtype1 subtype2 subtype3 subtype4 
      23        3       14       18 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A3CE 
       16.57       112.54        71.80        28.08        65.49        60.23 
TCGA-DA-A1HY TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-EE-A182 TCGA-EE-A20F 
      117.17        35.93       107.34        53.92        14.70        78.87 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29R TCGA-EE-A2A0 TCGA-EE-A2GP TCGA-EE-A2M5 
       47.84        39.62        14.47        46.82        13.87        21.67 
TCGA-EE-A2MC TCGA-EE-A2MI TCGA-EE-A2ML TCGA-EE-A2MU TCGA-ER-A19D TCGA-FS-A1ZA 
       61.51       204.62       203.01        53.26        12.59        27.68 
TCGA-FS-A1ZD TCGA-FS-A1ZH TCGA-FS-A1ZZ TCGA-GN-A261 TCGA-GN-A265 TCGA-GN-A266 
       53.52        32.71        27.02        76.41        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A26A 
       64.41        32.48 

$subtype2
TCGA-D3-A1Q7 TCGA-DA-A1HV TCGA-DA-A1IB TCGA-EE-A181 TCGA-EE-A29M TCGA-EE-A29N 
      121.22        48.89        23.44        33.73        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29T TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GK TCGA-EE-A2GT 
       56.42       345.96        58.75        43.23        54.71        19.56 
TCGA-EE-A2GU TCGA-EE-A2M8 TCGA-EE-A2MR TCGA-EE-A3AA 
       67.13        19.76       103.56         4.24 

$subtype3
TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW 
       31.59        43.40        11.87       148.31        49.74         2.70 
TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-EE-A185 
        6.38        36.03       176.55        65.92        68.09         4.93 
TCGA-EE-A29H TCGA-EE-A29V TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GR TCGA-EE-A2MP 
       32.19        25.87       182.01        22.55        14.30       248.61 
TCGA-EE-A3AD TCGA-ER-A1A1 TCGA-FS-A1Z3 TCGA-FS-A1ZG TCGA-FS-A1ZK TCGA-FS-A1ZM 
        3.68        79.99        20.91         9.70        23.93       101.26 
TCGA-FS-A1ZQ TCGA-GN-A268 
      133.55        62.76 

$subtype4
TCGA-EE-A17X TCGA-EE-A29L TCGA-EE-A29S TCGA-EE-A2A2 TCGA-EE-A2GL TCGA-EE-A2GS 
       29.82         2.56        55.89        24.43        55.00        55.59 
TCGA-EE-A2M6 TCGA-EE-A2MD TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN 
      129.24        47.28        96.23       144.76       167.87        47.54 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AF 
      136.44        41.59       122.73        25.84        26.73        13.81 
TCGA-EE-A3AG TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-FS-A1YW 
       23.47        26.37         6.41       131.08        44.05       216.92 
TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZC TCGA-FS-A1ZJ TCGA-FS-A1ZP TCGA-FS-A1ZT 
      202.62        28.08       357.37        47.38        74.73        53.16 
TCGA-FS-A1ZU TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A26D 
       26.56       120.46       117.93        39.58 

