
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/400647/SKCM-All_Metastatic.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/SKCM-All_Metastatic/3180574/SKCM-All_Metastatic.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=180, in cluster file=228, common to both=161
[1] "Reduce the number of clustering variables from 114 to 111."
[1] 111 161
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            26            135 
  TP53 MUTATED TP53 WILD-TYPE 
            26            135 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            82             79 
  BRAF MUTATED BRAF WILD-TYPE 
            82             79 
[1] "C15ORF23 MUTATION ANALYSIS"
[1] 3
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                11                150 
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                11                150 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              27              134 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              27              134 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
            49            112 
  NRAS MUTATED NRAS WILD-TYPE 
            49            112 
[1] "OXA1L MUTATION ANALYSIS"
[1] 3
  OXA1L MUTATED OXA1L WILD-TYPE 
              5             156 
  OXA1L MUTATED OXA1L WILD-TYPE 
              5             156 
[1] "STK19 MUTATION ANALYSIS"
[1] 3
  STK19 MUTATED STK19 WILD-TYPE 
             10             151 
  STK19 MUTATED STK19 WILD-TYPE 
             10             151 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            13            148 
  PTEN MUTATED PTEN WILD-TYPE 
            13            148 
[1] "RAC1 MUTATION ANALYSIS"
[1] 3
  RAC1 MUTATED RAC1 WILD-TYPE 
            12            149 
  RAC1 MUTATED RAC1 WILD-TYPE 
            12            149 
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
             8            153 
  IDH1 MUTATED IDH1 WILD-TYPE 
             8            153 
[1] "ACSM2B MUTATION ANALYSIS"
[1] 3
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              31              130 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              31              130 
[1] "PPP6C MUTATION ANALYSIS"
[1] 3
  PPP6C MUTATED PPP6C WILD-TYPE 
             15             146 
  PPP6C MUTATED PPP6C WILD-TYPE 
             15             146 
[1] "LCE1B MUTATION ANALYSIS"
[1] 3
  LCE1B MUTATED LCE1B WILD-TYPE 
              9             152 
  LCE1B MUTATED LCE1B WILD-TYPE 
              9             152 
[1] "MUC7 MUTATION ANALYSIS"
[1] 3
  MUC7 MUTATED MUC7 WILD-TYPE 
            11            150 
  MUC7 MUTATED MUC7 WILD-TYPE 
            11            150 
[1] "OR51S1 MUTATION ANALYSIS"
[1] 3
  OR51S1 MUTATED OR51S1 WILD-TYPE 
              17              144 
  OR51S1 MUTATED OR51S1 WILD-TYPE 
              17              144 
[1] "NAP1L2 MUTATION ANALYSIS"
[1] 3
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
              17              144 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
              17              144 
[1] "PRB2 MUTATION ANALYSIS"
[1] 3
  PRB2 MUTATED PRB2 WILD-TYPE 
            24            137 
  PRB2 MUTATED PRB2 WILD-TYPE 
            24            137 
[1] "TAF1A MUTATION ANALYSIS"
[1] 3
  TAF1A MUTATED TAF1A WILD-TYPE 
             10             151 
  TAF1A MUTATED TAF1A WILD-TYPE 
             10             151 
[1] "HIST1H2AA MUTATION ANALYSIS"
[1] 3
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  7                 154 
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  7                 154 
[1] "FRG2B MUTATION ANALYSIS"
[1] 3
  FRG2B MUTATED FRG2B WILD-TYPE 
             10             151 
  FRG2B MUTATED FRG2B WILD-TYPE 
             10             151 
[1] "CDH9 MUTATION ANALYSIS"
[1] 3
  CDH9 MUTATED CDH9 WILD-TYPE 
            27            134 
  CDH9 MUTATED CDH9 WILD-TYPE 
            27            134 
[1] "PRAMEF11 MUTATION ANALYSIS"
[1] 3
  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
                15                146 
  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
                15                146 
[1] "HBG2 MUTATION ANALYSIS"
[1] 3
  HBG2 MUTATED HBG2 WILD-TYPE 
             7            154 
  HBG2 MUTATED HBG2 WILD-TYPE 
             7            154 
[1] "DDX3X MUTATION ANALYSIS"
[1] 3
  DDX3X MUTATED DDX3X WILD-TYPE 
             16             145 
  DDX3X MUTATED DDX3X WILD-TYPE 
             16             145 
[1] "PRB4 MUTATION ANALYSIS"
[1] 3
  PRB4 MUTATED PRB4 WILD-TYPE 
            18            143 
  PRB4 MUTATED PRB4 WILD-TYPE 
            18            143 
[1] "GRXCR1 MUTATION ANALYSIS"
[1] 3
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
              15              146 
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
              15              146 
[1] "HHLA2 MUTATION ANALYSIS"
[1] 3
  HHLA2 MUTATED HHLA2 WILD-TYPE 
             12             149 
  HHLA2 MUTATED HHLA2 WILD-TYPE 
             12             149 
[1] "RBM11 MUTATION ANALYSIS"
[1] 3
  RBM11 MUTATED RBM11 WILD-TYPE 
             11             150 
  RBM11 MUTATED RBM11 WILD-TYPE 
             11             150 
[1] "FUT9 MUTATION ANALYSIS"
[1] 3
  FUT9 MUTATED FUT9 WILD-TYPE 
            17            144 
  FUT9 MUTATED FUT9 WILD-TYPE 
            17            144 
[1] "TTN MUTATION ANALYSIS"
[1] 3
  TTN MUTATED TTN WILD-TYPE 
          127            34 
  TTN MUTATED TTN WILD-TYPE 
          127            34 
[1] "HBD MUTATION ANALYSIS"
[1] 3
  HBD MUTATED HBD WILD-TYPE 
            9           152 
  HBD MUTATED HBD WILD-TYPE 
            9           152 
[1] "KIAA1257 MUTATION ANALYSIS"
[1] 3
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
                 7                154 
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
                 7                154 
[1] "USP17L2 MUTATION ANALYSIS"
[1] 3
  USP17L2 MUTATED USP17L2 WILD-TYPE 
               16               145 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
               16               145 
[1] "CADM2 MUTATION ANALYSIS"
[1] 3
  CADM2 MUTATED CADM2 WILD-TYPE 
             18             143 
  CADM2 MUTATED CADM2 WILD-TYPE 
             18             143 
[1] "GFRAL MUTATION ANALYSIS"
[1] 3
  GFRAL MUTATED GFRAL WILD-TYPE 
             24             137 
  GFRAL MUTATED GFRAL WILD-TYPE 
             24             137 
[1] "OR4N2 MUTATION ANALYSIS"
[1] 3
  OR4N2 MUTATED OR4N2 WILD-TYPE 
             19             142 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
             19             142 
[1] "UGT2B15 MUTATION ANALYSIS"
[1] 3
  UGT2B15 MUTATED UGT2B15 WILD-TYPE 
               17               144 
  UGT2B15 MUTATED UGT2B15 WILD-TYPE 
               17               144 
[1] "UNC119B MUTATION ANALYSIS"
[1] 3
  UNC119B MUTATED UNC119B WILD-TYPE 
                3               158 
  UNC119B MUTATED UNC119B WILD-TYPE 
                3               158 
[1] "RAPGEF5 MUTATION ANALYSIS"
[1] 3
  RAPGEF5 MUTATED RAPGEF5 WILD-TYPE 
                8               153 
  RAPGEF5 MUTATED RAPGEF5 WILD-TYPE 
                8               153 
[1] "C8A MUTATION ANALYSIS"
[1] 3
  C8A MUTATED C8A WILD-TYPE 
           21           140 
  C8A MUTATED C8A WILD-TYPE 
           21           140 
[1] "ANKRD20A4 MUTATION ANALYSIS"
[1] 3
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  4                 157 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  4                 157 
[1] "ELF5 MUTATION ANALYSIS"
[1] 3
  ELF5 MUTATED ELF5 WILD-TYPE 
             4            157 
  ELF5 MUTATED ELF5 WILD-TYPE 
             4            157 
[1] "SPAG16 MUTATION ANALYSIS"
[1] 3
  SPAG16 MUTATED SPAG16 WILD-TYPE 
              13              148 
  SPAG16 MUTATED SPAG16 WILD-TYPE 
              13              148 
[1] "PHGDH MUTATION ANALYSIS"
[1] 3
  PHGDH MUTATED PHGDH WILD-TYPE 
              8             153 
  PHGDH MUTATED PHGDH WILD-TYPE 
              8             153 
[1] "COPG2 MUTATION ANALYSIS"
[1] 3
  COPG2 MUTATED COPG2 WILD-TYPE 
              3             158 
  COPG2 MUTATED COPG2 WILD-TYPE 
              3             158 
[1] "GML MUTATION ANALYSIS"
[1] 3
  GML MUTATED GML WILD-TYPE 
            8           153 
  GML MUTATED GML WILD-TYPE 
            8           153 
[1] "TBC1D3B MUTATION ANALYSIS"
[1] 3
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                3               158 
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                3               158 
[1] "TFEC MUTATION ANALYSIS"
[1] 3
  TFEC MUTATED TFEC WILD-TYPE 
            15            146 
  TFEC MUTATED TFEC WILD-TYPE 
            15            146 
[1] "TRAT1 MUTATION ANALYSIS"
[1] 3
  TRAT1 MUTATED TRAT1 WILD-TYPE 
             11             150 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
             11             150 
[1] "PRR23B MUTATION ANALYSIS"
[1] 3
  PRR23B MUTATED PRR23B WILD-TYPE 
              11              150 
  PRR23B MUTATED PRR23B WILD-TYPE 
              11              150 
[1] "C9ORF119 MUTATION ANALYSIS"
[1] 3
  C9ORF119 MUTATED C9ORF119 WILD-TYPE 
                 5                156 
  C9ORF119 MUTATED C9ORF119 WILD-TYPE 
                 5                156 
[1] "LIN7A MUTATION ANALYSIS"
[1] 3
  LIN7A MUTATED LIN7A WILD-TYPE 
              9             152 
  LIN7A MUTATED LIN7A WILD-TYPE 
              9             152 
[1] "PARM1 MUTATION ANALYSIS"
[1] 3
  PARM1 MUTATED PARM1 WILD-TYPE 
             14             147 
  PARM1 MUTATED PARM1 WILD-TYPE 
             14             147 
[1] "CCK MUTATION ANALYSIS"
[1] 3
  CCK MUTATED CCK WILD-TYPE 
            5           156 
  CCK MUTATED CCK WILD-TYPE 
            5           156 
[1] "TCEB3C MUTATION ANALYSIS"
[1] 3
  TCEB3C MUTATED TCEB3C WILD-TYPE 
              23              138 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
              23              138 
[1] "DEFB118 MUTATION ANALYSIS"
[1] 3
  DEFB118 MUTATED DEFB118 WILD-TYPE 
                7               154 
  DEFB118 MUTATED DEFB118 WILD-TYPE 
                7               154 
[1] "VEGFC MUTATION ANALYSIS"
[1] 3
  VEGFC MUTATED VEGFC WILD-TYPE 
             16             145 
  VEGFC MUTATED VEGFC WILD-TYPE 
             16             145 
[1] "MARCH11 MUTATION ANALYSIS"
[1] 3
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                8               153 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                8               153 
[1] "ZFP106 MUTATION ANALYSIS"
[1] 3
  ZFP106 MUTATED ZFP106 WILD-TYPE 
               6              155 
  ZFP106 MUTATED ZFP106 WILD-TYPE 
               6              155 
[1] "PDE1A MUTATION ANALYSIS"
[1] 3
  PDE1A MUTATED PDE1A WILD-TYPE 
             26             135 
  PDE1A MUTATED PDE1A WILD-TYPE 
             26             135 
[1] "OR4F6 MUTATION ANALYSIS"
[1] 3
  OR4F6 MUTATED OR4F6 WILD-TYPE 
             12             149 
  OR4F6 MUTATED OR4F6 WILD-TYPE 
             12             149 
[1] "CD2 MUTATION ANALYSIS"
[1] 3
  CD2 MUTATED CD2 WILD-TYPE 
           15           146 
  CD2 MUTATED CD2 WILD-TYPE 
           15           146 
[1] "EIF3D MUTATION ANALYSIS"
[1] 3
  EIF3D MUTATED EIF3D WILD-TYPE 
              3             158 
  EIF3D MUTATED EIF3D WILD-TYPE 
              3             158 
[1] "MKX MUTATION ANALYSIS"
[1] 3
  MKX MUTATED MKX WILD-TYPE 
           11           150 
  MKX MUTATED MKX WILD-TYPE 
           11           150 
[1] "ARL16 MUTATION ANALYSIS"
[1] 3
  ARL16 MUTATED ARL16 WILD-TYPE 
              5             156 
  ARL16 MUTATED ARL16 WILD-TYPE 
              5             156 
[1] "OR2L3 MUTATION ANALYSIS"
[1] 3
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             13             148 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             13             148 
[1] "DEFB119 MUTATION ANALYSIS"
[1] 3
  DEFB119 MUTATED DEFB119 WILD-TYPE 
                6               155 
  DEFB119 MUTATED DEFB119 WILD-TYPE 
                6               155 
[1] "KLHL4 MUTATION ANALYSIS"
[1] 3
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             16             145 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             16             145 
[1] "NR1H4 MUTATION ANALYSIS"
[1] 3
  NR1H4 MUTATED NR1H4 WILD-TYPE 
             10             151 
  NR1H4 MUTATED NR1H4 WILD-TYPE 
             10             151 
[1] "IL32 MUTATION ANALYSIS"
[1] 3
  IL32 MUTATED IL32 WILD-TYPE 
             7            154 
  IL32 MUTATED IL32 WILD-TYPE 
             7            154 
[1] "DGAT2L6 MUTATION ANALYSIS"
[1] 3
  DGAT2L6 MUTATED DGAT2L6 WILD-TYPE 
                9               152 
  DGAT2L6 MUTATED DGAT2L6 WILD-TYPE 
                9               152 
[1] "OR8D4 MUTATION ANALYSIS"
[1] 3
  OR8D4 MUTATED OR8D4 WILD-TYPE 
              9             152 
  OR8D4 MUTATED OR8D4 WILD-TYPE 
              9             152 
[1] "GRXCR2 MUTATION ANALYSIS"
[1] 3
  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
              12              149 
  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
              12              149 
[1] "OR5H2 MUTATION ANALYSIS"
[1] 3
  OR5H2 MUTATED OR5H2 WILD-TYPE 
             12             149 
  OR5H2 MUTATED OR5H2 WILD-TYPE 
             12             149 
[1] "SIGLEC14 MUTATION ANALYSIS"
[1] 3
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 8                153 
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 8                153 
[1] "ZNF479 MUTATION ANALYSIS"
[1] 3
  ZNF479 MUTATED ZNF479 WILD-TYPE 
              15              146 
  ZNF479 MUTATED ZNF479 WILD-TYPE 
              15              146 
[1] "C2 MUTATION ANALYSIS"
[1] 3
  C2 MUTATED C2 WILD-TYPE 
           7          154 
  C2 MUTATED C2 WILD-TYPE 
           7          154 
[1] "GH2 MUTATION ANALYSIS"
[1] 3
  GH2 MUTATED GH2 WILD-TYPE 
           10           151 
  GH2 MUTATED GH2 WILD-TYPE 
           10           151 
[1] "GK2 MUTATION ANALYSIS"
[1] 3
  GK2 MUTATED GK2 WILD-TYPE 
           21           140 
  GK2 MUTATED GK2 WILD-TYPE 
           21           140 
[1] "C2ORF40 MUTATION ANALYSIS"
[1] 3
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
                4               157 
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
                4               157 
[1] "CXCR2 MUTATION ANALYSIS"
[1] 3
  CXCR2 MUTATED CXCR2 WILD-TYPE 
             11             150 
  CXCR2 MUTATED CXCR2 WILD-TYPE 
             11             150 
[1] "RPTN MUTATION ANALYSIS"
[1] 3
  RPTN MUTATED RPTN WILD-TYPE 
            27            134 
  RPTN MUTATED RPTN WILD-TYPE 
            27            134 
[1] "PRIM2 MUTATION ANALYSIS"
[1] 3
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              9             152 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              9             152 
[1] "MUM1L1 MUTATION ANALYSIS"
[1] 3
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
              17              144 
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
              17              144 
[1] "TLL1 MUTATION ANALYSIS"
[1] 3
  TLL1 MUTATED TLL1 WILD-TYPE 
            33            128 
  TLL1 MUTATED TLL1 WILD-TYPE 
            33            128 
[1] "PRC1 MUTATION ANALYSIS"
[1] 3
  PRC1 MUTATED PRC1 WILD-TYPE 
             9            152 
  PRC1 MUTATED PRC1 WILD-TYPE 
             9            152 
[1] "GLRB MUTATION ANALYSIS"
[1] 3
  GLRB MUTATED GLRB WILD-TYPE 
            19            142 
  GLRB MUTATED GLRB WILD-TYPE 
            19            142 
[1] "AREG MUTATION ANALYSIS"
[1] 3
  AREG MUTATED AREG WILD-TYPE 
             6            155 
  AREG MUTATED AREG WILD-TYPE 
             6            155 
[1] "SPINK13 MUTATION ANALYSIS"
[1] 3
  SPINK13 MUTATED SPINK13 WILD-TYPE 
                6               155 
  SPINK13 MUTATED SPINK13 WILD-TYPE 
                6               155 
[1] "ACD MUTATION ANALYSIS"
[1] 3
  ACD MUTATED ACD WILD-TYPE 
            7           154 
  ACD MUTATED ACD WILD-TYPE 
            7           154 
[1] "C2ORF39 MUTATION ANALYSIS"
[1] 3
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                8               153 
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                8               153 
[1] "RERG MUTATION ANALYSIS"
[1] 3
  RERG MUTATED RERG WILD-TYPE 
             9            152 
  RERG MUTATED RERG WILD-TYPE 
             9            152 
[1] "TUBB8 MUTATION ANALYSIS"
[1] 3
  TUBB8 MUTATED TUBB8 WILD-TYPE 
              8             153 
  TUBB8 MUTATED TUBB8 WILD-TYPE 
              8             153 
[1] "AGXT2 MUTATION ANALYSIS"
[1] 3
  AGXT2 MUTATED AGXT2 WILD-TYPE 
             16             145 
  AGXT2 MUTATED AGXT2 WILD-TYPE 
             16             145 
[1] "C9 MUTATION ANALYSIS"
[1] 3
  C9 MUTATED C9 WILD-TYPE 
          12          149 
  C9 MUTATED C9 WILD-TYPE 
          12          149 
[1] "CX3CL1 MUTATION ANALYSIS"
[1] 3
  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
               3              158 
  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
               3              158 
[1] "DEFB112 MUTATION ANALYSIS"
[1] 3
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                6               155 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                6               155 
[1] "FAM19A1 MUTATION ANALYSIS"
[1] 3
  FAM19A1 MUTATED FAM19A1 WILD-TYPE 
                7               154 
  FAM19A1 MUTATED FAM19A1 WILD-TYPE 
                7               154 
[1] "LONRF2 MUTATION ANALYSIS"
[1] 3
  LONRF2 MUTATED LONRF2 WILD-TYPE 
              13              148 
  LONRF2 MUTATED LONRF2 WILD-TYPE 
              13              148 
[1] "NAP1L4 MUTATION ANALYSIS"
[1] 3
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
               6              155 
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
               6              155 
[1] "OR5J2 MUTATION ANALYSIS"
[1] 3
  OR5J2 MUTATED OR5J2 WILD-TYPE 
             11             150 
  OR5J2 MUTATED OR5J2 WILD-TYPE 
             11             150 
[1] "POM121 MUTATION ANALYSIS"
[1] 3
  POM121 MUTATED POM121 WILD-TYPE 
              11              150 
  POM121 MUTATED POM121 WILD-TYPE 
              11              150 
[1] "RBM22 MUTATION ANALYSIS"
[1] 3
  RBM22 MUTATED RBM22 WILD-TYPE 
              4             157 
  RBM22 MUTATED RBM22 WILD-TYPE 
              4             157 
[1] "SLC10A2 MUTATION ANALYSIS"
[1] 3
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
               15               146 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
               15               146 
[1] "C4ORF22 MUTATION ANALYSIS"
[1] 3
  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
                8               153 
  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
                8               153 
[1] "CLEC14A MUTATION ANALYSIS"
[1] 3
  CLEC14A MUTATED CLEC14A WILD-TYPE 
               15               146 
  CLEC14A MUTATED CLEC14A WILD-TYPE 
               15               146 
[1] "GNAI2 MUTATION ANALYSIS"
[1] 3
  GNAI2 MUTATED GNAI2 WILD-TYPE 
              4             157 
  GNAI2 MUTATED GNAI2 WILD-TYPE 
              4             157 
[1] "IGF2BP3 MUTATION ANALYSIS"
[1] 3
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                3               158 
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                3               158 
[1] "RBM46 MUTATION ANALYSIS"
[1] 3
  RBM46 MUTATED RBM46 WILD-TYPE 
             11             150 
  RBM46 MUTATED RBM46 WILD-TYPE 
             11             150 
[1] "SERPINB4 MUTATION ANALYSIS"
[1] 3
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                21                140 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                21                140 
[1] "SORT1 MUTATION ANALYSIS"
[1] 3
  SORT1 MUTATED SORT1 WILD-TYPE 
              5             156 
  SORT1 MUTATED SORT1 WILD-TYPE 
              5             156 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "DAYSTOSUBMITTEDSPECIMENDX"             
 [5] "VITALSTATUS"                           
 [6] "DCCUPLOADDATE"                         
 [7] "PRIMARYSITEOFDESEASE"                  
 [8] "GENDER"                                
 [9] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[10] "RADIATIONTHERAPY"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "DISTANT.METASTASIS"                    
[13] "LYMPH.NODE.METASTASIS"                 
[14] "TUMOR.STAGECODE"                       
[15] "NEOPLASM.DISEASESTAGE"                 
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 161 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
          NA           NA           NA         3004           NA           NA 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
          NA           NA           NA           NA          939           NA 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
          NA         1390           NA           NA           NA          164 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 
          NA           NA           NA           NA          122           87 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        1484           NA         1555           NA         1192           NA 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
          NA         1354         1116           NA           NA          680 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
          NA          589           NA          534          451           NA 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
          NA           NA           NA           NA           NA         1097 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
         156           NA           NA         1155           NA         1175 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
         134           NA          825           NA          366          247 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
         269          304           NA           NA           NA          769 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
         727           NA          272           NA           NA           NA 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
          NA           NA           NA           NA           NA           NA 
TCGA-ER-A19N TCGA-ER-A19O TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A3YO TCGA-FS-A1YW 
        1303           NA         2386          200           NA           NA 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1ZA 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1ZH TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
          NA           NA           NA           NA           NA           NA 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
           6           31           NA          756           NA         2577 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
          NA           NA           NA           NA          447 
Variable 1:'AGE':	nDistinctValues=62,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=48,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=36,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOSUBMITTEDSPECIMENDX':	nDistinctValues=79,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 6:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=26,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DISTANT.METASTASIS':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'LYMPH.NODE.METASTASIS':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGECODE':	nDistinctValues=15,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NEOPLASM.DISEASESTAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                     "PRIMARY.SITE.OF.DISEASE"
[3] "GENDER"                  "DISTANT.METASTASIS"     
[5] "LYMPH.NODE.METASTASIS"   "TUMOR.STAGECODE"        
[7] "NEOPLASM.DISEASESTAGE"  
[1] "TUMOR.?STAGE" "6"           
[1] "stage2"
vv
 T0  T1 T1A T1B  T2 T2A T2B  T3 T3A T3B  T4 T4A T4B TIS  TX 
  6   3  14   3  17  15   6   4  20  12   5   6  24   1  11 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 161 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=62, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=4, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
DISTANT.METASTASIS, nv=5, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=10, binary=FALSE, numeric=FALSE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=13, binary=FALSE, numeric=FALSE

Clustering(1) Variable = TP53 MUTATION ANALYSIS
D1V1, survival
                sevent
clus2             0  1
  TP53 MUTATED    7  6
  TP53 WILD-TYPE 29 43
  TP53 MUTATED TP53 WILD-TYPE 
            13             72 
  TP53 MUTATED TP53 WILD-TYPE 
             6             43 
$`TP53 MUTATED`
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I5 TCGA-EE-A181 TCGA-EE-A29E TCGA-EE-A29L 
       48.79        35.80        44.52         1.12        38.63         1.08 
TCGA-EE-A29M TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A2 TCGA-ER-A3ET TCGA-FW-A3R5 
       27.12         2.43         8.09        23.90         6.58         1.02 
TCGA-GN-A266 
       10.09 

$`TP53 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        4.01         2.86        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
        9.99        36.69        25.15         4.93        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        1.35        12.20         4.27        36.07         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29P 
        7.96        37.97        11.15         4.41         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 
        8.12         8.84         9.99        11.31        25.28         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       42.84        78.44         8.81         0.20        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        16.21        15.39        12.16        14.70 

  TP53 MUTATED TP53 WILD-TYPE 
          1.02           0.20 
  TP53 MUTATED TP53 WILD-TYPE 
         48.79          98.76 
  TP53 MUTATED TP53 WILD-TYPE 
         10.09          12.18 
[1] "1.0 - 48.8 (10.1)" "0.2 - 98.8 (12.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-GN-A26D 
"TP53 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-GN-A26D 
"TP53 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-GN-A26D 
"TP53 WILD-TYPE" 
[1] "hr=" "1.3"
D1V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  TP53 MUTATED                    2             1
  TP53 WILD-TYPE                 21             0
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TP53 MUTATED                                                                                          5
  TP53 WILD-TYPE                                                                                       27
                vv
clus             REGIONAL LYMPH NODE
  TP53 MUTATED                    18
  TP53 WILD-TYPE                  87
D1V3, multiclass
                                                                                          clus
vv                                                                                         TP53 MUTATED
  DISTANT METASTASIS                                                                                  2
  PRIMARY TUMOR                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            5
  REGIONAL LYMPH NODE                                                                                18
                                                                                          clus
vv                                                                                         TP53 WILD-TYPE
  DISTANT METASTASIS                                                                                   21
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             27
  REGIONAL LYMPH NODE                                                                                  87
D1V4, binary
                cls
clus              0  1
  TP53 MUTATED   10 16
  TP53 WILD-TYPE 49 86
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     10   16
  TP53 WILD-TYPE   49   86
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           10             49
  MALE             16             86
                vv
clus              M0  M1 M1A M1B M1C
  TP53 MUTATED    21   0   0   0   1
  TP53 WILD-TYPE 119   2   1   2   1
D1V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TP53 MUTATED   11  0   3   4  1   1   1   0  1  0
  TP53 WILD-TYPE 77  2   4  11  0   3   9   5 14  1
D1V6, multiclass
D1V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TP53 MUTATED             0       2        3        2        1         1
  TP53 WILD-TYPE           4      14        7       11       17         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  TP53 MUTATED           1         0         1          2          6          2
  TP53 WILD-TYPE         8         7         7          4         12         19
                vv
clus             STAGE IV
  TP53 MUTATED          1
  TP53 WILD-TYPE        4
D1V8, multiclass

Clustering(2) Variable = BRAF MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  BRAF MUTATED   19 24
  BRAF WILD-TYPE 17 25
  BRAF MUTATED BRAF WILD-TYPE 
            43             42 
  BRAF MUTATED BRAF WILD-TYPE 
            24             25 
$`BRAF MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J9 TCGA-D3-A2JD 
       32.55        70.16        98.76        22.55        21.14        11.41 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D9-A3Z3 TCGA-DA-A1HW 
        6.35        15.25        13.32         9.30         2.86        35.80 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       51.12        10.03        13.68         9.99        44.52        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A183 
       25.15        22.36        17.56        14.83         1.12        12.20 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E 
       36.07         5.13         8.81         7.96        37.97        38.63 
TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A2A0 TCGA-EE-A2A6 
        4.41        27.12         9.47        12.03        11.31         8.94 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19M TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A262 
       11.11         4.18        28.64         8.81         1.02        24.85 
TCGA-GN-A265 
       84.72 

$`BRAF WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2JF TCGA-D3-A3CC 
       16.47        28.08        10.26         8.38        30.87        45.70 
TCGA-D3-A3CF TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A1IA 
       24.00         5.39         4.01        48.79        39.19         4.93 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 
        6.64        19.36         7.00        11.57         6.31         1.35 
TCGA-EE-A185 TCGA-EE-A29D TCGA-EE-A29L TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        4.27        11.15         1.08         8.12         8.84         9.99 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-ER-A19D 
        2.43         8.09        25.28        23.90         9.67         3.52 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FW-A3I3 TCGA-GN-A261 
       12.99        42.84        78.44         6.58         0.20        15.35 
TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        10.09        16.21        15.39        12.16        14.70 

  BRAF MUTATED BRAF WILD-TYPE 
          1.02           0.20 
  BRAF MUTATED BRAF WILD-TYPE 
         98.76          78.44 
  BRAF MUTATED BRAF WILD-TYPE 
        13.680         10.705 
[1] "1.0 - 98.8 (13.7)" "0.2 - 78.4 (10.7)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-GN-A26D 
"BRAF WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-GN-A26D 
"BRAF WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-GN-A26D 
"BRAF WILD-TYPE" 
[1] "hr=" "1.4"
D2V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  BRAF MUTATED                    8             1
  BRAF WILD-TYPE                 15             0
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  BRAF MUTATED                                                                                         14
  BRAF WILD-TYPE                                                                                       18
                vv
clus             REGIONAL LYMPH NODE
  BRAF MUTATED                    59
  BRAF WILD-TYPE                  46
D2V3, multiclass
                                                                                          clus
vv                                                                                         BRAF MUTATED
  DISTANT METASTASIS                                                                                  8
  PRIMARY TUMOR                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           14
  REGIONAL LYMPH NODE                                                                                59
                                                                                          clus
vv                                                                                         BRAF WILD-TYPE
  DISTANT METASTASIS                                                                                   15
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             18
  REGIONAL LYMPH NODE                                                                                  46
D2V4, binary
                cls
clus              0  1
  BRAF MUTATED   29 53
  BRAF WILD-TYPE 30 49
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     29   53
  BRAF WILD-TYPE   30   49
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE           29             30
  MALE             53             49
                vv
clus             M0 M1 M1A M1B M1C
  BRAF MUTATED   70  1   1   1   2
  BRAF WILD-TYPE 70  1   0   1   0
D2V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  BRAF MUTATED   44  1   2   7  1   3   6   3  7  1
  BRAF WILD-TYPE 44  1   5   8  0   1   4   2  8  0
D2V6, multiclass
D2V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  BRAF MUTATED             3      10        3        6       10         4
  BRAF WILD-TYPE           1       6        7        7        8         3
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  BRAF MUTATED           2         3         6          3          8          9
  BRAF WILD-TYPE         7         4         2          3         10         12
                vv
clus             STAGE IV
  BRAF MUTATED          3
  BRAF WILD-TYPE        2
D2V8, multiclass

Clustering(3) Variable = C15ORF23 MUTATION ANALYSIS
D3V1, survival
                    sevent
clus2                 0  1
  C15ORF23 MUTATED    1  4
  C15ORF23 WILD-TYPE 35 45
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                 5                 80 
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                 4                 45 
$`C15ORF23 MUTATED`
TCGA-D3-A2JD TCGA-DA-A1IC TCGA-EE-A181 TCGA-EE-A2A2 TCGA-GN-A266 
       11.41         6.64         1.12        23.90        10.09 

$`C15ORF23 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
       22.36        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        6.31         1.35        12.20         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        8.81         7.96        37.97        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        1.08        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 
        9.99         2.43         8.09        11.31        25.28         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 
       42.84        78.44         6.58         8.81         0.20         1.02 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       15.35        24.85        31.33        84.72        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
              1.12               0.20 
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
             23.90              98.76 
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
            10.090             12.595 
[1] "1.1 - 23.9 (10.1)" "0.2 - 98.8 (12.6)"
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A26D 
"C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A26D 
"C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A26D 
"C15ORF23 WILD-TYPE" 
[1] "hr=" "2.4"
D3V2, continuous
                    vv
clus                 DISTANT METASTASIS PRIMARY TUMOR
  C15ORF23 MUTATED                    1             0
  C15ORF23 WILD-TYPE                 22             1
                    vv
clus                 REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  C15ORF23 MUTATED                                                                                          3
  C15ORF23 WILD-TYPE                                                                                       29
                    vv
clus                 REGIONAL LYMPH NODE
  C15ORF23 MUTATED                     7
  C15ORF23 WILD-TYPE                  98
D3V3, multiclass
                                                                                          clus
vv                                                                                         C15ORF23 MUTATED
  DISTANT METASTASIS                                                                                      1
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                3
  REGIONAL LYMPH NODE                                                                                     7
                                                                                          clus
vv                                                                                         C15ORF23 WILD-TYPE
  DISTANT METASTASIS                                                                                       22
  PRIMARY TUMOR                                                                                             1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 29
  REGIONAL LYMPH NODE                                                                                      98
D3V4, binary
                    cls
clus                  0  1
  C15ORF23 MUTATED    3  8
  C15ORF23 WILD-TYPE 56 94
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C15ORF23 MUTATED      3    8
  C15ORF23 WILD-TYPE   56   94
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  FEMALE                3                 56
  MALE                  8                 94
                    vv
clus                  M0  M1 M1A M1B M1C
  C15ORF23 MUTATED    10   0   0   0   0
  C15ORF23 WILD-TYPE 130   2   1   2   2
D3V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  C15ORF23 MUTATED    6  0   0   3  0   0   0   1  0  0
  C15ORF23 WILD-TYPE 82  2   7  12  1   4  10   4 15  1
D3V6, multiclass
D3V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  C15ORF23 MUTATED             0       2        0        0        2         0
  C15ORF23 WILD-TYPE           4      14       10       13       16         7
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  C15ORF23 MUTATED           2         0         1          0          2
  C15ORF23 WILD-TYPE         7         7         7          6         16
                    vv
clus                 STAGE IIIC STAGE IV
  C15ORF23 MUTATED            1        0
  C15ORF23 WILD-TYPE         20        5
D3V8, multiclass

Clustering(4) Variable = CDKN2A MUTATION ANALYSIS
D4V1, survival
                  sevent
clus2               0  1
  CDKN2A MUTATED    8  8
  CDKN2A WILD-TYPE 28 41
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              16               69 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8               41 
$`CDKN2A MUTATED`
TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-DA-A1HV 
       11.41        30.87         6.35         5.39         4.01        48.79 
TCGA-DA-A1HY TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A29E TCGA-EE-A29V 
       51.12         1.12         4.27        36.07        38.63         2.43 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19L TCGA-GN-A26A 
        8.94         3.52        12.99        12.16 

$`CDKN2A WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
       10.26         8.38        21.14        15.25        45.70        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 
       24.00         9.30         2.86        35.80        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A20H 
       11.57         6.31         1.35        12.20         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
        7.96        37.97        11.15         4.41         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X 
        9.47        12.03         8.12         8.84         9.99         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-ER-A19F TCGA-ER-A19J 
       11.31        25.28        23.90         9.67        11.11         4.18 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        1.02        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       16.21        15.39        14.70 

  CDKN2A MUTATED CDKN2A WILD-TYPE 
            1.12             0.20 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           51.12            98.76 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
          10.175           13.320 
[1] "1.1 - 51.1 (10.2)" "0.2 - 98.8 (13.3)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-GN-A26D 
"CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-GN-A26D 
"CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-GN-A26D 
"CDKN2A WILD-TYPE" 
[1] "hr=" "1"  
D4V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  CDKN2A MUTATED                    4             0
  CDKN2A WILD-TYPE                 19             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CDKN2A MUTATED                                                                                          7
  CDKN2A WILD-TYPE                                                                                       25
                  vv
clus               REGIONAL LYMPH NODE
  CDKN2A MUTATED                    16
  CDKN2A WILD-TYPE                  89
D4V3, multiclass
                                                                                          clus
vv                                                                                         CDKN2A MUTATED
  DISTANT METASTASIS                                                                                    4
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              7
  REGIONAL LYMPH NODE                                                                                  16
                                                                                          clus
vv                                                                                         CDKN2A WILD-TYPE
  DISTANT METASTASIS                                                                                     19
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               25
  REGIONAL LYMPH NODE                                                                                    89
D4V4, binary
                  cls
clus                0  1
  CDKN2A MUTATED   10 17
  CDKN2A WILD-TYPE 49 85
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED     10   17
  CDKN2A WILD-TYPE   49   85
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  FEMALE             10               49
  MALE               17               85
                  vv
clus                M0  M1 M1A M1B M1C
  CDKN2A MUTATED    25   0   0   0   0
  CDKN2A WILD-TYPE 115   2   1   2   2
D4V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CDKN2A MUTATED   13  0   3   3  0   1   2   0  3  0
  CDKN2A WILD-TYPE 75  2   4  12  1   3   8   5 12  1
D4V6, multiclass
D4V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CDKN2A MUTATED             2       1        3        2        3         0
  CDKN2A WILD-TYPE           2      15        7       11       15         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CDKN2A MUTATED           1         1         0          1          5
  CDKN2A WILD-TYPE         8         6         8          5         13
                  vv
clus               STAGE IIIC STAGE IV
  CDKN2A MUTATED            6        0
  CDKN2A WILD-TYPE         15        5
D4V8, multiclass