subtype1 subtype2 subtype3 subtype4 
   10.09     4.24     2.70     2.56 
subtype1 subtype2 subtype3 subtype4 
  204.62   345.96   248.61   357.37 
subtype1 subtype2 subtype3 subtype4 
   50.55    46.62    34.11    50.35 
[1] "10.1 - 204.6 (50.5)" "4.2 - 346.0 (46.6)"  "2.7 - 248.6 (34.1)" 
[4] "2.6 - 357.4 (50.3)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype4" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype4"
 [43] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
 [49] "subtype1" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
 [55] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype4"
 [61] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype2"
 [67] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype4"
 [73] "subtype3" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
 [85] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [91] "subtype1" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
 [97] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
[103] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype4" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype4"
 [43] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
 [49] "subtype1" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
 [55] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype4"
 [61] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype2"
 [67] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype4"
 [73] "subtype3" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
 [85] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [91] "subtype1" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
 [97] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
[103] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype4" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype4"
 [43] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
 [49] "subtype1" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
 [55] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype4"
 [61] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype2"
 [67] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype4"
 [73] "subtype3" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
 [85] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [91] "subtype1" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
 [97] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
[103] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
D3V2, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  4             0
  subtype2                  0             1
  subtype3                  5             0
  subtype4                  4             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  subtype1                                                                                        9
  subtype2                                                                                        0
  subtype3                                                                                        4
  subtype4                                                                                        2
          vv
clus       REGIONAL LYMPH NODE
  subtype1                  19
  subtype2                  15
  subtype3                  18
  subtype4                  28
D3V3, multiclass
D3V4, binary
          cls
clus        0  1
  subtype1 13 19
  subtype2 10  6
  subtype3 10 17
  subtype4 11 23
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   19
  subtype2   10    6
  subtype3   10   17
  subtype4   11   23
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       13       10       10       11
  MALE         19        6       17       23
          vv
clus       M0 M1 M1B M1C
  subtype1 27  0   1   2
  subtype2 15  0   0   0
  subtype3 24  0   1   0
  subtype4 24  1   0   0
D3V5, multiclass
          vv
clus       N0 N1 N1A N1B N2A N2B N2C N3 NX
  subtype1 14  1   3   5   0   1   2  4  0
  subtype2 11  1   0   0   0   2   0  0  1
  subtype3  9  0   0   6   2   2   2  3  1
  subtype4 22  0   0   2   0   0   0  2  0
D3V6, multiclass
D3V7, continuous
          vv
clus       I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  subtype1           1       2        1        3        2         2         2
  subtype2           0       2        2        2        1         1         1
  subtype3           1       2        2        0        2         0         2
  subtype4           1       5        3        3        5         2         0
          vv
clus       STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         0         3          2          4          5        3
  subtype2         1         1          0          1          1        0
  subtype3         0         1          0          5          6        0
  subtype4         2         1          0          1          1        1
D3V8, multiclass

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1  6 14
  subtype2 12  3
  subtype3 16 19
  subtype4  7 14
  subtype5  9  8
subtype1 subtype2 subtype3 subtype4 subtype5 
      20       15       35       21       17 
subtype1 subtype2 subtype3 subtype4 subtype5 
      14        3       19       14        8 
$subtype1
TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-DA-A1I8 TCGA-EE-A29S TCGA-EE-A2GL TCGA-EE-A2MI 
      112.54        28.08        53.92        55.89        55.00       204.62 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AG TCGA-ER-A19D 
      167.87        47.54       122.73        25.84        23.47        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZP TCGA-FS-A1ZU 
       26.37         6.41       357.37        53.52        74.73        26.56 
TCGA-GN-A266 TCGA-GN-A26D 
       10.09        39.58 

$subtype2
TCGA-D3-A1Q7 TCGA-DA-A1HV TCGA-EE-A29P TCGA-EE-A29T TCGA-EE-A2A2 TCGA-EE-A2GK 
      121.22        48.89        56.42       345.96        24.43        54.71 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2MR TCGA-EE-A3AA TCGA-EE-A3AF 
       19.56        67.13       129.24       103.56         4.24        13.81 
TCGA-ER-A19N TCGA-FS-A1Z0 TCGA-FS-A1Z4 
       44.05       202.62        28.08 

$subtype3
TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3CE TCGA-D9-A148 TCGA-D9-A149 TCGA-DA-A1IA 
       43.40        11.87        60.23       148.31        49.74        65.92 
TCGA-DA-A1IC TCGA-EE-A17X TCGA-EE-A185 TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A2GI 
       68.09        29.82         4.93        32.19         2.56        22.55 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2MD TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MS 
       14.30        55.59        47.28       144.76       203.01       136.44 
TCGA-EE-A2MT TCGA-EE-A3AD TCGA-EE-A3AE TCGA-ER-A19L TCGA-ER-A1A1 TCGA-FS-A1YW 
       41.59         3.68        26.73       131.08        79.99       216.92 
TCGA-FS-A1Z3 TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZQ 
       20.91         9.70        47.38        23.93       101.26       133.55 
TCGA-FS-A1ZT TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A268 
       53.16        76.41       120.46       117.93        62.76 

$subtype4
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A2J8 TCGA-DA-A1HY TCGA-DA-A1I4 TCGA-DA-A1I5 
       16.57        71.80        65.49       117.17        35.93       107.34 
TCGA-EE-A182 TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29R TCGA-EE-A29V TCGA-EE-A2A0 
       14.70        47.84        39.62        14.47        25.87        46.82 
TCGA-EE-A2GP TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2MU TCGA-FS-A1ZA TCGA-FS-A1ZZ 
       13.87        21.67        61.51        53.26        27.68        27.02 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26A 
       84.72        64.41        32.48 

$subtype5
TCGA-D3-A1Q9 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A1IB 
       31.59         2.70         6.38        36.03       176.55        23.44 
TCGA-EE-A181 TCGA-EE-A20F TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A2A6 TCGA-EE-A2GC 
       33.73        78.87        44.35        18.58        58.75        43.23 
TCGA-EE-A2GH TCGA-EE-A2M8 TCGA-EE-A2MJ TCGA-EE-A2MP TCGA-FS-A1ZH 
      182.01        19.76        96.23       248.61        32.71 

subtype1 subtype2 subtype3 subtype4 subtype5 
    6.41     4.24     2.56    13.87     2.70 
subtype1 subtype2 subtype3 subtype4 subtype5 
  357.37   345.96   216.92   117.17   248.61 
subtype1 subtype2 subtype3 subtype4 subtype5 
   50.53    54.71    53.16    39.62    36.03 
[1] "6.4 - 357.4 (50.5)"  "4.2 - 346.0 (54.7)"  "2.6 - 216.9 (53.2)" 
[4] "13.9 - 117.2 (39.6)" "2.7 - 248.6 (36.0)" 
  [1] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype5"
  [7] "subtype3" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype5" "subtype5" "subtype2" "subtype5" "subtype4" "subtype5"
 [19] "subtype4" "subtype4" "subtype1" "subtype3" "subtype5" "subtype3"
 [25] "subtype3" "subtype5" "subtype4" "subtype3" "subtype5" "subtype4"
 [31] "subtype4" "subtype3" "subtype3" "subtype5" "subtype5" "subtype2"
 [37] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype2"
 [43] "subtype5" "subtype5" "subtype5" "subtype3" "subtype2" "subtype1"
 [49] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype4"
 [55] "subtype2" "subtype5" "subtype4" "subtype3" "subtype1" "subtype5"
 [61] "subtype3" "subtype3" "subtype1" "subtype1" "subtype5" "subtype2"
 [67] "subtype3" "subtype3" "subtype4" "subtype2" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [79] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [85] "subtype3" "subtype2" "subtype4" "subtype1" "subtype1" "subtype3"
 [91] "subtype5" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [97] "subtype3" "subtype1" "subtype4" "subtype3" "subtype3" "subtype3"
[103] "subtype4" "subtype1" "subtype4" "subtype3" "subtype4" "subtype1"
  [1] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype5"
  [7] "subtype3" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype5" "subtype5" "subtype2" "subtype5" "subtype4" "subtype5"
 [19] "subtype4" "subtype4" "subtype1" "subtype3" "subtype5" "subtype3"
 [25] "subtype3" "subtype5" "subtype4" "subtype3" "subtype5" "subtype4"
 [31] "subtype4" "subtype3" "subtype3" "subtype5" "subtype5" "subtype2"
 [37] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype2"
 [43] "subtype5" "subtype5" "subtype5" "subtype3" "subtype2" "subtype1"
 [49] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype4"
 [55] "subtype2" "subtype5" "subtype4" "subtype3" "subtype1" "subtype5"
 [61] "subtype3" "subtype3" "subtype1" "subtype1" "subtype5" "subtype2"
 [67] "subtype3" "subtype3" "subtype4" "subtype2" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [79] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [85] "subtype3" "subtype2" "subtype4" "subtype1" "subtype1" "subtype3"
 [91] "subtype5" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [97] "subtype3" "subtype1" "subtype4" "subtype3" "subtype3" "subtype3"
[103] "subtype4" "subtype1" "subtype4" "subtype3" "subtype4" "subtype1"
  [1] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype5"
  [7] "subtype3" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype5" "subtype5" "subtype2" "subtype5" "subtype4" "subtype5"
 [19] "subtype4" "subtype4" "subtype1" "subtype3" "subtype5" "subtype3"
 [25] "subtype3" "subtype5" "subtype4" "subtype3" "subtype5" "subtype4"
 [31] "subtype4" "subtype3" "subtype3" "subtype5" "subtype5" "subtype2"
 [37] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype2"
 [43] "subtype5" "subtype5" "subtype5" "subtype3" "subtype2" "subtype1"
 [49] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype4"
 [55] "subtype2" "subtype5" "subtype4" "subtype3" "subtype1" "subtype5"
 [61] "subtype3" "subtype3" "subtype1" "subtype1" "subtype5" "subtype2"
 [67] "subtype3" "subtype3" "subtype4" "subtype2" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [79] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [85] "subtype3" "subtype2" "subtype4" "subtype1" "subtype1" "subtype3"
 [91] "subtype5" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [97] "subtype3" "subtype1" "subtype4" "subtype3" "subtype3" "subtype3"
[103] "subtype4" "subtype1" "subtype4" "subtype3" "subtype4" "subtype1"
D4V2, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  2             0
  subtype2                  1             0
  subtype3                  5             0
  subtype4                  5             0
  subtype5                  0             1
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  subtype1                                                                                        4
  subtype2                                                                                        0
  subtype3                                                                                        6
  subtype4                                                                                        5
  subtype5                                                                                        0
          vv
clus       REGIONAL LYMPH NODE
  subtype1                  14
  subtype2                  14
  subtype3                  24
  subtype4                  12
  subtype5                  16
D4V3, multiclass
D4V4, binary
          cls
clus        0  1
  subtype1  6 14
  subtype2  8  7
  subtype3 14 21
  subtype4  8 14
  subtype5  8  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6   14
  subtype2    8    7
  subtype3   14   21
  subtype4    8   14
  subtype5    8    9
          vv
clus       M0 M1 M1B M1C
  subtype1 13  1   1   0
  subtype2 12  0   0   0
  subtype3 29  0   1   0
  subtype4 20  0   0   1
  subtype5 16  0   0   1
D4V5, multiclass
          vv
clus       N0 N1 N1A N1B N2A N2B N2C N3 NX
  subtype1 13  0   0   0   0   0   0  3  0
  subtype2  9  0   0   1   0   1   0  0  1
  subtype3 17  1   0   5   0   1   2  4  0
  subtype4  8  0   3   6   0   1   1  2  0
  subtype5  9  1   0   1   2   2   1  0  1
D4V6, multiclass
D4V7, continuous
          vv
clus       I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  subtype1           2       2        0        1        1         3         1
  subtype2           0       4        2        1        0         1         0
  subtype3           1       1        4        3        6         0         2
  subtype4           0       2        1        2        0         1         1
  subtype5           0       2        1        1        3         0         1
          vv
clus       STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         2         0          0          0          1        2
  subtype2         1         0          0          2          0        0
  subtype3         0         4          0          2          5        0
  subtype4         0         1          2          5          5        1
  subtype5         0         1          0          2          2        1
D4V8, multiclass