Clustering(5) Variable = NRAS MUTATION ANALYSIS
D5V1, survival
                sevent
clus2             0  1
  NRAS MUTATED   10 13
  NRAS WILD-TYPE 26 36
  NRAS MUTATED NRAS WILD-TYPE 
            23             62 
  NRAS MUTATED NRAS WILD-TYPE 
            13             36 
$`NRAS MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-DA-A1HV 
       16.47        28.08         8.38         5.39         4.01        48.79 
TCGA-DA-A1I1 TCGA-DA-A3F3 TCGA-EE-A17X TCGA-EE-A185 TCGA-EE-A29L TCGA-EE-A29Q 
       39.19         7.00        11.57         4.27         1.08         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         2.43         8.09        25.28        23.90 
TCGA-EE-A2A5 TCGA-ER-A19D TCGA-ER-A19N TCGA-GN-A267 TCGA-GN-A268 
        9.67         3.52        42.84        16.21        15.39 

$`NRAS WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J9 
       32.55        70.16        98.76        22.55        10.26        21.14 
TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
       11.41        30.87         6.35        15.25        45.70        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
       24.00         9.30         2.86        35.80        51.12        10.03 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17Z 
       22.36         6.64        19.36        17.56        14.83         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        1.12         1.35        12.20        36.07         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M 
        7.96        37.97        11.15        38.63         4.41        27.12 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A2A0 TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J 
        9.47        12.03        11.31         8.94        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       12.99        28.64        78.44         6.58         8.81         0.20 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        1.02        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  NRAS MUTATED NRAS WILD-TYPE 
          1.08           0.20 
  NRAS MUTATED NRAS WILD-TYPE 
         48.79          98.76 
  NRAS MUTATED NRAS WILD-TYPE 
         9.670         13.155 
[1] "1.1 - 48.8 (9.7)"  "0.2 - 98.8 (13.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
  "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-GN-A26D 
"NRAS WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
  "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-GN-A26D 
"NRAS WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
  "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-GN-A26D 
"NRAS WILD-TYPE" 
[1] "hr=" "1.3"
D5V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  NRAS MUTATED                   10             0
  NRAS WILD-TYPE                 13             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  NRAS MUTATED                                                                                         10
  NRAS WILD-TYPE                                                                                       22
                vv
clus             REGIONAL LYMPH NODE
  NRAS MUTATED                    29
  NRAS WILD-TYPE                  76
D5V3, multiclass
                                                                                          clus
vv                                                                                         NRAS MUTATED
  DISTANT METASTASIS                                                                                 10
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           10
  REGIONAL LYMPH NODE                                                                                29
                                                                                          clus
vv                                                                                         NRAS WILD-TYPE
  DISTANT METASTASIS                                                                                   13
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             22
  REGIONAL LYMPH NODE                                                                                  76
D5V4, binary
                cls
clus              0  1
  NRAS MUTATED   18 31
  NRAS WILD-TYPE 41 71
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED     18   31
  NRAS WILD-TYPE   41   71
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  FEMALE           18             41
  MALE             31             71
                vv
clus             M0 M1 M1A M1B M1C
  NRAS MUTATED   45  0   0   1   0
  NRAS WILD-TYPE 95  2   1   1   2
D5V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  NRAS MUTATED   29  0   3   4  0   1   2   1  6  0
  NRAS WILD-TYPE 59  2   4  11  1   3   8   4  9  1
D5V6, multiclass
D5V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  NRAS MUTATED             1       3        5        6        4         3
  NRAS WILD-TYPE           3      13        5        7       14         4
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  NRAS MUTATED           5         2         1          1          7          7
  NRAS WILD-TYPE         4         5         7          5         11         14
                vv
clus             STAGE IV
  NRAS MUTATED          1
  NRAS WILD-TYPE        4
D5V8, multiclass

Clustering(6) Variable = OXA1L MUTATION ANALYSIS
D6V1, survival
                 sevent
clus2              0  1
  OXA1L MUTATED    1  2
  OXA1L WILD-TYPE 35 47
  OXA1L MUTATED OXA1L WILD-TYPE 
              3              82 
  OXA1L MUTATED OXA1L WILD-TYPE 
              2              47 
$`OXA1L MUTATED`
TCGA-DA-A1IA TCGA-EE-A181 TCGA-FW-A3R5 
        4.93         1.12         1.02 

$`OXA1L WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        5.13         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  OXA1L MUTATED OXA1L WILD-TYPE 
           1.02            0.20 
  OXA1L MUTATED OXA1L WILD-TYPE 
           4.93           98.76 
  OXA1L MUTATED OXA1L WILD-TYPE 
          1.120          12.595 
[1] "1.0 - 4.9 (1.1)"   "0.2 - 98.8 (12.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" "OXA1L WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A26D 
"OXA1L WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" "OXA1L WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A26D 
"OXA1L WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" "OXA1L WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A26D 
"OXA1L WILD-TYPE" 
[1] "hr=" "21" 
D6V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OXA1L MUTATED                    1             0
  OXA1L WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OXA1L MUTATED                                                                                          0
  OXA1L WILD-TYPE                                                                                       32
                 vv
clus              REGIONAL LYMPH NODE
  OXA1L MUTATED                     4
  OXA1L WILD-TYPE                 101
D6V3, multiclass
                                                                                          clus
vv                                                                                         OXA1L MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                  4
                                                                                          clus
vv                                                                                         OXA1L WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                  101
D6V4, binary
                 cls
clus               0  1
  OXA1L MUTATED    2  3
  OXA1L WILD-TYPE 57 99
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OXA1L MUTATED      2    3
  OXA1L WILD-TYPE   57   99
        clus
vv       OXA1L MUTATED OXA1L WILD-TYPE
  FEMALE             2              57
  MALE               3              99
                 vv
clus               M0  M1 M1A M1B M1C
  OXA1L MUTATED     5   0   0   0   0
  OXA1L WILD-TYPE 135   2   1   2   2
D6V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OXA1L MUTATED    2  0   1   1  1   0   0   0  0  0
  OXA1L WILD-TYPE 86  2   6  14  0   4  10   5 15  1
D6V6, multiclass
D6V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OXA1L MUTATED             0       0        0        0        2         0
  OXA1L WILD-TYPE           4      16       10       13       16         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OXA1L MUTATED           0         0         1          1          1
  OXA1L WILD-TYPE         9         7         7          5         17
                 vv
clus              STAGE IIIC STAGE IV
  OXA1L MUTATED            0        0
  OXA1L WILD-TYPE         21        5
D6V8, multiclass

Clustering(7) Variable = STK19 MUTATION ANALYSIS
D7V1, survival
                 sevent
clus2              0  1
  STK19 MUTATED    2  4
  STK19 WILD-TYPE 34 45
  STK19 MUTATED STK19 WILD-TYPE 
              6              79 
  STK19 MUTATED STK19 WILD-TYPE 
              4              45 
$`STK19 MUTATED`
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-GN-A266 
        2.86        48.79         1.12        12.20         4.27        10.09 

$`STK19 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        4.01        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
        6.31         1.35        36.07         5.13         8.81         7.96 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       37.97        11.15        38.63         4.41         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V 
        9.47        12.03         8.12         8.84         9.99         2.43 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 
       78.44         6.58         8.81         0.20         1.02        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       24.85        31.33        84.72        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  STK19 MUTATED STK19 WILD-TYPE 
           1.12            0.20 
  STK19 MUTATED STK19 WILD-TYPE 
          48.79           98.76 
  STK19 MUTATED STK19 WILD-TYPE 
           7.18           12.99 
[1] "1.1 - 48.8 (7.2)"  "0.2 - 98.8 (13.0)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"STK19 WILD-TYPE"   "STK19 MUTATED"   "STK19 MUTATED" "STK19 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A26D 
"STK19 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"STK19 WILD-TYPE"   "STK19 MUTATED"   "STK19 MUTATED" "STK19 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A26D 
"STK19 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"STK19 WILD-TYPE"   "STK19 MUTATED"   "STK19 MUTATED" "STK19 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A26D 
"STK19 WILD-TYPE" 
[1] "hr=" "1.9"
D7V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  STK19 MUTATED                    1             0
  STK19 WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  STK19 MUTATED                                                                                          2
  STK19 WILD-TYPE                                                                                       30
                 vv
clus              REGIONAL LYMPH NODE
  STK19 MUTATED                     7
  STK19 WILD-TYPE                  98
D7V3, multiclass
                                                                                          clus
vv                                                                                         STK19 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  7
                                                                                          clus
vv                                                                                         STK19 WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   98
D7V4, binary
                 cls
clus               0  1
  STK19 MUTATED    5  5
  STK19 WILD-TYPE 54 97
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK19 MUTATED      5    5
  STK19 WILD-TYPE   54   97
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  FEMALE             5              54
  MALE               5              97
                 vv
clus               M0  M1 M1A M1B M1C
  STK19 MUTATED     9   0   0   0   0
  STK19 WILD-TYPE 131   2   1   2   2
D7V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  STK19 MUTATED    5  0   0   1  0   0   1   1  1  0
  STK19 WILD-TYPE 83  2   7  14  1   4   9   4 14  1
D7V6, multiclass
D7V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  STK19 MUTATED             0       2        1        0        1         0
  STK19 WILD-TYPE           4      14        9       13       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  STK19 MUTATED           1         0         0          0          3
  STK19 WILD-TYPE         8         7         8          6         15
                 vv
clus              STAGE IIIC STAGE IV
  STK19 MUTATED            1        0
  STK19 WILD-TYPE         20        5
D7V8, multiclass

Clustering(8) Variable = PTEN MUTATION ANALYSIS
D8V1, survival
                sevent
clus2             0  1
  PTEN MUTATED    3  5
  PTEN WILD-TYPE 33 44
  PTEN MUTATED PTEN WILD-TYPE 
             8             77 
  PTEN MUTATED PTEN WILD-TYPE 
             5             44 
$`PTEN MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-EE-A17Z TCGA-EE-A29P 
       98.76         8.38         6.35        15.25         6.31        12.03 
TCGA-ER-A19J TCGA-FW-A3I3 
        4.18         0.20 

$`PTEN WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        70.16        28.08        22.55        10.26 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF 
       21.14        11.41        30.87        45.70        13.32        24.00 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        9.30         5.39         4.01         2.86        48.79        35.80 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
       51.12        10.03        39.19        13.68         9.99        44.52 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       36.69        25.15         4.93        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 
        7.00        17.56        14.83        11.57         1.12         1.35 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       12.20         4.27        36.07         5.13         8.81         7.96 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       37.97        11.15        38.63         4.41         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
        9.47         8.12         8.84         9.99         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
       11.31        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       11.11        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        8.81         1.02        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  PTEN MUTATED PTEN WILD-TYPE 
          0.20           1.02 
  PTEN MUTATED PTEN WILD-TYPE 
         98.76          84.72 
  PTEN MUTATED PTEN WILD-TYPE 
         7.365         12.990 
[1] "0.2 - 98.8 (7.4)"  "1.0 - 84.7 (13.0)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A26D 
"PTEN WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A26D 
"PTEN WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A26D 
"PTEN WILD-TYPE" 
[1] "hr=" "1.7"
D8V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  PTEN MUTATED                    1             0
  PTEN WILD-TYPE                 22             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PTEN MUTATED                                                                                          1
  PTEN WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  PTEN MUTATED                    11
  PTEN WILD-TYPE                  94
D8V3, multiclass
                                                                                          clus
vv                                                                                         PTEN MUTATED
  DISTANT METASTASIS                                                                                  1
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                11
                                                                                          clus
vv                                                                                         PTEN WILD-TYPE
  DISTANT METASTASIS                                                                                   22
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  94
D8V4, binary
                cls
clus              0  1
  PTEN MUTATED    6  7
  PTEN WILD-TYPE 53 95
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      6    7
  PTEN WILD-TYPE   53   95
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE            6             53
  MALE              7             95
                vv
clus              M0  M1 M1A M1B M1C
  PTEN MUTATED    11   2   0   0   0
  PTEN WILD-TYPE 129   0   1   2   2
D8V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PTEN MUTATED   11  0   0   0  0   0   1   0  1  0
  PTEN WILD-TYPE 77  2   7  15  1   4   9   5 14  1
D8V6, multiclass
D8V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PTEN MUTATED             0       0        1        4        1         2
  PTEN WILD-TYPE           4      16        9        9       17         5
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  PTEN MUTATED           1         1         0          0          0          1
  PTEN WILD-TYPE         8         6         8          6         18         20
                vv
clus             STAGE IV
  PTEN MUTATED          2
  PTEN WILD-TYPE        3
D8V8, multiclass

Clustering(9) Variable = RAC1 MUTATION ANALYSIS
D9V1, survival
                sevent
clus2             0  1
  RAC1 MUTATED    2  3
  RAC1 WILD-TYPE 34 46
  RAC1 MUTATED RAC1 WILD-TYPE 
             5             80 
  RAC1 MUTATED RAC1 WILD-TYPE 
             3             46 
$`RAC1 MUTATED`
TCGA-D9-A3Z1 TCGA-EE-A181 TCGA-EE-A29D TCGA-ER-A1A1 TCGA-GN-A266 
        4.01         1.12        11.15        78.44        10.09 

$`RAC1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
        5.13         8.81         7.96        37.97        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        1.08        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        9.99         2.43         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 
       28.64        42.84         6.58         8.81         0.20         1.02 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       15.35        24.85        31.33        84.72        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  RAC1 MUTATED RAC1 WILD-TYPE 
          1.12           0.20 
  RAC1 MUTATED RAC1 WILD-TYPE 
         78.44          98.76 
  RAC1 MUTATED RAC1 WILD-TYPE 
        10.090         12.595 
[1] "1.1 - 78.4 (10.1)" "0.2 - 98.8 (12.6)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A26D 
"RAC1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A26D 
"RAC1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A26D 
"RAC1 WILD-TYPE" 
[1] "hr=" "1.3"
D9V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  RAC1 MUTATED                    3             0
  RAC1 WILD-TYPE                 20             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  RAC1 MUTATED                                                                                          2
  RAC1 WILD-TYPE                                                                                       30
                vv
clus             REGIONAL LYMPH NODE
  RAC1 MUTATED                     7
  RAC1 WILD-TYPE                  98
D9V3, multiclass
                                                                                          clus
vv                                                                                         RAC1 MUTATED
  DISTANT METASTASIS                                                                                  3
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            2
  REGIONAL LYMPH NODE                                                                                 7
                                                                                          clus
vv                                                                                         RAC1 WILD-TYPE
  DISTANT METASTASIS                                                                                   20
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             30
  REGIONAL LYMPH NODE                                                                                  98
D9V4, binary
                cls
clus              0  1
  RAC1 MUTATED    4  8
  RAC1 WILD-TYPE 55 94
[1] "tbl2"
                cls
clus             [,1] [,2]
  RAC1 MUTATED      4    8
  RAC1 WILD-TYPE   55   94
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  FEMALE            4             55
  MALE              8             94
                vv
clus              M0  M1 M1A M1B M1C
  RAC1 MUTATED    10   0   0   0   0
  RAC1 WILD-TYPE 130   2   1   2   2
D9V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  RAC1 MUTATED    6  0   0   1  0   0   0   1  2  0
  RAC1 WILD-TYPE 82  2   7  14  1   4  10   4 13  1
D9V6, multiclass
D9V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RAC1 MUTATED             0       1        0        0        3         0
  RAC1 WILD-TYPE           4      15       10       13       15         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  RAC1 MUTATED           0         2         0          0          1          3
  RAC1 WILD-TYPE         9         5         8          6         17         18
                vv
clus             STAGE IV
  RAC1 MUTATED          0
  RAC1 WILD-TYPE        5
D9V8, multiclass

Clustering(10) Variable = IDH1 MUTATION ANALYSIS
D10V1, survival
                sevent
clus2             0  1
  IDH1 MUTATED    2  2
  IDH1 WILD-TYPE 34 47
  IDH1 MUTATED IDH1 WILD-TYPE 
             4             81 
  IDH1 MUTATED IDH1 WILD-TYPE 
             2             47 
$`IDH1 MUTATED`
TCGA-D9-A3Z1 TCGA-EE-A29A TCGA-EE-A29P TCGA-GN-A268 
        4.01         7.96        12.03        15.39 

$`IDH1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       36.07         5.13         8.81        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R 
        4.41         1.08        27.12         9.47         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        9.99         2.43         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        1.02        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        12.16        14.70 

  IDH1 MUTATED IDH1 WILD-TYPE 
          4.01           0.20 
  IDH1 MUTATED IDH1 WILD-TYPE 
         15.39          98.76 
  IDH1 MUTATED IDH1 WILD-TYPE 
         9.995         12.200 
[1] "4.0 - 15.4 (10.0)" "0.2 - 98.8 (12.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-GN-A26D 
"IDH1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-GN-A26D 
"IDH1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-GN-A26D 
"IDH1 WILD-TYPE" 
[1] "hr=" "1.5"
D10V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  IDH1 MUTATED                    1             0
  IDH1 WILD-TYPE                 22             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  IDH1 MUTATED                                                                                          1
  IDH1 WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  IDH1 MUTATED                     6
  IDH1 WILD-TYPE                  99
D10V3, multiclass
                                                                                          clus
vv                                                                                         IDH1 MUTATED
  DISTANT METASTASIS                                                                                  1
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                 6
                                                                                          clus
vv                                                                                         IDH1 WILD-TYPE
  DISTANT METASTASIS                                                                                   22
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  99
D10V4, binary
                cls
clus              0  1
  IDH1 MUTATED    4  4
  IDH1 WILD-TYPE 55 98
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH1 MUTATED      4    4
  IDH1 WILD-TYPE   55   98
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  FEMALE            4             55
  MALE              4             98
                vv
clus              M0  M1 M1A M1B M1C
  IDH1 MUTATED     8   0   0   0   0
  IDH1 WILD-TYPE 132   2   1   2   2
D10V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  IDH1 MUTATED    5  0   1   1  0   0   0   0  1  0
  IDH1 WILD-TYPE 83  2   6  14  1   4  10   5 14  1
D10V6, multiclass
D10V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  IDH1 MUTATED             0       0        1        0        1         1
  IDH1 WILD-TYPE           4      16        9       13       17         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  IDH1 MUTATED           1         1         0          1          0          1
  IDH1 WILD-TYPE         8         6         8          5         18         20
                vv
clus             STAGE IV
  IDH1 MUTATED          0
  IDH1 WILD-TYPE        5
D10V8, multiclass

Clustering(11) Variable = ACSM2B MUTATION ANALYSIS
D11V1, survival
                  sevent
clus2               0  1
  ACSM2B MUTATED    6 10
  ACSM2B WILD-TYPE 30 39
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              16               69 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              10               39 
$`ACSM2B MUTATED`
TCGA-D3-A2JF TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
       30.87         1.35        12.20         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29V TCGA-ER-A19M 
       11.15        38.63         1.08        27.12         2.43        28.64 
TCGA-ER-A1A1 TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A267 
       78.44         8.81         1.02        16.21 

$`ACSM2B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       11.57         6.31         1.12         4.27        36.07         5.13 
TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        4.41         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A3ET 
        3.52        11.11         4.18        12.99        42.84         6.58 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  ACSM2B MUTATED ACSM2B WILD-TYPE 
            1.02             0.20 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
           78.44            98.76 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
          11.675           12.160 
[1] "1.0 - 78.4 (11.7)" "0.2 - 98.8 (12.2)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
  "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-GN-A26D 
"ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
  "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-GN-A26D 
"ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
  "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-GN-A26D 
"ACSM2B WILD-TYPE" 
[1] "hr=" "1.1"
D11V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  ACSM2B MUTATED                    6             1
  ACSM2B WILD-TYPE                 17             0
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ACSM2B MUTATED                                                                                          3
  ACSM2B WILD-TYPE                                                                                       29
                  vv
clus               REGIONAL LYMPH NODE
  ACSM2B MUTATED                    21
  ACSM2B WILD-TYPE                  84
D11V3, multiclass
                                                                                          clus
vv                                                                                         ACSM2B MUTATED
  DISTANT METASTASIS                                                                                    6
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              3
  REGIONAL LYMPH NODE                                                                                  21
                                                                                          clus
vv                                                                                         ACSM2B WILD-TYPE
  DISTANT METASTASIS                                                                                     17
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               29
  REGIONAL LYMPH NODE                                                                                    84
D11V4, binary
                  cls
clus                0  1
  ACSM2B MUTATED    4 27
  ACSM2B WILD-TYPE 55 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACSM2B MUTATED      4   27
  ACSM2B WILD-TYPE   55   75
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  FEMALE              4               55
  MALE               27               75
                  vv
clus                M0  M1 M1A M1B M1C
  ACSM2B MUTATED    29   0   0   0   0
  ACSM2B WILD-TYPE 111   2   1   2   2
D11V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  ACSM2B MUTATED   19  0   2   4  1   1   0   0  2  0
  ACSM2B WILD-TYPE 69  2   5  11  0   3  10   5 13  1
D11V6, multiclass
D11V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ACSM2B MUTATED             1       5        2        4        3         1
  ACSM2B WILD-TYPE           3      11        8        9       15         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ACSM2B MUTATED           2         1         1          2          1
  ACSM2B WILD-TYPE         7         6         7          4         17
                  vv
clus               STAGE IIIC STAGE IV
  ACSM2B MUTATED            5        0
  ACSM2B WILD-TYPE         16        5
D11V8, multiclass

Clustering(12) Variable = PPP6C MUTATION ANALYSIS
D12V1, survival
                 sevent
clus2              0  1
  PPP6C MUTATED    6  2
  PPP6C WILD-TYPE 30 47
  PPP6C MUTATED PPP6C WILD-TYPE 
              8              77 
  PPP6C MUTATED PPP6C WILD-TYPE 
              2              47 
$`PPP6C MUTATED`
TCGA-D3-A3MV TCGA-DA-A1I1 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A29L TCGA-EE-A29R 
        5.39        39.19        17.56        14.83         1.08         8.84 
TCGA-FW-A3R5 TCGA-GN-A267 
        1.02        16.21 

$`PPP6C WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 
       15.25        45.70        13.32        24.00         9.30         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 
        2.86        48.79        35.80        51.12        10.03        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
        6.64        19.36         7.00        11.57         6.31         1.12 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        1.35        12.20         4.27        36.07         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M 
        7.96        37.97        11.15        38.63         4.41        27.12 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
        9.47        12.03         8.12         9.99         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
       11.31        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        6.58         8.81         0.20        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        15.39        12.16        14.70 

  PPP6C MUTATED PPP6C WILD-TYPE 
           1.02            0.20 
  PPP6C MUTATED PPP6C WILD-TYPE 
          39.19           98.76 
  PPP6C MUTATED PPP6C WILD-TYPE 
         11.835          12.160 
[1] "1.0 - 39.2 (11.8)" "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-GN-A26D 
"PPP6C WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-GN-A26D 
"PPP6C WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-GN-A26D 
"PPP6C WILD-TYPE" 
[1] "hr=" "1.9"
D12V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  PPP6C MUTATED                    1             0
  PPP6C WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PPP6C MUTATED                                                                                          4
  PPP6C WILD-TYPE                                                                                       28
                 vv
clus              REGIONAL LYMPH NODE
  PPP6C MUTATED                    10
  PPP6C WILD-TYPE                  95
D12V3, multiclass
                                                                                          clus
vv                                                                                         PPP6C MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             4
  REGIONAL LYMPH NODE                                                                                 10
                                                                                          clus
vv                                                                                         PPP6C WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              28
  REGIONAL LYMPH NODE                                                                                   95
D12V4, binary
                 cls
clus               0  1
  PPP6C MUTATED    5 10
  PPP6C WILD-TYPE 54 92
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PPP6C MUTATED      5   10
  PPP6C WILD-TYPE   54   92
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  FEMALE             5              54
  MALE              10              92
                 vv
clus               M0  M1 M1A M1B M1C
  PPP6C MUTATED    14   0   0   0   1
  PPP6C WILD-TYPE 126   2   1   2   1
D12V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PPP6C MUTATED    5  0   2   1  1   1   1   1  3  0
  PPP6C WILD-TYPE 83  2   5  14  0   3   9   4 12  1
D12V6, multiclass
D12V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PPP6C MUTATED             1       1        0        0        1         0
  PPP6C WILD-TYPE           3      15       10       13       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PPP6C MUTATED           1         1         1          1          3
  PPP6C WILD-TYPE         8         6         7          5         15
                 vv
clus              STAGE IIIC STAGE IV
  PPP6C MUTATED            4        1
  PPP6C WILD-TYPE         17        4
D12V8, multiclass

Clustering(13) Variable = LCE1B MUTATION ANALYSIS
D13V1, survival
                 sevent
clus2              0  1
  LCE1B MUTATED    1  2
  LCE1B WILD-TYPE 35 47
  LCE1B MUTATED LCE1B WILD-TYPE 
              3              82 
  LCE1B MUTATED LCE1B WILD-TYPE 
              2              47 
$`LCE1B MUTATED`
TCGA-EE-A185 TCGA-EE-A29M TCGA-GN-A266 
        4.27        27.12        10.09 

$`LCE1B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       38.63         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        0.20         1.02        15.35        24.85        31.33        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  LCE1B MUTATED LCE1B WILD-TYPE 
           4.27            0.20 
  LCE1B MUTATED LCE1B WILD-TYPE 
          27.12           98.76 
  LCE1B MUTATED LCE1B WILD-TYPE 
          10.09           12.18 
[1] "4.3 - 27.1 (10.1)" "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A26D 
"LCE1B WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A26D 
"LCE1B WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A26D 
"LCE1B WILD-TYPE" 
[1] "hr=" "1.5"
D13V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  LCE1B MUTATED                    1             1
  LCE1B WILD-TYPE                 22             0
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  LCE1B MUTATED                                                                                          2
  LCE1B WILD-TYPE                                                                                       30
                 vv
clus              REGIONAL LYMPH NODE
  LCE1B MUTATED                     5
  LCE1B WILD-TYPE                 100
D13V3, multiclass
                                                                                          clus
vv                                                                                         LCE1B MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  5
                                                                                          clus
vv                                                                                         LCE1B WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                  100
D13V4, binary
                 cls
clus               0  1
  LCE1B MUTATED    4  5
  LCE1B WILD-TYPE 55 97
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LCE1B MUTATED      4    5
  LCE1B WILD-TYPE   55   97
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  FEMALE             4              55
  MALE               5              97
                 vv
clus               M0  M1 M1A M1B M1C
  LCE1B MUTATED     8   0   0   0   0
  LCE1B WILD-TYPE 132   2   1   2   2
D13V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  LCE1B MUTATED    6  0   1   0  0   0   0   0  1  0
  LCE1B WILD-TYPE 82  2   6  15  1   4  10   5 14  1
D13V6, multiclass
D13V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  LCE1B MUTATED             0       0        1        1        2         0
  LCE1B WILD-TYPE           4      16        9       12       16         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  LCE1B MUTATED           2         0         0          0          1
  LCE1B WILD-TYPE         7         7         8          6         17
                 vv
clus              STAGE IIIC STAGE IV
  LCE1B MUTATED            1        0
  LCE1B WILD-TYPE         20        5
D13V8, multiclass

Clustering(14) Variable = MUC7 MUTATION ANALYSIS
D14V1, survival
                sevent
clus2             0  1
  MUC7 MUTATED    2  3
  MUC7 WILD-TYPE 34 46
  MUC7 MUTATED MUC7 WILD-TYPE 
             5             80 
  MUC7 MUTATED MUC7 WILD-TYPE 
             3             46 
$`MUC7 MUTATED`
TCGA-DA-A1IC TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E TCGA-ER-A3ET 
        6.64         1.12        11.15        38.63         6.58 

$`MUC7 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
        4.93        22.36        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L 
        5.13         8.81         7.96        37.97         4.41         1.08 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       27.12         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        2.43         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 
       42.84        78.44         8.81         0.20         1.02        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       24.85        31.33        84.72        10.09        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  MUC7 MUTATED MUC7 WILD-TYPE 
          1.12           0.20 
  MUC7 MUTATED MUC7 WILD-TYPE 
         38.63          98.76 
  MUC7 MUTATED MUC7 WILD-TYPE 
         6.640         12.595 
[1] "1.1 - 38.6 (6.6)"  "0.2 - 98.8 (12.6)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "MUC7 MUTATED"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A26D 
"MUC7 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "MUC7 MUTATED"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A26D 
"MUC7 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "MUC7 MUTATED"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A26D 
"MUC7 WILD-TYPE" 
[1] "hr=" "1.6"
D14V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  MUC7 MUTATED                    1             0
  MUC7 WILD-TYPE                 22             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  MUC7 MUTATED                                                                                          3
  MUC7 WILD-TYPE                                                                                       29
                vv
clus             REGIONAL LYMPH NODE
  MUC7 MUTATED                     7
  MUC7 WILD-TYPE                  98
D14V3, multiclass
                                                                                          clus
vv                                                                                         MUC7 MUTATED
  DISTANT METASTASIS                                                                                  1
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            3
  REGIONAL LYMPH NODE                                                                                 7
                                                                                          clus
vv                                                                                         MUC7 WILD-TYPE
  DISTANT METASTASIS                                                                                   22
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             29
  REGIONAL LYMPH NODE                                                                                  98
D14V4, binary
                cls
clus              0  1
  MUC7 MUTATED    3  8
  MUC7 WILD-TYPE 56 94
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC7 MUTATED      3    8
  MUC7 WILD-TYPE   56   94
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  FEMALE            3             56
  MALE              8             94
                vv
clus              M0  M1 M1A M1B M1C
  MUC7 MUTATED    11   0   0   0   0
  MUC7 WILD-TYPE 129   2   1   2   2
D14V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  MUC7 MUTATED    7  0   1   2  0   0   0   1  0  0
  MUC7 WILD-TYPE 81  2   6  13  1   4  10   4 15  1
D14V6, multiclass
D14V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  MUC7 MUTATED             0       1        1        0        4         0
  MUC7 WILD-TYPE           4      15        9       13       14         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  MUC7 MUTATED           1         0         0          1          2          1
  MUC7 WILD-TYPE         8         7         8          5         16         20
                vv
clus             STAGE IV
  MUC7 MUTATED          0
  MUC7 WILD-TYPE        5
D14V8, multiclass

Clustering(15) Variable = OR51S1 MUTATION ANALYSIS
D15V1, survival
                  sevent
clus2               0  1
  OR51S1 MUTATED    3  4
  OR51S1 WILD-TYPE 33 45
  OR51S1 MUTATED OR51S1 WILD-TYPE 
               7               78 
  OR51S1 MUTATED OR51S1 WILD-TYPE 
               4               45 
$`OR51S1 MUTATED`
TCGA-EE-A183 TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-FW-A3R5 TCGA-GN-A266 
       12.20         4.41        27.12         9.47         1.02        10.09 
TCGA-GN-A268 
       15.39 

$`OR51S1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 
       14.83        11.57         6.31         1.12         1.35         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       38.63         1.08        12.03         8.12         8.84         9.99 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        2.43         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         0.20        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       24.85        31.33        84.72        16.21        12.16        14.70 

  OR51S1 MUTATED OR51S1 WILD-TYPE 
            1.02             0.20 
  OR51S1 MUTATED OR51S1 WILD-TYPE 
           27.12            98.76 
  OR51S1 MUTATED OR51S1 WILD-TYPE 
          10.090           12.575 
[1] "1.0 - 27.1 (10.1)" "0.2 - 98.8 (12.6)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "OR51S1 MUTATED"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" 
      TCGA-GN-A26D 
"OR51S1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "OR51S1 MUTATED"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" 
      TCGA-GN-A26D 
"OR51S1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "OR51S1 MUTATED"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" 
      TCGA-GN-A26D 
"OR51S1 WILD-TYPE" 
[1] "hr=" "1.5"
D15V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  OR51S1 MUTATED                    2             1
  OR51S1 WILD-TYPE                 21             0
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR51S1 MUTATED                                                                                          3
  OR51S1 WILD-TYPE                                                                                       29
                  vv
clus               REGIONAL LYMPH NODE
  OR51S1 MUTATED                    11
  OR51S1 WILD-TYPE                  94
D15V3, multiclass
                                                                                          clus
vv                                                                                         OR51S1 MUTATED
  DISTANT METASTASIS                                                                                    2
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              3
  REGIONAL LYMPH NODE                                                                                  11
                                                                                          clus
vv                                                                                         OR51S1 WILD-TYPE
  DISTANT METASTASIS                                                                                     21
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               29
  REGIONAL LYMPH NODE                                                                                    94
D15V4, binary
                  cls
clus                0  1
  OR51S1 MUTATED    6 11
  OR51S1 WILD-TYPE 53 91
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51S1 MUTATED      6   11
  OR51S1 WILD-TYPE   53   91
        clus
vv       OR51S1 MUTATED OR51S1 WILD-TYPE
  FEMALE              6               53
  MALE               11               91
                  vv
clus                M0  M1 M1A M1B M1C
  OR51S1 MUTATED    15   0   0   0   0
  OR51S1 WILD-TYPE 125   2   1   2   2
D15V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OR51S1 MUTATED   13  0   1   0  1   0   0   0  0  0
  OR51S1 WILD-TYPE 75  2   6  15  0   4  10   5 15  1
D15V6, multiclass
D15V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR51S1 MUTATED             0       1        2        2        5         0
  OR51S1 WILD-TYPE           4      15        8       11       13         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR51S1 MUTATED           2         0         1          0          1
  OR51S1 WILD-TYPE         7         7         7          6         17
                  vv
clus               STAGE IIIC STAGE IV
  OR51S1 MUTATED            0        0
  OR51S1 WILD-TYPE         21        5
D15V8, multiclass

Clustering(16) Variable = NAP1L2 MUTATION ANALYSIS
D16V1, survival
                  sevent
clus2               0  1
  NAP1L2 MUTATED    4  4
  NAP1L2 WILD-TYPE 32 45
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               8               77 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               4               45 
$`NAP1L2 MUTATED`
TCGA-D3-A2JD TCGA-D3-A3C6 TCGA-DA-A1HV TCGA-EE-A182 TCGA-EE-A20F TCGA-EE-A29D 
       11.41        15.25        48.79         1.35         5.13        11.15 
TCGA-EE-A29M TCGA-FW-A3R5 
       27.12         1.02 

$`NAP1L2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3CC 
       10.26         8.38        21.14        30.87         6.35        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       35.80        51.12        10.03        39.19        13.68         9.99 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
       44.52        36.69        25.15         4.93        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A 
        1.12        12.20         4.27        36.07         8.81         7.96 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
       37.97        38.63         4.41         1.08         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        8.81         0.20        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
            1.02             0.20 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
           48.79            98.76 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
           11.28            12.20 
[1] "1.0 - 48.8 (11.3)" "0.2 - 98.8 (12.2)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A26D 
"NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A26D 
"NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A26D 
"NAP1L2 WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  NAP1L2 MUTATED                    4             1
  NAP1L2 WILD-TYPE                 19             0
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  NAP1L2 MUTATED                                                                                          2
  NAP1L2 WILD-TYPE                                                                                       30
                  vv
clus               REGIONAL LYMPH NODE
  NAP1L2 MUTATED                    10
  NAP1L2 WILD-TYPE                  95
D16V3, multiclass
                                                                                          clus
vv                                                                                         NAP1L2 MUTATED
  DISTANT METASTASIS                                                                                    4
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              2
  REGIONAL LYMPH NODE                                                                                  10
                                                                                          clus
vv                                                                                         NAP1L2 WILD-TYPE
  DISTANT METASTASIS                                                                                     19
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               30
  REGIONAL LYMPH NODE                                                                                    95
D16V4, binary
                  cls
clus                0  1
  NAP1L2 MUTATED    8  9
  NAP1L2 WILD-TYPE 51 93
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L2 MUTATED      8    9
  NAP1L2 WILD-TYPE   51   93
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  FEMALE              8               51
  MALE                9               93
                  vv
clus                M0  M1 M1A M1B M1C
  NAP1L2 MUTATED    16   0   0   0   0
  NAP1L2 WILD-TYPE 124   2   1   2   2
D16V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  NAP1L2 MUTATED   10  0   0   4  1   0   1   0  0  0
  NAP1L2 WILD-TYPE 78  2   7  11  0   4   9   5 15  1
D16V6, multiclass
D16V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  NAP1L2 MUTATED             1       1        0        3        4         0
  NAP1L2 WILD-TYPE           3      15       10       10       14         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  NAP1L2 MUTATED           1         0         1          0          2
  NAP1L2 WILD-TYPE         8         7         7          6         16
                  vv
clus               STAGE IIIC STAGE IV
  NAP1L2 MUTATED            3        0
  NAP1L2 WILD-TYPE         18        5
D16V8, multiclass