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 22 35
  subtype2 32 14
  subtype3 27 38
subtype1 subtype2 subtype3 
      57       46       65 
subtype1 subtype2 subtype3 
      35       14       38 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A3C6 TCGA-D3-A3CE 
       16.57       112.54        71.80        28.08        58.03        60.23 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-DA-A1I8 
        9.30        21.47       117.17       176.55        61.18        53.92 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29Q 
       10.49       215.44       109.64       168.26        63.32        37.35 
TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GN 
       14.47       345.96        39.25       314.53       135.91        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
      101.95        13.87        55.59        21.67       129.24        28.80 
TCGA-EE-A2MC TCGA-EE-A2MI TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A3AB 
       61.51       204.62       167.87       248.61       136.44       122.73 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A3PL TCGA-FS-A1YX 
       23.47       138.77        12.59       131.08        33.21        48.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZD 
      202.62        20.91         7.76        27.68       357.37        53.52 
TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-GN-A261 
       15.45        32.71       101.26        11.41       148.77        76.41 
TCGA-GN-A262 TCGA-GN-A266 TCGA-GN-A26A 
      120.46        10.09        32.48 

$subtype2
TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A3CF TCGA-D9-A1JX 
      121.22        65.49        23.77        48.76        24.53         6.38 
TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F8 TCGA-EE-A181 
       48.89       194.83       107.34        23.44        15.68        33.73 
TCGA-EE-A20F TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2A1 
       78.87        18.58        56.42        55.89        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       24.43        58.75        43.23       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2ME TCGA-EE-A2MG 
       54.71        55.00        19.56        19.76       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MR TCGA-EE-A3AA 
       16.96        96.23       144.76       203.01       103.56         4.24 
TCGA-EE-A3AE TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A44A TCGA-FS-A1Z4 
       26.73        61.05        44.05        79.99       160.60        28.08 
TCGA-FS-A1ZP TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-GN-A265 
       74.73        53.16        49.48        84.72 

$subtype3
TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3CC TCGA-D9-A148 
       31.59        43.40        11.87        12.10        71.24       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I0 
       49.74         2.70        11.34         3.22        36.03        20.38 
TCGA-DA-A1I4 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 
       35.93        65.92        68.09        29.82         8.65        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
       26.86         4.93        47.84        13.97        39.62        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2GB TCGA-EE-A2GM 
        2.56        44.35        25.87        17.92        47.54        75.48 
TCGA-EE-A2GR TCGA-EE-A2GU TCGA-EE-A2MD TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MT 
       14.30        67.13        47.28        47.54        43.23        41.59 
TCGA-EE-A2MU TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-ER-A19F TCGA-ER-A19J 
       53.26        25.84         3.68        13.81        26.37         6.41 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZG 
       80.48       216.92       228.59        48.85        40.27         9.70 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZQ TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       47.38        23.93       133.55        26.56        27.06        27.02 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       77.79        50.14        12.43        49.45         0.20        22.98 
TCGA-FW-A3TU TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       47.54       117.93        64.41        62.76        39.58 

subtype1 subtype2 subtype3 
    7.76     4.24     0.20 
subtype1 subtype2 subtype3 
  357.37   203.01   228.59 
subtype1 subtype2 subtype3 
  61.180   54.855   36.030 
[1] "7.8 - 357.4 (61.2)" "4.2 - 203.0 (54.9)" "0.2 - 228.6 (36.0)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[121] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[163] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[121] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[163] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[121] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[163] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
D5V2, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  7             0
  subtype2                  3             0
  subtype3                 15             1
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  subtype1                                                                                       22
  subtype2                                                                                        1
  subtype3                                                                                       10
          vv
clus       REGIONAL LYMPH NODE
  subtype1                  28
  subtype2                  42
  subtype3                  42
D5V3, multiclass
D5V4, binary
          cls
clus        0  1
  subtype1 24 33
  subtype2 15 31
  subtype3 27 41
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24   33
  subtype2   15   31
  subtype3   27   41
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       24       15       27
  MALE         33       31       41
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 48  0   1   1   1
  subtype2 42  0   0   0   1
  subtype3 58  2   1   1   0
D5V5, multiclass
          vv
clus       N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  subtype1 29  1   3   4  0   1   3   4  5  1
  subtype2 31  1   1   2  0   0   3   0  4  1
  subtype3 35  0   2  10  1   3   4   1  7  0
D5V6, multiclass
D5V7, continuous
          vv
clus       I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  subtype1           2       8        1        4        7         2         3
  subtype2           0       6        5        4        8         4         1
  subtype3           2       3        4        6        4         2         6
          vv
clus       STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         1         5          2          5          7        3
  subtype2         1         2          0          4          5        1
  subtype3         6         2          3          8         11        2
D5V8, multiclass

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 15 30
  subtype2 14 28
  subtype3 52 29
subtype1 subtype2 subtype3 
      45       42       81 
subtype1 subtype2 subtype3 
      30       28       29 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A2J6 TCGA-D3-A2JK TCGA-D3-A3CC TCGA-DA-A1I4 TCGA-DA-A1IA 
       16.57        43.40        12.10        71.24        35.93        65.92 
TCGA-DA-A1IC TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A29D 
       68.09        29.82         8.65        14.70         4.93        13.97 
TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29V TCGA-EE-A2GM TCGA-EE-A2GR TCGA-EE-A2MN 
       39.62         2.56        25.87        75.48        14.30        47.54 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AD TCGA-EE-A3AF TCGA-ER-A19J TCGA-ER-A3PL 
      136.44        41.59         3.68        13.81         6.41        33.21 
TCGA-FS-A1YY TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK 
      228.59        48.85        40.27         9.70        47.38        23.93 
TCGA-FS-A1ZR TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
       11.41        26.56        27.06        27.02        77.79        50.14 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A264 
       12.43        49.45         0.20        47.54        76.41       117.93 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       64.41        62.76        39.58 

$subtype2
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A3C6 TCGA-D3-A3MO 
      112.54        71.80        28.08        65.49        58.03         9.30 
TCGA-D3-A3MV TCGA-DA-A1HY TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-EE-A20B 
       21.47       117.17        61.18        53.92       215.44       109.64 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A2A5 TCGA-EE-A2GN 
      168.26        63.32        37.35        14.47        39.25        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2MC 
      101.95        13.87        55.59        21.67        28.80        61.51 
TCGA-EE-A2MI TCGA-EE-A2MM TCGA-EE-A3AB TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
      204.62       167.87       122.73        23.47       138.77        12.59 
TCGA-ER-A19L TCGA-FS-A1YX TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZC TCGA-FS-A1ZD 
      131.08        48.59        20.91         7.76       357.37        53.52 
TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZS TCGA-GN-A262 TCGA-GN-A266 TCGA-GN-A26A 
       15.45        32.71       148.77       120.46        10.09        32.48 