Clustering(17) Variable = PRB2 MUTATION ANALYSIS
D17V1, survival
                sevent
clus2             0  1
  PRB2 MUTATED    5  6
  PRB2 WILD-TYPE 31 43
  PRB2 MUTATED PRB2 WILD-TYPE 
            11             74 
  PRB2 MUTATED PRB2 WILD-TYPE 
             6             43 
$`PRB2 MUTATED`
TCGA-D3-A2JF TCGA-D9-A3Z1 TCGA-DA-A3F3 TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E 
       30.87         4.01         7.00         1.12        11.15        38.63 
TCGA-EE-A29N TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A0 TCGA-FW-A3R5 
        9.47         9.99         2.43        11.31         1.02 

$`PRB2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z3 
       45.70        13.32        24.00         9.30         5.39         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
        6.64        19.36        17.56        14.83        11.57         6.31 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        1.35        12.20         4.27        36.07         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29P 
        7.96        37.97         4.41         1.08        27.12        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        8.12         8.84         8.09        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         0.20        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       24.85        31.33        84.72        10.09        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  PRB2 MUTATED PRB2 WILD-TYPE 
          1.02           0.20 
  PRB2 MUTATED PRB2 WILD-TYPE 
         38.63          98.76 
  PRB2 MUTATED PRB2 WILD-TYPE 
          9.47          13.50 
[1] "1.0 - 38.6 (9.5)"  "0.2 - 98.8 (13.5)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A26D 
"PRB2 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A26D 
"PRB2 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A26D 
"PRB2 WILD-TYPE" 
[1] "hr=" "1.6"
D17V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  PRB2 MUTATED                    4             0
  PRB2 WILD-TYPE                 19             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PRB2 MUTATED                                                                                          1
  PRB2 WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  PRB2 MUTATED                    19
  PRB2 WILD-TYPE                  86
D17V3, multiclass
                                                                                          clus
vv                                                                                         PRB2 MUTATED
  DISTANT METASTASIS                                                                                  4
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                19
                                                                                          clus
vv                                                                                         PRB2 WILD-TYPE
  DISTANT METASTASIS                                                                                   19
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  86
D17V4, binary
                cls
clus              0  1
  PRB2 MUTATED    4 20
  PRB2 WILD-TYPE 55 82
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB2 MUTATED      4   20
  PRB2 WILD-TYPE   55   82
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  FEMALE            4             55
  MALE             20             82
                vv
clus              M0  M1 M1A M1B M1C
  PRB2 MUTATED    22   0   0   0   0
  PRB2 WILD-TYPE 118   2   1   2   2
D17V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PRB2 MUTATED   14  0   0   3  1   1   1   1  1  0
  PRB2 WILD-TYPE 74  2   7  12  0   3   9   4 14  1
D17V6, multiclass
D17V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PRB2 MUTATED             1       1        4        0        4         2
  PRB2 WILD-TYPE           3      15        6       13       14         5
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  PRB2 MUTATED           1         0         1          0          3          3
  PRB2 WILD-TYPE         8         7         7          6         15         18
                vv
clus             STAGE IV
  PRB2 MUTATED          0
  PRB2 WILD-TYPE        5
D17V8, multiclass

Clustering(18) Variable = TAF1A MUTATION ANALYSIS
D18V1, survival
                 sevent
clus2              0  1
  TAF1A MUTATED    0  4
  TAF1A WILD-TYPE 36 45
  TAF1A MUTATED TAF1A WILD-TYPE 
              4              81 
  TAF1A MUTATED TAF1A WILD-TYPE 
              4              45 
$`TAF1A MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A2JK TCGA-D3-A3CE TCGA-GN-A26A 
       16.47         6.35        13.32        12.16 

$`TAF1A WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       32.55        70.16        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-D3-A3CC 
        8.38        21.14        11.41        30.87        15.25        45.70 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       24.00         9.30         5.39         4.01         2.86        48.79 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       35.80        51.12        10.03        39.19        13.68         9.99 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
       44.52        36.69        25.15         4.93        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        1.12         1.35        12.20         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        8.81         7.96        37.97        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        1.08        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        9.99         2.43         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        1.02        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       16.21        15.39        14.70 

  TAF1A MUTATED TAF1A WILD-TYPE 
           6.35            0.20 
  TAF1A MUTATED TAF1A WILD-TYPE 
          16.47           98.76 
  TAF1A MUTATED TAF1A WILD-TYPE 
          12.74           12.03 
[1] "6.3 - 16.5 (12.7)" "0.2 - 98.8 (12.0)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" 
     TCGA-GN-A26D 
"TAF1A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" 
     TCGA-GN-A26D 
"TAF1A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" 
     TCGA-GN-A26D 
"TAF1A WILD-TYPE" 
[1] "hr=" "2.2"
D18V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  TAF1A MUTATED                    1             0
  TAF1A WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TAF1A MUTATED                                                                                          1
  TAF1A WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  TAF1A MUTATED                     8
  TAF1A WILD-TYPE                  97
D18V3, multiclass
                                                                                          clus
vv                                                                                         TAF1A MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  8
                                                                                          clus
vv                                                                                         TAF1A WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   97
D18V4, binary
                 cls
clus               0  1
  TAF1A MUTATED    5  5
  TAF1A WILD-TYPE 54 97
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAF1A MUTATED      5    5
  TAF1A WILD-TYPE   54   97
        clus
vv       TAF1A MUTATED TAF1A WILD-TYPE
  FEMALE             5              54
  MALE               5              97
                 vv
clus               M0  M1 M1A M1B M1C
  TAF1A MUTATED     9   0   0   1   0
  TAF1A WILD-TYPE 131   2   1   1   2
D18V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TAF1A MUTATED    4  0   1   1  0   0   2   0  2  0
  TAF1A WILD-TYPE 84  2   6  14  1   4   8   5 13  1
D18V6, multiclass
D18V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TAF1A MUTATED             0       1        1        1        1         0
  TAF1A WILD-TYPE           4      15        9       12       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TAF1A MUTATED           0         0         1          1          0
  TAF1A WILD-TYPE         9         7         7          5         18
                 vv
clus              STAGE IIIC STAGE IV
  TAF1A MUTATED            3        0
  TAF1A WILD-TYPE         18        5
D18V8, multiclass

Clustering(19) Variable = HIST1H2AA MUTATION ANALYSIS
D19V1, survival
                     sevent
clus2                  0  1
  HIST1H2AA MUTATED    1  1
  HIST1H2AA WILD-TYPE 35 48
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  2                  83 
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  1                  48 
$`HIST1H2AA MUTATED`
TCGA-EE-A29D TCGA-EE-A29M 
       11.15        27.12 

$`HIST1H2AA WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       38.63         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        0.20         1.02        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
              11.15                0.20 
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
              27.12               98.76 
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
             19.135              12.160 
[1] "11.2 - 27.1 (19.1)" "0.2 - 98.8 (12.2)" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D9-A3Z1          TCGA-D9-A3Z3          TCGA-DA-A1HV 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1HW          TCGA-DA-A1HY          TCGA-DA-A1I0 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I1          TCGA-DA-A1I2          TCGA-DA-A1I4 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I5          TCGA-DA-A1I7          TCGA-DA-A1I8 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1IA          TCGA-DA-A1IB          TCGA-DA-A1IC 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F2          TCGA-DA-A3F3          TCGA-DA-A3F5 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F8          TCGA-EE-A17X          TCGA-EE-A17Z 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A181          TCGA-EE-A182          TCGA-EE-A183 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A185          TCGA-EE-A20B          TCGA-EE-A20F 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A20H          TCGA-EE-A29A          TCGA-EE-A29C 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29D          TCGA-EE-A29E          TCGA-EE-A29H 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29L          TCGA-EE-A29M          TCGA-EE-A29N 
"HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29P          TCGA-EE-A29Q          TCGA-EE-A29R 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29S          TCGA-EE-A29V          TCGA-EE-A29X 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-ER-A19D 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19F          TCGA-ER-A19J          TCGA-ER-A19L 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19M          TCGA-ER-A19N          TCGA-ER-A1A1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1ZR          TCGA-FW-A3I3 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FW-A3R5          TCGA-GN-A261          TCGA-GN-A262 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A264          TCGA-GN-A265          TCGA-GN-A266 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A267          TCGA-GN-A268          TCGA-GN-A26A 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A26D 
"HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D9-A3Z1          TCGA-D9-A3Z3          TCGA-DA-A1HV 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1HW          TCGA-DA-A1HY          TCGA-DA-A1I0 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I1          TCGA-DA-A1I2          TCGA-DA-A1I4 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I5          TCGA-DA-A1I7          TCGA-DA-A1I8 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1IA          TCGA-DA-A1IB          TCGA-DA-A1IC 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F2          TCGA-DA-A3F3          TCGA-DA-A3F5 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F8          TCGA-EE-A17X          TCGA-EE-A17Z 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A181          TCGA-EE-A182          TCGA-EE-A183 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A185          TCGA-EE-A20B          TCGA-EE-A20F 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A20H          TCGA-EE-A29A          TCGA-EE-A29C 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29D          TCGA-EE-A29E          TCGA-EE-A29H 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29L          TCGA-EE-A29M          TCGA-EE-A29N 
"HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29P          TCGA-EE-A29Q          TCGA-EE-A29R 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29S          TCGA-EE-A29V          TCGA-EE-A29X 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-ER-A19D 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19F          TCGA-ER-A19J          TCGA-ER-A19L 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19M          TCGA-ER-A19N          TCGA-ER-A1A1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1ZR          TCGA-FW-A3I3 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FW-A3R5          TCGA-GN-A261          TCGA-GN-A262 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A264          TCGA-GN-A265          TCGA-GN-A266 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A267          TCGA-GN-A268          TCGA-GN-A26A 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A26D 
"HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D9-A3Z1          TCGA-D9-A3Z3          TCGA-DA-A1HV 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1HW          TCGA-DA-A1HY          TCGA-DA-A1I0 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I1          TCGA-DA-A1I2          TCGA-DA-A1I4 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I5          TCGA-DA-A1I7          TCGA-DA-A1I8 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1IA          TCGA-DA-A1IB          TCGA-DA-A1IC 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F2          TCGA-DA-A3F3          TCGA-DA-A3F5 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F8          TCGA-EE-A17X          TCGA-EE-A17Z 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A181          TCGA-EE-A182          TCGA-EE-A183 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A185          TCGA-EE-A20B          TCGA-EE-A20F 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A20H          TCGA-EE-A29A          TCGA-EE-A29C 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29D          TCGA-EE-A29E          TCGA-EE-A29H 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29L          TCGA-EE-A29M          TCGA-EE-A29N 
"HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29P          TCGA-EE-A29Q          TCGA-EE-A29R 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29S          TCGA-EE-A29V          TCGA-EE-A29X 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-ER-A19D 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19F          TCGA-ER-A19J          TCGA-ER-A19L 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19M          TCGA-ER-A19N          TCGA-ER-A1A1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1ZR          TCGA-FW-A3I3 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FW-A3R5          TCGA-GN-A261          TCGA-GN-A262 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A264          TCGA-GN-A265          TCGA-GN-A266 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A267          TCGA-GN-A268          TCGA-GN-A26A 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A26D 
"HIST1H2AA WILD-TYPE" 
[1] "Remove cluster labels:" "HIST1H2AA MUTATED"     
clus
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  2                  83 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D9-A3Z1          TCGA-D9-A3Z3          TCGA-DA-A1HV 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1HW          TCGA-DA-A1HY          TCGA-DA-A1I0 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I1          TCGA-DA-A1I2          TCGA-DA-A1I4 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I5          TCGA-DA-A1I7          TCGA-DA-A1I8 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1IA          TCGA-DA-A1IB          TCGA-DA-A1IC 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F2          TCGA-DA-A3F3          TCGA-DA-A3F5 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F8          TCGA-EE-A17X          TCGA-EE-A17Z 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A181          TCGA-EE-A182          TCGA-EE-A183 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A185          TCGA-EE-A20B          TCGA-EE-A20F 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A20H          TCGA-EE-A29A          TCGA-EE-A29C 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29E          TCGA-EE-A29H          TCGA-EE-A29L 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29N          TCGA-EE-A29P          TCGA-EE-A29Q 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29R          TCGA-EE-A29S          TCGA-EE-A29V 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29X          TCGA-EE-A2A0          TCGA-EE-A2A1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A2          TCGA-EE-A2A5          TCGA-EE-A2A6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19M          TCGA-ER-A19N 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A1A1          TCGA-ER-A3ET          TCGA-FS-A1ZR 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FW-A3I3          TCGA-FW-A3R5          TCGA-GN-A261 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A262          TCGA-GN-A264          TCGA-GN-A265 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A266          TCGA-GN-A267          TCGA-GN-A268 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A26A          TCGA-GN-A26D 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
D19V2, continuous
                     vv
clus                  DISTANT METASTASIS PRIMARY TUMOR
  HIST1H2AA MUTATED                    1             1
  HIST1H2AA WILD-TYPE                 22             0
                     vv
clus                  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  HIST1H2AA MUTATED                                                                                          0
  HIST1H2AA WILD-TYPE                                                                                       32
                     vv
clus                  REGIONAL LYMPH NODE
  HIST1H2AA MUTATED                     5
  HIST1H2AA WILD-TYPE                 100
D19V3, multiclass
                                                                                          clus
vv                                                                                         HIST1H2AA MUTATED
  DISTANT METASTASIS                                                                                       1
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 0
  REGIONAL LYMPH NODE                                                                                      5
                                                                                          clus
vv                                                                                         HIST1H2AA WILD-TYPE
  DISTANT METASTASIS                                                                                        22
  PRIMARY TUMOR                                                                                              0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                  32
  REGIONAL LYMPH NODE                                                                                      100
D19V4, binary
                     cls
clus                   0  1
  HIST1H2AA MUTATED    3  4
  HIST1H2AA WILD-TYPE 56 98
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  HIST1H2AA MUTATED      3    4
  HIST1H2AA WILD-TYPE   56   98
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  FEMALE                 3                  56
  MALE                   4                  98
                     vv
clus                   M0  M1 M1A M1B M1C
  HIST1H2AA MUTATED     7   0   0   0   0
  HIST1H2AA WILD-TYPE 133   2   1   2   2
D19V5, multiclass
                     vv
clus                  N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  HIST1H2AA MUTATED    6  0   0   1  0   0   0   0  0  0
  HIST1H2AA WILD-TYPE 82  2   7  14  1   4  10   5 15  1
D19V6, multiclass
D19V7, continuous
                     vv
clus                  I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  HIST1H2AA MUTATED             0       1        1        2        2         0
  HIST1H2AA WILD-TYPE           4      15        9       11       16         7
                     vv
clus                  STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  HIST1H2AA MUTATED           0         0         0          0          0
  HIST1H2AA WILD-TYPE         9         7         8          6         18
                     vv
clus                  STAGE IIIC STAGE IV
  HIST1H2AA MUTATED            1        0
  HIST1H2AA WILD-TYPE         20        5
D19V8, multiclass

Clustering(20) Variable = FRG2B MUTATION ANALYSIS
D20V1, survival
                 sevent
clus2              0  1
  FRG2B MUTATED    1  4
  FRG2B WILD-TYPE 35 45
  FRG2B MUTATED FRG2B WILD-TYPE 
              5              80 
  FRG2B MUTATED FRG2B WILD-TYPE 
              4              45 
$`FRG2B MUTATED`
TCGA-DA-A1HV TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A20H TCGA-EE-A29D 
       48.79         1.12         1.35         8.81        11.15 

$`FRG2B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        4.01         2.86        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       11.57         6.31        12.20         4.27        36.07         5.13 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
        7.96        37.97        38.63         4.41         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V 
        9.47        12.03         8.12         8.84         9.99         2.43 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 
       78.44         6.58         8.81         0.20         1.02        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       24.85        31.33        84.72        10.09        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  FRG2B MUTATED FRG2B WILD-TYPE 
           1.12            0.20 
  FRG2B MUTATED FRG2B WILD-TYPE 
          48.79           98.76 
  FRG2B MUTATED FRG2B WILD-TYPE 
          8.810          12.595 
[1] "1.1 - 48.8 (8.8)"  "0.2 - 98.8 (12.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A26D 
"FRG2B WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A26D 
"FRG2B WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A26D 
"FRG2B WILD-TYPE" 
[1] "hr=" "2.2"
D20V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  FRG2B MUTATED                    2             0
  FRG2B WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  FRG2B MUTATED                                                                                          2
  FRG2B WILD-TYPE                                                                                       30
                 vv
clus              REGIONAL LYMPH NODE
  FRG2B MUTATED                     6
  FRG2B WILD-TYPE                  99
D20V3, multiclass
                                                                                          clus
vv                                                                                         FRG2B MUTATED
  DISTANT METASTASIS                                                                                   2
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  6
                                                                                          clus
vv                                                                                         FRG2B WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   99
D20V4, binary
                 cls
clus               0  1
  FRG2B MUTATED    5  5
  FRG2B WILD-TYPE 54 97
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FRG2B MUTATED      5    5
  FRG2B WILD-TYPE   54   97
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  FEMALE             5              54
  MALE               5              97
                 vv
clus               M0  M1 M1A M1B M1C
  FRG2B MUTATED    10   0   0   0   0
  FRG2B WILD-TYPE 130   2   1   2   2
D20V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  FRG2B MUTATED    7  0   0   2  0   0   1   0  0  0
  FRG2B WILD-TYPE 81  2   7  13  1   4   9   5 15  1
D20V6, multiclass
D20V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  FRG2B MUTATED             0       2        2        0        3         0
  FRG2B WILD-TYPE           4      14        8       13       15         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  FRG2B MUTATED           0         0         0          0          1
  FRG2B WILD-TYPE         9         7         8          6         17
                 vv
clus              STAGE IIIC STAGE IV
  FRG2B MUTATED            2        0
  FRG2B WILD-TYPE         19        5
D20V8, multiclass

Clustering(21) Variable = CDH9 MUTATION ANALYSIS
D21V1, survival
                sevent
clus2             0  1
  CDH9 MUTATED    7  6
  CDH9 WILD-TYPE 29 43
  CDH9 MUTATED CDH9 WILD-TYPE 
            13             72 
  CDH9 MUTATED CDH9 WILD-TYPE 
             6             43 
$`CDH9 MUTATED`
TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A20B TCGA-EE-A29D TCGA-EE-A29E 
       17.56        11.57         1.12        36.07        11.15        38.63 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A2A0 TCGA-EE-A2A6 TCGA-ER-A19N TCGA-FW-A3R5 
        1.08        27.12        11.31         8.94        42.84         1.02 
TCGA-GN-A268 
       15.39 

$`CDH9 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 
        4.93        22.36         6.64        19.36         7.00        14.83 
TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20H 
        6.31         1.35        12.20         4.27         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        7.96        37.97         4.41         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         2.43         8.09        25.28        23.90 
TCGA-EE-A2A5 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        9.67         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       78.44         6.58         8.81         0.20        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        10.09        16.21        12.16        14.70 

  CDH9 MUTATED CDH9 WILD-TYPE 
          1.02           0.20 
  CDH9 MUTATED CDH9 WILD-TYPE 
         42.84          98.76 
  CDH9 MUTATED CDH9 WILD-TYPE 
         11.57          12.18 
[1] "1.0 - 42.8 (11.6)" "0.2 - 98.8 (12.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "CDH9 MUTATED"   "CDH9 MUTATED" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-GN-A26D 
"CDH9 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "CDH9 MUTATED"   "CDH9 MUTATED" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-GN-A26D 
"CDH9 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "CDH9 MUTATED"   "CDH9 MUTATED" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-GN-A26D 
"CDH9 WILD-TYPE" 
[1] "hr=" "1.3"
D21V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  CDH9 MUTATED                    3             1
  CDH9 WILD-TYPE                 20             0
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CDH9 MUTATED                                                                                          1
  CDH9 WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  CDH9 MUTATED                    22
  CDH9 WILD-TYPE                  83
D21V3, multiclass
                                                                                          clus
vv                                                                                         CDH9 MUTATED
  DISTANT METASTASIS                                                                                  3
  PRIMARY TUMOR                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                22
                                                                                          clus
vv                                                                                         CDH9 WILD-TYPE
  DISTANT METASTASIS                                                                                   20
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  83
D21V4, binary
                cls
clus              0  1
  CDH9 MUTATED   10 17
  CDH9 WILD-TYPE 49 85
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED     10   17
  CDH9 WILD-TYPE   49   85
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  FEMALE           10             49
  MALE             17             85
                vv
clus              M0  M1 M1A M1B M1C
  CDH9 MUTATED    26   0   0   0   0
  CDH9 WILD-TYPE 114   2   1   2   2
D21V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CDH9 MUTATED   20  0   0   2  1   1   0   0  2  0
  CDH9 WILD-TYPE 68  2   7  13  0   3  10   5 13  1
D21V6, multiclass
D21V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CDH9 MUTATED             0       4        5        1        5         2
  CDH9 WILD-TYPE           4      12        5       12       13         5
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  CDH9 MUTATED           3         0         1          0          1          3
  CDH9 WILD-TYPE         6         7         7          6         17         18
                vv
clus             STAGE IV
  CDH9 MUTATED          0
  CDH9 WILD-TYPE        5
D21V8, multiclass

Clustering(22) Variable = PRAMEF11 MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                 0  1
  PRAMEF11 MUTATED    0  6
  PRAMEF11 WILD-TYPE 36 43
  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
                 6                 79 
  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
                 6                 43 
$`PRAMEF11 MUTATED`
TCGA-D3-A1Q9 TCGA-D3-A2JD TCGA-EE-A29D TCGA-EE-A29X TCGA-ER-A19F TCGA-GN-A266 
       22.55        11.41        11.15         8.09        11.11        10.09 

$`PRAMEF11 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 
       16.47        32.55        70.16        98.76        28.08        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
        8.38        21.14        30.87         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        6.31         1.12         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
        5.13         8.81         7.96        37.97        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        1.08        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        9.99         2.43        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        8.94         3.52         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 
       78.44         6.58         8.81         0.20         1.02        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       24.85        31.33        84.72        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
              8.09               0.20 
  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
             22.55              98.76 
  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
             11.13              12.99 
[1] "8.1 - 22.6 (11.1)" "0.2 - 98.8 (13.0)"
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A26D 
"PRAMEF11 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A26D 
"PRAMEF11 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A26D 
"PRAMEF11 WILD-TYPE" 
[1] "hr=" "2.5"
D22V2, continuous
                    vv
clus                 DISTANT METASTASIS PRIMARY TUMOR
  PRAMEF11 MUTATED                    3             0
  PRAMEF11 WILD-TYPE                 20             1
                    vv
clus                 REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PRAMEF11 MUTATED                                                                                          3
  PRAMEF11 WILD-TYPE                                                                                       29
                    vv
clus                 REGIONAL LYMPH NODE
  PRAMEF11 MUTATED                     9
  PRAMEF11 WILD-TYPE                  96
D22V3, multiclass
                                                                                          clus
vv                                                                                         PRAMEF11 MUTATED
  DISTANT METASTASIS                                                                                      3
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                3
  REGIONAL LYMPH NODE                                                                                     9
                                                                                          clus
vv                                                                                         PRAMEF11 WILD-TYPE
  DISTANT METASTASIS                                                                                       20
  PRIMARY TUMOR                                                                                             1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 29
  REGIONAL LYMPH NODE                                                                                      96
D22V4, binary
                    cls
clus                  0  1
  PRAMEF11 MUTATED    6  9
  PRAMEF11 WILD-TYPE 53 93
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PRAMEF11 MUTATED      6    9
  PRAMEF11 WILD-TYPE   53   93
        clus
vv       PRAMEF11 MUTATED PRAMEF11 WILD-TYPE
  FEMALE                6                 53
  MALE                  9                 93
                    vv
clus                  M0  M1 M1A M1B M1C
  PRAMEF11 MUTATED    14   0   0   0   0
  PRAMEF11 WILD-TYPE 126   2   1   2   2
D22V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PRAMEF11 MUTATED    7  0   1   2  0   2   0   2  0  0
  PRAMEF11 WILD-TYPE 81  2   6  13  1   2  10   3 15  1
D22V6, multiclass
D22V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PRAMEF11 MUTATED             0       1        1        1        2         0
  PRAMEF11 WILD-TYPE           4      15        9       12       16         7
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PRAMEF11 MUTATED           1         0         1          2          2
  PRAMEF11 WILD-TYPE         8         7         7          4         16
                    vv
clus                 STAGE IIIC STAGE IV
  PRAMEF11 MUTATED            2        0
  PRAMEF11 WILD-TYPE         19        5
D22V8, multiclass

Clustering(23) Variable = HBG2 MUTATION ANALYSIS
D23V1, survival
                sevent
clus2             0  1
  HBG2 MUTATED    3  1
  HBG2 WILD-TYPE 33 48
  HBG2 MUTATED HBG2 WILD-TYPE 
             4             81 
  HBG2 MUTATED HBG2 WILD-TYPE 
             1             48 
$`HBG2 MUTATED`
TCGA-DA-A3F8 TCGA-EE-A29S TCGA-EE-A29V TCGA-FW-A3R5 
       14.83         9.99         2.43         1.02 

$`HBG2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       38.63         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.12         8.84         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       15.35        24.85        31.33        84.72        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  HBG2 MUTATED HBG2 WILD-TYPE 
          1.02           0.20 
  HBG2 MUTATED HBG2 WILD-TYPE 
         14.83          98.76 
  HBG2 MUTATED HBG2 WILD-TYPE 
          6.21          12.20 
[1] "1.0 - 14.8 (6.2)"  "0.2 - 98.8 (12.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
  "HBG2 MUTATED" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"HBG2 WILD-TYPE"   "HBG2 MUTATED"   "HBG2 MUTATED" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A26D 
"HBG2 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
  "HBG2 MUTATED" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"HBG2 WILD-TYPE"   "HBG2 MUTATED"   "HBG2 MUTATED" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A26D 
"HBG2 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
  "HBG2 MUTATED" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"HBG2 WILD-TYPE"   "HBG2 MUTATED"   "HBG2 MUTATED" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A26D 
"HBG2 WILD-TYPE" 
[1] "hr=" "1"  
D23V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  HBG2 MUTATED                    1             0
  HBG2 WILD-TYPE                 22             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  HBG2 MUTATED                                                                                          2
  HBG2 WILD-TYPE                                                                                       30
                vv
clus             REGIONAL LYMPH NODE
  HBG2 MUTATED                     4
  HBG2 WILD-TYPE                 101
D23V3, multiclass
                                                                                          clus
vv                                                                                         HBG2 MUTATED
  DISTANT METASTASIS                                                                                  1
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            2
  REGIONAL LYMPH NODE                                                                                 4
                                                                                          clus
vv                                                                                         HBG2 WILD-TYPE
  DISTANT METASTASIS                                                                                   22
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             30
  REGIONAL LYMPH NODE                                                                                 101
D23V4, binary
                cls
clus              0  1
  HBG2 MUTATED    2  5
  HBG2 WILD-TYPE 57 97
[1] "tbl2"
                cls
clus             [,1] [,2]
  HBG2 MUTATED      2    5
  HBG2 WILD-TYPE   57   97
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  FEMALE            2             57
  MALE              5             97
                vv
clus              M0  M1 M1A M1B M1C
  HBG2 MUTATED     7   0   0   0   0
  HBG2 WILD-TYPE 133   2   1   2   2
D23V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  HBG2 MUTATED    4  0   0   1  1   0   1   0  0  0
  HBG2 WILD-TYPE 84  2   7  14  0   4   9   5 15  1
D23V6, multiclass
D23V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  HBG2 MUTATED             0       0        0        0        2         1
  HBG2 WILD-TYPE           4      16       10       13       16         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  HBG2 MUTATED           0         1         1          0          1          1
  HBG2 WILD-TYPE         9         6         7          6         17         20
                vv
clus             STAGE IV
  HBG2 MUTATED          0
  HBG2 WILD-TYPE        5
D23V8, multiclass

Clustering(24) Variable = DDX3X MUTATION ANALYSIS
D24V1, survival
                 sevent
clus2              0  1
  DDX3X MUTATED    4  2
  DDX3X WILD-TYPE 32 47
  DDX3X MUTATED DDX3X WILD-TYPE 
              6              79 
  DDX3X MUTATED DDX3X WILD-TYPE 
              2              47 
$`DDX3X MUTATED`
TCGA-D3-A2J8 TCGA-DA-A1I0 TCGA-DA-A3F8 TCGA-EE-A20B TCGA-EE-A29E TCGA-EE-A2A1 
        8.38        10.03        14.83        36.07        38.63        25.28 

$`DDX3X WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26        21.14        11.41        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        48.79        35.80        51.12        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z 
        6.64        19.36         7.00        17.56        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20H 
        1.12         1.35        12.20         4.27         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
        7.96        37.97        11.15         4.41         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V 
        9.47        12.03         8.12         8.84         9.99         2.43 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
        8.09        11.31        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 
        6.58         8.81         0.20         1.02        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       31.33        84.72        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  DDX3X MUTATED DDX3X WILD-TYPE 
           8.38            0.20 
  DDX3X MUTATED DDX3X WILD-TYPE 
          38.63           98.76 
  DDX3X MUTATED DDX3X WILD-TYPE 
         20.055          12.030 
[1] "8.4 - 38.6 (20.1)" "0.2 - 98.8 (12.0)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
  "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A26D 
"DDX3X WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
  "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A26D 
"DDX3X WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
  "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A26D 
"DDX3X WILD-TYPE" 
[1] "hr=" "2.3"
D24V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  DDX3X MUTATED                    2             0
  DDX3X WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DDX3X MUTATED                                                                                          5
  DDX3X WILD-TYPE                                                                                       27
                 vv
clus              REGIONAL LYMPH NODE
  DDX3X MUTATED                     9
  DDX3X WILD-TYPE                  96
D24V3, multiclass
                                                                                          clus
vv                                                                                         DDX3X MUTATED
  DISTANT METASTASIS                                                                                   2
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             5
  REGIONAL LYMPH NODE                                                                                  9
                                                                                          clus
vv                                                                                         DDX3X WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              27
  REGIONAL LYMPH NODE                                                                                   96
D24V4, binary
                 cls
clus               0  1
  DDX3X MUTATED    3 13
  DDX3X WILD-TYPE 56 89
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DDX3X MUTATED      3   13
  DDX3X WILD-TYPE   56   89
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  FEMALE             3              56
  MALE              13              89
                 vv
clus               M0  M1 M1A M1B M1C
  DDX3X MUTATED    11   0   1   1   0
  DDX3X WILD-TYPE 129   2   0   1   2
D24V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DDX3X MUTATED    8  0   1   1  0   0   1   0  2  0
  DDX3X WILD-TYPE 80  2   6  14  1   4   9   5 13  1
D24V6, multiclass
D24V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DDX3X MUTATED             0       0        1        2        3         1
  DDX3X WILD-TYPE           4      16        9       11       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DDX3X MUTATED           1         0         0          0          3
  DDX3X WILD-TYPE         8         7         8          6         15
                 vv
clus              STAGE IIIC STAGE IV
  DDX3X MUTATED            1        0
  DDX3X WILD-TYPE         20        5
D24V8, multiclass

Clustering(25) Variable = PRB4 MUTATION ANALYSIS
D25V1, survival
                sevent
clus2             0  1
  PRB4 MUTATED    8  3
  PRB4 WILD-TYPE 28 46
  PRB4 MUTATED PRB4 WILD-TYPE 
            11             74 
  PRB4 MUTATED PRB4 WILD-TYPE 
             3             46 
$`PRB4 MUTATED`
TCGA-D3-A2JF TCGA-DA-A1I5 TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29P 
       30.87        44.52        14.83         1.12        11.15        12.03 
TCGA-EE-A2A1 TCGA-ER-A19F TCGA-ER-A19N TCGA-FW-A3R5 TCGA-GN-A265 
       25.28        11.11        42.84         1.02        84.72 

$`PRB4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
       13.68         9.99        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z 
        6.64        19.36         7.00        17.56        11.57         6.31 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        1.35        12.20         4.27        36.07         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
        7.96        37.97        38.63         4.41         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
        9.47         8.12         8.84         9.99         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19J 
       11.31        23.90         9.67         8.94         3.52         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       12.99        28.64        78.44         6.58         8.81         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       15.35        24.85        31.33        10.09        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  PRB4 MUTATED PRB4 WILD-TYPE 
          1.02           0.20 
  PRB4 MUTATED PRB4 WILD-TYPE 
         84.72          98.76 
  PRB4 MUTATED PRB4 WILD-TYPE 
        14.830         11.865 
[1] "1.0 - 84.7 (14.8)" "0.2 - 98.8 (11.9)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-GN-A26D 
"PRB4 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-GN-A26D 
"PRB4 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-GN-A26D 
"PRB4 WILD-TYPE" 
[1] "hr=" "2.8"
D25V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  PRB4 MUTATED                    2             0
  PRB4 WILD-TYPE                 21             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PRB4 MUTATED                                                                                          1
  PRB4 WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  PRB4 MUTATED                    15
  PRB4 WILD-TYPE                  90
D25V3, multiclass
                                                                                          clus
vv                                                                                         PRB4 MUTATED
  DISTANT METASTASIS                                                                                  2
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                15
                                                                                          clus
vv                                                                                         PRB4 WILD-TYPE
  DISTANT METASTASIS                                                                                   21
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  90
D25V4, binary
                cls
clus              0  1
  PRB4 MUTATED    4 14
  PRB4 WILD-TYPE 55 88
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB4 MUTATED      4   14
  PRB4 WILD-TYPE   55   88
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  FEMALE            4             55
  MALE             14             88
                vv
clus              M0  M1 M1A M1B M1C
  PRB4 MUTATED    15   0   0   0   1
  PRB4 WILD-TYPE 125   2   1   2   1
D25V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PRB4 MUTATED   13  0   0   1  1   0   1   0  0  0
  PRB4 WILD-TYPE 75  2   7  14  0   4   9   5 15  1
D25V6, multiclass
D25V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PRB4 MUTATED             0       3        2        1        3         0
  PRB4 WILD-TYPE           4      13        8       12       15         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  PRB4 MUTATED           1         1         1          0          1          1
  PRB4 WILD-TYPE         8         6         7          6         17         20
                vv
clus             STAGE IV
  PRB4 MUTATED          1
  PRB4 WILD-TYPE        4
D25V8, multiclass

Clustering(26) Variable = GRXCR1 MUTATION ANALYSIS
D26V1, survival
                  sevent
clus2               0  1
  GRXCR1 MUTATED    4  2
  GRXCR1 WILD-TYPE 32 47
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
               6               79 
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
               2               47 
$`GRXCR1 MUTATED`
TCGA-DA-A3F8 TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29S TCGA-GN-A265 TCGA-GN-A268 
       14.83         1.08        12.03         9.99        84.72        15.39 

$`GRXCR1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R 
       38.63         4.41        27.12         9.47         8.12         8.84 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        2.43         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 
       42.84        78.44         6.58         8.81         0.20         1.02 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A 
       15.35        24.85        31.33        10.09        16.21        12.16 
TCGA-GN-A26D 
       14.70 

  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
            1.08             0.20 
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
           84.72            98.76 
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
           13.43            12.16 
[1] "1.1 - 84.7 (13.4)" "0.2 - 98.8 (12.2)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
  "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A26D 
"GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
  "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A26D 
"GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
  "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A26D 
"GRXCR1 WILD-TYPE" 
[1] "hr=" "1.8"
D26V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  GRXCR1 MUTATED                    2             0
  GRXCR1 WILD-TYPE                 21             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  GRXCR1 MUTATED                                                                                          1
  GRXCR1 WILD-TYPE                                                                                       31
                  vv
clus               REGIONAL LYMPH NODE
  GRXCR1 MUTATED                    12
  GRXCR1 WILD-TYPE                  93
D26V3, multiclass
                                                                                          clus
vv                                                                                         GRXCR1 MUTATED
  DISTANT METASTASIS                                                                                    2
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              1
  REGIONAL LYMPH NODE                                                                                  12
                                                                                          clus
vv                                                                                         GRXCR1 WILD-TYPE
  DISTANT METASTASIS                                                                                     21
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               31
  REGIONAL LYMPH NODE                                                                                    93
D26V4, binary
                  cls
clus                0  1
  GRXCR1 MUTATED    5 10
  GRXCR1 WILD-TYPE 54 92
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRXCR1 MUTATED      5   10
  GRXCR1 WILD-TYPE   54   92
        clus
vv       GRXCR1 MUTATED GRXCR1 WILD-TYPE
  FEMALE              5               54
  MALE               10               92
                  vv
clus                M0  M1 M1A M1B M1C
  GRXCR1 MUTATED    14   0   0   0   0
  GRXCR1 WILD-TYPE 126   2   1   2   2
D26V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  GRXCR1 MUTATED   12  0   0   0  0   0   1   0  1  0
  GRXCR1 WILD-TYPE 76  2   7  15  1   4   9   5 14  1
D26V6, multiclass
D26V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GRXCR1 MUTATED             1       1        2        0        3         1
  GRXCR1 WILD-TYPE           3      15        8       13       15         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  GRXCR1 MUTATED           3         1         0          0          1
  GRXCR1 WILD-TYPE         6         6         8          6         17
                  vv
clus               STAGE IIIC STAGE IV
  GRXCR1 MUTATED            1        0
  GRXCR1 WILD-TYPE         20        5
D26V8, multiclass