$subtype3
TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3CE 
      121.22        31.59        23.77        11.87        48.76        60.23 
TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 
       24.53       148.31        49.74         2.70         6.38        11.34 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        3.22        48.89        36.03        20.38       194.83       176.55 
TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A183 
      107.34        23.44        10.49        15.68        33.73        26.86 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       78.87        47.84        32.19        44.35        18.58        56.42 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
       55.89       345.96        17.92        46.82        78.94        24.43 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2GU 
       22.55        89.33        54.71        55.00        19.56        67.13 
TCGA-EE-A2M6 TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
      129.24        19.76        47.28       103.27       103.17        16.96 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
       96.23       144.76       203.01       248.61        43.23       103.56 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AE TCGA-ER-A19F TCGA-ER-A19M 
       53.26         4.24        25.84        26.73        26.37        61.05 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z0 
       44.05        79.99        80.48       160.60       216.92       202.62 
TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZT 
       28.08        27.68       101.26        74.73       133.55        53.16 
TCGA-FS-A1ZW TCGA-FW-A3R5 TCGA-GN-A265 
       49.48        22.98        84.72 

subtype1 subtype2 subtype3 
    0.20     7.76     2.70 
subtype1 subtype2 subtype3 
  228.59   357.37   345.96 
subtype1 subtype2 subtype3 
   35.93    56.81    49.48 
[1] "0.2 - 228.6 (35.9)" "7.8 - 357.4 (56.8)" "2.7 - 346.0 (49.5)"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
  [7] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [13] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [55] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[151] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[163] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
  [7] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [13] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [55] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[151] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[163] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
  [7] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [13] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [55] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[151] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[163] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
D6V2, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                 14             0
  subtype2                  5             0
  subtype3                  6             1
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  subtype1                                                                                       10
  subtype2                                                                                       17
  subtype3                                                                                        6
          vv
clus       REGIONAL LYMPH NODE
  subtype1                  22
  subtype2                  20
  subtype3                  70
D6V3, multiclass
D6V4, binary
          cls
clus        0  1
  subtype1 21 25
  subtype2 16 26
  subtype3 29 54
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   21   25
  subtype2   16   26
  subtype3   29   54
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       21       16       29
  MALE         25       26       54
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 38  2   1   0   0
  subtype2 34  0   0   1   1
  subtype3 76  0   1   1   1
D6V5, multiclass
          vv
clus       N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  subtype1 26  1   1   5  0   0   3   1  5  0
  subtype2 22  0   3   3  0   1   1   2  4  0
  subtype3 47  1   2   8  1   3   6   2  7  2
D6V6, multiclass
D6V7, continuous
          vv
clus       I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  subtype1           1       2        1        1        5         2         6
  subtype2           2       5        0        5        5         2         2
  subtype3           1      10        9        8        9         4         2
          vv
clus       STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         6         1          1          4          9        3
  subtype2         1         2          2          3          5        2
  subtype3         1         6          2         10          9        1
D6V8, multiclass

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 27 16
  subtype2 32 42
  subtype3 21 28
subtype1 subtype2 subtype3 
      43       74       49 
subtype1 subtype2 subtype3 
      16       42       28 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A3CE TCGA-D3-A3MV 
       16.57       112.54        28.08        31.59        60.23        21.47 
TCGA-D9-A1JX TCGA-DA-A1I0 TCGA-DA-A1I8 TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 
        6.38        20.38        53.92        28.60       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A29P TCGA-EE-A29T TCGA-EE-A29X 
       29.82        14.70       109.64        56.42       345.96        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GU 
       46.82        24.43        47.54        22.55        54.71        67.13 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MD TCGA-EE-A2ML TCGA-EE-A2MP TCGA-EE-A2MR 
      129.24        28.80        47.28       203.01       248.61       103.56 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AG TCGA-ER-A19F TCGA-ER-A19N TCGA-ER-A1A1 
      122.73        25.84        23.47        26.37        44.05        79.99 
TCGA-FS-A1ZC TCGA-FS-A1ZH TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A265 
      357.37        32.71         0.20        47.54       120.46        84.72 
TCGA-GN-A26D 
       39.58 