Clustering(27) Variable = HHLA2 MUTATION ANALYSIS
D27V1, survival
                 sevent
clus2              0  1
  HHLA2 MUTATED    4  4
  HHLA2 WILD-TYPE 32 45
  HHLA2 MUTATED HHLA2 WILD-TYPE 
              8              77 
  HHLA2 MUTATED HHLA2 WILD-TYPE 
              4              45 
$`HHLA2 MUTATED`
TCGA-D3-A2J8 TCGA-DA-A1I7 TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A29E TCGA-EE-A29V 
        8.38        36.69         1.12         1.35        38.63         2.43 
TCGA-ER-A3ET TCGA-FW-A3R5 
        6.58         1.02 

$`HHLA2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26        21.14        11.41        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
       13.68         9.99        44.52        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        6.31        12.20         4.27        36.07         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
        7.96        37.97        11.15         4.41         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X 
        9.47        12.03         8.12         8.84         9.99         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
       11.31        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        8.81         0.20        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  HHLA2 MUTATED HHLA2 WILD-TYPE 
           1.02            0.20 
  HHLA2 MUTATED HHLA2 WILD-TYPE 
          38.63           98.76 
  HHLA2 MUTATED HHLA2 WILD-TYPE 
          4.505          12.990 
[1] "1.0 - 38.6 (4.5)"  "0.2 - 98.8 (13.0)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-GN-A26D 
"HHLA2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-GN-A26D 
"HHLA2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-GN-A26D 
"HHLA2 WILD-TYPE" 
[1] "hr=" "1.5"
D27V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  HHLA2 MUTATED                    4             0
  HHLA2 WILD-TYPE                 19             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  HHLA2 MUTATED                                                                                          3
  HHLA2 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  HHLA2 MUTATED                     5
  HHLA2 WILD-TYPE                 100
D27V3, multiclass
                                                                                          clus
vv                                                                                         HHLA2 MUTATED
  DISTANT METASTASIS                                                                                   4
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  5
                                                                                          clus
vv                                                                                         HHLA2 WILD-TYPE
  DISTANT METASTASIS                                                                                    19
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                  100
D27V4, binary
                 cls
clus               0  1
  HHLA2 MUTATED    4  8
  HHLA2 WILD-TYPE 55 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HHLA2 MUTATED      4    8
  HHLA2 WILD-TYPE   55   94
        clus
vv       HHLA2 MUTATED HHLA2 WILD-TYPE
  FEMALE             4              55
  MALE               8              94
                 vv
clus               M0  M1 M1A M1B M1C
  HHLA2 MUTATED    11   0   0   0   0
  HHLA2 WILD-TYPE 129   2   1   2   2
D27V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  HHLA2 MUTATED    5  0   1   3  1   0   1   0  0  0
  HHLA2 WILD-TYPE 83  2   6  12  0   4   9   5 15  1
D27V6, multiclass
D27V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  HHLA2 MUTATED             1       1        0        1        1         0
  HHLA2 WILD-TYPE           3      15       10       12       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  HHLA2 MUTATED           0         1         1          1          2
  HHLA2 WILD-TYPE         9         6         7          5         16
                 vv
clus              STAGE IIIC STAGE IV
  HHLA2 MUTATED            2        0
  HHLA2 WILD-TYPE         19        5
D27V8, multiclass

Clustering(28) Variable = RBM11 MUTATION ANALYSIS
D28V1, survival
                 sevent
clus2              0  1
  RBM11 MUTATED    4  1
  RBM11 WILD-TYPE 32 48
  RBM11 MUTATED RBM11 WILD-TYPE 
              5              80 
  RBM11 MUTATED RBM11 WILD-TYPE 
              1              48 
$`RBM11 MUTATED`
TCGA-DA-A1I5 TCGA-EE-A181 TCGA-EE-A29H TCGA-EE-A29S TCGA-FW-A3R5 
       44.52         1.12         4.41         9.99         1.02 

$`RBM11 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       39.19        13.68         9.99        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        5.13         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        1.08        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        2.43         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         0.20        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       24.85        31.33        84.72        10.09        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  RBM11 MUTATED RBM11 WILD-TYPE 
           1.02            0.20 
  RBM11 MUTATED RBM11 WILD-TYPE 
          44.52           98.76 
  RBM11 MUTATED RBM11 WILD-TYPE 
          4.410          12.595 
[1] "1.0 - 44.5 (4.4)"  "0.2 - 98.8 (12.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A26D 
"RBM11 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A26D 
"RBM11 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A26D 
"RBM11 WILD-TYPE" 
[1] "hr=" "1.6"
D28V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  RBM11 MUTATED                    1             0
  RBM11 WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  RBM11 MUTATED                                                                                          1
  RBM11 WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  RBM11 MUTATED                     9
  RBM11 WILD-TYPE                  96
D28V3, multiclass
                                                                                          clus
vv                                                                                         RBM11 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  9
                                                                                          clus
vv                                                                                         RBM11 WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   96
D28V4, binary
                 cls
clus               0  1
  RBM11 MUTATED    3  8
  RBM11 WILD-TYPE 56 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM11 MUTATED      3    8
  RBM11 WILD-TYPE   56   94
        clus
vv       RBM11 MUTATED RBM11 WILD-TYPE
  FEMALE             3              56
  MALE               8              94
                 vv
clus               M0  M1 M1A M1B M1C
  RBM11 MUTATED    10   0   0   0   1
  RBM11 WILD-TYPE 130   2   1   2   1
D28V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  RBM11 MUTATED    8  0   1   0  1   0   0   1  0  0
  RBM11 WILD-TYPE 80  2   6  15  0   4  10   4 15  1
D28V6, multiclass
D28V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RBM11 MUTATED             0       3        1        0        2         1
  RBM11 WILD-TYPE           4      13        9       13       16         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  RBM11 MUTATED           0         0         2          0          1
  RBM11 WILD-TYPE         9         7         6          6         17
                 vv
clus              STAGE IIIC STAGE IV
  RBM11 MUTATED            0        1
  RBM11 WILD-TYPE         21        4
D28V8, multiclass

Clustering(29) Variable = FUT9 MUTATION ANALYSIS
D29V1, survival
                sevent
clus2             0  1
  FUT9 MUTATED    3  5
  FUT9 WILD-TYPE 33 44
  FUT9 MUTATED FUT9 WILD-TYPE 
             8             77 
  FUT9 MUTATED FUT9 WILD-TYPE 
             5             44 
$`FUT9 MUTATED`
TCGA-D3-A1Q5 TCGA-DA-A1HV TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29N 
       32.55        48.79         1.12        11.15        38.63         9.47 
TCGA-FW-A3R5 TCGA-GN-A268 
        1.02        15.39 

$`FUT9 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        70.16        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
        8.38        21.14        11.41        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        6.31         1.35        12.20         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
        8.81         7.96        37.97         4.41         1.08        27.12 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
       12.03         8.12         8.84         9.99         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
       11.31        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        6.58         8.81         0.20        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        16.21        12.16        14.70 

  FUT9 MUTATED FUT9 WILD-TYPE 
          1.02           0.20 
  FUT9 MUTATED FUT9 WILD-TYPE 
         48.79          98.76 
  FUT9 MUTATED FUT9 WILD-TYPE 
         13.27          12.16 
[1] "1.0 - 48.8 (13.3)" "0.2 - 98.8 (12.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "FUT9 MUTATED"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" 
    TCGA-GN-A26D 
"FUT9 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "FUT9 MUTATED"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" 
    TCGA-GN-A26D 
"FUT9 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "FUT9 MUTATED"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" 
    TCGA-GN-A26D 
"FUT9 WILD-TYPE" 
[1] "hr=" "1"  
D29V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  FUT9 MUTATED                    3             0
  FUT9 WILD-TYPE                 20             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  FUT9 MUTATED                                                                                          1
  FUT9 WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  FUT9 MUTATED                    13
  FUT9 WILD-TYPE                  92
D29V3, multiclass
                                                                                          clus
vv                                                                                         FUT9 MUTATED
  DISTANT METASTASIS                                                                                  3
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                13
                                                                                          clus
vv                                                                                         FUT9 WILD-TYPE
  DISTANT METASTASIS                                                                                   20
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  92
D29V4, binary
                cls
clus              0  1
  FUT9 MUTATED    5 12
  FUT9 WILD-TYPE 54 90
[1] "tbl2"
                cls
clus             [,1] [,2]
  FUT9 MUTATED      5   12
  FUT9 WILD-TYPE   54   90
        clus
vv       FUT9 MUTATED FUT9 WILD-TYPE
  FEMALE            5             54
  MALE             12             90
                vv
clus              M0  M1 M1A M1B M1C
  FUT9 MUTATED    17   0   0   0   0
  FUT9 WILD-TYPE 123   2   1   2   2
D29V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  FUT9 MUTATED   13  0   0   2  1   0   1   0  0  0
  FUT9 WILD-TYPE 75  2   7  13  0   4   9   5 15  1
D29V6, multiclass
D29V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  FUT9 MUTATED             2       1        1        1        3         1
  FUT9 WILD-TYPE           2      15        9       12       15         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  FUT9 MUTATED           3         0         1          0          2          1
  FUT9 WILD-TYPE         6         7         7          6         16         20
                vv
clus             STAGE IV
  FUT9 MUTATED          0
  FUT9 WILD-TYPE        5
D29V8, multiclass

Clustering(30) Variable = TTN MUTATION ANALYSIS
D30V1, survival
               sevent
clus2            0  1
  TTN MUTATED   29 36
  TTN WILD-TYPE  7 13
  TTN MUTATED TTN WILD-TYPE 
           65            20 
  TTN MUTATED TTN WILD-TYPE 
           36            13 
$`TTN MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2JD 
       16.47        32.55        70.16        28.08         8.38        11.41 
TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3CE TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       30.87         6.35        13.32         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 
       48.79        35.80        51.12        10.03        39.19         9.99 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F5 
       44.52        36.69        25.15         4.93         6.64        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       14.83        11.57         1.12         1.35        12.20         4.27 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        5.13         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         2.43        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19M 
        9.67         8.94         3.52        11.11         4.18        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A262 TCGA-GN-A265 
       42.84        78.44         8.81         1.02        24.85        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

$`TTN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A3C6 TCGA-D3-A3CC 
       98.76        22.55        10.26        21.14        15.25        45.70 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 
       24.00         9.30        13.68        22.36        19.36         7.00 
TCGA-EE-A17Z TCGA-EE-A20B TCGA-EE-A29X TCGA-ER-A19L TCGA-ER-A3ET TCGA-FW-A3I3 
        6.31        36.07         8.09        12.99         6.58         0.20 
TCGA-GN-A261 TCGA-GN-A264 
       15.35        31.33 

  TTN MUTATED TTN WILD-TYPE 
         1.02          0.20 
  TTN MUTATED TTN WILD-TYPE 
        84.72         98.76 
  TTN MUTATED TTN WILD-TYPE 
        11.41         15.30 
[1] "1.0 - 84.7 (11.4)" "0.2 - 98.8 (15.3)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
[1] "hr=" "1"  
D30V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  TTN MUTATED                   18             1
  TTN WILD-TYPE                  5             0
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TTN MUTATED                                                                                         25
  TTN WILD-TYPE                                                                                        7
               vv
clus            REGIONAL LYMPH NODE
  TTN MUTATED                    83
  TTN WILD-TYPE                  22
D30V3, multiclass
                                                                                          clus
vv                                                                                         TTN MUTATED
  DISTANT METASTASIS                                                                                18
  PRIMARY TUMOR                                                                                      1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)          25
  REGIONAL LYMPH NODE                                                                               83
                                                                                          clus
vv                                                                                         TTN WILD-TYPE
  DISTANT METASTASIS                                                                                   5
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             7
  REGIONAL LYMPH NODE                                                                                 22
D30V4, binary
               cls
clus             0  1
  TTN MUTATED   43 84
  TTN WILD-TYPE 16 18
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     43   84
  TTN WILD-TYPE   16   18
        clus
vv       TTN MUTATED TTN WILD-TYPE
  FEMALE          43            16
  MALE            84            18
               vv
clus             M0  M1 M1A M1B M1C
  TTN MUTATED   112   1   1   1   1
  TTN WILD-TYPE  28   1   0   1   1
D30V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TTN MUTATED   71  1   6  14  1   3   5   3 12  1
  TTN WILD-TYPE 17  1   1   1  0   1   5   2  3  0
D30V6, multiclass
D30V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TTN MUTATED             4      13       10        9       17         4
  TTN WILD-TYPE           0       3        0        4        1         3
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  TTN MUTATED           6         5         5          5         15         16
  TTN WILD-TYPE         3         2         3          1          3          5
               vv
clus            STAGE IV
  TTN MUTATED          3
  TTN WILD-TYPE        2
D30V8, multiclass

Clustering(31) Variable = HBD MUTATION ANALYSIS
D31V1, survival
               sevent
clus2            0  1
  HBD MUTATED    2  5
  HBD WILD-TYPE 34 44
  HBD MUTATED HBD WILD-TYPE 
            7            78 
  HBD MUTATED HBD WILD-TYPE 
            5            44 
$`HBD MUTATED`
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A2A6 
        1.12         1.35         4.27        37.97        11.15         8.94 
TCGA-ER-A19M 
       28.64 

$`HBD WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F 
       14.83        11.57         6.31        12.20        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
        8.81         7.96        38.63         4.41         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V 
        9.47        12.03         8.12         8.84         9.99         2.43 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-ER-A19D 
        8.09        11.31        25.28        23.90         9.67         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       11.11         4.18        12.99        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        8.81         0.20         1.02        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        16.21        15.39        12.16        14.70 

  HBD MUTATED HBD WILD-TYPE 
         1.12          0.20 
  HBD MUTATED HBD WILD-TYPE 
        37.97         98.76 
  HBD MUTATED HBD WILD-TYPE 
        8.940        12.595 
[1] "1.1 - 38.0 (8.9)"  "0.2 - 98.8 (12.6)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
  "HBD MUTATED" "HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED"   "HBD MUTATED" "HBD WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
  "HBD MUTATED" "HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED"   "HBD MUTATED" "HBD WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
  "HBD MUTATED" "HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED"   "HBD MUTATED" "HBD WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
[1] "hr=" "1.7"
D31V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  HBD MUTATED                    1             0
  HBD WILD-TYPE                 22             1
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  HBD MUTATED                                                                                          0
  HBD WILD-TYPE                                                                                       32
               vv
clus            REGIONAL LYMPH NODE
  HBD MUTATED                     8
  HBD WILD-TYPE                  97
D31V3, multiclass
                                                                                          clus
vv                                                                                         HBD MUTATED
  DISTANT METASTASIS                                                                                 1
  PRIMARY TUMOR                                                                                      0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           0
  REGIONAL LYMPH NODE                                                                                8
                                                                                          clus
vv                                                                                         HBD WILD-TYPE
  DISTANT METASTASIS                                                                                  22
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            32
  REGIONAL LYMPH NODE                                                                                 97
D31V4, binary
               cls
clus             0  1
  HBD MUTATED    4  5
  HBD WILD-TYPE 55 97
[1] "tbl2"
               cls
clus            [,1] [,2]
  HBD MUTATED      4    5
  HBD WILD-TYPE   55   97
        clus
vv       HBD MUTATED HBD WILD-TYPE
  FEMALE           4            55
  MALE             5            97
               vv
clus             M0  M1 M1A M1B M1C
  HBD MUTATED     9   0   0   0   0
  HBD WILD-TYPE 131   2   1   2   2
D31V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  HBD MUTATED    6  0   0   2  0   0   0   0  1  0
  HBD WILD-TYPE 82  2   7  13  1   4  10   5 14  1
D31V6, multiclass
D31V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  HBD MUTATED             0       0        2        2        2         0
  HBD WILD-TYPE           4      16        8       11       16         7
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  HBD MUTATED           0         0         0          0          0          3
  HBD WILD-TYPE         9         7         8          6         18         18
               vv
clus            STAGE IV
  HBD MUTATED          0
  HBD WILD-TYPE        5
D31V8, multiclass

Clustering(32) Variable = KIAA1257 MUTATION ANALYSIS
D32V1, survival
                    sevent
clus2                 0  1
  KIAA1257 MUTATED    0  1
  KIAA1257 WILD-TYPE 36 48
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
                 1                 84 
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
                 1                 48 
$`KIAA1257 MUTATED`
TCGA-EE-A29L 
        1.08 

$`KIAA1257 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       11.15        38.63         4.41        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        8.81         0.20         1.02        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        16.21        15.39        12.16        14.70 

  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
              1.08               0.20 
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
              1.08              98.76 
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
              1.08              12.18 
[1] "1.1 - 1.1 (1.1)"   "0.2 - 98.8 (12.2)"
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "KIAA1257 MUTATED" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A26D 
"KIAA1257 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "KIAA1257 MUTATED" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A26D 
"KIAA1257 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
  "KIAA1257 MUTATED" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A26D 
"KIAA1257 WILD-TYPE" 
[1] "Remove cluster labels:" "KIAA1257 MUTATED"      
clus
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
                 1                 84 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29V         TCGA-EE-A29X         TCGA-EE-A2A0 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2A1         TCGA-EE-A2A2         TCGA-EE-A2A5 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2A6         TCGA-ER-A19D         TCGA-ER-A19F 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19M 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A1A1         TCGA-ER-A3ET 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZR         TCGA-FW-A3I3         TCGA-FW-A3R5 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A261         TCGA-GN-A262         TCGA-GN-A264 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A265         TCGA-GN-A266         TCGA-GN-A267 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A268         TCGA-GN-A26A         TCGA-GN-A26D 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
D32V2, continuous
                    vv
clus                 DISTANT METASTASIS PRIMARY TUMOR
  KIAA1257 MUTATED                    2             0
  KIAA1257 WILD-TYPE                 21             1
                    vv
clus                 REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  KIAA1257 MUTATED                                                                                          1
  KIAA1257 WILD-TYPE                                                                                       31
                    vv
clus                 REGIONAL LYMPH NODE
  KIAA1257 MUTATED                     4
  KIAA1257 WILD-TYPE                 101
D32V3, multiclass
                                                                                          clus
vv                                                                                         KIAA1257 MUTATED
  DISTANT METASTASIS                                                                                      2
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                1
  REGIONAL LYMPH NODE                                                                                     4
                                                                                          clus
vv                                                                                         KIAA1257 WILD-TYPE
  DISTANT METASTASIS                                                                                       21
  PRIMARY TUMOR                                                                                             1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 31
  REGIONAL LYMPH NODE                                                                                     101
D32V4, binary
                    cls
clus                  0  1
  KIAA1257 MUTATED    1  6
  KIAA1257 WILD-TYPE 58 96
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1257 MUTATED      1    6
  KIAA1257 WILD-TYPE   58   96
        clus
vv       KIAA1257 MUTATED KIAA1257 WILD-TYPE
  FEMALE                1                 58
  MALE                  6                 96
                    vv
clus                  M0  M1 M1A M1B M1C
  KIAA1257 MUTATED     5   0   0   0   0
  KIAA1257 WILD-TYPE 135   2   1   2   2
D32V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  KIAA1257 MUTATED    3  0   1   0  0   0   0   0  1  0
  KIAA1257 WILD-TYPE 85  2   6  15  1   4  10   5 14  1
D32V6, multiclass
D32V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  KIAA1257 MUTATED             1       1        0        0        1         0
  KIAA1257 WILD-TYPE           3      15       10       13       17         7
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  KIAA1257 MUTATED           0         0         0          0          1
  KIAA1257 WILD-TYPE         9         7         8          6         17
                    vv
clus                 STAGE IIIC STAGE IV
  KIAA1257 MUTATED            1        0
  KIAA1257 WILD-TYPE         20        5
D32V8, multiclass

Clustering(33) Variable = USP17L2 MUTATION ANALYSIS
D33V1, survival
                   sevent
clus2                0  1
  USP17L2 MUTATED    5  4
  USP17L2 WILD-TYPE 31 45
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                9                76 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                4                45 
$`USP17L2 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A2JF TCGA-DA-A1I4 TCGA-EE-A181 TCGA-EE-A20B TCGA-EE-A29M 
       70.16        30.87         9.99         1.12        36.07        27.12 
TCGA-EE-A2A2 TCGA-FW-A3R5 TCGA-GN-A266 
       23.90         1.02        10.09 

$`USP17L2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
        8.38        21.14        11.41         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
       44.52        36.69        25.15         4.93        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
        1.35        12.20         4.27         5.13         8.81         7.96 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
       37.97        11.15        38.63         4.41         1.08         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
       12.03         8.12         8.84         9.99         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       11.31        25.28         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        8.81         0.20        15.35        24.85        31.33        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  USP17L2 MUTATED USP17L2 WILD-TYPE 
             1.02              0.20 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
            70.16             98.76 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
           23.900            12.095 
[1] "1.0 - 70.2 (23.9)" "0.2 - 98.8 (12.1)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-GN-A26D 
"USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-GN-A26D 
"USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-GN-A26D 
"USP17L2 WILD-TYPE" 
[1] "hr=" "1.6"
D33V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  USP17L2 MUTATED                    2             1
  USP17L2 WILD-TYPE                 21             0
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  USP17L2 MUTATED                                                                                          5
  USP17L2 WILD-TYPE                                                                                       27
                   vv
clus                REGIONAL LYMPH NODE
  USP17L2 MUTATED                     8
  USP17L2 WILD-TYPE                  97
D33V3, multiclass
                                                                                          clus
vv                                                                                         USP17L2 MUTATED
  DISTANT METASTASIS                                                                                     2
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               5
  REGIONAL LYMPH NODE                                                                                    8
                                                                                          clus
vv                                                                                         USP17L2 WILD-TYPE
  DISTANT METASTASIS                                                                                      21
  PRIMARY TUMOR                                                                                            0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                27
  REGIONAL LYMPH NODE                                                                                     97
D33V4, binary
                   cls
clus                 0  1
  USP17L2 MUTATED    3 13
  USP17L2 WILD-TYPE 56 89
[1] "tbl2"
                   cls
clus                [,1] [,2]
  USP17L2 MUTATED      3   13
  USP17L2 WILD-TYPE   56   89
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  FEMALE               3                56
  MALE                13                89
                   vv
clus                 M0  M1 M1A M1B M1C
  USP17L2 MUTATED    15   0   0   0   0
  USP17L2 WILD-TYPE 125   2   1   2   2
D33V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  USP17L2 MUTATED   11  0   0   2  1   0   1   0  0  0
  USP17L2 WILD-TYPE 77  2   7  13  0   4   9   5 15  1
D33V6, multiclass
D33V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  USP17L2 MUTATED             0       1        3        1        5         1
  USP17L2 WILD-TYPE           4      15        7       12       13         6
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  USP17L2 MUTATED           0         0         2          0          2
  USP17L2 WILD-TYPE         9         7         6          6         16
                   vv
clus                STAGE IIIC STAGE IV
  USP17L2 MUTATED            0        0
  USP17L2 WILD-TYPE         21        5
D33V8, multiclass

Clustering(34) Variable = CADM2 MUTATION ANALYSIS
D34V1, survival
                 sevent
clus2              0  1
  CADM2 MUTATED    7  3
  CADM2 WILD-TYPE 29 46
  CADM2 MUTATED CADM2 WILD-TYPE 
             10              75 
  CADM2 MUTATED CADM2 WILD-TYPE 
              3              46 
$`CADM2 MUTATED`
TCGA-D3-A2JF TCGA-D3-A3MV TCGA-DA-A1HY TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A29E 
       30.87         5.39        51.12         8.81        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A2A2 TCGA-FW-A3R5 TCGA-GN-A268 
        4.41        23.90         1.02        15.39 

$`CADM2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       45.70        13.32        24.00         9.30         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       48.79        35.80        10.03        39.19        13.68         9.99 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
       44.52        36.69        25.15         4.93        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        1.12         1.35        12.20         4.27        36.07         5.13 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
        7.96        37.97         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       25.28         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        12.16        14.70 

  CADM2 MUTATED CADM2 WILD-TYPE 
           1.02            0.20 
  CADM2 MUTATED CADM2 WILD-TYPE 
          51.12           98.76 
  CADM2 MUTATED CADM2 WILD-TYPE 
          13.27           12.16 
[1] "1.0 - 51.1 (13.3)" "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "CADM2 MUTATED"   "CADM2 MUTATED"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-GN-A26D 
"CADM2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "CADM2 MUTATED"   "CADM2 MUTATED"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-GN-A26D 
"CADM2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "CADM2 MUTATED"   "CADM2 MUTATED"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-GN-A26D 
"CADM2 WILD-TYPE" 
[1] "hr=" "2"  
D34V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  CADM2 MUTATED                    4             0
  CADM2 WILD-TYPE                 19             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CADM2 MUTATED                                                                                          3
  CADM2 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  CADM2 MUTATED                    11
  CADM2 WILD-TYPE                  94
D34V3, multiclass
                                                                                          clus
vv                                                                                         CADM2 MUTATED
  DISTANT METASTASIS                                                                                   4
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                 11
                                                                                          clus
vv                                                                                         CADM2 WILD-TYPE
  DISTANT METASTASIS                                                                                    19
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   94
D34V4, binary
                 cls
clus               0  1
  CADM2 MUTATED    6 12
  CADM2 WILD-TYPE 53 90
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CADM2 MUTATED      6   12
  CADM2 WILD-TYPE   53   90
        clus
vv       CADM2 MUTATED CADM2 WILD-TYPE
  FEMALE             6              53
  MALE              12              90
                 vv
clus               M0  M1 M1A M1B M1C
  CADM2 MUTATED    18   0   0   0   0
  CADM2 WILD-TYPE 122   2   1   2   2
D34V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CADM2 MUTATED    9  0   1   4  1   1   0   1  1  0
  CADM2 WILD-TYPE 79  2   6  11  0   3  10   4 14  1
D34V6, multiclass
D34V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CADM2 MUTATED             0       3        2        0        0         0
  CADM2 WILD-TYPE           4      13        8       13       18         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CADM2 MUTATED           2         2         1          1          4
  CADM2 WILD-TYPE         7         5         7          5         14
                 vv
clus              STAGE IIIC STAGE IV
  CADM2 MUTATED            2        0
  CADM2 WILD-TYPE         19        5
D34V8, multiclass

Clustering(35) Variable = GFRAL MUTATION ANALYSIS
D35V1, survival
                 sevent
clus2              0  1
  GFRAL MUTATED    3  7
  GFRAL WILD-TYPE 33 42
  GFRAL MUTATED GFRAL WILD-TYPE 
             10              75 
  GFRAL MUTATED GFRAL WILD-TYPE 
              7              42 
$`GFRAL MUTATED`
TCGA-D3-A1Q8 TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29L 
       28.08         1.12        12.20        37.97        11.15         1.08 
TCGA-EE-A29Q TCGA-ER-A19M TCGA-FW-A3R5 TCGA-GN-A268 
        8.12        28.64         1.02        15.39 

$`GFRAL WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        70.16        98.76        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
        8.38        21.14        11.41        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       11.57         6.31         1.35         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N 
        8.81         7.96        38.63         4.41        27.12         9.47 
TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       12.03         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
        4.18        12.99        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        12.16        14.70 

  GFRAL MUTATED GFRAL WILD-TYPE 
           1.02            0.20 
  GFRAL MUTATED GFRAL WILD-TYPE 
          37.97           98.76 
  GFRAL MUTATED GFRAL WILD-TYPE 
         11.675          12.160 
[1] "1.0 - 38.0 (11.7)" "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-GN-A26D 
"GFRAL WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-GN-A26D 
"GFRAL WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-GN-A26D 
"GFRAL WILD-TYPE" 
[1] "hr=" "1.5"
D35V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  GFRAL MUTATED                    7             0
  GFRAL WILD-TYPE                 16             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  GFRAL MUTATED                                                                                          4
  GFRAL WILD-TYPE                                                                                       28
                 vv
clus              REGIONAL LYMPH NODE
  GFRAL MUTATED                    13
  GFRAL WILD-TYPE                  92
D35V3, multiclass
                                                                                          clus
vv                                                                                         GFRAL MUTATED
  DISTANT METASTASIS                                                                                   7
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             4
  REGIONAL LYMPH NODE                                                                                 13
                                                                                          clus
vv                                                                                         GFRAL WILD-TYPE
  DISTANT METASTASIS                                                                                    16
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              28
  REGIONAL LYMPH NODE                                                                                   92
D35V4, binary
                 cls
clus               0  1
  GFRAL MUTATED    8 16
  GFRAL WILD-TYPE 51 86
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRAL MUTATED      8   16
  GFRAL WILD-TYPE   51   86
        clus
vv       GFRAL MUTATED GFRAL WILD-TYPE
  FEMALE             8              51
  MALE              16              86
                 vv
clus               M0  M1 M1A M1B M1C
  GFRAL MUTATED    21   0   0   1   0
  GFRAL WILD-TYPE 119   2   1   1   2
D35V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  GFRAL MUTATED   16  0   0   1  1   0   0   2  2  0
  GFRAL WILD-TYPE 72  2   7  14  0   4  10   3 13  1
D35V6, multiclass
D35V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GFRAL MUTATED             3       2        0        2        3         1
  GFRAL WILD-TYPE           1      14       10       11       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  GFRAL MUTATED           3         2         2          0          1
  GFRAL WILD-TYPE         6         5         6          6         17
                 vv
clus              STAGE IIIC STAGE IV
  GFRAL MUTATED            2        1
  GFRAL WILD-TYPE         19        4
D35V8, multiclass

Clustering(36) Variable = OR4N2 MUTATION ANALYSIS
D36V1, survival
                 sevent
clus2              0  1
  OR4N2 MUTATED    7  4
  OR4N2 WILD-TYPE 29 45
  OR4N2 MUTATED OR4N2 WILD-TYPE 
             11              74 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
              4              45 
$`OR4N2 MUTATED`
TCGA-D3-A2JF TCGA-DA-A1I0 TCGA-DA-A3F8 TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29S 
       30.87        10.03        14.83        38.63        27.12         9.99 
TCGA-EE-A29V TCGA-ER-A19F TCGA-FW-A3R5 TCGA-GN-A262 TCGA-GN-A266 
        2.43        11.11         1.02        24.85        10.09 

$`OR4N2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        48.79        35.80        51.12        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z 
        6.64        19.36         7.00        17.56        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        1.12         1.35        12.20         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L 
        8.81         7.96        37.97        11.15         4.41         1.08 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29X TCGA-EE-A2A0 
        9.47        12.03         8.12         8.84         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19J 
       25.28        23.90         9.67         8.94         3.52         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
        0.20        15.35        31.33        84.72        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  OR4N2 MUTATED OR4N2 WILD-TYPE 
           1.02            0.20 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
          38.63           98.76 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
          11.11           12.18 
[1] "1.0 - 38.6 (11.1)" "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-GN-A26D 
"OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-GN-A26D 
"OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-GN-A26D 
"OR4N2 WILD-TYPE" 
[1] "hr=" "1.6"
D36V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OR4N2 MUTATED                    3             1
  OR4N2 WILD-TYPE                 20             0
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR4N2 MUTATED                                                                                          4
  OR4N2 WILD-TYPE                                                                                       28
                 vv
clus              REGIONAL LYMPH NODE
  OR4N2 MUTATED                    11
  OR4N2 WILD-TYPE                  94
D36V3, multiclass
                                                                                          clus
vv                                                                                         OR4N2 MUTATED
  DISTANT METASTASIS                                                                                   3
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             4
  REGIONAL LYMPH NODE                                                                                 11
                                                                                          clus
vv                                                                                         OR4N2 WILD-TYPE
  DISTANT METASTASIS                                                                                    20
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              28
  REGIONAL LYMPH NODE                                                                                   94
D36V4, binary
                 cls
clus               0  1
  OR4N2 MUTATED    2 17
  OR4N2 WILD-TYPE 57 85
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4N2 MUTATED      2   17
  OR4N2 WILD-TYPE   57   85
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  FEMALE             2              57
  MALE              17              85
                 vv
clus               M0  M1 M1A M1B M1C
  OR4N2 MUTATED    16   0   1   0   0
  OR4N2 WILD-TYPE 124   2   0   2   2
D36V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OR4N2 MUTATED   12  0   0   2  1   0   1   0  1  0
  OR4N2 WILD-TYPE 76  2   7  13  0   4   9   5 14  1
D36V6, multiclass
D36V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR4N2 MUTATED             1       0        3        2        3         1
  OR4N2 WILD-TYPE           3      16        7       11       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR4N2 MUTATED           1         0         1          0          2
  OR4N2 WILD-TYPE         8         7         7          6         16
                 vv
clus              STAGE IIIC STAGE IV
  OR4N2 MUTATED            2        0
  OR4N2 WILD-TYPE         19        5
D36V8, multiclass

Clustering(37) Variable = UGT2B15 MUTATION ANALYSIS
D37V1, survival
                   sevent
clus2                0  1
  UGT2B15 MUTATED    3  6
  UGT2B15 WILD-TYPE 33 43
  UGT2B15 MUTATED UGT2B15 WILD-TYPE 
                9                76 
  UGT2B15 MUTATED UGT2B15 WILD-TYPE 
                6                43 
$`UGT2B15 MUTATED`
TCGA-D3-A1Q8 TCGA-DA-A1HY TCGA-DA-A1I5 TCGA-DA-A1IC TCGA-EE-A185 TCGA-EE-A20H 
       28.08        51.12        44.52         6.64         4.27         8.81 
TCGA-EE-A29D TCGA-ER-A19M TCGA-FW-A3R5 
       11.15        28.64         1.02 

$`UGT2B15 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        70.16        98.76        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
        8.38        21.14        11.41        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        48.79        35.80        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 
        9.99        36.69        25.15         4.93        22.36        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
        7.00        17.56        14.83        11.57         6.31         1.12 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C 
        1.35        12.20        36.07         5.13         7.96        37.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       38.63         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
        4.18        12.99        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  UGT2B15 MUTATED UGT2B15 WILD-TYPE 
             1.02              0.20 
  UGT2B15 MUTATED UGT2B15 WILD-TYPE 
            51.12             98.76 
  UGT2B15 MUTATED UGT2B15 WILD-TYPE 
            11.15             12.18 
[1] "1.0 - 51.1 (11.2)" "0.2 - 98.8 (12.2)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-GN-A26D 
"UGT2B15 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-GN-A26D 
"UGT2B15 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-GN-A26D 
"UGT2B15 WILD-TYPE" 
[1] "hr=" "1.2"
D37V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  UGT2B15 MUTATED                    2             0
  UGT2B15 WILD-TYPE                 21             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  UGT2B15 MUTATED                                                                                          2
  UGT2B15 WILD-TYPE                                                                                       30
                   vv
clus                REGIONAL LYMPH NODE
  UGT2B15 MUTATED                    13
  UGT2B15 WILD-TYPE                  92
D37V3, multiclass
                                                                                          clus
vv                                                                                         UGT2B15 MUTATED
  DISTANT METASTASIS                                                                                     2
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               2
  REGIONAL LYMPH NODE                                                                                   13
                                                                                          clus
vv                                                                                         UGT2B15 WILD-TYPE
  DISTANT METASTASIS                                                                                      21
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                30
  REGIONAL LYMPH NODE                                                                                     92
D37V4, binary
                   cls
clus                 0  1
  UGT2B15 MUTATED    3 14
  UGT2B15 WILD-TYPE 56 88
[1] "tbl2"
                   cls
clus                [,1] [,2]
  UGT2B15 MUTATED      3   14
  UGT2B15 WILD-TYPE   56   88
        clus
vv       UGT2B15 MUTATED UGT2B15 WILD-TYPE
  FEMALE               3                56
  MALE                14                88
                   vv
clus                 M0  M1 M1A M1B M1C
  UGT2B15 MUTATED    13   0   0   1   1
  UGT2B15 WILD-TYPE 127   2   1   1   1
D37V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  UGT2B15 MUTATED    9  0   0   1  1   0   0   1  3  0
  UGT2B15 WILD-TYPE 79  2   7  14  0   4  10   4 12  1
D37V6, multiclass
D37V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  UGT2B15 MUTATED             0       5        0        1        1         0
  UGT2B15 WILD-TYPE           4      11       10       12       17         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  UGT2B15 MUTATED           1         0         1          0          1
  UGT2B15 WILD-TYPE         8         7         7          6         17
                   vv
clus                STAGE IIIC STAGE IV
  UGT2B15 MUTATED            3        2
  UGT2B15 WILD-TYPE         18        3
D37V8, multiclass

Clustering(38) Variable = UNC119B MUTATION ANALYSIS
D38V1, survival
                   sevent
clus2                0  1
  UNC119B WILD-TYPE 36 49
UNC119B WILD-TYPE 
               85 
[1] 49
$`UNC119B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       11.15        38.63         4.41         1.08        27.12         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
       12.03         8.12         8.84         9.99         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
       11.31        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 
        6.58         8.81         0.20         1.02        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       31.33        84.72        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

UNC119B WILD-TYPE 
              0.2 
UNC119B WILD-TYPE 
            98.76 
UNC119B WILD-TYPE 
            12.16 
[1] "0.2 - 98.8 (12.2)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A26D 
"UNC119B WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A26D 
"UNC119B WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A26D 
"UNC119B WILD-TYPE" 
D38V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  UNC119B MUTATED                    0             0
  UNC119B WILD-TYPE                 23             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  UNC119B MUTATED                                                                                          0
  UNC119B WILD-TYPE                                                                                       32
                   vv
clus                REGIONAL LYMPH NODE
  UNC119B MUTATED                     3
  UNC119B WILD-TYPE                 102
D38V3, multiclass
                                                                                          clus
vv                                                                                         UNC119B MUTATED
  DISTANT METASTASIS                                                                                     0
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               0
  REGIONAL LYMPH NODE                                                                                    3
                                                                                          clus
vv                                                                                         UNC119B WILD-TYPE
  DISTANT METASTASIS                                                                                      23
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                32
  REGIONAL LYMPH NODE                                                                                    102
D38V4, binary
                   cls
clus                  0   1
  UNC119B MUTATED     1   2
  UNC119B WILD-TYPE  58 100
[1] "tbl2"
                   cls
clus                [,1] [,2]
  UNC119B MUTATED      1    2
  UNC119B WILD-TYPE   58  100
        clus
vv       UNC119B MUTATED UNC119B WILD-TYPE
  FEMALE               1                58
  MALE                 2               100
                   vv
clus                 M0  M1 M1A M1B M1C
  UNC119B MUTATED     3   0   0   0   0
  UNC119B WILD-TYPE 137   2   1   2   2
D38V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  UNC119B MUTATED    3  0   0   0  0   0   0   0  0  0
  UNC119B WILD-TYPE 85  2   7  15  1   4  10   5 15  1
D38V6, multiclass
D38V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  UNC119B MUTATED             0       1        0        0        2         0
  UNC119B WILD-TYPE           4      15       10       13       16         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  UNC119B MUTATED           0         0         0          0          0
  UNC119B WILD-TYPE         9         7         8          6         18
                   vv
clus                STAGE IIIC STAGE IV
  UNC119B MUTATED            0        0
  UNC119B WILD-TYPE         21        5
D38V8, multiclass

Clustering(39) Variable = RAPGEF5 MUTATION ANALYSIS
D39V1, survival
                   sevent
clus2                0  1
  RAPGEF5 MUTATED    1  2
  RAPGEF5 WILD-TYPE 35 47
  RAPGEF5 MUTATED RAPGEF5 WILD-TYPE 
                3                82 
  RAPGEF5 MUTATED RAPGEF5 WILD-TYPE 
                2                47 
$`RAPGEF5 MUTATED`
TCGA-D3-A1Q6 TCGA-EE-A182 TCGA-FW-A3R5 
       70.16         1.35         1.02 

$`RAPGEF5 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
        8.38        21.14        11.41        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.12        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        5.13         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  RAPGEF5 MUTATED RAPGEF5 WILD-TYPE 
             1.02              0.20 
  RAPGEF5 MUTATED RAPGEF5 WILD-TYPE 
            70.16             98.76 
  RAPGEF5 MUTATED RAPGEF5 WILD-TYPE 
             1.35             12.18 
[1] "1.0 - 70.2 (1.4)"  "0.2 - 98.8 (12.2)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-GN-A26D 
"RAPGEF5 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-GN-A26D 
"RAPGEF5 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-GN-A26D 
"RAPGEF5 WILD-TYPE" 
[1] "hr=" "1.4"
D39V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  RAPGEF5 MUTATED                    1             0
  RAPGEF5 WILD-TYPE                 22             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  RAPGEF5 MUTATED                                                                                          4
  RAPGEF5 WILD-TYPE                                                                                       28
                   vv
clus                REGIONAL LYMPH NODE
  RAPGEF5 MUTATED                     3
  RAPGEF5 WILD-TYPE                 102
D39V3, multiclass
                                                                                          clus
vv                                                                                         RAPGEF5 MUTATED
  DISTANT METASTASIS                                                                                     1
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               4
  REGIONAL LYMPH NODE                                                                                    3
                                                                                          clus
vv                                                                                         RAPGEF5 WILD-TYPE
  DISTANT METASTASIS                                                                                      22
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                28
  REGIONAL LYMPH NODE                                                                                    102
D39V4, binary
                   cls
clus                 0  1
  RAPGEF5 MUTATED    1  7
  RAPGEF5 WILD-TYPE 58 95
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RAPGEF5 MUTATED      1    7
  RAPGEF5 WILD-TYPE   58   95
        clus
vv       RAPGEF5 MUTATED RAPGEF5 WILD-TYPE
  FEMALE               1                58
  MALE                 7                95
                   vv
clus                 M0  M1 M1A M1B M1C
  RAPGEF5 MUTATED     6   0   0   0   0
  RAPGEF5 WILD-TYPE 134   2   1   2   2
D39V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  RAPGEF5 MUTATED    2  0   1   2  1   0   0   0  0  0
  RAPGEF5 WILD-TYPE 86  2   6  13  0   4  10   5 15  1
D39V6, multiclass
D39V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RAPGEF5 MUTATED             0       0        0        0        1         1
  RAPGEF5 WILD-TYPE           4      16       10       13       17         6
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  RAPGEF5 MUTATED           0         0         2          0          1
  RAPGEF5 WILD-TYPE         9         7         6          6         17
                   vv
clus                STAGE IIIC STAGE IV
  RAPGEF5 MUTATED            1        0
  RAPGEF5 WILD-TYPE         20        5
D39V8, multiclass

Clustering(40) Variable = C8A MUTATION ANALYSIS
D40V1, survival
               sevent
clus2            0  1
  C8A MUTATED    5  8
  C8A WILD-TYPE 31 41
  C8A MUTATED C8A WILD-TYPE 
           13            72 
  C8A MUTATED C8A WILD-TYPE 
            8            41 
$`C8A MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A3MV TCGA-DA-A1I0 TCGA-DA-A1IC TCGA-DA-A3F8 
       98.76         8.38         5.39        10.03         6.64        14.83 
TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29L TCGA-EE-A2A2 TCGA-ER-A19F TCGA-FW-A3R5 
        1.12        11.15         1.08        23.90        11.11         1.02 
TCGA-GN-A266 
       10.09 

$`C8A WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        70.16        28.08        22.55        10.26 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       21.14        11.41        30.87         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       13.32        24.00         9.30         4.01         2.86        48.79 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
       35.80        51.12        39.19        13.68         9.99        44.52 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15         4.93        22.36        19.36         7.00 
TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       17.56        11.57         6.31         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E 
       36.07         5.13         8.81         7.96        37.97        38.63 
TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 
        9.99         2.43         8.09        11.31        25.28         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        8.94         3.52         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       78.44         6.58         8.81         0.20        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        16.21        15.39        12.16        14.70 

  C8A MUTATED C8A WILD-TYPE 
         1.02          0.20 
  C8A MUTATED C8A WILD-TYPE 
        98.76         84.72 
  C8A MUTATED C8A WILD-TYPE 
        10.03         13.50 
[1] "1.0 - 98.8 (10.0)" "0.2 - 84.7 (13.5)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
[1] "hr=" "1.8"
D40V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  C8A MUTATED                    3             0
  C8A WILD-TYPE                 20             1
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  C8A MUTATED                                                                                          4
  C8A WILD-TYPE                                                                                       28
               vv
clus            REGIONAL LYMPH NODE
  C8A MUTATED                    14
  C8A WILD-TYPE                  91
D40V3, multiclass
                                                                                          clus
vv                                                                                         C8A MUTATED
  DISTANT METASTASIS                                                                                 3
  PRIMARY TUMOR                                                                                      0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           4
  REGIONAL LYMPH NODE                                                                               14
                                                                                          clus
vv                                                                                         C8A WILD-TYPE
  DISTANT METASTASIS                                                                                  20
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            28
  REGIONAL LYMPH NODE                                                                                 91
D40V4, binary
               cls
clus             0  1
  C8A MUTATED    4 17
  C8A WILD-TYPE 55 85
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8A MUTATED      4   17
  C8A WILD-TYPE   55   85
        clus
vv       C8A MUTATED C8A WILD-TYPE
  FEMALE           4            55
  MALE            17            85
               vv
clus             M0  M1 M1A M1B M1C
  C8A MUTATED    17   0   1   0   0
  C8A WILD-TYPE 123   2   0   2   2
D40V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  C8A MUTATED   10  0   0   2  1   1   1   1  2  0
  C8A WILD-TYPE 78  2   7  13  0   3   9   4 13  1
D40V6, multiclass
D40V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  C8A MUTATED             2       0        1        2        2         1
  C8A WILD-TYPE           2      16        9       11       16         6
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  C8A MUTATED           1         0         1          0          4          3
  C8A WILD-TYPE         8         7         7          6         14         18
               vv
clus            STAGE IV
  C8A MUTATED          0
  C8A WILD-TYPE        5
D40V8, multiclass

Clustering(41) Variable = ANKRD20A4 MUTATION ANALYSIS
D41V1, survival
                     sevent
clus2                  0  1
  ANKRD20A4 MUTATED    3  0
  ANKRD20A4 WILD-TYPE 33 49
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  3                  82 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  0                  49 
$`ANKRD20A4 MUTATED`
TCGA-EE-A20F TCGA-EE-A29E TCGA-FW-A3R5 
        5.13        38.63         1.02 

$`ANKRD20A4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
        4.27        36.07         8.81         7.96        37.97        11.15 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
               1.02                0.20 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
              38.63               98.76 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
               5.13               12.18 
[1] "1.0 - 38.6 (5.1)"  "0.2 - 98.8 (12.2)"
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D9-A3Z1          TCGA-D9-A3Z3          TCGA-DA-A1HV 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1HW          TCGA-DA-A1HY          TCGA-DA-A1I0 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I1          TCGA-DA-A1I2          TCGA-DA-A1I4 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I5          TCGA-DA-A1I7          TCGA-DA-A1I8 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1IA          TCGA-DA-A1IB          TCGA-DA-A1IC 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F2          TCGA-DA-A3F3          TCGA-DA-A3F5 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F8          TCGA-EE-A17X          TCGA-EE-A17Z 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A181          TCGA-EE-A182          TCGA-EE-A183 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A185          TCGA-EE-A20B          TCGA-EE-A20F 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" 
         TCGA-EE-A20H          TCGA-EE-A29A          TCGA-EE-A29C 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29D          TCGA-EE-A29E          TCGA-EE-A29H 
"ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29L          TCGA-EE-A29M          TCGA-EE-A29N 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29P          TCGA-EE-A29Q          TCGA-EE-A29R 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29S          TCGA-EE-A29V          TCGA-EE-A29X 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-ER-A19D 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19F          TCGA-ER-A19J          TCGA-ER-A19L 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19M          TCGA-ER-A19N          TCGA-ER-A1A1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1ZR          TCGA-FW-A3I3 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FW-A3R5          TCGA-GN-A261          TCGA-GN-A262 
  "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A264          TCGA-GN-A265          TCGA-GN-A266 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A267          TCGA-GN-A268          TCGA-GN-A26A 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A26D 
"ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D9-A3Z1          TCGA-D9-A3Z3          TCGA-DA-A1HV 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1HW          TCGA-DA-A1HY          TCGA-DA-A1I0 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I1          TCGA-DA-A1I2          TCGA-DA-A1I4 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I5          TCGA-DA-A1I7          TCGA-DA-A1I8 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1IA          TCGA-DA-A1IB          TCGA-DA-A1IC 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F2          TCGA-DA-A3F3          TCGA-DA-A3F5 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F8          TCGA-EE-A17X          TCGA-EE-A17Z 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A181          TCGA-EE-A182          TCGA-EE-A183 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A185          TCGA-EE-A20B          TCGA-EE-A20F 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" 
         TCGA-EE-A20H          TCGA-EE-A29A          TCGA-EE-A29C 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29D          TCGA-EE-A29E          TCGA-EE-A29H 
"ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29L          TCGA-EE-A29M          TCGA-EE-A29N 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29P          TCGA-EE-A29Q          TCGA-EE-A29R 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29S          TCGA-EE-A29V          TCGA-EE-A29X 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-ER-A19D 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19F          TCGA-ER-A19J          TCGA-ER-A19L 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19M          TCGA-ER-A19N          TCGA-ER-A1A1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1ZR          TCGA-FW-A3I3 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FW-A3R5          TCGA-GN-A261          TCGA-GN-A262 
  "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A264          TCGA-GN-A265          TCGA-GN-A266 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A267          TCGA-GN-A268          TCGA-GN-A26A 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A26D 
"ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D9-A3Z1          TCGA-D9-A3Z3          TCGA-DA-A1HV 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1HW          TCGA-DA-A1HY          TCGA-DA-A1I0 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I1          TCGA-DA-A1I2          TCGA-DA-A1I4 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I5          TCGA-DA-A1I7          TCGA-DA-A1I8 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1IA          TCGA-DA-A1IB          TCGA-DA-A1IC 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F2          TCGA-DA-A3F3          TCGA-DA-A3F5 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F8          TCGA-EE-A17X          TCGA-EE-A17Z 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A181          TCGA-EE-A182          TCGA-EE-A183 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A185          TCGA-EE-A20B          TCGA-EE-A20F 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" 
         TCGA-EE-A20H          TCGA-EE-A29A          TCGA-EE-A29C 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29D          TCGA-EE-A29E          TCGA-EE-A29H 
"ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29L          TCGA-EE-A29M          TCGA-EE-A29N 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29P          TCGA-EE-A29Q          TCGA-EE-A29R 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29S          TCGA-EE-A29V          TCGA-EE-A29X 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-ER-A19D 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19F          TCGA-ER-A19J          TCGA-ER-A19L 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19M          TCGA-ER-A19N          TCGA-ER-A1A1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1ZR          TCGA-FW-A3I3 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FW-A3R5          TCGA-GN-A261          TCGA-GN-A262 
  "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A264          TCGA-GN-A265          TCGA-GN-A266 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A267          TCGA-GN-A268          TCGA-GN-A26A 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A26D 
"ANKRD20A4 WILD-TYPE" 
[1] "hr="     "2.5e+07"
D41V2, continuous
                     vv
clus                  DISTANT METASTASIS PRIMARY TUMOR
  ANKRD20A4 MUTATED                    0             0
  ANKRD20A4 WILD-TYPE                 23             1
                     vv
clus                  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ANKRD20A4 MUTATED                                                                                          0
  ANKRD20A4 WILD-TYPE                                                                                       32
                     vv
clus                  REGIONAL LYMPH NODE
  ANKRD20A4 MUTATED                     4
  ANKRD20A4 WILD-TYPE                 101
D41V3, multiclass
                                                                                          clus
vv                                                                                         ANKRD20A4 MUTATED
  DISTANT METASTASIS                                                                                       0
  PRIMARY TUMOR                                                                                            0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 0
  REGIONAL LYMPH NODE                                                                                      4
                                                                                          clus
vv                                                                                         ANKRD20A4 WILD-TYPE
  DISTANT METASTASIS                                                                                        23
  PRIMARY TUMOR                                                                                              1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                  32
  REGIONAL LYMPH NODE                                                                                      101
D41V4, binary
                     cls
clus                   0  1
  ANKRD20A4 MUTATED    0  4
  ANKRD20A4 WILD-TYPE 59 98
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  ANKRD20A4 MUTATED      0    4
  ANKRD20A4 WILD-TYPE   59   98
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  FEMALE                 0                  59
  MALE                   4                  98
                     vv
clus                   M0  M1 M1A M1B M1C
  ANKRD20A4 MUTATED     4   0   0   0   0
  ANKRD20A4 WILD-TYPE 136   2   1   2   2
D41V5, multiclass
                     vv
clus                  N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  ANKRD20A4 MUTATED    2  0   0   1  1   0   0   0  0  0
  ANKRD20A4 WILD-TYPE 86  2   7  14  0   4  10   5 15  1
D41V6, multiclass
D41V7, continuous
                     vv
clus                  I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ANKRD20A4 MUTATED             0       0        0        0        2         0
  ANKRD20A4 WILD-TYPE           4      16       10       13       16         7
                     vv
clus                  STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ANKRD20A4 MUTATED           0         0         1          0          1
  ANKRD20A4 WILD-TYPE         9         7         7          6         17
                     vv
clus                  STAGE IIIC STAGE IV
  ANKRD20A4 MUTATED            0        0
  ANKRD20A4 WILD-TYPE         21        5
D41V8, multiclass

Clustering(42) Variable = ELF5 MUTATION ANALYSIS
D42V1, survival
                sevent
clus2             0  1
  ELF5 MUTATED    0  1
  ELF5 WILD-TYPE 36 48
  ELF5 MUTATED ELF5 WILD-TYPE 
             1             84 
  ELF5 MUTATED ELF5 WILD-TYPE 
             1             48 
$`ELF5 MUTATED`
TCGA-D3-A2JD 
       11.41 

$`ELF5 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       38.63         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        8.81         0.20         1.02        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        16.21        15.39        12.16        14.70 

  ELF5 MUTATED ELF5 WILD-TYPE 
         11.41           0.20 
  ELF5 MUTATED ELF5 WILD-TYPE 
         11.41          98.76 
  ELF5 MUTATED ELF5 WILD-TYPE 
         11.41          12.18 
[1] "11.4 - 11.4 (11.4)" "0.2 - 98.8 (12.2)" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"ELF5 WILD-TYPE"   "ELF5 MUTATED" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A26D 
"ELF5 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"ELF5 WILD-TYPE"   "ELF5 MUTATED" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A26D 
"ELF5 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"ELF5 WILD-TYPE"   "ELF5 MUTATED" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A26D 
"ELF5 WILD-TYPE" 
[1] "Remove cluster labels:" "ELF5 MUTATED"          
clus
  ELF5 MUTATED ELF5 WILD-TYPE 
             1             84 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JF     TCGA-D3-A2JK     TCGA-D3-A3C6 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J     TCGA-ER-A19L 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1     TCGA-ER-A3ET 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5     TCGA-GN-A261 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
D42V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  ELF5 MUTATED                    1             0
  ELF5 WILD-TYPE                 22             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ELF5 MUTATED                                                                                          0
  ELF5 WILD-TYPE                                                                                       32
                vv
clus             REGIONAL LYMPH NODE
  ELF5 MUTATED                     3
  ELF5 WILD-TYPE                 102
D42V3, multiclass
                                                                                          clus
vv                                                                                         ELF5 MUTATED
  DISTANT METASTASIS                                                                                  1
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            0
  REGIONAL LYMPH NODE                                                                                 3
                                                                                          clus
vv                                                                                         ELF5 WILD-TYPE
  DISTANT METASTASIS                                                                                   22
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             32
  REGIONAL LYMPH NODE                                                                                 102
D42V4, binary
                cls
clus              0  1
  ELF5 MUTATED    1  3
  ELF5 WILD-TYPE 58 99
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF5 MUTATED      1    3
  ELF5 WILD-TYPE   58   99
        clus
vv       ELF5 MUTATED ELF5 WILD-TYPE
  FEMALE            1             58
  MALE              3             99
                vv
clus              M0  M1 M1A M1B M1C
  ELF5 MUTATED     3   0   0   0   0
  ELF5 WILD-TYPE 137   2   1   2   2
D42V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  ELF5 MUTATED    1  0   0   1  0   0   0   1  0  0
  ELF5 WILD-TYPE 87  2   7  14  1   4  10   4 15  1
D42V6, multiclass
D42V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ELF5 MUTATED             0       0        0        0        1         0
  ELF5 WILD-TYPE           4      16       10       13       17         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  ELF5 MUTATED           0         0         0          0          1          1
  ELF5 WILD-TYPE         9         7         8          6         17         20
                vv
clus             STAGE IV
  ELF5 MUTATED          0
  ELF5 WILD-TYPE        5
D42V8, multiclass

Clustering(43) Variable = SPAG16 MUTATION ANALYSIS
D43V1, survival
                  sevent
clus2               0  1
  SPAG16 MUTATED    2  4
  SPAG16 WILD-TYPE 34 45
  SPAG16 MUTATED SPAG16 WILD-TYPE 
               6               79 
  SPAG16 MUTATED SPAG16 WILD-TYPE 
               4               45 
$`SPAG16 MUTATED`
TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29X TCGA-EE-A2A5 TCGA-FW-A3R5 TCGA-GN-A266 
       38.63         9.47         8.09         9.67         1.02        10.09 

$`SPAG16 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29P TCGA-EE-A29Q 
       11.15         4.41         1.08        27.12        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         2.43        11.31        25.28        23.90 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         0.20        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       24.85        31.33        84.72        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  SPAG16 MUTATED SPAG16 WILD-TYPE 
            1.02             0.20 
  SPAG16 MUTATED SPAG16 WILD-TYPE 
           38.63            98.76 
  SPAG16 MUTATED SPAG16 WILD-TYPE 
            9.57            12.99 
[1] "1.0 - 38.6 (9.6)"  "0.2 - 98.8 (13.0)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-GN-A26D 
"SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-GN-A26D 
"SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-GN-A26D 
"SPAG16 WILD-TYPE" 
[1] "hr=" "1.8"
D43V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  SPAG16 MUTATED                    1             0
  SPAG16 WILD-TYPE                 22             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  SPAG16 MUTATED                                                                                          3
  SPAG16 WILD-TYPE                                                                                       29
                  vv
clus               REGIONAL LYMPH NODE
  SPAG16 MUTATED                     9
  SPAG16 WILD-TYPE                  96
D43V3, multiclass
                                                                                          clus
vv                                                                                         SPAG16 MUTATED
  DISTANT METASTASIS                                                                                    1
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              3
  REGIONAL LYMPH NODE                                                                                   9
                                                                                          clus
vv                                                                                         SPAG16 WILD-TYPE
  DISTANT METASTASIS                                                                                     22
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               29
  REGIONAL LYMPH NODE                                                                                    96
D43V4, binary
                  cls
clus                0  1
  SPAG16 MUTATED    3 10
  SPAG16 WILD-TYPE 56 92
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPAG16 MUTATED      3   10
  SPAG16 WILD-TYPE   56   92
        clus
vv       SPAG16 MUTATED SPAG16 WILD-TYPE
  FEMALE              3               56
  MALE               10               92
                  vv
clus                M0  M1 M1A M1B M1C
  SPAG16 MUTATED    11   0   0   0   0
  SPAG16 WILD-TYPE 129   2   1   2   2
D43V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  SPAG16 MUTATED    8  0   1   1  1   0   0   0  0  0
  SPAG16 WILD-TYPE 80  2   6  14  0   4  10   5 15  1
D43V6, multiclass
D43V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SPAG16 MUTATED             0       1        0        2        2         0
  SPAG16 WILD-TYPE           4      15       10       11       16         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SPAG16 MUTATED           2         0         1          0          2
  SPAG16 WILD-TYPE         7         7         7          6         16
                  vv
clus               STAGE IIIC STAGE IV
  SPAG16 MUTATED            0        0
  SPAG16 WILD-TYPE         21        5
D43V8, multiclass

Clustering(44) Variable = PHGDH MUTATION ANALYSIS
D44V1, survival
                 sevent
clus2              0  1
  PHGDH MUTATED    2  3
  PHGDH WILD-TYPE 34 46
  PHGDH MUTATED PHGDH WILD-TYPE 
              5              80 
  PHGDH MUTATED PHGDH WILD-TYPE 
              3              46 
$`PHGDH MUTATED`
TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-ER-A19F TCGA-FW-A3R5 TCGA-GN-A265 
       10.26        11.41        11.11         1.02        84.72 

$`PHGDH WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
        8.38        21.14        30.87         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        6.31         1.12         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        5.13         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L 
       23.90         9.67         8.94         3.52         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       15.35        24.85        31.33        10.09        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  PHGDH MUTATED PHGDH WILD-TYPE 
           1.02            0.20 
  PHGDH MUTATED PHGDH WILD-TYPE 
          84.72           98.76 
  PHGDH MUTATED PHGDH WILD-TYPE 
         11.110          12.595 
[1] "1.0 - 84.7 (11.1)" "0.2 - 98.8 (12.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-GN-A26D 
"PHGDH WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-GN-A26D 
"PHGDH WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-GN-A26D 
"PHGDH WILD-TYPE" 
[1] "hr=" "1.1"
D44V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  PHGDH MUTATED                    0             0
  PHGDH WILD-TYPE                 23             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PHGDH MUTATED                                                                                          1
  PHGDH WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  PHGDH MUTATED                     7
  PHGDH WILD-TYPE                  98
D44V3, multiclass
                                                                                          clus
vv                                                                                         PHGDH MUTATED
  DISTANT METASTASIS                                                                                   0
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  7
                                                                                          clus
vv                                                                                         PHGDH WILD-TYPE
  DISTANT METASTASIS                                                                                    23
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   98
D44V4, binary
                 cls
clus               0  1
  PHGDH MUTATED    0  8
  PHGDH WILD-TYPE 59 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PHGDH MUTATED      0    8
  PHGDH WILD-TYPE   59   94
        clus
vv       PHGDH MUTATED PHGDH WILD-TYPE
  FEMALE             0              59
  MALE               8              94
                 vv
clus               M0  M1 M1A M1B M1C
  PHGDH MUTATED     6   0   0   0   0
  PHGDH WILD-TYPE 134   2   1   2   2
D44V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PHGDH MUTATED    4  0   0   1  1   0   0   0  0  0
  PHGDH WILD-TYPE 84  2   7  14  0   4  10   5 15  1
D44V6, multiclass
D44V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PHGDH MUTATED             0       0        0        0        0         1
  PHGDH WILD-TYPE           4      16       10       13       18         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PHGDH MUTATED           2         0         1          0          0
  PHGDH WILD-TYPE         7         7         7          6         18
                 vv
clus              STAGE IIIC STAGE IV
  PHGDH MUTATED            1        0
  PHGDH WILD-TYPE         20        5
D44V8, multiclass

Clustering(45) Variable = COPG2 MUTATION ANALYSIS
D45V1, survival
                 sevent
clus2              0  1
  COPG2 MUTATED    1  1
  COPG2 WILD-TYPE 35 48
  COPG2 MUTATED COPG2 WILD-TYPE 
              2              83 
  COPG2 MUTATED COPG2 WILD-TYPE 
              1              48 
$`COPG2 MUTATED`
TCGA-D3-A2J6 TCGA-EE-A29Q 
       10.26         8.12 

$`COPG2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
        8.38        21.14        11.41        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       38.63         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        0.20         1.02        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  COPG2 MUTATED COPG2 WILD-TYPE 
           8.12            0.20 
  COPG2 MUTATED COPG2 WILD-TYPE 
          10.26           98.76 
  COPG2 MUTATED COPG2 WILD-TYPE 
           9.19           12.20 
[1] "8.1 - 10.3 (9.2)"  "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE"   "COPG2 MUTATED" "COPG2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE"   "COPG2 MUTATED" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A26D 
"COPG2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE"   "COPG2 MUTATED" "COPG2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE"   "COPG2 MUTATED" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A26D 
"COPG2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE"   "COPG2 MUTATED" "COPG2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE"   "COPG2 MUTATED" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A26D 
"COPG2 WILD-TYPE" 
[1] "Remove cluster labels:" "COPG2 MUTATED"         
clus
  COPG2 MUTATED COPG2 WILD-TYPE 
              2              83 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J8      TCGA-D3-A2J9 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK      TCGA-D3-A3C6 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29R      TCGA-EE-A29S 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0      TCGA-EE-A2A1 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6      TCGA-ER-A19D 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-ER-A19F      TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19M 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-ER-A19N      TCGA-ER-A1A1      TCGA-ER-A3ET      TCGA-FS-A1ZR 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-FW-A3R5      TCGA-GN-A261      TCGA-GN-A262 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
D45V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  COPG2 MUTATED                    0             0
  COPG2 WILD-TYPE                 23             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  COPG2 MUTATED                                                                                          1
  COPG2 WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  COPG2 MUTATED                     2
  COPG2 WILD-TYPE                 103
D45V3, multiclass
                                                                                          clus
vv                                                                                         COPG2 MUTATED
  DISTANT METASTASIS                                                                                   0
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  2
                                                                                          clus
vv                                                                                         COPG2 WILD-TYPE
  DISTANT METASTASIS                                                                                    23
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                  103
D45V4, binary
                 cls
clus                0   1
  COPG2 MUTATED     1   2
  COPG2 WILD-TYPE  58 100
[1] "tbl2"
                 cls
clus              [,1] [,2]
  COPG2 MUTATED      1    2
  COPG2 WILD-TYPE   58  100
        clus
vv       COPG2 MUTATED COPG2 WILD-TYPE
  FEMALE             1              58
  MALE               2             100
                 vv
clus               M0  M1 M1A M1B M1C
  COPG2 MUTATED     3   0   0   0   0
  COPG2 WILD-TYPE 137   2   1   2   2
D45V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  COPG2 MUTATED    3  0   0   0  0   0   0   0  0  0
  COPG2 WILD-TYPE 85  2   7  15  1   4  10   5 15  1
D45V6, multiclass
D45V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  COPG2 MUTATED             0       1        0        0        0         0
  COPG2 WILD-TYPE           4      15       10       13       18         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  COPG2 MUTATED           2         0         0          0          0
  COPG2 WILD-TYPE         7         7         8          6         18
                 vv
clus              STAGE IIIC STAGE IV
  COPG2 MUTATED            0        0
  COPG2 WILD-TYPE         21        5
D45V8, multiclass

Clustering(46) Variable = GML MUTATION ANALYSIS
D46V1, survival
               sevent
clus2            0  1
  GML MUTATED    1  1
  GML WILD-TYPE 35 48
  GML MUTATED GML WILD-TYPE 
            2            83 
  GML MUTATED GML WILD-TYPE 
            1            48 
$`GML MUTATED`
TCGA-DA-A1I7 TCGA-EE-A29D 
       36.69        11.15 

$`GML WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA 
       39.19        13.68         9.99        44.52        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E 
       36.07         5.13         8.81         7.96        37.97        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        0.20         1.02        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  GML MUTATED GML WILD-TYPE 
        11.15          0.20 
  GML MUTATED GML WILD-TYPE 
        36.69         98.76 
  GML MUTATED GML WILD-TYPE 
        23.92         12.16 
[1] "11.2 - 36.7 (23.9)" "0.2 - 98.8 (12.2)" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
[1] "Remove cluster labels:" "GML MUTATED"           
clus
  GML MUTATED GML WILD-TYPE 
            2            83 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I8    TCGA-DA-A1IA 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3    TCGA-FW-A3R5    TCGA-GN-A261 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
D46V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  GML MUTATED                    1             0
  GML WILD-TYPE                 22             1
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  GML MUTATED                                                                                          1
  GML WILD-TYPE                                                                                       31
               vv
clus            REGIONAL LYMPH NODE
  GML MUTATED                     6
  GML WILD-TYPE                  99
D46V3, multiclass
                                                                                          clus
vv                                                                                         GML MUTATED
  DISTANT METASTASIS                                                                                 1
  PRIMARY TUMOR                                                                                      0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           1
  REGIONAL LYMPH NODE                                                                                6
                                                                                          clus
vv                                                                                         GML WILD-TYPE
  DISTANT METASTASIS                                                                                  22
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            31
  REGIONAL LYMPH NODE                                                                                 99
D46V4, binary
               cls
clus             0  1
  GML MUTATED    1  7
  GML WILD-TYPE 58 95
[1] "tbl2"
               cls
clus            [,1] [,2]
  GML MUTATED      1    7
  GML WILD-TYPE   58   95
        clus
vv       GML MUTATED GML WILD-TYPE
  FEMALE           1            58
  MALE             7            95
               vv
clus             M0  M1 M1A M1B M1C
  GML MUTATED     7   0   0   0   0
  GML WILD-TYPE 133   2   1   2   2
D46V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  GML MUTATED    4  0   0   1  0   1   1   0  0  0
  GML WILD-TYPE 84  2   7  14  1   3   9   5 15  1
D46V6, multiclass
D46V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GML MUTATED             0       0        1        1        1         0
  GML WILD-TYPE           4      16        9       12       17         7
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  GML MUTATED           1         0         0          0          1          1
  GML WILD-TYPE         8         7         8          6         17         20
               vv
clus            STAGE IV
  GML MUTATED          0
  GML WILD-TYPE        5
D46V8, multiclass

Clustering(47) Variable = TBC1D3B MUTATION ANALYSIS
D47V1, survival
                   sevent
clus2                0  1
  TBC1D3B MUTATED    0  2
  TBC1D3B WILD-TYPE 36 47
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                2                83 
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                2                47 
$`TBC1D3B MUTATED`
TCGA-EE-A182 TCGA-GN-A266 
        1.35        10.09 

$`TBC1D3B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 
       14.83        11.57         6.31         1.12        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       38.63         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        8.81         0.20         1.02        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        16.21        15.39        12.16        14.70 

  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
             1.35              0.20 
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
            10.09             98.76 
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
             5.72             12.20 
[1] "1.4 - 10.1 (5.7)"  "0.2 - 98.8 (12.2)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "TBC1D3B MUTATED" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "TBC1D3B MUTATED" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A26D 
"TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "TBC1D3B MUTATED" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "TBC1D3B MUTATED" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A26D 
"TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "TBC1D3B MUTATED" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "TBC1D3B MUTATED" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A26D 
"TBC1D3B WILD-TYPE" 
[1] "Remove cluster labels:" "TBC1D3B MUTATED"       
clus
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                2                83 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5        TCGA-GN-A261 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265        TCGA-GN-A267 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
D47V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  TBC1D3B MUTATED                    1             0
  TBC1D3B WILD-TYPE                 22             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TBC1D3B MUTATED                                                                                          1
  TBC1D3B WILD-TYPE                                                                                       31
                   vv
clus                REGIONAL LYMPH NODE
  TBC1D3B MUTATED                     1
  TBC1D3B WILD-TYPE                 104
D47V3, multiclass
                                                                                          clus
vv                                                                                         TBC1D3B MUTATED
  DISTANT METASTASIS                                                                                     1
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               1
  REGIONAL LYMPH NODE                                                                                    1
                                                                                          clus
vv                                                                                         TBC1D3B WILD-TYPE
  DISTANT METASTASIS                                                                                      22
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                31
  REGIONAL LYMPH NODE                                                                                    104
D47V4, binary
                   cls
clus                  0   1
  TBC1D3B MUTATED     1   2
  TBC1D3B WILD-TYPE  58 100
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TBC1D3B MUTATED      1    2
  TBC1D3B WILD-TYPE   58  100
        clus
vv       TBC1D3B MUTATED TBC1D3B WILD-TYPE
  FEMALE               1                58
  MALE                 2               100
                   vv
clus                 M0  M1 M1A M1B M1C
  TBC1D3B MUTATED     2   0   0   0   0
  TBC1D3B WILD-TYPE 138   2   1   2   2
D47V5, multiclass
[1] "Remove cluster labels:" "TBC1D3B MUTATED"       
clus
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                2               145 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GU 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7        TCGA-EE-A2M8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME        TCGA-EE-A2MG 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ        TCGA-EE-A2MK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN        TCGA-EE-A2MP 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS        TCGA-EE-A2MT 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MU        TCGA-EE-A3AE        TCGA-EE-A3AH        TCGA-ER-A19D 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19M        TCGA-ER-A19O 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-FR-A3YO        TCGA-FS-A1YW 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1YX        TCGA-FS-A1YY        TCGA-FS-A1Z0        TCGA-FS-A1Z4 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZQ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FW-A3I3 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FW-A3R5        TCGA-GN-A261        TCGA-GN-A267        TCGA-GN-A268 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A26A 
"TBC1D3B WILD-TYPE" 
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TBC1D3B MUTATED    1  0   0   1  0   0   0   0  0  0
  TBC1D3B WILD-TYPE 87  2   7  14  1   4  10   5 15  1
D47V6, multiclass
[1] "Remove cluster labels:" "TBC1D3B MUTATED"       
clus
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                2               146 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GU 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7        TCGA-EE-A2M8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME        TCGA-EE-A2MG 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ        TCGA-EE-A2MK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN        TCGA-EE-A2MP 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS        TCGA-EE-A2MT 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MU        TCGA-EE-A3AE        TCGA-EE-A3AH        TCGA-ER-A19D 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19M        TCGA-ER-A19O 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-FR-A3YO        TCGA-FS-A1YW 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1YX        TCGA-FS-A1YY        TCGA-FS-A1Z0        TCGA-FS-A1Z4 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZQ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FW-A3I3 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FW-A3R5        TCGA-GN-A261        TCGA-GN-A267        TCGA-GN-A268 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
D47V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TBC1D3B MUTATED             0       0        0        0        0         1
  TBC1D3B WILD-TYPE           4      16       10       13       18         6
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TBC1D3B MUTATED           0         0         0          0          0
  TBC1D3B WILD-TYPE         9         7         8          6         18
                   vv
clus                STAGE IIIC STAGE IV
  TBC1D3B MUTATED            1        0
  TBC1D3B WILD-TYPE         20        5
D47V8, multiclass
[1] "Remove cluster labels:" "TBC1D3B MUTATED"       
clus
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                2               140 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0        TCGA-EE-A2A1 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6        TCGA-EE-A2GB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE        TCGA-EE-A2GH 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK        TCGA-EE-A2GL 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO        TCGA-EE-A2GP 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GU        TCGA-EE-A2M5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2M6        TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MD        TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MI        TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MM        TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MR        TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A3AE        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19J 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A19M        TCGA-ER-A19O        TCGA-ER-A1A1        TCGA-ER-A3ET 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FR-A3YO        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z4        TCGA-FS-A1ZA        TCGA-FS-A1ZB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZC        TCGA-FS-A1ZD        TCGA-FS-A1ZE        TCGA-FS-A1ZF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZK        TCGA-FS-A1ZM 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZP        TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZZ        TCGA-FW-A3I3        TCGA-FW-A3R5        TCGA-GN-A261 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 