$subtype2
TCGA-D3-A2J6 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D9-A148 
       43.40        48.76        12.10        58.03        24.53       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
       49.74         2.70        11.34         3.22        48.89        36.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F3 
      194.83       176.55        65.92        23.44        68.09        10.49 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29D 
        8.65        33.73        26.86         4.93        78.87        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29R 
       39.62        32.19         2.56        44.35        18.58        14.47 
TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GR 
       58.75        43.23        89.33        55.00        90.94        14.30 
TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2ME TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK 
       19.56        19.76       103.27        16.96        96.23       144.76 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA 
      167.87        47.54        43.23       136.44        41.59         4.24 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19J TCGA-ER-A3PL 
        3.68        26.73        13.81       138.77         6.41        33.21 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1ZF TCGA-FS-A1ZG 
       80.48       216.92       202.62        20.91        15.45         9.70 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZT 
       47.38        23.93        74.73       133.55        11.41        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-GN-A264 
       26.56        49.48        27.06        27.02        77.79       117.93 
TCGA-GN-A267 TCGA-GN-A268 
       64.41        62.76 

$subtype3
TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A3CC 
       71.80       121.22        65.49        23.77        11.87        71.24 
TCGA-D3-A3MO TCGA-DA-A1HY TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-EE-A20H 
        9.30       117.17        35.93       107.34        61.18       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A1 
       63.32        47.84        37.35        55.89        25.87        78.94 
TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GM TCGA-EE-A2GO 
       39.25       314.53       135.91       182.01        75.48       101.95 
TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2MG TCGA-EE-A2MI 
       13.87        55.59        21.67        61.51       103.17       204.62 
TCGA-EE-A2MU TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A3ET TCGA-FS-A1YX 
       53.26        12.59       131.08        61.05        80.32        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD 
      228.59        28.08         7.76        27.68        48.85        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A266 
       40.27       101.26       148.77        22.98        76.41        10.09 
TCGA-GN-A26A 
       32.48 

subtype1 subtype2 subtype3 
    0.20     2.56     7.76 
subtype1 subtype2 subtype3 
  357.37   216.92   314.53 
subtype1 subtype2 subtype3 
   46.82    42.41    61.05 
[1] "0.2 - 357.4 (46.8)" "2.6 - 216.9 (42.4)" "7.8 - 314.5 (61.0)"
  [1] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [67] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [85] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [67] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [85] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [67] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [85] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype1"
D7V2, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  4             0
  subtype2                 11             1
  subtype3                  9             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  subtype1                                                                                        7
  subtype2                                                                                        8
  subtype3                                                                                       19
          vv
clus       REGIONAL LYMPH NODE
  subtype1                  33
  subtype2                  54
  subtype3                  23
D7V3, multiclass
D7V4, binary
          cls
clus        0  1
  subtype1 19 25
  subtype2 28 46
  subtype3 17 34
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19   25
  subtype2   28   46
  subtype3   17   34
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       19       28       17
  MALE         25       46       34
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 32  1   1   1   1
  subtype2 66  1   1   1   0
  subtype3 48  0   0   0   1
D7V5, multiclass
          vv
clus       N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  subtype1 19  0   1   4  0   2   2   1  6  2
  subtype2 42  1   2   8  0   2   6   1  7  0
  subtype3 31  1   4   4  1   0   3   3  2  0
D7V6, multiclass
D7V7, continuous
          vv
clus       I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  subtype1           2       4        3        1        4         1         0
  subtype2           1       5        6        5       11         3         7
  subtype3           1       8        1        8        3         3         3
          vv
clus       STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         2         1          1          6          6        3
  subtype2         2         2          2          8         11        2
  subtype3         3         6          3          4          5        1
D7V8, multiclass

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 13  7
  subtype2 49 54
  subtype3 18 25
subtype1 subtype2 subtype3 
      20      103       43 
subtype1 subtype2 subtype3 
       7       54       25 
$subtype1
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A3MV TCGA-D9-A1JX TCGA-DA-A1I0 TCGA-DA-A3F2 
       28.08        31.59        21.47         6.38        20.38        28.60 
TCGA-DA-A3F8 TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A29P TCGA-EE-A2A0 TCGA-EE-A2A2 
       15.68        14.70       109.64        56.42        46.82        24.43 
TCGA-EE-A2GB TCGA-EE-A2GU TCGA-EE-A2M7 TCGA-EE-A2ML TCGA-EE-A3AG TCGA-FS-A1ZC 
       47.54        67.13        28.80       203.01        23.47       357.37 
TCGA-FW-A3I3 TCGA-GN-A265 
        0.20        84.72 

$subtype2
TCGA-D3-A1Q1 TCGA-D3-A1Q7 TCGA-D3-A2J6 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       16.57       121.22        43.40        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A3Z1 
       71.24        24.53       148.31        49.74         2.70        11.34 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
        3.22        48.89        36.03       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-EE-A17Z 
      107.34        65.92        23.44        68.09        10.49         8.65 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29E 
       33.73        26.86         4.93        78.87        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29S 
       32.19         2.56        44.35        18.58        14.47        55.89 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD 
       25.87        17.92        39.25        58.75        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GN 
      135.91       182.01        22.55        89.33        55.00        90.94 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2MD 
       13.87        14.30        55.59        19.56        19.76        47.28 
TCGA-EE-A2ME TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN 
      103.27        16.96        96.23       144.76       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61        43.23       136.44        41.59        53.26         4.24 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19F 
       25.84         3.68        26.73        13.81       138.77        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN 
        6.41       131.08        61.05        80.32        33.21        80.48 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1ZF 
      216.92        48.59       228.59       202.62        20.91        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
        9.70        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       11.41        53.16        26.56        49.48        27.06        27.02 
TCGA-FS-A4F0 TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
       77.79        47.54       120.46       117.93        64.41        62.76 
TCGA-GN-A26D 
       39.58 

$subtype3
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A3CE 
      112.54        71.80        65.49        23.77        11.87        60.23 
TCGA-D3-A3MO TCGA-DA-A1HY TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-EE-A17X 
        9.30       117.17        61.18        53.92       215.44        29.82 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A2A1 
      168.26        63.32        47.84        37.35       345.96        78.94 
TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2MC 
       54.71        75.48       101.95        21.67       129.24        61.51 
TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MR TCGA-EE-A3AB TCGA-ER-A19D TCGA-ER-A19N 
      103.17       204.62       103.56       122.73        12.59        44.05 
TCGA-ER-A1A1 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD 
       79.99        28.08         7.76        27.68        48.85        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZS TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A266 
       40.27        32.71       148.77        22.98        76.41        10.09 
TCGA-GN-A26A 
       32.48 

subtype1 subtype2 subtype3 
    0.20     2.56     7.76 
subtype1 subtype2 subtype3 
  357.37   314.53   345.96 
subtype1 subtype2 subtype3 
   28.70    47.28    60.23 
[1] "0.2 - 357.4 (28.7)" "2.6 - 314.5 (47.3)" "7.8 - 346.0 (60.2)"
  [1] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype2"
D8V2, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  3             0
  subtype2                 16             1
  subtype3                  5             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  subtype1                                                                                        5
  subtype2                                                                                       18
  subtype3                                                                                       11
          vv
clus       REGIONAL LYMPH NODE
  subtype1                  13
  subtype2                  70
  subtype3                  27
D8V3, multiclass
D8V4, binary
          cls
clus        0  1
  subtype1  8 13
  subtype2 44 61
  subtype3 12 31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8   13
  subtype2   44   61
  subtype3   12   31
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        8       44       12
  MALE         13       61       31
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 16  1   1   1   0
  subtype2 91  1   1   1   1
  subtype3 39  0   0   0   1
D8V5, multiclass
          vv
clus       N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  subtype1  8  0   1   3  0   2   2   0  2  1
  subtype2 62  1   4   9  0   2   8   2  8  0
  subtype3 22  1   2   4  1   0   1   3  5  1
D8V6, multiclass
D8V7, continuous
          vv
clus       I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  subtype1           1       0        1        0        3         1         0
  subtype2           2       9        8       10       12         5         8
  subtype3           1       8        1        4        3         1         2
          vv
clus       STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         1         0          1          6          2        2
  subtype2         4         4          3         10         13        3
  subtype3         2         5          2          2          7        1
D8V8, multiclass
                     V1.D                        V2                        V3 
          "Time to Death"                     "AGE" "PRIMARY.SITE.OF.DISEASE" 
                       V4                        V5                        V6 
                 "GENDER"      "DISTANT.METASTASIS"   "LYMPH.NODE.METASTASIS" 
                       V7                        V8 
        "TUMOR.STAGECODE"   "NEOPLASM.DISEASESTAGE" 
> q(save="no")