Clustering(48) Variable = TFEC MUTATION ANALYSIS
D48V1, survival
                sevent
clus2             0  1
  TFEC MUTATED    7  4
  TFEC WILD-TYPE 29 45
  TFEC MUTATED TFEC WILD-TYPE 
            11             74 
  TFEC MUTATED TFEC WILD-TYPE 
             4             45 
$`TFEC MUTATED`
TCGA-D3-A3MO TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-EE-A182 TCGA-EE-A20F TCGA-EE-A29D 
        9.30        48.79        39.19         1.35         5.13        11.15 
TCGA-EE-A29E TCGA-EE-A29R TCGA-EE-A2A2 TCGA-ER-A19M TCGA-FW-A3R5 
       38.63         8.84        23.90        28.64         1.02 

$`TFEC WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MV TCGA-D9-A3Z1 
       15.25        45.70        13.32        24.00         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 
        2.86        35.80        51.12        10.03        13.68         9.99 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
       44.52        36.69        25.15         4.93        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A 
        1.12        12.20         4.27        36.07         8.81         7.96 
TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       37.97         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.12         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         0.20        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       24.85        31.33        84.72        10.09        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  TFEC MUTATED TFEC WILD-TYPE 
          1.02           0.20 
  TFEC MUTATED TFEC WILD-TYPE 
         48.79          98.76 
  TFEC MUTATED TFEC WILD-TYPE 
         11.15          12.18 
[1] "1.0 - 48.8 (11.2)" "0.2 - 98.8 (12.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "TFEC MUTATED"   "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-GN-A26D 
"TFEC WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "TFEC MUTATED"   "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-GN-A26D 
"TFEC WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "TFEC MUTATED"   "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
  "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-GN-A26D 
"TFEC WILD-TYPE" 
[1] "hr=" "1.7"
D48V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  TFEC MUTATED                    2             0
  TFEC WILD-TYPE                 21             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TFEC MUTATED                                                                                          3
  TFEC WILD-TYPE                                                                                       29
                vv
clus             REGIONAL LYMPH NODE
  TFEC MUTATED                    10
  TFEC WILD-TYPE                  95
D48V3, multiclass
                                                                                          clus
vv                                                                                         TFEC MUTATED
  DISTANT METASTASIS                                                                                  2
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            3
  REGIONAL LYMPH NODE                                                                                10
                                                                                          clus
vv                                                                                         TFEC WILD-TYPE
  DISTANT METASTASIS                                                                                   21
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             29
  REGIONAL LYMPH NODE                                                                                  95
D48V4, binary
                cls
clus              0  1
  TFEC MUTATED    5 10
  TFEC WILD-TYPE 54 92
[1] "tbl2"
                cls
clus             [,1] [,2]
  TFEC MUTATED      5   10
  TFEC WILD-TYPE   54   92
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  FEMALE            5             54
  MALE             10             92
                vv
clus              M0  M1 M1A M1B M1C
  TFEC MUTATED    14   0   0   0   0
  TFEC WILD-TYPE 126   2   1   2   2
D48V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TFEC MUTATED    5  0   0   5  1   0   1   1  1  0
  TFEC WILD-TYPE 83  2   7  10  0   4   9   4 14  1
D48V6, multiclass
D48V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TFEC MUTATED             0       0        0        1        2         1
  TFEC WILD-TYPE           4      16       10       12       16         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  TFEC MUTATED           1         0         2          0          3          4
  TFEC WILD-TYPE         8         7         6          6         15         17
                vv
clus             STAGE IV
  TFEC MUTATED          0
  TFEC WILD-TYPE        5
D48V8, multiclass

Clustering(49) Variable = TRAT1 MUTATION ANALYSIS
D49V1, survival
                 sevent
clus2              0  1
  TRAT1 MUTATED    2  6
  TRAT1 WILD-TYPE 34 43
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              8              77 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              6              43 
$`TRAT1 MUTATED`
TCGA-DA-A1IC TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A29M TCGA-ER-A19F TCGA-FW-A3R5 
        6.64         1.12        12.20        27.12        11.11         1.02 
TCGA-GN-A266 TCGA-GN-A26A 
       10.09        12.16 

$`TRAT1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
        4.93        22.36        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       11.57         6.31         1.35         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        8.81         7.96        37.97        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        1.08         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        2.43         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        8.94         3.52         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       78.44         6.58         8.81         0.20        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       31.33        84.72        16.21        15.39        14.70 

  TRAT1 MUTATED TRAT1 WILD-TYPE 
           1.02            0.20 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
          27.12           98.76 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
          10.60           13.32 
[1] "1.0 - 27.1 (10.6)" "0.2 - 98.8 (13.3)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-GN-A26D 
"TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-GN-A26D 
"TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-GN-A26D 
"TRAT1 WILD-TYPE" 
[1] "hr=" "2.3"
D49V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  TRAT1 MUTATED                    1             1
  TRAT1 WILD-TYPE                 22             0
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TRAT1 MUTATED                                                                                          3
  TRAT1 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  TRAT1 MUTATED                     6
  TRAT1 WILD-TYPE                  99
D49V3, multiclass
                                                                                          clus
vv                                                                                         TRAT1 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  6
                                                                                          clus
vv                                                                                         TRAT1 WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   99
D49V4, binary
                 cls
clus               0  1
  TRAT1 MUTATED    5  6
  TRAT1 WILD-TYPE 54 96
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRAT1 MUTATED      5    6
  TRAT1 WILD-TYPE   54   96
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  FEMALE             5              54
  MALE               6              96
                 vv
clus               M0  M1 M1A M1B M1C
  TRAT1 MUTATED    10   0   0   0   0
  TRAT1 WILD-TYPE 130   2   1   2   2
D49V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TRAT1 MUTATED    7  0   1   0  1   0   0   1  0  0
  TRAT1 WILD-TYPE 81  2   6  15  0   4  10   4 15  1
D49V6, multiclass
D49V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TRAT1 MUTATED             0       1        1        2        1         0
  TRAT1 WILD-TYPE           4      15        9       11       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TRAT1 MUTATED           1         0         1          1          1
  TRAT1 WILD-TYPE         8         7         7          5         17
                 vv
clus              STAGE IIIC STAGE IV
  TRAT1 MUTATED            0        0
  TRAT1 WILD-TYPE         21        5
D49V8, multiclass

Clustering(50) Variable = PRR23B MUTATION ANALYSIS
D50V1, survival
                  sevent
clus2               0  1
  PRR23B MUTATED    6  1
  PRR23B WILD-TYPE 30 48
  PRR23B MUTATED PRR23B WILD-TYPE 
               7               78 
  PRR23B MUTATED PRR23B WILD-TYPE 
               1               48 
$`PRR23B MUTATED`
TCGA-D3-A2JF TCGA-DA-A1HV TCGA-DA-A3F5 TCGA-EE-A29C TCGA-EE-A29M TCGA-FW-A3R5 
       30.87        48.79        17.56        37.97        27.12         1.02 
TCGA-GN-A266 
       10.09 

$`PRR23B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
        6.64        19.36         7.00        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        1.12         1.35        12.20         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        8.81         7.96        11.15        38.63         4.41         1.08 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V 
        9.47        12.03         8.12         8.84         9.99         2.43 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       78.44         6.58         8.81         0.20        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        16.21        15.39        12.16        14.70 

  PRR23B MUTATED PRR23B WILD-TYPE 
            1.02             0.20 
  PRR23B MUTATED PRR23B WILD-TYPE 
           48.79            98.76 
  PRR23B MUTATED PRR23B WILD-TYPE 
           27.12            11.80 
[1] "1.0 - 48.8 (27.1)" "0.2 - 98.8 (11.8)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-GN-A26D 
"PRR23B WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-GN-A26D 
"PRR23B WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-GN-A26D 
"PRR23B WILD-TYPE" 
[1] "hr=" "6"  
D50V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  PRR23B MUTATED                    2             1
  PRR23B WILD-TYPE                 21             0
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PRR23B MUTATED                                                                                          2
  PRR23B WILD-TYPE                                                                                       30
                  vv
clus               REGIONAL LYMPH NODE
  PRR23B MUTATED                     6
  PRR23B WILD-TYPE                  99
D50V3, multiclass
                                                                                          clus
vv                                                                                         PRR23B MUTATED
  DISTANT METASTASIS                                                                                    2
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              2
  REGIONAL LYMPH NODE                                                                                   6
                                                                                          clus
vv                                                                                         PRR23B WILD-TYPE
  DISTANT METASTASIS                                                                                     21
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               30
  REGIONAL LYMPH NODE                                                                                    99
D50V4, binary
                  cls
clus                0  1
  PRR23B MUTATED    4  7
  PRR23B WILD-TYPE 55 95
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PRR23B MUTATED      4    7
  PRR23B WILD-TYPE   55   95
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  FEMALE              4               55
  MALE                7               95
                  vv
clus                M0  M1 M1A M1B M1C
  PRR23B MUTATED    10   0   0   0   0
  PRR23B WILD-TYPE 130   2   1   2   2
D50V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PRR23B MUTATED    6  0   0   0  1   0   1   1  1  0
  PRR23B WILD-TYPE 82  2   7  15  0   4   9   4 14  1
D50V6, multiclass
D50V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PRR23B MUTATED             0       2        1        2        1         0
  PRR23B WILD-TYPE           4      14        9       11       17         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PRR23B MUTATED           0         0         1          0          2
  PRR23B WILD-TYPE         9         7         7          6         16
                  vv
clus               STAGE IIIC STAGE IV
  PRR23B MUTATED            1        0
  PRR23B WILD-TYPE         20        5
D50V8, multiclass

Clustering(51) Variable = C9ORF119 MUTATION ANALYSIS
D51V1, survival
                    sevent
clus2                 0  1
  C9ORF119 MUTATED    2  1
  C9ORF119 WILD-TYPE 34 48
  C9ORF119 MUTATED C9ORF119 WILD-TYPE 
                 3                 82 
  C9ORF119 MUTATED C9ORF119 WILD-TYPE 
                 1                 48 
$`C9ORF119 MUTATED`
TCGA-EE-A29D TCGA-EE-A2A2 TCGA-FW-A3R5 
       11.15        23.90         1.02 

$`C9ORF119 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       38.63         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       25.28         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  C9ORF119 MUTATED C9ORF119 WILD-TYPE 
              1.02               0.20 
  C9ORF119 MUTATED C9ORF119 WILD-TYPE 
             23.90              98.76 
  C9ORF119 MUTATED C9ORF119 WILD-TYPE 
             11.15              12.18 
[1] "1.0 - 23.9 (11.2)" "0.2 - 98.8 (12.2)"
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE"   "C9ORF119 MUTATED" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A26D 
"C9ORF119 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE"   "C9ORF119 MUTATED" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A26D 
"C9ORF119 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
  "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE"   "C9ORF119 MUTATED" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A26D 
"C9ORF119 WILD-TYPE" 
[1] "hr=" "1.2"
D51V2, continuous
                    vv
clus                 DISTANT METASTASIS PRIMARY TUMOR
  C9ORF119 MUTATED                    0             0
  C9ORF119 WILD-TYPE                 23             1
                    vv
clus                 REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  C9ORF119 MUTATED                                                                                          1
  C9ORF119 WILD-TYPE                                                                                       31
                    vv
clus                 REGIONAL LYMPH NODE
  C9ORF119 MUTATED                     4
  C9ORF119 WILD-TYPE                 101
D51V3, multiclass
                                                                                          clus
vv                                                                                         C9ORF119 MUTATED
  DISTANT METASTASIS                                                                                      0
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                1
  REGIONAL LYMPH NODE                                                                                     4
                                                                                          clus
vv                                                                                         C9ORF119 WILD-TYPE
  DISTANT METASTASIS                                                                                       23
  PRIMARY TUMOR                                                                                             1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 31
  REGIONAL LYMPH NODE                                                                                     101
D51V4, binary
                    cls
clus                  0  1
  C9ORF119 MUTATED    0  5
  C9ORF119 WILD-TYPE 59 97
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C9ORF119 MUTATED      0    5
  C9ORF119 WILD-TYPE   59   97
        clus
vv       C9ORF119 MUTATED C9ORF119 WILD-TYPE
  FEMALE                0                 59
  MALE                  5                 97
                    vv
clus                  M0  M1 M1A M1B M1C
  C9ORF119 MUTATED     5   0   0   0   0
  C9ORF119 WILD-TYPE 135   2   1   2   2
D51V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  C9ORF119 MUTATED    2  0   0   2  1   0   0   0  0  0
  C9ORF119 WILD-TYPE 86  2   7  13  0   4  10   5 15  1
D51V6, multiclass
D51V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  C9ORF119 MUTATED             0       1        0        0        0         1
  C9ORF119 WILD-TYPE           4      15       10       13       18         6
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  C9ORF119 MUTATED           0         0         1          0          1
  C9ORF119 WILD-TYPE         9         7         7          6         17
                    vv
clus                 STAGE IIIC STAGE IV
  C9ORF119 MUTATED            1        0
  C9ORF119 WILD-TYPE         20        5
D51V8, multiclass

Clustering(52) Variable = LIN7A MUTATION ANALYSIS
D52V1, survival
                 sevent
clus2              0  1
  LIN7A MUTATED    1  3
  LIN7A WILD-TYPE 35 46
  LIN7A MUTATED LIN7A WILD-TYPE 
              4              81 
  LIN7A MUTATED LIN7A WILD-TYPE 
              3              46 
$`LIN7A MUTATED`
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A29L TCGA-FW-A3R5 
        1.12        12.20         1.08         1.02 

$`LIN7A WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B 
       14.83        11.57         6.31         1.35         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        5.13         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        9.99         2.43         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       15.35        24.85        31.33        84.72        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  LIN7A MUTATED LIN7A WILD-TYPE 
           1.02            0.20 
  LIN7A MUTATED LIN7A WILD-TYPE 
          12.20           98.76 
  LIN7A MUTATED LIN7A WILD-TYPE 
           1.10           12.99 
[1] "1.0 - 12.2 (1.1)"  "0.2 - 98.8 (13.0)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A26D 
"LIN7A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A26D 
"LIN7A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A26D 
"LIN7A WILD-TYPE" 
[1] "hr=" "5.8"
D52V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  LIN7A MUTATED                    1             0
  LIN7A WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  LIN7A MUTATED                                                                                          0
  LIN7A WILD-TYPE                                                                                       32
                 vv
clus              REGIONAL LYMPH NODE
  LIN7A MUTATED                     8
  LIN7A WILD-TYPE                  97
D52V3, multiclass
                                                                                          clus
vv                                                                                         LIN7A MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                  8
                                                                                          clus
vv                                                                                         LIN7A WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                   97
D52V4, binary
                 cls
clus               0  1
  LIN7A MUTATED    2  7
  LIN7A WILD-TYPE 57 95
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LIN7A MUTATED      2    7
  LIN7A WILD-TYPE   57   95
        clus
vv       LIN7A MUTATED LIN7A WILD-TYPE
  FEMALE             2              57
  MALE               7              95
                 vv
clus               M0  M1 M1A M1B M1C
  LIN7A MUTATED     7   0   0   0   0
  LIN7A WILD-TYPE 133   2   1   2   2
D52V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  LIN7A MUTATED    5  0   0   0  1   0   0   0  1  0
  LIN7A WILD-TYPE 83  2   7  15  0   4  10   5 14  1
D52V6, multiclass
D52V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  LIN7A MUTATED             0       1        1        0        3         0
  LIN7A WILD-TYPE           4      15        9       13       15         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  LIN7A MUTATED           0         0         1          0          0
  LIN7A WILD-TYPE         9         7         7          6         18
                 vv
clus              STAGE IIIC STAGE IV
  LIN7A MUTATED            1        0
  LIN7A WILD-TYPE         20        5
D52V8, multiclass

Clustering(53) Variable = PARM1 MUTATION ANALYSIS
D53V1, survival
                 sevent
clus2              0  1
  PARM1 MUTATED    2  7
  PARM1 WILD-TYPE 34 42
  PARM1 MUTATED PARM1 WILD-TYPE 
              9              76 
  PARM1 MUTATED PARM1 WILD-TYPE 
              7              42 
$`PARM1 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A2J8 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A29D TCGA-EE-A29P 
       70.16         8.38         1.35         4.27        11.15        12.03 
TCGA-EE-A29V TCGA-FW-A3R5 TCGA-GN-A266 
        2.43         1.02        10.09 

$`PARM1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        98.76        28.08        22.55        10.26 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       21.14        11.41        30.87         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        6.31         1.12        12.20        36.07         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
        7.96        37.97        38.63         4.41         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 
        9.47         8.12         8.84         9.99         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        8.81         0.20        15.35        24.85        31.33        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  PARM1 MUTATED PARM1 WILD-TYPE 
           1.02            0.20 
  PARM1 MUTATED PARM1 WILD-TYPE 
          70.16           98.76 
  PARM1 MUTATED PARM1 WILD-TYPE 
           8.38           13.50 
[1] "1.0 - 70.2 (8.4)"  "0.2 - 98.8 (13.5)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "PARM1 MUTATED" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-GN-A26D 
"PARM1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "PARM1 MUTATED" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-GN-A26D 
"PARM1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "PARM1 MUTATED" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-GN-A26D 
"PARM1 WILD-TYPE" 
[1] "hr=" "2.6"
D53V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  PARM1 MUTATED                    4             0
  PARM1 WILD-TYPE                 19             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PARM1 MUTATED                                                                                          3
  PARM1 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  PARM1 MUTATED                     7
  PARM1 WILD-TYPE                  98
D53V3, multiclass
                                                                                          clus
vv                                                                                         PARM1 MUTATED
  DISTANT METASTASIS                                                                                   4
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  7
                                                                                          clus
vv                                                                                         PARM1 WILD-TYPE
  DISTANT METASTASIS                                                                                    19
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   98
D53V4, binary
                 cls
clus               0  1
  PARM1 MUTATED    4 10
  PARM1 WILD-TYPE 55 92
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARM1 MUTATED      4   10
  PARM1 WILD-TYPE   55   92
        clus
vv       PARM1 MUTATED PARM1 WILD-TYPE
  FEMALE             4              55
  MALE              10              92
                 vv
clus               M0  M1 M1A M1B M1C
  PARM1 MUTATED    13   0   0   0   0
  PARM1 WILD-TYPE 127   2   1   2   2
D53V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PARM1 MUTATED    5  0   0   4  1   0   0   2  1  0
  PARM1 WILD-TYPE 83  2   7  11  0   4  10   3 14  1
D53V6, multiclass
D53V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PARM1 MUTATED             1       0        1        1        1         0
  PARM1 WILD-TYPE           3      16        9       12       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PARM1 MUTATED           0         1         3          0          1
  PARM1 WILD-TYPE         9         6         5          6         17
                 vv
clus              STAGE IIIC STAGE IV
  PARM1 MUTATED            4        0
  PARM1 WILD-TYPE         17        5
D53V8, multiclass

Clustering(54) Variable = CCK MUTATION ANALYSIS
D54V1, survival
               sevent
clus2            0  1
  CCK MUTATED    3  0
  CCK WILD-TYPE 33 49
  CCK MUTATED CCK WILD-TYPE 
            3            82 
  CCK MUTATED CCK WILD-TYPE 
            0            49 
$`CCK MUTATED`
TCGA-EE-A29E TCGA-EE-A29R TCGA-GN-A265 
       38.63         8.84        84.72 

$`CCK WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       11.15         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.12         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A266 
        0.20         1.02        15.35        24.85        31.33        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  CCK MUTATED CCK WILD-TYPE 
         8.84          0.20 
  CCK MUTATED CCK WILD-TYPE 
        84.72         98.76 
  CCK MUTATED CCK WILD-TYPE 
       38.630        12.095 
[1] "8.8 - 84.7 (38.6)" "0.2 - 98.8 (12.1)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
[1] "hr="     "7.5e+07"
D54V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  CCK MUTATED                    1             0
  CCK WILD-TYPE                 22             1
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CCK MUTATED                                                                                          0
  CCK WILD-TYPE                                                                                       32
               vv
clus            REGIONAL LYMPH NODE
  CCK MUTATED                     4
  CCK WILD-TYPE                 101
D54V3, multiclass
                                                                                          clus
vv                                                                                         CCK MUTATED
  DISTANT METASTASIS                                                                                 1
  PRIMARY TUMOR                                                                                      0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           0
  REGIONAL LYMPH NODE                                                                                4
                                                                                          clus
vv                                                                                         CCK WILD-TYPE
  DISTANT METASTASIS                                                                                  22
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            32
  REGIONAL LYMPH NODE                                                                                101
D54V4, binary
               cls
clus             0  1
  CCK MUTATED    1  4
  CCK WILD-TYPE 58 98
[1] "tbl2"
               cls
clus            [,1] [,2]
  CCK MUTATED      1    4
  CCK WILD-TYPE   58   98
        clus
vv       CCK MUTATED CCK WILD-TYPE
  FEMALE           1            58
  MALE             4            98
               vv
clus             M0  M1 M1A M1B M1C
  CCK MUTATED     4   0   0   0   0
  CCK WILD-TYPE 136   2   1   2   2
D54V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CCK MUTATED    1  0   0   3  0   0   0   0  0  0
  CCK WILD-TYPE 87  2   7  12  1   4  10   5 15  1
D54V6, multiclass
D54V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CCK MUTATED             0       0        1        0        0         0
  CCK WILD-TYPE           4      16        9       13       18         7
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  CCK MUTATED           0         0         1          0          1          1
  CCK WILD-TYPE         9         7         7          6         17         20
               vv
clus            STAGE IV
  CCK MUTATED          0
  CCK WILD-TYPE        5
D54V8, multiclass

Clustering(55) Variable = TCEB3C MUTATION ANALYSIS
D55V1, survival
                  sevent
clus2               0  1
  TCEB3C MUTATED    5  8
  TCEB3C WILD-TYPE 31 41
  TCEB3C MUTATED TCEB3C WILD-TYPE 
              13               72 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
               8               41 
$`TCEB3C MUTATED`
TCGA-D3-A2JK TCGA-D3-A3MV TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1IC TCGA-EE-A181 
        6.35         5.39         9.99        36.69         6.64         1.12 
TCGA-EE-A182 TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29S TCGA-EE-A2A2 TCGA-ER-A19F 
        1.35        38.63         1.08         9.99        23.90        11.11 
TCGA-GN-A266 
       10.09 

$`TCEB3C WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41        30.87        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       45.70        13.32        24.00         9.30         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 
       44.52        25.15         4.93        22.36        19.36         7.00 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 
       17.56        14.83        11.57         6.31        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 
        2.43         8.09        11.31        25.28         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
        3.52         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 
        6.58         8.81         0.20         1.02        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        16.21        15.39        12.16        14.70 

  TCEB3C MUTATED TCEB3C WILD-TYPE 
            1.08             0.20 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
           38.63            98.76 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
            9.99            13.50 
[1] "1.1 - 38.6 (10.0)" "0.2 - 98.8 (13.5)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A26D 
"TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A26D 
"TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A26D 
"TCEB3C WILD-TYPE" 
[1] "hr=" "1.7"
D55V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  TCEB3C MUTATED                    4             0
  TCEB3C WILD-TYPE                 19             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TCEB3C MUTATED                                                                                          5
  TCEB3C WILD-TYPE                                                                                       27
                  vv
clus               REGIONAL LYMPH NODE
  TCEB3C MUTATED                    14
  TCEB3C WILD-TYPE                  91
D55V3, multiclass
                                                                                          clus
vv                                                                                         TCEB3C MUTATED
  DISTANT METASTASIS                                                                                    4
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              5
  REGIONAL LYMPH NODE                                                                                  14
                                                                                          clus
vv                                                                                         TCEB3C WILD-TYPE
  DISTANT METASTASIS                                                                                     19
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               27
  REGIONAL LYMPH NODE                                                                                    91
D55V4, binary
                  cls
clus                0  1
  TCEB3C MUTATED    5 18
  TCEB3C WILD-TYPE 54 84
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCEB3C MUTATED      5   18
  TCEB3C WILD-TYPE   54   84
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  FEMALE              5               54
  MALE               18               84
                  vv
clus                M0  M1 M1A M1B M1C
  TCEB3C MUTATED    22   0   0   0   0
  TCEB3C WILD-TYPE 118   2   1   2   2
D55V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TCEB3C MUTATED   11  0   1   3  0   2   3   1  1  0
  TCEB3C WILD-TYPE 77  2   6  12  1   2   7   4 14  1
D55V6, multiclass
D55V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TCEB3C MUTATED             0       1        0        2        4         1
  TCEB3C WILD-TYPE           4      15       10       11       14         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TCEB3C MUTATED           1         1         0          1          6
  TCEB3C WILD-TYPE         8         6         8          5         12
                  vv
clus               STAGE IIIC STAGE IV
  TCEB3C MUTATED            3        0
  TCEB3C WILD-TYPE         18        5
D55V8, multiclass

Clustering(56) Variable = DEFB118 MUTATION ANALYSIS
D56V1, survival
                   sevent
clus2                0  1
  DEFB118 MUTATED    4  1
  DEFB118 WILD-TYPE 32 48
  DEFB118 MUTATED DEFB118 WILD-TYPE 
                5                80 
  DEFB118 MUTATED DEFB118 WILD-TYPE 
                1                48 
$`DEFB118 MUTATED`
TCGA-DA-A1I1 TCGA-EE-A29R TCGA-EE-A2A6 TCGA-ER-A19F TCGA-FW-A3R5 
       39.19         8.84         8.94        11.11         1.02 

$`DEFB118 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       38.63         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.12         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
       23.90         9.67         3.52         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         0.20        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       24.85        31.33        84.72        10.09        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  DEFB118 MUTATED DEFB118 WILD-TYPE 
             1.02              0.20 
  DEFB118 MUTATED DEFB118 WILD-TYPE 
            39.19             98.76 
  DEFB118 MUTATED DEFB118 WILD-TYPE 
            8.940            12.595 
[1] "1.0 - 39.2 (8.9)"  "0.2 - 98.8 (12.6)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A26D 
"DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A26D 
"DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A26D 
"DEFB118 WILD-TYPE" 
[1] "hr=" "2.1"
D56V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  DEFB118 MUTATED                    0             0
  DEFB118 WILD-TYPE                 23             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEFB118 MUTATED                                                                                          1
  DEFB118 WILD-TYPE                                                                                       31
                   vv
clus                REGIONAL LYMPH NODE
  DEFB118 MUTATED                     6
  DEFB118 WILD-TYPE                  99
D56V3, multiclass
                                                                                          clus
vv                                                                                         DEFB118 MUTATED
  DISTANT METASTASIS                                                                                     0
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               1
  REGIONAL LYMPH NODE                                                                                    6
                                                                                          clus
vv                                                                                         DEFB118 WILD-TYPE
  DISTANT METASTASIS                                                                                      23
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                31
  REGIONAL LYMPH NODE                                                                                     99
D56V4, binary
                   cls
clus                 0  1
  DEFB118 MUTATED    2  5
  DEFB118 WILD-TYPE 57 97
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB118 MUTATED      2    5
  DEFB118 WILD-TYPE   57   97
        clus
vv       DEFB118 MUTATED DEFB118 WILD-TYPE
  FEMALE               2                57
  MALE                 5                97
                   vv
clus                 M0  M1 M1A M1B M1C
  DEFB118 MUTATED     7   0   0   0   0
  DEFB118 WILD-TYPE 133   2   1   2   2
D56V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEFB118 MUTATED    4  0   0   1  1   0   0   0  1  0
  DEFB118 WILD-TYPE 84  2   7  14  0   4  10   5 14  1
D56V6, multiclass
D56V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEFB118 MUTATED             0       1        1        0        0         0
  DEFB118 WILD-TYPE           4      15        9       13       18         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DEFB118 MUTATED           1         0         1          0          0
  DEFB118 WILD-TYPE         8         7         7          6         18
                   vv
clus                STAGE IIIC STAGE IV
  DEFB118 MUTATED            2        0
  DEFB118 WILD-TYPE         19        5
D56V8, multiclass

Clustering(57) Variable = VEGFC MUTATION ANALYSIS
D57V1, survival
                 sevent
clus2              0  1
  VEGFC MUTATED    5  2
  VEGFC WILD-TYPE 31 47
  VEGFC MUTATED VEGFC WILD-TYPE 
              7              78 
  VEGFC MUTATED VEGFC WILD-TYPE 
              2              47 
$`VEGFC MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A2JK TCGA-D3-A3MV TCGA-DA-A1HW TCGA-EE-A20F TCGA-EE-A2A6 
       98.76         6.35         5.39        35.80         5.13         8.94 
TCGA-FW-A3R5 
        1.02 

$`VEGFC WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        70.16        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-D3-A3CC 
        8.38        21.14        11.41        30.87        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       13.32        24.00         9.30         4.01         2.86        48.79 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
       51.12        10.03        39.19        13.68         9.99        44.52 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       36.69        25.15         4.93        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
        7.00        17.56        14.83        11.57         6.31         1.12 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A 
        1.35        12.20         4.27        36.07         8.81         7.96 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       37.97        11.15        38.63         4.41         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V 
        9.47        12.03         8.12         8.84         9.99         2.43 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-ER-A19D 
        8.09        11.31        25.28        23.90         9.67         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        6.58         8.81         0.20        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        16.21        15.39        12.16        14.70 

  VEGFC MUTATED VEGFC WILD-TYPE 
           1.02            0.20 
  VEGFC MUTATED VEGFC WILD-TYPE 
          98.76           84.72 
  VEGFC MUTATED VEGFC WILD-TYPE 
          6.350          12.595 
[1] "1.0 - 98.8 (6.3)"  "0.2 - 84.7 (12.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A26D 
"VEGFC WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A26D 
"VEGFC WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A26D 
"VEGFC WILD-TYPE" 
[1] "hr=" "1.7"
D57V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  VEGFC MUTATED                    3             0
  VEGFC WILD-TYPE                 20             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  VEGFC MUTATED                                                                                          1
  VEGFC WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  VEGFC MUTATED                    12
  VEGFC WILD-TYPE                  93
D57V3, multiclass
                                                                                          clus
vv                                                                                         VEGFC MUTATED
  DISTANT METASTASIS                                                                                   3
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                 12
                                                                                          clus
vv                                                                                         VEGFC WILD-TYPE
  DISTANT METASTASIS                                                                                    20
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   93
D57V4, binary
                 cls
clus               0  1
  VEGFC MUTATED    7  9
  VEGFC WILD-TYPE 52 93
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VEGFC MUTATED      7    9
  VEGFC WILD-TYPE   52   93
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  FEMALE             7              52
  MALE               9              93
                 vv
clus               M0  M1 M1A M1B M1C
  VEGFC MUTATED    14   0   0   0   0
  VEGFC WILD-TYPE 126   2   1   2   2
D57V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  VEGFC MUTATED    8  0   0   1  1   2   1   1  0  0
  VEGFC WILD-TYPE 80  2   7  14  0   2   9   4 15  1
D57V6, multiclass
D57V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  VEGFC MUTATED             0       0        3        1        2         0
  VEGFC WILD-TYPE           4      16        7       12       16         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  VEGFC MUTATED           2         0         1          0          3
  VEGFC WILD-TYPE         7         7         7          6         15
                 vv
clus              STAGE IIIC STAGE IV
  VEGFC MUTATED            1        0
  VEGFC WILD-TYPE         20        5
D57V8, multiclass

Clustering(58) Variable = MARCH11 MUTATION ANALYSIS
D58V1, survival
                   sevent
clus2                0  1
  MARCH11 MUTATED    2  0
  MARCH11 WILD-TYPE 34 49
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                2                83 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                0                49 
$`MARCH11 MUTATED`
TCGA-DA-A1I5 TCGA-FW-A3R5 
       44.52         1.02 

$`MARCH11 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       39.19        13.68         9.99        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       38.63         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        8.81         0.20        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  MARCH11 MUTATED MARCH11 WILD-TYPE 
             1.02              0.20 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
            44.52             98.76 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
            22.77             12.16 
[1] "1.0 - 44.5 (22.8)" "0.2 - 98.8 (12.2)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-GN-A26D 
"MARCH11 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-GN-A26D 
"MARCH11 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-GN-A26D 
"MARCH11 WILD-TYPE" 
[1] "Remove cluster labels:" "MARCH11 MUTATED"       
clus
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                2                83 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I7 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19L 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1        TCGA-ER-A3ET 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-GN-A264        TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
D58V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  MARCH11 MUTATED                    3             0
  MARCH11 WILD-TYPE                 20             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  MARCH11 MUTATED                                                                                          1
  MARCH11 WILD-TYPE                                                                                       31
                   vv
clus                REGIONAL LYMPH NODE
  MARCH11 MUTATED                     4
  MARCH11 WILD-TYPE                 101
D58V3, multiclass
                                                                                          clus
vv                                                                                         MARCH11 MUTATED
  DISTANT METASTASIS                                                                                     3
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               1
  REGIONAL LYMPH NODE                                                                                    4
                                                                                          clus
vv                                                                                         MARCH11 WILD-TYPE
  DISTANT METASTASIS                                                                                      20
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                31
  REGIONAL LYMPH NODE                                                                                    101
D58V4, binary
                   cls
clus                 0  1
  MARCH11 MUTATED    2  6
  MARCH11 WILD-TYPE 57 96
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MARCH11 MUTATED      2    6
  MARCH11 WILD-TYPE   57   96
        clus
vv       MARCH11 MUTATED MARCH11 WILD-TYPE
  FEMALE               2                57
  MALE                 6                96
                   vv
clus                 M0  M1 M1A M1B M1C
  MARCH11 MUTATED     7   0   0   0   1
  MARCH11 WILD-TYPE 133   2   1   2   1
D58V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  MARCH11 MUTATED    6  0   0   1  1   0   0   0  0  0
  MARCH11 WILD-TYPE 82  2   7  14  0   4  10   5 15  1
D58V6, multiclass
D58V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  MARCH11 MUTATED             0       1        0        1        2         0
  MARCH11 WILD-TYPE           4      15       10       12       16         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  MARCH11 MUTATED           0         1         2          0          0
  MARCH11 WILD-TYPE         9         6         6          6         18
                   vv
clus                STAGE IIIC STAGE IV
  MARCH11 MUTATED            0        1
  MARCH11 WILD-TYPE         21        4
D58V8, multiclass

Clustering(59) Variable = ZFP106 MUTATION ANALYSIS
D59V1, survival
                  sevent
clus2               0  1
  ZFP106 MUTATED    1  1
  ZFP106 WILD-TYPE 35 48
  ZFP106 MUTATED ZFP106 WILD-TYPE 
               2               83 
  ZFP106 MUTATED ZFP106 WILD-TYPE 
               1               48 
$`ZFP106 MUTATED`
TCGA-D3-A2JF TCGA-EE-A29L 
       30.87         1.08 

$`ZFP106 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       38.63         4.41        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        0.20         1.02        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  ZFP106 MUTATED ZFP106 WILD-TYPE 
            1.08             0.20 
  ZFP106 MUTATED ZFP106 WILD-TYPE 
           30.87            98.76 
  ZFP106 MUTATED ZFP106 WILD-TYPE 
          15.975           12.160 
[1] "1.1 - 30.9 (16.0)" "0.2 - 98.8 (12.2)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A26D 
"ZFP106 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A26D 
"ZFP106 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A26D 
"ZFP106 WILD-TYPE" 
[1] "Remove cluster labels:" "ZFP106 MUTATED"        
clus
  ZFP106 MUTATED ZFP106 WILD-TYPE 
               2               83 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29M       TCGA-EE-A29N 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0       TCGA-EE-A2A1 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6       TCGA-ER-A19D 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-ER-A19F       TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19M 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-ER-A19N       TCGA-ER-A1A1       TCGA-ER-A3ET       TCGA-FS-A1ZR 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-FW-A3R5       TCGA-GN-A261       TCGA-GN-A262 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
D59V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  ZFP106 MUTATED                    1             0
  ZFP106 WILD-TYPE                 22             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ZFP106 MUTATED                                                                                          2
  ZFP106 WILD-TYPE                                                                                       30
                  vv
clus               REGIONAL LYMPH NODE
  ZFP106 MUTATED                     3
  ZFP106 WILD-TYPE                 102
D59V3, multiclass
                                                                                          clus
vv                                                                                         ZFP106 MUTATED
  DISTANT METASTASIS                                                                                    1
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              2
  REGIONAL LYMPH NODE                                                                                   3
                                                                                          clus
vv                                                                                         ZFP106 WILD-TYPE
  DISTANT METASTASIS                                                                                     22
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               30
  REGIONAL LYMPH NODE                                                                                   102
D59V4, binary
                  cls
clus                0  1
  ZFP106 MUTATED    0  6
  ZFP106 WILD-TYPE 59 96
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZFP106 MUTATED      0    6
  ZFP106 WILD-TYPE   59   96
        clus
vv       ZFP106 MUTATED ZFP106 WILD-TYPE
  FEMALE              0               59
  MALE                6               96
                  vv
clus                M0  M1 M1A M1B M1C
  ZFP106 MUTATED     6   0   0   0   0
  ZFP106 WILD-TYPE 134   2   1   2   2
D59V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  ZFP106 MUTATED    4  0   0   0  0   0   0   1  1  0
  ZFP106 WILD-TYPE 84  2   7  15  1   4  10   4 14  1
D59V6, multiclass
D59V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ZFP106 MUTATED             0       0        1        0        3         0
  ZFP106 WILD-TYPE           4      16        9       13       15         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ZFP106 MUTATED           0         0         1          0          0
  ZFP106 WILD-TYPE         9         7         7          6         18
                  vv
clus               STAGE IIIC STAGE IV
  ZFP106 MUTATED            1        0
  ZFP106 WILD-TYPE         20        5
D59V8, multiclass

Clustering(60) Variable = PDE1A MUTATION ANALYSIS
D60V1, survival
                 sevent
clus2              0  1
  PDE1A MUTATED    7  7
  PDE1A WILD-TYPE 29 42
  PDE1A MUTATED PDE1A WILD-TYPE 
             14              71 
  PDE1A MUTATED PDE1A WILD-TYPE 
              7              42 
$`PDE1A MUTATED`
TCGA-D3-A2JF TCGA-D9-A3Z1 TCGA-DA-A1IC TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A20H 
       30.87         4.01         6.64         1.12         1.35         8.81 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2A2 
       11.15        38.63        27.12         9.99        11.31        23.90 
TCGA-ER-A19F TCGA-FW-A3R5 
       11.11         1.02 

$`PDE1A WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z3 
       45.70        13.32        24.00         9.30         5.39         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C 
       12.20         4.27        36.07         5.13         7.96        37.97 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41         1.08         9.47        12.03         8.12         8.84 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
        2.43         8.09        25.28         9.67         8.94         3.52 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        8.81         0.20        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  PDE1A MUTATED PDE1A WILD-TYPE 
           1.02            0.20 
  PDE1A MUTATED PDE1A WILD-TYPE 
          38.63           98.76 
  PDE1A MUTATED PDE1A WILD-TYPE 
          10.55           13.32 
[1] "1.0 - 38.6 (10.6)" "0.2 - 98.8 (13.3)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "PDE1A MUTATED"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
  "PDE1A MUTATED" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-GN-A26D 
"PDE1A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "PDE1A MUTATED"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
  "PDE1A MUTATED" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-GN-A26D 
"PDE1A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "PDE1A MUTATED"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
  "PDE1A MUTATED" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-GN-A26D 
"PDE1A WILD-TYPE" 
[1] "hr=" "1.2"
D60V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  PDE1A MUTATED                    5             1
  PDE1A WILD-TYPE                 18             0
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PDE1A MUTATED                                                                                          1
  PDE1A WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  PDE1A MUTATED                    19
  PDE1A WILD-TYPE                  86
D60V3, multiclass
                                                                                          clus
vv                                                                                         PDE1A MUTATED
  DISTANT METASTASIS                                                                                   5
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                 19
                                                                                          clus
vv                                                                                         PDE1A WILD-TYPE
  DISTANT METASTASIS                                                                                    18
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   86
D60V4, binary
                 cls
clus               0  1
  PDE1A MUTATED    8 18
  PDE1A WILD-TYPE 51 84
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDE1A MUTATED      8   18
  PDE1A WILD-TYPE   51   84
        clus
vv       PDE1A MUTATED PDE1A WILD-TYPE
  FEMALE             8              51
  MALE              18              84
                 vv
clus               M0  M1 M1A M1B M1C
  PDE1A MUTATED    24   0   0   0   0
  PDE1A WILD-TYPE 116   2   1   2   2
D60V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PDE1A MUTATED   16  1   0   4  1   0   0   1  1  0
  PDE1A WILD-TYPE 72  1   7  11  0   4  10   4 14  1
D60V6, multiclass
D60V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PDE1A MUTATED             1       5        1        3        2         2
  PDE1A WILD-TYPE           3      11        9       10       16         5
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PDE1A MUTATED           1         0         2          0          3
  PDE1A WILD-TYPE         8         7         6          6         15
                 vv
clus              STAGE IIIC STAGE IV
  PDE1A MUTATED            3        0
  PDE1A WILD-TYPE         18        5
D60V8, multiclass

Clustering(61) Variable = OR4F6 MUTATION ANALYSIS
D61V1, survival
                 sevent
clus2              0  1
  OR4F6 MUTATED    1  5
  OR4F6 WILD-TYPE 35 44
  OR4F6 MUTATED OR4F6 WILD-TYPE 
              6              79 
  OR4F6 MUTATED OR4F6 WILD-TYPE 
              5              44 
$`OR4F6 MUTATED`
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A29D TCGA-ER-A19J TCGA-FW-A3R5 TCGA-GN-A266 
        1.12        12.20        11.15         4.18         1.02        10.09 

$`OR4F6 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B 
       14.83        11.57         6.31         1.35         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
        5.13         8.81         7.96        37.97        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        1.08        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        9.99         2.43         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M 
        9.67         8.94         3.52        11.11        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         0.20        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       24.85        31.33        84.72        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  OR4F6 MUTATED OR4F6 WILD-TYPE 
           1.02            0.20 
  OR4F6 MUTATED OR4F6 WILD-TYPE 
          12.20           98.76 
  OR4F6 MUTATED OR4F6 WILD-TYPE 
          7.135          13.320 
[1] "1.0 - 12.2 (7.1)"  "0.2 - 98.8 (13.3)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE"   "OR4F6 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR4F6 WILD-TYPE"   "OR4F6 MUTATED" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "OR4F6 MUTATED" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE"   "OR4F6 MUTATED" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE"   "OR4F6 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "OR4F6 MUTATED" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-GN-A26D 
"OR4F6 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE"   "OR4F6 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR4F6 WILD-TYPE"   "OR4F6 MUTATED" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "OR4F6 MUTATED" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE"   "OR4F6 MUTATED" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE"   "OR4F6 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "OR4F6 MUTATED" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-GN-A26D 
"OR4F6 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE"   "OR4F6 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR4F6 WILD-TYPE"   "OR4F6 MUTATED" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "OR4F6 MUTATED" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE"   "OR4F6 MUTATED" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE"   "OR4F6 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "OR4F6 MUTATED" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" "OR4F6 WILD-TYPE" 
     TCGA-GN-A26D 
"OR4F6 WILD-TYPE" 
[1] "hr=" "4.1"
D61V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OR4F6 MUTATED                    1             0
  OR4F6 WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR4F6 MUTATED                                                                                          2
  OR4F6 WILD-TYPE                                                                                       30
                 vv
clus              REGIONAL LYMPH NODE
  OR4F6 MUTATED                     9
  OR4F6 WILD-TYPE                  96
D61V3, multiclass
                                                                                          clus
vv                                                                                         OR4F6 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  9
                                                                                          clus
vv                                                                                         OR4F6 WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   96
D61V4, binary
                 cls
clus               0  1
  OR4F6 MUTATED    3  9
  OR4F6 WILD-TYPE 56 93
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4F6 MUTATED      3    9
  OR4F6 WILD-TYPE   56   93
        clus
vv       OR4F6 MUTATED OR4F6 WILD-TYPE
  FEMALE             3              56
  MALE               9              93
                 vv
clus               M0  M1 M1A M1B M1C
  OR4F6 MUTATED    10   1   0   0   0
  OR4F6 WILD-TYPE 130   1   1   2   2
D61V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OR4F6 MUTATED    8  0   0   1  1   0   0   0  1  0
  OR4F6 WILD-TYPE 80  2   7  14  0   4  10   5 14  1
D61V6, multiclass
D61V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR4F6 MUTATED             1       2        0        1        3         0
  OR4F6 WILD-TYPE           3      14       10       12       15         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR4F6 MUTATED           0         1         1          0          0
  OR4F6 WILD-TYPE         9         6         7          6         18
                 vv
clus              STAGE IIIC STAGE IV
  OR4F6 MUTATED            1        1
  OR4F6 WILD-TYPE         20        4
D61V8, multiclass

Clustering(62) Variable = CD2 MUTATION ANALYSIS
D62V1, survival
               sevent
clus2            0  1
  CD2 MUTATED    4  4
  CD2 WILD-TYPE 32 45
  CD2 MUTATED CD2 WILD-TYPE 
            8            77 
  CD2 MUTATED CD2 WILD-TYPE 
            4            45 
$`CD2 MUTATED`
TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29P TCGA-ER-A19J 
        1.12        11.15        38.63        27.12        12.03         4.18 
TCGA-FW-A3R5 TCGA-GN-A266 
        1.02        10.09 

$`CD2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       14.83        11.57         6.31         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H 
       36.07         5.13         8.81         7.96        37.97         4.41 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V 
        1.08         9.47         8.12         8.84         9.99         2.43 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
        3.52        11.11        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        6.58         8.81         0.20        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        16.21        15.39        12.16        14.70 

  CD2 MUTATED CD2 WILD-TYPE 
         1.02          0.20 
  CD2 MUTATED CD2 WILD-TYPE 
        38.63         98.76 
  CD2 MUTATED CD2 WILD-TYPE 
        10.62         12.99 
[1] "1.0 - 38.6 (10.6)" "0.2 - 98.8 (13.0)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED"   "CD2 MUTATED" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE"   "CD2 MUTATED" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED"   "CD2 MUTATED" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE"   "CD2 MUTATED" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED"   "CD2 MUTATED" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE"   "CD2 MUTATED" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
[1] "hr=" "1.2"
D62V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  CD2 MUTATED                    0             1
  CD2 WILD-TYPE                 23             0
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CD2 MUTATED                                                                                          4
  CD2 WILD-TYPE                                                                                       28
               vv
clus            REGIONAL LYMPH NODE
  CD2 MUTATED                    10
  CD2 WILD-TYPE                  95
D62V3, multiclass
                                                                                          clus
vv                                                                                         CD2 MUTATED
  DISTANT METASTASIS                                                                                 0
  PRIMARY TUMOR                                                                                      1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           4
  REGIONAL LYMPH NODE                                                                               10
                                                                                          clus
vv                                                                                         CD2 WILD-TYPE
  DISTANT METASTASIS                                                                                  23
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            28
  REGIONAL LYMPH NODE                                                                                 95
D62V4, binary
               cls
clus             0  1
  CD2 MUTATED    6  9
  CD2 WILD-TYPE 53 93
[1] "tbl2"
               cls
clus            [,1] [,2]
  CD2 MUTATED      6    9
  CD2 WILD-TYPE   53   93
        clus
vv       CD2 MUTATED CD2 WILD-TYPE
  FEMALE           6            53
  MALE             9            93
               vv
clus             M0  M1 M1A M1B M1C
  CD2 MUTATED    12   1   0   1   0
  CD2 WILD-TYPE 128   1   1   1   2
D62V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CD2 MUTATED    8  0   1   2  1   0   0   0  2  0
  CD2 WILD-TYPE 80  2   6  13  0   4  10   5 13  1
D62V6, multiclass
D62V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CD2 MUTATED             0       1        0        1        4         0
  CD2 WILD-TYPE           4      15       10       12       14         7
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  CD2 MUTATED           0         2         1          0          2          1
  CD2 WILD-TYPE         9         5         7          6         16         20
               vv
clus            STAGE IV
  CD2 MUTATED          1
  CD2 WILD-TYPE        4
D62V8, multiclass

Clustering(63) Variable = EIF3D MUTATION ANALYSIS
D63V1, survival
                 sevent
clus2              0  1
  EIF3D MUTATED    0  2
  EIF3D WILD-TYPE 36 47
  EIF3D MUTATED EIF3D WILD-TYPE 
              2              83 
  EIF3D MUTATED EIF3D WILD-TYPE 
              2              47 
$`EIF3D MUTATED`
TCGA-EE-A29L TCGA-EE-A2A5 
        1.08         9.67 

$`EIF3D WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       11.15        38.63         4.41        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       25.28        23.90         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        0.20         1.02        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  EIF3D MUTATED EIF3D WILD-TYPE 
           1.08            0.20 
  EIF3D MUTATED EIF3D WILD-TYPE 
           9.67           98.76 
  EIF3D MUTATED EIF3D WILD-TYPE 
          5.375          12.200 
[1] "1.1 - 9.7 (5.4)"   "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE"   "EIF3D MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE"   "EIF3D MUTATED" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A26D 
"EIF3D WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE"   "EIF3D MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE"   "EIF3D MUTATED" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A26D 
"EIF3D WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE"   "EIF3D MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE"   "EIF3D MUTATED" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A26D 
"EIF3D WILD-TYPE" 
[1] "Remove cluster labels:" "EIF3D MUTATED"         
clus
  EIF3D MUTATED EIF3D WILD-TYPE 
              2              83 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29M 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A6      TCGA-ER-A19D 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-ER-A19F      TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19M 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-ER-A19N      TCGA-ER-A1A1      TCGA-ER-A3ET      TCGA-FS-A1ZR 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-FW-A3R5      TCGA-GN-A261      TCGA-GN-A262 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
D63V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  EIF3D MUTATED                    0             0
  EIF3D WILD-TYPE                 23             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  EIF3D MUTATED                                                                                          1
  EIF3D WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  EIF3D MUTATED                     2
  EIF3D WILD-TYPE                 103
D63V3, multiclass
                                                                                          clus
vv                                                                                         EIF3D MUTATED
  DISTANT METASTASIS                                                                                   0
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  2
                                                                                          clus
vv                                                                                         EIF3D WILD-TYPE
  DISTANT METASTASIS                                                                                    23
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                  103
D63V4, binary
                 cls
clus               0  1
  EIF3D MUTATED    0  3
  EIF3D WILD-TYPE 59 99
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EIF3D MUTATED      0    3
  EIF3D WILD-TYPE   59   99
        clus
vv       EIF3D MUTATED EIF3D WILD-TYPE
  FEMALE             0              59
  MALE               3              99
                 vv
clus               M0  M1 M1A M1B M1C
  EIF3D MUTATED     3   0   0   0   0
  EIF3D WILD-TYPE 137   2   1   2   2
D63V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  EIF3D MUTATED    2  0   0   0  0   0   0   0  1  0
  EIF3D WILD-TYPE 86  2   7  15  1   4  10   5 14  1
D63V6, multiclass
D63V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  EIF3D MUTATED             0       0        0        1        0         1
  EIF3D WILD-TYPE           4      16       10       12       18         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  EIF3D MUTATED           0         0         0          0          0
  EIF3D WILD-TYPE         9         7         8          6         18
                 vv
clus              STAGE IIIC STAGE IV
  EIF3D MUTATED            1        0
  EIF3D WILD-TYPE         20        5
D63V8, multiclass

Clustering(64) Variable = MKX MUTATION ANALYSIS
D64V1, survival
               sevent
clus2            0  1
  MKX MUTATED    5  2
  MKX WILD-TYPE 31 47
  MKX MUTATED MKX WILD-TYPE 
            7            78 
  MKX MUTATED MKX WILD-TYPE 
            2            47 
$`MKX MUTATED`
TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29Q TCGA-ER-A19F TCGA-FW-A3R5 TCGA-GN-A265 
       38.63        27.12         8.12        11.11         1.02        84.72 
TCGA-GN-A268 
       15.39 

$`MKX WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R 
       11.15         4.41         1.08         9.47        12.03         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        9.99         2.43         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        9.67         8.94         3.52         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         0.20        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       24.85        31.33        10.09        16.21        12.16        14.70 

  MKX MUTATED MKX WILD-TYPE 
         1.02          0.20 
  MKX MUTATED MKX WILD-TYPE 
        84.72         98.76 
  MKX MUTATED MKX WILD-TYPE 
       15.390        12.095 
[1] "1.0 - 84.7 (15.4)" "0.2 - 98.8 (12.1)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
  "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
  "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
  "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
[1] "hr=" "2.6"
D64V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  MKX MUTATED                    0             1
  MKX WILD-TYPE                 23             0
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  MKX MUTATED                                                                                          2
  MKX WILD-TYPE                                                                                       30
               vv
clus            REGIONAL LYMPH NODE
  MKX MUTATED                     8
  MKX WILD-TYPE                  97
D64V3, multiclass
                                                                                          clus
vv                                                                                         MKX MUTATED
  DISTANT METASTASIS                                                                                 0
  PRIMARY TUMOR                                                                                      1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           2
  REGIONAL LYMPH NODE                                                                                8
                                                                                          clus
vv                                                                                         MKX WILD-TYPE
  DISTANT METASTASIS                                                                                  23
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            30
  REGIONAL LYMPH NODE                                                                                 97
D64V4, binary
               cls
clus             0  1
  MKX MUTATED    3  8
  MKX WILD-TYPE 56 94
[1] "tbl2"
               cls
clus            [,1] [,2]
  MKX MUTATED      3    8
  MKX WILD-TYPE   56   94
        clus
vv       MKX MUTATED MKX WILD-TYPE
  FEMALE           3            56
  MALE             8            94
               vv
clus             M0  M1 M1A M1B M1C
  MKX MUTATED     8   0   0   0   0
  MKX WILD-TYPE 132   2   1   2   2
D64V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  MKX MUTATED    6  0   0   1  1   0   0   0  0  0
  MKX WILD-TYPE 82  2   7  14  0   4  10   5 15  1
D64V6, multiclass
D64V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  MKX MUTATED             0       0        1        1        0         0
  MKX WILD-TYPE           4      16        9       12       18         7
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  MKX MUTATED           3         0         1          0          1          0
  MKX WILD-TYPE         6         7         7          6         17         21
               vv
clus            STAGE IV
  MKX MUTATED          0
  MKX WILD-TYPE        5
D64V8, multiclass

Clustering(65) Variable = ARL16 MUTATION ANALYSIS
D65V1, survival
                 sevent
clus2              0  1
  ARL16 MUTATED    1  1
  ARL16 WILD-TYPE 35 48
  ARL16 MUTATED ARL16 WILD-TYPE 
              2              83 
  ARL16 MUTATED ARL16 WILD-TYPE 
              1              48 
$`ARL16 MUTATED`
TCGA-D3-A2JF TCGA-EE-A29A 
       30.87         7.96 

$`ARL16 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       36.07         5.13         8.81        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        0.20         1.02        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  ARL16 MUTATED ARL16 WILD-TYPE 
           7.96            0.20 
  ARL16 MUTATED ARL16 WILD-TYPE 
          30.87           98.76 
  ARL16 MUTATED ARL16 WILD-TYPE 
         19.415          12.160 
[1] "8.0 - 30.9 (19.4)" "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" "ARL16 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" "ARL16 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A26D 
"ARL16 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" "ARL16 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" "ARL16 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A26D 
"ARL16 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" "ARL16 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" "ARL16 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A26D 
"ARL16 WILD-TYPE" 
[1] "Remove cluster labels:" "ARL16 MUTATED"         
clus
  ARL16 MUTATED ARL16 WILD-TYPE 
              2              83 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A20H      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0      TCGA-EE-A2A1 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6      TCGA-ER-A19D 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-ER-A19F      TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19M 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-ER-A19N      TCGA-ER-A1A1      TCGA-ER-A3ET      TCGA-FS-A1ZR 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-FW-A3R5      TCGA-GN-A261      TCGA-GN-A262 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
D65V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  ARL16 MUTATED                    3             0
  ARL16 WILD-TYPE                 20             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ARL16 MUTATED                                                                                          0
  ARL16 WILD-TYPE                                                                                       32
                 vv
clus              REGIONAL LYMPH NODE
  ARL16 MUTATED                     2
  ARL16 WILD-TYPE                 103
D65V3, multiclass
                                                                                          clus
vv                                                                                         ARL16 MUTATED
  DISTANT METASTASIS                                                                                   3
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                  2
                                                                                          clus
vv                                                                                         ARL16 WILD-TYPE
  DISTANT METASTASIS                                                                                    20
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                  103
D65V4, binary
                 cls
clus               0  1
  ARL16 MUTATED    1  4
  ARL16 WILD-TYPE 58 98
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARL16 MUTATED      1    4
  ARL16 WILD-TYPE   58   98
        clus
vv       ARL16 MUTATED ARL16 WILD-TYPE
  FEMALE             1              58
  MALE               4              98
                 vv
clus               M0  M1 M1A M1B M1C
  ARL16 MUTATED     5   0   0   0   0
  ARL16 WILD-TYPE 135   2   1   2   2
D65V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  ARL16 MUTATED    3  0   1   1  0   0   0   0  0  0
  ARL16 WILD-TYPE 85  2   6  14  1   4  10   5 15  1
D65V6, multiclass
D65V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ARL16 MUTATED             0       0        2        0        1         0
  ARL16 WILD-TYPE           4      16        8       13       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ARL16 MUTATED           0         0         1          1          0
  ARL16 WILD-TYPE         9         7         7          5         18
                 vv
clus              STAGE IIIC STAGE IV
  ARL16 MUTATED            0        0
  ARL16 WILD-TYPE         21        5
D65V8, multiclass

Clustering(66) Variable = OR2L3 MUTATION ANALYSIS
D66V1, survival
                 sevent
clus2              0  1
  OR2L3 MUTATED    1  2
  OR2L3 WILD-TYPE 35 47
  OR2L3 MUTATED OR2L3 WILD-TYPE 
              3              82 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
              2              47 
$`OR2L3 MUTATED`
TCGA-D3-A3C6 TCGA-DA-A1I0 TCGA-FW-A3R5 
       15.25        10.03         1.02 

$`OR2L3 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        48.79        35.80        51.12        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        6.31         1.12         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        5.13         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  OR2L3 MUTATED OR2L3 WILD-TYPE 
           1.02            0.20 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
          15.25           98.76 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
          10.03           12.18 
[1] "1.0 - 15.2 (10.0)" "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-GN-A26D 
"OR2L3 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-GN-A26D 
"OR2L3 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-GN-A26D 
"OR2L3 WILD-TYPE" 
[1] "hr=" "2.1"
D66V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OR2L3 MUTATED                    4             0
  OR2L3 WILD-TYPE                 19             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR2L3 MUTATED                                                                                          3
  OR2L3 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  OR2L3 MUTATED                     6
  OR2L3 WILD-TYPE                  99
D66V3, multiclass
                                                                                          clus
vv                                                                                         OR2L3 MUTATED
  DISTANT METASTASIS                                                                                   4
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  6
                                                                                          clus
vv                                                                                         OR2L3 WILD-TYPE
  DISTANT METASTASIS                                                                                    19
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   99
D66V4, binary
                 cls
clus               0  1
  OR2L3 MUTATED    5  8
  OR2L3 WILD-TYPE 54 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L3 MUTATED      5    8
  OR2L3 WILD-TYPE   54   94
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  FEMALE             5              54
  MALE               8              94
                 vv
clus               M0  M1 M1A M1B M1C
  OR2L3 MUTATED    11   0   1   0   0
  OR2L3 WILD-TYPE 129   2   0   2   2
D66V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OR2L3 MUTATED   10  0   0   0  1   0   0   0  1  0
  OR2L3 WILD-TYPE 78  2   7  15  0   4  10   5 14  1
D66V6, multiclass
D66V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR2L3 MUTATED             2       3        0        1        1         0
  OR2L3 WILD-TYPE           2      13       10       12       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR2L3 MUTATED           1         2         1          0          0
  OR2L3 WILD-TYPE         8         5         7          6         18
                 vv
clus              STAGE IIIC STAGE IV
  OR2L3 MUTATED            1        0
  OR2L3 WILD-TYPE         20        5
D66V8, multiclass

Clustering(67) Variable = DEFB119 MUTATION ANALYSIS
D67V1, survival
                   sevent
clus2                0  1
  DEFB119 MUTATED    1  2
  DEFB119 WILD-TYPE 35 47
  DEFB119 MUTATED DEFB119 WILD-TYPE 
                3                82 
  DEFB119 MUTATED DEFB119 WILD-TYPE 
                2                47 
$`DEFB119 MUTATED`
TCGA-DA-A1I7 TCGA-EE-A183 TCGA-ER-A19D 
       36.69        12.20         3.52 

$`DEFB119 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA 
       39.19        13.68         9.99        44.52        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.12         1.35         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        5.13         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.90         9.67         8.94        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        1.02        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  DEFB119 MUTATED DEFB119 WILD-TYPE 
             3.52              0.20 
  DEFB119 MUTATED DEFB119 WILD-TYPE 
            36.69             98.76 
  DEFB119 MUTATED DEFB119 WILD-TYPE 
           12.200            12.095 
[1] "3.5 - 36.7 (12.2)" "0.2 - 98.8 (12.1)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
  "DEFB119 MUTATED" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A26D 
"DEFB119 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
  "DEFB119 MUTATED" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A26D 
"DEFB119 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
  "DEFB119 MUTATED" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A26D 
"DEFB119 WILD-TYPE" 
[1] "hr=" "1.1"
D67V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  DEFB119 MUTATED                    2             0
  DEFB119 WILD-TYPE                 21             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEFB119 MUTATED                                                                                          2
  DEFB119 WILD-TYPE                                                                                       30
                   vv
clus                REGIONAL LYMPH NODE
  DEFB119 MUTATED                     2
  DEFB119 WILD-TYPE                 103
D67V3, multiclass
                                                                                          clus
vv                                                                                         DEFB119 MUTATED
  DISTANT METASTASIS                                                                                     2
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               2
  REGIONAL LYMPH NODE                                                                                    2
                                                                                          clus
vv                                                                                         DEFB119 WILD-TYPE
  DISTANT METASTASIS                                                                                      21
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                30
  REGIONAL LYMPH NODE                                                                                    103
D67V4, binary
                   cls
clus                 0  1
  DEFB119 MUTATED    2  4
  DEFB119 WILD-TYPE 57 98
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB119 MUTATED      2    4
  DEFB119 WILD-TYPE   57   98
        clus
vv       DEFB119 MUTATED DEFB119 WILD-TYPE
  FEMALE               2                57
  MALE                 4                98
                   vv
clus                 M0  M1 M1A M1B M1C
  DEFB119 MUTATED     5   0   0   0   0
  DEFB119 WILD-TYPE 135   2   1   2   2
D67V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEFB119 MUTATED    4  0   0   0  0   0   1   0  0  0
  DEFB119 WILD-TYPE 84  2   7  15  1   4   9   5 15  1
D67V6, multiclass
D67V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEFB119 MUTATED             1       1        0        1        0         0
  DEFB119 WILD-TYPE           3      15       10       12       18         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DEFB119 MUTATED           1         0         0          0          1
  DEFB119 WILD-TYPE         8         7         8          6         17
                   vv
clus                STAGE IIIC STAGE IV
  DEFB119 MUTATED            0        0
  DEFB119 WILD-TYPE         21        5
D67V8, multiclass

Clustering(68) Variable = KLHL4 MUTATION ANALYSIS
D68V1, survival
                 sevent
clus2              0  1
  KLHL4 MUTATED    7  4
  KLHL4 WILD-TYPE 29 45
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             11              74 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
              4              45 
$`KLHL4 MUTATED`
TCGA-D3-A2JF TCGA-DA-A1IC TCGA-DA-A3F5 TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L 
       30.87         6.64        17.56        37.97         4.41         1.08 
TCGA-EE-A29R TCGA-ER-A19D TCGA-FW-A3R5 TCGA-GN-A262 TCGA-GN-A266 
        8.84         3.52         1.02        24.85        10.09 

$`KLHL4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       22.36        19.36         7.00        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        1.12         1.35        12.20         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29N 
        8.81         7.96        11.15        38.63        27.12         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       12.03         8.12         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J 
       25.28        23.90         9.67         8.94        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
        0.20        15.35        31.33        84.72        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  KLHL4 MUTATED KLHL4 WILD-TYPE 
           1.02            0.20 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
          37.97           98.76 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
          8.840          12.595 
[1] "1.0 - 38.0 (8.8)"  "0.2 - 98.8 (12.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED"   "KLHL4 MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-GN-A26D 
"KLHL4 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED"   "KLHL4 MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-GN-A26D 
"KLHL4 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED"   "KLHL4 MUTATED" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-GN-A26D 
"KLHL4 WILD-TYPE" 
[1] "hr=" "1.2"
D68V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  KLHL4 MUTATED                    1             0
  KLHL4 WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  KLHL4 MUTATED                                                                                          6
  KLHL4 WILD-TYPE                                                                                       26
                 vv
clus              REGIONAL LYMPH NODE
  KLHL4 MUTATED                     9
  KLHL4 WILD-TYPE                  96
D68V3, multiclass
                                                                                          clus
vv                                                                                         KLHL4 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             6
  REGIONAL LYMPH NODE                                                                                  9
                                                                                          clus
vv                                                                                         KLHL4 WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              26
  REGIONAL LYMPH NODE                                                                                   96
D68V4, binary
                 cls
clus               0  1
  KLHL4 MUTATED    7  9
  KLHL4 WILD-TYPE 52 93
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED      7    9
  KLHL4 WILD-TYPE   52   93
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  FEMALE             7              52
  MALE               9              93
                 vv
clus               M0  M1 M1A M1B M1C
  KLHL4 MUTATED    13   0   0   0   0
  KLHL4 WILD-TYPE 127   2   1   2   2
D68V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  KLHL4 MUTATED    8  0   0   1  1   0   0   1  2  0
  KLHL4 WILD-TYPE 80  2   7  14  0   4  10   4 13  1
D68V6, multiclass
D68V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  KLHL4 MUTATED             0       1        3        2        1         0
  KLHL4 WILD-TYPE           4      15        7       11       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  KLHL4 MUTATED           1         0         1          0          1
  KLHL4 WILD-TYPE         8         7         7          6         17
                 vv
clus              STAGE IIIC STAGE IV
  KLHL4 MUTATED            3        0
  KLHL4 WILD-TYPE         18        5
D68V8, multiclass

Clustering(69) Variable = NR1H4 MUTATION ANALYSIS
D69V1, survival
                 sevent
clus2              0  1
  NR1H4 MUTATED    4  1
  NR1H4 WILD-TYPE 32 48
  NR1H4 MUTATED NR1H4 WILD-TYPE 
              5              80 
  NR1H4 MUTATED NR1H4 WILD-TYPE 
              1              48 
$`NR1H4 MUTATED`
TCGA-D3-A1Q6 TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A3F8 TCGA-FW-A3R5 
       70.16        48.79        39.19        14.83         1.02 

$`NR1H4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
        8.38        21.14        11.41        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 
        2.86        35.80        51.12        10.03        13.68         9.99 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
       44.52        36.69        25.15         4.93        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       19.36         7.00        17.56        11.57         6.31         1.12 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        1.35        12.20         4.27        36.07         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        7.96        37.97        11.15        38.63         4.41         1.08 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       27.12         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        2.43         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         0.20        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       24.85        31.33        84.72        10.09        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  NR1H4 MUTATED NR1H4 WILD-TYPE 
           1.02            0.20 
  NR1H4 MUTATED NR1H4 WILD-TYPE 
          70.16           98.76 
  NR1H4 MUTATED NR1H4 WILD-TYPE 
          39.19           11.80 
[1] "1.0 - 70.2 (39.2)" "0.2 - 98.8 (11.8)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-GN-A26D 
"NR1H4 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-GN-A26D 
"NR1H4 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-GN-A26D 
"NR1H4 WILD-TYPE" 
[1] "hr=" "4.9"
D69V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  NR1H4 MUTATED                    1             0
  NR1H4 WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  NR1H4 MUTATED                                                                                          2
  NR1H4 WILD-TYPE                                                                                       30
                 vv
clus              REGIONAL LYMPH NODE
  NR1H4 MUTATED                     7
  NR1H4 WILD-TYPE                  98
D69V3, multiclass
                                                                                          clus
vv                                                                                         NR1H4 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  7
                                                                                          clus
vv                                                                                         NR1H4 WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   98
D69V4, binary
                 cls
clus               0  1
  NR1H4 MUTATED    2  8
  NR1H4 WILD-TYPE 57 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NR1H4 MUTATED      2    8
  NR1H4 WILD-TYPE   57   94
        clus
vv       NR1H4 MUTATED NR1H4 WILD-TYPE
  FEMALE             2              57
  MALE               8              94
                 vv
clus               M0  M1 M1A M1B M1C
  NR1H4 MUTATED     9   0   0   0   0
  NR1H4 WILD-TYPE 131   2   1   2   2
D69V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  NR1H4 MUTATED    2  0   1   1  1   0   2   1  1  0
  NR1H4 WILD-TYPE 86  2   6  14  0   4   8   4 14  1
D69V6, multiclass
D69V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  NR1H4 MUTATED             0       0        0        1        1         0
  NR1H4 WILD-TYPE           4      16       10       12       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  NR1H4 MUTATED           0         0         2          1          3
  NR1H4 WILD-TYPE         9         7         6          5         15
                 vv
clus              STAGE IIIC STAGE IV
  NR1H4 MUTATED            1        0
  NR1H4 WILD-TYPE         20        5
D69V8, multiclass

Clustering(70) Variable = IL32 MUTATION ANALYSIS
D70V1, survival
                sevent
clus2             0  1
  IL32 MUTATED    1  0
  IL32 WILD-TYPE 35 49
  IL32 MUTATED IL32 WILD-TYPE 
             1             84 
  IL32 MUTATED IL32 WILD-TYPE 
             0             49 
$`IL32 MUTATED`
TCGA-D3-A2JF 
       30.87 

$`IL32 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       38.63         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        8.81         0.20         1.02        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        16.21        15.39        12.16        14.70 

  IL32 MUTATED IL32 WILD-TYPE 
         30.87           0.20 
  IL32 MUTATED IL32 WILD-TYPE 
         30.87          98.76 
  IL32 MUTATED IL32 WILD-TYPE 
        30.870         12.095 
[1] "30.9 - 30.9 (30.9)" "0.2 - 98.8 (12.1)" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" "IL32 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A26D 
"IL32 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" "IL32 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A26D 
"IL32 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" "IL32 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A26D 
"IL32 WILD-TYPE" 
[1] "Remove cluster labels:" "IL32 MUTATED"          
clus
  IL32 MUTATED IL32 WILD-TYPE 
             1             84 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J     TCGA-ER-A19L 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1     TCGA-ER-A3ET 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5     TCGA-GN-A261 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
D70V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  IL32 MUTATED                    2             0
  IL32 WILD-TYPE                 21             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  IL32 MUTATED                                                                                          1
  IL32 WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  IL32 MUTATED                     4
  IL32 WILD-TYPE                 101
D70V3, multiclass
                                                                                          clus
vv                                                                                         IL32 MUTATED
  DISTANT METASTASIS                                                                                  2
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                 4
                                                                                          clus
vv                                                                                         IL32 WILD-TYPE
  DISTANT METASTASIS                                                                                   21
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                 101
D70V4, binary
                cls
clus              0  1
  IL32 MUTATED    3  4
  IL32 WILD-TYPE 56 98
[1] "tbl2"
                cls
clus             [,1] [,2]
  IL32 MUTATED      3    4
  IL32 WILD-TYPE   56   98
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  FEMALE            3             56
  MALE              4             98
                vv
clus              M0  M1 M1A M1B M1C
  IL32 MUTATED     7   0   0   0   0
  IL32 WILD-TYPE 133   2   1   2   2
D70V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  IL32 MUTATED    7  0   0   0  0   0   0   0  0  0
  IL32 WILD-TYPE 81  2   7  15  1   4  10   5 15  1
D70V6, multiclass
D70V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  IL32 MUTATED             0       0        1        0        5         0
  IL32 WILD-TYPE           4      16        9       13       13         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  IL32 MUTATED           1         0         0          0          0          0
  IL32 WILD-TYPE         8         7         8          6         18         21
                vv
clus             STAGE IV
  IL32 MUTATED          0
  IL32 WILD-TYPE        5
D70V8, multiclass

Clustering(71) Variable = DGAT2L6 MUTATION ANALYSIS
D71V1, survival
                   sevent
clus2                0  1
  DGAT2L6 MUTATED    4  2
  DGAT2L6 WILD-TYPE 32 47
  DGAT2L6 MUTATED DGAT2L6 WILD-TYPE 
                6                79 
  DGAT2L6 MUTATED DGAT2L6 WILD-TYPE 
                2                47 
$`DGAT2L6 MUTATED`
TCGA-DA-A1HY TCGA-EE-A182 TCGA-EE-A29D TCGA-EE-A29M TCGA-EE-A29S TCGA-FW-A3R5 
       51.12         1.35        11.15        27.12         9.99         1.02 

$`DGAT2L6 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 
        4.01         2.86        48.79        35.80        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.12        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
        5.13         8.81         7.96        37.97        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29V 
        1.08         9.47        12.03         8.12         8.84         2.43 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       78.44         6.58         8.81         0.20        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       31.33        84.72        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  DGAT2L6 MUTATED DGAT2L6 WILD-TYPE 
             1.02              0.20 
  DGAT2L6 MUTATED DGAT2L6 WILD-TYPE 
            51.12             98.76 
  DGAT2L6 MUTATED DGAT2L6 WILD-TYPE 
            10.57             12.20 
[1] "1.0 - 51.1 (10.6)" "0.2 - 98.8 (12.2)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-GN-A26D 
"DGAT2L6 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-GN-A26D 
"DGAT2L6 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-GN-A26D 
"DGAT2L6 WILD-TYPE" 
[1] "hr=" "1.5"
D71V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  DGAT2L6 MUTATED                    1             1
  DGAT2L6 WILD-TYPE                 22             0
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DGAT2L6 MUTATED                                                                                          0
  DGAT2L6 WILD-TYPE                                                                                       32
                   vv
clus                REGIONAL LYMPH NODE
  DGAT2L6 MUTATED                     7
  DGAT2L6 WILD-TYPE                  98
D71V3, multiclass
                                                                                          clus
vv                                                                                         DGAT2L6 MUTATED
  DISTANT METASTASIS                                                                                     1
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               0
  REGIONAL LYMPH NODE                                                                                    7
                                                                                          clus
vv                                                                                         DGAT2L6 WILD-TYPE
  DISTANT METASTASIS                                                                                      22
  PRIMARY TUMOR                                                                                            0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                32
  REGIONAL LYMPH NODE                                                                                     98
D71V4, binary
                   cls
clus                 0  1
  DGAT2L6 MUTATED    3  6
  DGAT2L6 WILD-TYPE 56 96
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DGAT2L6 MUTATED      3    6
  DGAT2L6 WILD-TYPE   56   96
        clus
vv       DGAT2L6 MUTATED DGAT2L6 WILD-TYPE
  FEMALE               3                56
  MALE                 6                96
                   vv
clus                 M0  M1 M1A M1B M1C
  DGAT2L6 MUTATED     9   0   0   0   0
  DGAT2L6 WILD-TYPE 131   2   1   2   2
D71V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DGAT2L6 MUTATED    4  0   0   2  1   1   0   0  1  0
  DGAT2L6 WILD-TYPE 84  2   7  13  0   3  10   5 14  1
D71V6, multiclass
D71V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DGAT2L6 MUTATED             0       1        0        1        1         1
  DGAT2L6 WILD-TYPE           4      15       10       12       17         6
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DGAT2L6 MUTATED           0         0         1          0          0
  DGAT2L6 WILD-TYPE         9         7         7          6         18
                   vv
clus                STAGE IIIC STAGE IV
  DGAT2L6 MUTATED            3        0
  DGAT2L6 WILD-TYPE         18        5
D71V8, multiclass

Clustering(72) Variable = OR8D4 MUTATION ANALYSIS
D72V1, survival
                 sevent
clus2              0  1
  OR8D4 MUTATED    3  1
  OR8D4 WILD-TYPE 33 48
  OR8D4 MUTATED OR8D4 WILD-TYPE 
              4              81 
  OR8D4 MUTATED OR8D4 WILD-TYPE 
              1              48 
$`OR8D4 MUTATED`
TCGA-DA-A1HV TCGA-EE-A29D TCGA-EE-A2A1 TCGA-FW-A3R5 
       48.79        11.15        25.28         1.02 

$`OR8D4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        4.01         2.86        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E 
       36.07         5.13         8.81         7.96        37.97        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 
        8.84         9.99         2.43         8.09        11.31        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       15.35        24.85        31.33        84.72        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  OR8D4 MUTATED OR8D4 WILD-TYPE 
           1.02            0.20 
  OR8D4 MUTATED OR8D4 WILD-TYPE 
          48.79           98.76 
  OR8D4 MUTATED OR8D4 WILD-TYPE 
         18.215          12.160 
[1] "1.0 - 48.8 (18.2)" "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "OR8D4 MUTATED" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "OR8D4 MUTATED" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR8D4 WILD-TYPE"   "OR8D4 MUTATED" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE"   "OR8D4 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-GN-A26D 
"OR8D4 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "OR8D4 MUTATED" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "OR8D4 MUTATED" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR8D4 WILD-TYPE"   "OR8D4 MUTATED" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE"   "OR8D4 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-GN-A26D 
"OR8D4 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "OR8D4 MUTATED" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "OR8D4 MUTATED" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR8D4 WILD-TYPE"   "OR8D4 MUTATED" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE"   "OR8D4 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-GN-A26D 
"OR8D4 WILD-TYPE" 
[1] "hr=" "2.6"
D72V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OR8D4 MUTATED                    0             0
  OR8D4 WILD-TYPE                 23             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR8D4 MUTATED                                                                                          1
  OR8D4 WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  OR8D4 MUTATED                     8
  OR8D4 WILD-TYPE                  97
D72V3, multiclass
                                                                                          clus
vv                                                                                         OR8D4 MUTATED
  DISTANT METASTASIS                                                                                   0
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  8
                                                                                          clus
vv                                                                                         OR8D4 WILD-TYPE
  DISTANT METASTASIS                                                                                    23
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   97
D72V4, binary
                 cls
clus               0  1
  OR8D4 MUTATED    3  6
  OR8D4 WILD-TYPE 56 96
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8D4 MUTATED      3    6
  OR8D4 WILD-TYPE   56   96
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  FEMALE             3              56
  MALE               6              96
                 vv
clus               M0  M1 M1A M1B M1C
  OR8D4 MUTATED     8   0   0   0   0
  OR8D4 WILD-TYPE 132   2   1   2   2
D72V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OR8D4 MUTATED    4  0   1   1  1   0   1   0  0  0
  OR8D4 WILD-TYPE 84  2   6  14  0   4   9   5 15  1
D72V6, multiclass
D72V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR8D4 MUTATED             0       1        0        1        1         0
  OR8D4 WILD-TYPE           4      15       10       12       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR8D4 MUTATED           1         0         1          0          2
  OR8D4 WILD-TYPE         8         7         7          6         16
                 vv
clus              STAGE IIIC STAGE IV
  OR8D4 MUTATED            1        0
  OR8D4 WILD-TYPE         20        5
D72V8, multiclass

Clustering(73) Variable = GRXCR2 MUTATION ANALYSIS
D73V1, survival
                  sevent
clus2               0  1
  GRXCR2 MUTATED    6  3
  GRXCR2 WILD-TYPE 30 46
  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
               9               76 
  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
               3               46 
$`GRXCR2 MUTATED`
TCGA-DA-A1I1 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E 
       39.19        17.56        14.83         1.12        11.15        38.63 
TCGA-EE-A29M TCGA-FW-A3R5 TCGA-GN-A266 
       27.12         1.02        10.09 

$`GRXCR2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-EE-A17X TCGA-EE-A17Z 
       22.36         6.64        19.36         7.00        11.57         6.31 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        1.35        12.20         4.27        36.07         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
        7.96        37.97         4.41         1.08         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        8.81         0.20        15.35        24.85        31.33        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
            1.02             0.20 
  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
           39.19            98.76 
  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
          14.830           12.095 
[1] "1.0 - 39.2 (14.8)" "0.2 - 98.8 (12.1)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
  "GRXCR2 MUTATED"   "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-GN-A26D 
"GRXCR2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
  "GRXCR2 MUTATED"   "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-GN-A26D 
"GRXCR2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
  "GRXCR2 MUTATED"   "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-GN-A26D 
"GRXCR2 WILD-TYPE" 
[1] "hr=" "1.9"
D73V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  GRXCR2 MUTATED                    0             1
  GRXCR2 WILD-TYPE                 23             0
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  GRXCR2 MUTATED                                                                                          2
  GRXCR2 WILD-TYPE                                                                                       30
                  vv
clus               REGIONAL LYMPH NODE
  GRXCR2 MUTATED                     9
  GRXCR2 WILD-TYPE                  96
D73V3, multiclass
                                                                                          clus
vv                                                                                         GRXCR2 MUTATED
  DISTANT METASTASIS                                                                                    0
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              2
  REGIONAL LYMPH NODE                                                                                   9
                                                                                          clus
vv                                                                                         GRXCR2 WILD-TYPE
  DISTANT METASTASIS                                                                                     23
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               30
  REGIONAL LYMPH NODE                                                                                    96
D73V4, binary
                  cls
clus                0  1
  GRXCR2 MUTATED    4  8
  GRXCR2 WILD-TYPE 55 94
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRXCR2 MUTATED      4    8
  GRXCR2 WILD-TYPE   55   94
        clus
vv       GRXCR2 MUTATED GRXCR2 WILD-TYPE
  FEMALE              4               55
  MALE                8               94
                  vv
clus                M0  M1 M1A M1B M1C
  GRXCR2 MUTATED    10   0   0   0   0
  GRXCR2 WILD-TYPE 130   2   1   2   2
D73V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  GRXCR2 MUTATED    4  0   0   2  1   0   1   0  2  0
  GRXCR2 WILD-TYPE 84  2   7  13  0   4   9   5 13  1
D73V6, multiclass
D73V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GRXCR2 MUTATED             0       0        2        1        1         0
  GRXCR2 WILD-TYPE           4      16        8       12       17         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  GRXCR2 MUTATED           0         0         1          0          2
  GRXCR2 WILD-TYPE         9         7         7          6         16
                  vv
clus               STAGE IIIC STAGE IV
  GRXCR2 MUTATED            3        0
  GRXCR2 WILD-TYPE         18        5
D73V8, multiclass

Clustering(74) Variable = OR5H2 MUTATION ANALYSIS
D74V1, survival
                 sevent
clus2              0  1
  OR5H2 MUTATED    5  2
  OR5H2 WILD-TYPE 31 47
  OR5H2 MUTATED OR5H2 WILD-TYPE 
              7              78 
  OR5H2 MUTATED OR5H2 WILD-TYPE 
              2              47 
$`OR5H2 MUTATED`
TCGA-DA-A1HV TCGA-DA-A1I7 TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A29E TCGA-EE-A29R 
       48.79        36.69         1.12         1.35        38.63         8.84 
TCGA-FW-A3R5 
        1.02 

$`OR5H2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        4.01         2.86        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
       13.68         9.99        44.52        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        6.31        12.20         4.27        36.07         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
        7.96        37.97        11.15         4.41         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
        9.47        12.03         8.12         9.99         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
       11.31        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        6.58         8.81         0.20        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        16.21        15.39        12.16        14.70 

  OR5H2 MUTATED OR5H2 WILD-TYPE 
           1.02            0.20 
  OR5H2 MUTATED OR5H2 WILD-TYPE 
          48.79           98.76 
  OR5H2 MUTATED OR5H2 WILD-TYPE 
           8.84           12.18 
[1] "1.0 - 48.8 (8.8)"  "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
  "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
  "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-GN-A26D 
"OR5H2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
  "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
  "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-GN-A26D 
"OR5H2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
  "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
  "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-GN-A26D 
"OR5H2 WILD-TYPE" 
[1] "hr=" "2"  
D74V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OR5H2 MUTATED                    2             0
  OR5H2 WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR5H2 MUTATED                                                                                          2
  OR5H2 WILD-TYPE                                                                                       30
                 vv
clus              REGIONAL LYMPH NODE
  OR5H2 MUTATED                     8
  OR5H2 WILD-TYPE                  97
D74V3, multiclass
                                                                                          clus
vv                                                                                         OR5H2 MUTATED
  DISTANT METASTASIS                                                                                   2
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  8
                                                                                          clus
vv                                                                                         OR5H2 WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   97
D74V4, binary
                 cls
clus               0  1
  OR5H2 MUTATED    5  7
  OR5H2 WILD-TYPE 54 95
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5H2 MUTATED      5    7
  OR5H2 WILD-TYPE   54   95
        clus
vv       OR5H2 MUTATED OR5H2 WILD-TYPE
  FEMALE             5              54
  MALE               7              95
                 vv
clus               M0  M1 M1A M1B M1C
  OR5H2 MUTATED    12   0   0   0   0
  OR5H2 WILD-TYPE 128   2   1   2   2
D74V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OR5H2 MUTATED    6  0   0   3  1   0   2   0  0  0
  OR5H2 WILD-TYPE 82  2   7  12  0   4   8   5 15  1
D74V6, multiclass
D74V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR5H2 MUTATED             0       1        0        0        4         0
  OR5H2 WILD-TYPE           4      15       10       13       14         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR5H2 MUTATED           1         0         1          0          3
  OR5H2 WILD-TYPE         8         7         7          6         15
                 vv
clus              STAGE IIIC STAGE IV
  OR5H2 MUTATED            2        0
  OR5H2 WILD-TYPE         19        5
D74V8, multiclass

Clustering(75) Variable = SIGLEC14 MUTATION ANALYSIS
D75V1, survival
                    sevent
clus2                 0  1
  SIGLEC14 MUTATED    3  2
  SIGLEC14 WILD-TYPE 33 47
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 5                 80 
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 2                 47 
$`SIGLEC14 MUTATED`
TCGA-D3-A2JF TCGA-DA-A1I1 TCGA-EE-A29V TCGA-FW-A3R5 TCGA-GN-A266 
       30.87        39.19         2.43         1.02        10.09 

$`SIGLEC14 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 
        2.86        48.79        35.80        51.12        10.03        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        6.31         1.12         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        5.13         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       15.35        24.85        31.33        84.72        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
              1.02               0.20 
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
             39.19              98.76 
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
             10.09              12.18 
[1] "1.0 - 39.2 (10.1)" "0.2 - 98.8 (12.2)"
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A26D 
"SIGLEC14 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A26D 
"SIGLEC14 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
"SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A26D 
"SIGLEC14 WILD-TYPE" 
[1] "hr=" "1.3"
D75V2, continuous
                    vv
clus                 DISTANT METASTASIS PRIMARY TUMOR
  SIGLEC14 MUTATED                    3             0
  SIGLEC14 WILD-TYPE                 20             1
                    vv
clus                 REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  SIGLEC14 MUTATED                                                                                          2
  SIGLEC14 WILD-TYPE                                                                                       30
                    vv
clus                 REGIONAL LYMPH NODE
  SIGLEC14 MUTATED                     3
  SIGLEC14 WILD-TYPE                 102
D75V3, multiclass
                                                                                          clus
vv                                                                                         SIGLEC14 MUTATED
  DISTANT METASTASIS                                                                                      3
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                2
  REGIONAL LYMPH NODE                                                                                     3
                                                                                          clus
vv                                                                                         SIGLEC14 WILD-TYPE
  DISTANT METASTASIS                                                                                       20
  PRIMARY TUMOR                                                                                             1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 30
  REGIONAL LYMPH NODE                                                                                     102
D75V4, binary
                    cls
clus                  0  1
  SIGLEC14 MUTATED    0  8
  SIGLEC14 WILD-TYPE 59 94
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SIGLEC14 MUTATED      0    8
  SIGLEC14 WILD-TYPE   59   94
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  FEMALE                0                 59
  MALE                  8                 94
                    vv
clus                  M0  M1 M1A M1B M1C
  SIGLEC14 MUTATED     7   0   0   0   0
  SIGLEC14 WILD-TYPE 133   2   1   2   2
D75V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  SIGLEC14 MUTATED    4  0   0   1  1   0   0   0  1  0
  SIGLEC14 WILD-TYPE 84  2   7  14  0   4  10   5 14  1
D75V6, multiclass
D75V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SIGLEC14 MUTATED             0       1        1        0        0         0
  SIGLEC14 WILD-TYPE           4      15        9       13       18         7
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SIGLEC14 MUTATED           2         0         1          0          0
  SIGLEC14 WILD-TYPE         7         7         7          6         18
                    vv
clus                 STAGE IIIC STAGE IV
  SIGLEC14 MUTATED            2        0
  SIGLEC14 WILD-TYPE         19        5
D75V8, multiclass

Clustering(76) Variable = ZNF479 MUTATION ANALYSIS
D76V1, survival
                  sevent
clus2               0  1
  ZNF479 MUTATED    7  3
  ZNF479 WILD-TYPE 29 46
  ZNF479 MUTATED ZNF479 WILD-TYPE 
              10               75 
  ZNF479 MUTATED ZNF479 WILD-TYPE 
               3               46 
$`ZNF479 MUTATED`
TCGA-D3-A3MV TCGA-DA-A1IB TCGA-EE-A182 TCGA-EE-A29D TCGA-EE-A2A1 TCGA-ER-A19M 
        5.39        22.36         1.35        11.15        25.28        28.64 
TCGA-ER-A3ET TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A262 
        6.58         0.20         1.02        24.85 

$`ZNF479 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 
       15.25        45.70        13.32        24.00         9.30         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        6.31         1.12        12.20         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        8.81         7.96        37.97        38.63         4.41         1.08 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       27.12         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        2.43         8.09        11.31        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
        3.52        11.11         4.18        12.99        42.84        78.44 
TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
        8.81        15.35        31.33        84.72        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  ZNF479 MUTATED ZNF479 WILD-TYPE 
            0.20             1.08 
  ZNF479 MUTATED ZNF479 WILD-TYPE 
           28.64            98.76 
  ZNF479 MUTATED ZNF479 WILD-TYPE 
           8.865           12.200 
[1] "0.2 - 28.6 (8.9)"  "1.1 - 98.8 (12.2)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED"   "ZNF479 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-GN-A26D 
"ZNF479 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED"   "ZNF479 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-GN-A26D 
"ZNF479 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED"   "ZNF479 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-GN-A26D 
"ZNF479 WILD-TYPE" 
[1] "hr=" "1.5"
D76V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  ZNF479 MUTATED                    2             0
  ZNF479 WILD-TYPE                 21             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ZNF479 MUTATED                                                                                          4
  ZNF479 WILD-TYPE                                                                                       28
                  vv
clus               REGIONAL LYMPH NODE
  ZNF479 MUTATED                     9
  ZNF479 WILD-TYPE                  96
D76V3, multiclass
                                                                                          clus
vv                                                                                         ZNF479 MUTATED
  DISTANT METASTASIS                                                                                    2
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              4
  REGIONAL LYMPH NODE                                                                                   9
                                                                                          clus
vv                                                                                         ZNF479 WILD-TYPE
  DISTANT METASTASIS                                                                                     21
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               28
  REGIONAL LYMPH NODE                                                                                    96
D76V4, binary
                  cls
clus                0  1
  ZNF479 MUTATED    6  9
  ZNF479 WILD-TYPE 53 93
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF479 MUTATED      6    9
  ZNF479 WILD-TYPE   53   93
        clus
vv       ZNF479 MUTATED ZNF479 WILD-TYPE
  FEMALE              6               53
  MALE                9               93
                  vv
clus                M0  M1 M1A M1B M1C
  ZNF479 MUTATED    13   1   0   0   0
  ZNF479 WILD-TYPE 127   1   1   2   2
D76V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  ZNF479 MUTATED    7  0   1   2  1   1   1   1  0  0
  ZNF479 WILD-TYPE 81  2   6  13  0   3   9   4 15  1
D76V6, multiclass
D76V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ZNF479 MUTATED             0       0        1        2        2         0
  ZNF479 WILD-TYPE           4      16        9       11       16         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ZNF479 MUTATED           1         0         2          1          1
  ZNF479 WILD-TYPE         8         7         6          5         17
                  vv
clus               STAGE IIIC STAGE IV
  ZNF479 MUTATED            3        1
  ZNF479 WILD-TYPE         18        4
D76V8, multiclass

Clustering(77) Variable = C2 MUTATION ANALYSIS
D77V1, survival
              sevent
clus2           0  1
  C2 MUTATED    3  2
  C2 WILD-TYPE 33 47
  C2 MUTATED C2 WILD-TYPE 
           5           80 
  C2 MUTATED C2 WILD-TYPE 
           2           47 
$`C2 MUTATED`
TCGA-DA-A1HV TCGA-DA-A1IB TCGA-EE-A183 TCGA-FW-A3R5 TCGA-GN-A266 
       48.79        22.36        12.20         1.02        10.09 

$`C2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        4.01         2.86        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        6.31         1.12         1.35         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        8.81         7.96        37.97        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        1.08        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        9.99         2.43         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       15.35        24.85        31.33        84.72        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  C2 MUTATED C2 WILD-TYPE 
        1.02         0.20 
  C2 MUTATED C2 WILD-TYPE 
       48.79        98.76 
  C2 MUTATED C2 WILD-TYPE 
      12.200       12.095 
[1] "1.0 - 48.8 (12.2)" "0.2 - 98.8 (12.1)"
  TCGA-D3-A1Q1   TCGA-D3-A1Q5   TCGA-D3-A1Q6   TCGA-D3-A1Q7   TCGA-D3-A1Q8 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-D3-A1Q9   TCGA-D3-A2J6   TCGA-D3-A2J8   TCGA-D3-A2J9   TCGA-D3-A2JD 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-D3-A2JF   TCGA-D3-A2JK   TCGA-D3-A3C6   TCGA-D3-A3CC   TCGA-D3-A3CE 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-D3-A3CF   TCGA-D3-A3MO   TCGA-D3-A3MV   TCGA-D9-A3Z1   TCGA-D9-A3Z3 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-DA-A1HV   TCGA-DA-A1HW   TCGA-DA-A1HY   TCGA-DA-A1I0   TCGA-DA-A1I1 
  "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-DA-A1I2   TCGA-DA-A1I4   TCGA-DA-A1I5   TCGA-DA-A1I7   TCGA-DA-A1I8 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-DA-A1IA   TCGA-DA-A1IB   TCGA-DA-A1IC   TCGA-DA-A3F2   TCGA-DA-A3F3 
"C2 WILD-TYPE"   "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-DA-A3F5   TCGA-DA-A3F8   TCGA-EE-A17X   TCGA-EE-A17Z   TCGA-EE-A181 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A182   TCGA-EE-A183   TCGA-EE-A185   TCGA-EE-A20B   TCGA-EE-A20F 
"C2 WILD-TYPE"   "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A20H   TCGA-EE-A29A   TCGA-EE-A29C   TCGA-EE-A29D   TCGA-EE-A29E 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A29H   TCGA-EE-A29L   TCGA-EE-A29M   TCGA-EE-A29N   TCGA-EE-A29P 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A29Q   TCGA-EE-A29R   TCGA-EE-A29S   TCGA-EE-A29V   TCGA-EE-A29X 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A2A0   TCGA-EE-A2A1   TCGA-EE-A2A2   TCGA-EE-A2A5   TCGA-EE-A2A6 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-ER-A19D   TCGA-ER-A19F   TCGA-ER-A19J   TCGA-ER-A19L   TCGA-ER-A19M 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-ER-A19N   TCGA-ER-A1A1   TCGA-ER-A3ET   TCGA-FS-A1ZR   TCGA-FW-A3I3 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-FW-A3R5   TCGA-GN-A261   TCGA-GN-A262   TCGA-GN-A264   TCGA-GN-A265 
  "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-GN-A266   TCGA-GN-A267   TCGA-GN-A268   TCGA-GN-A26A   TCGA-GN-A26D 
  "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-D3-A1Q1   TCGA-D3-A1Q5   TCGA-D3-A1Q6   TCGA-D3-A1Q7   TCGA-D3-A1Q8 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-D3-A1Q9   TCGA-D3-A2J6   TCGA-D3-A2J8   TCGA-D3-A2J9   TCGA-D3-A2JD 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-D3-A2JF   TCGA-D3-A2JK   TCGA-D3-A3C6   TCGA-D3-A3CC   TCGA-D3-A3CE 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-D3-A3CF   TCGA-D3-A3MO   TCGA-D3-A3MV   TCGA-D9-A3Z1   TCGA-D9-A3Z3 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-DA-A1HV   TCGA-DA-A1HW   TCGA-DA-A1HY   TCGA-DA-A1I0   TCGA-DA-A1I1 
  "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-DA-A1I2   TCGA-DA-A1I4   TCGA-DA-A1I5   TCGA-DA-A1I7   TCGA-DA-A1I8 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-DA-A1IA   TCGA-DA-A1IB   TCGA-DA-A1IC   TCGA-DA-A3F2   TCGA-DA-A3F3 
"C2 WILD-TYPE"   "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-DA-A3F5   TCGA-DA-A3F8   TCGA-EE-A17X   TCGA-EE-A17Z   TCGA-EE-A181 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A182   TCGA-EE-A183   TCGA-EE-A185   TCGA-EE-A20B   TCGA-EE-A20F 
"C2 WILD-TYPE"   "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A20H   TCGA-EE-A29A   TCGA-EE-A29C   TCGA-EE-A29D   TCGA-EE-A29E 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A29H   TCGA-EE-A29L   TCGA-EE-A29M   TCGA-EE-A29N   TCGA-EE-A29P 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A29Q   TCGA-EE-A29R   TCGA-EE-A29S   TCGA-EE-A29V   TCGA-EE-A29X 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A2A0   TCGA-EE-A2A1   TCGA-EE-A2A2   TCGA-EE-A2A5   TCGA-EE-A2A6 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-ER-A19D   TCGA-ER-A19F   TCGA-ER-A19J   TCGA-ER-A19L   TCGA-ER-A19M 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-ER-A19N   TCGA-ER-A1A1   TCGA-ER-A3ET   TCGA-FS-A1ZR   TCGA-FW-A3I3 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-FW-A3R5   TCGA-GN-A261   TCGA-GN-A262   TCGA-GN-A264   TCGA-GN-A265 
  "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-GN-A266   TCGA-GN-A267   TCGA-GN-A268   TCGA-GN-A26A   TCGA-GN-A26D 
  "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-D3-A1Q1   TCGA-D3-A1Q5   TCGA-D3-A1Q6   TCGA-D3-A1Q7   TCGA-D3-A1Q8 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-D3-A1Q9   TCGA-D3-A2J6   TCGA-D3-A2J8   TCGA-D3-A2J9   TCGA-D3-A2JD 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-D3-A2JF   TCGA-D3-A2JK   TCGA-D3-A3C6   TCGA-D3-A3CC   TCGA-D3-A3CE 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-D3-A3CF   TCGA-D3-A3MO   TCGA-D3-A3MV   TCGA-D9-A3Z1   TCGA-D9-A3Z3 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-DA-A1HV   TCGA-DA-A1HW   TCGA-DA-A1HY   TCGA-DA-A1I0   TCGA-DA-A1I1 
  "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-DA-A1I2   TCGA-DA-A1I4   TCGA-DA-A1I5   TCGA-DA-A1I7   TCGA-DA-A1I8 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-DA-A1IA   TCGA-DA-A1IB   TCGA-DA-A1IC   TCGA-DA-A3F2   TCGA-DA-A3F3 
"C2 WILD-TYPE"   "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-DA-A3F5   TCGA-DA-A3F8   TCGA-EE-A17X   TCGA-EE-A17Z   TCGA-EE-A181 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A182   TCGA-EE-A183   TCGA-EE-A185   TCGA-EE-A20B   TCGA-EE-A20F 
"C2 WILD-TYPE"   "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A20H   TCGA-EE-A29A   TCGA-EE-A29C   TCGA-EE-A29D   TCGA-EE-A29E 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A29H   TCGA-EE-A29L   TCGA-EE-A29M   TCGA-EE-A29N   TCGA-EE-A29P 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A29Q   TCGA-EE-A29R   TCGA-EE-A29S   TCGA-EE-A29V   TCGA-EE-A29X 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-EE-A2A0   TCGA-EE-A2A1   TCGA-EE-A2A2   TCGA-EE-A2A5   TCGA-EE-A2A6 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-ER-A19D   TCGA-ER-A19F   TCGA-ER-A19J   TCGA-ER-A19L   TCGA-ER-A19M 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-ER-A19N   TCGA-ER-A1A1   TCGA-ER-A3ET   TCGA-FS-A1ZR   TCGA-FW-A3I3 
"C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-FW-A3R5   TCGA-GN-A261   TCGA-GN-A262   TCGA-GN-A264   TCGA-GN-A265 
  "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
  TCGA-GN-A266   TCGA-GN-A267   TCGA-GN-A268   TCGA-GN-A26A   TCGA-GN-A26D 
  "C2 MUTATED" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" "C2 WILD-TYPE" 
[1] "hr=" "1.5"
D77V2, continuous
              vv
clus           DISTANT METASTASIS PRIMARY TUMOR
  C2 MUTATED                    0             0
  C2 WILD-TYPE                 23             1
              vv
clus           REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  C2 MUTATED                                                                                          1
  C2 WILD-TYPE                                                                                       31
              vv
clus           REGIONAL LYMPH NODE
  C2 MUTATED                     6
  C2 WILD-TYPE                  99
D77V3, multiclass
                                                                                          clus
vv                                                                                         C2 MUTATED
  DISTANT METASTASIS                                                                                0
  PRIMARY TUMOR                                                                                     0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)          1
  REGIONAL LYMPH NODE                                                                               6
                                                                                          clus
vv                                                                                         C2 WILD-TYPE
  DISTANT METASTASIS                                                                                 23
  PRIMARY TUMOR                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           31
  REGIONAL LYMPH NODE                                                                                99
D77V4, binary
              cls
clus            0  1
  C2 MUTATED    2  5
  C2 WILD-TYPE 57 97
[1] "tbl2"
              cls
clus           [,1] [,2]
  C2 MUTATED      2    5
  C2 WILD-TYPE   57   97
        clus
vv       C2 MUTATED C2 WILD-TYPE
  FEMALE          2           57
  MALE            5           97
              vv
clus            M0  M1 M1A M1B M1C
  C2 MUTATED     6   0   0   0   0
  C2 WILD-TYPE 134   2   1   2   2
D77V5, multiclass
              vv
clus           N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  C2 MUTATED    3  0   0   0  1   0   2   0  0  0
  C2 WILD-TYPE 85  2   7  15  0   4   8   5 15  1
D77V6, multiclass
D77V7, continuous
              vv
clus           I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  C2 MUTATED             0       3        0        0        0         0
  C2 WILD-TYPE           4      13       10       13       18         7
              vv
clus           STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  C2 MUTATED           0         0         1          0          1          1
  C2 WILD-TYPE         9         7         7          6         17         20
              vv
clus           STAGE IV
  C2 MUTATED          0
  C2 WILD-TYPE        5
D77V8, multiclass

Clustering(78) Variable = GH2 MUTATION ANALYSIS
D78V1, survival
               sevent
clus2            0  1
  GH2 MUTATED    2  1
  GH2 WILD-TYPE 34 48
  GH2 MUTATED GH2 WILD-TYPE 
            3            82 
  GH2 MUTATED GH2 WILD-TYPE 
            1            48 
$`GH2 MUTATED`
TCGA-EE-A29P TCGA-FW-A3R5 TCGA-GN-A266 
       12.03         1.02        10.09 

$`GH2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       11.15        38.63         4.41         1.08        27.12         9.47 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        8.81         0.20        15.35        24.85        31.33        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  GH2 MUTATED GH2 WILD-TYPE 
         1.02          0.20 
  GH2 MUTATED GH2 WILD-TYPE 
        12.03         98.76 
  GH2 MUTATED GH2 WILD-TYPE 
       10.090        12.595 
[1] "1.0 - 12.0 (10.1)" "0.2 - 98.8 (12.6)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE"   "GH2 MUTATED" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE"   "GH2 MUTATED" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE"   "GH2 MUTATED" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
[1] "hr=" "1.2"
D78V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  GH2 MUTATED                    0             0
  GH2 WILD-TYPE                 23             1
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  GH2 MUTATED                                                                                          3
  GH2 WILD-TYPE                                                                                       29
               vv
clus            REGIONAL LYMPH NODE
  GH2 MUTATED                     7
  GH2 WILD-TYPE                  98
D78V3, multiclass
                                                                                          clus
vv                                                                                         GH2 MUTATED
  DISTANT METASTASIS                                                                                 0
  PRIMARY TUMOR                                                                                      0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           3
  REGIONAL LYMPH NODE                                                                                7
                                                                                          clus
vv                                                                                         GH2 WILD-TYPE
  DISTANT METASTASIS                                                                                  23
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            29
  REGIONAL LYMPH NODE                                                                                 98
D78V4, binary
               cls
clus             0  1
  GH2 MUTATED    3  7
  GH2 WILD-TYPE 56 95
[1] "tbl2"
               cls
clus            [,1] [,2]
  GH2 MUTATED      3    7
  GH2 WILD-TYPE   56   95
        clus
vv       GH2 MUTATED GH2 WILD-TYPE
  FEMALE           3            56
  MALE             7            95
               vv
clus             M0  M1 M1A M1B M1C
  GH2 MUTATED     8   0   0   0   0
  GH2 WILD-TYPE 132   2   1   2   2
D78V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  GH2 MUTATED    6  0   0   0  1   1   0   0  0  0
  GH2 WILD-TYPE 82  2   7  15  0   3  10   5 15  1
D78V6, multiclass
D78V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GH2 MUTATED             0       0        3        0        2         0
  GH2 WILD-TYPE           4      16        7       13       16         7
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  GH2 MUTATED           0         1         1          1          0          0
  GH2 WILD-TYPE         9         6         7          5         18         21
               vv
clus            STAGE IV
  GH2 MUTATED          0
  GH2 WILD-TYPE        5
D78V8, multiclass

Clustering(79) Variable = GK2 MUTATION ANALYSIS
D79V1, survival
               sevent
clus2            0  1
  GK2 MUTATED    5  4
  GK2 WILD-TYPE 31 45
  GK2 MUTATED GK2 WILD-TYPE 
            9            76 
  GK2 MUTATED GK2 WILD-TYPE 
            4            45 
$`GK2 MUTATED`
TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-DA-A3F8 TCGA-EE-A20F TCGA-EE-A29M TCGA-FW-A3R5 
       30.87        15.25        14.83         5.13        27.12         1.02 
TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A26A 
       10.09        15.39        12.16 

$`GK2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3CC 
       10.26         8.38        21.14        11.41         6.35        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z 
        6.64        19.36         7.00        17.56        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H 
        1.12         1.35        12.20         4.27        36.07         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        7.96        37.97        11.15        38.63         4.41         1.08 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V 
        9.47        12.03         8.12         8.84         9.99         2.43 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       78.44         6.58         8.81         0.20        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26D 
       31.33        84.72        16.21        14.70 

  GK2 MUTATED GK2 WILD-TYPE 
         1.02          0.20 
  GK2 MUTATED GK2 WILD-TYPE 
        30.87         98.76 
  GK2 MUTATED GK2 WILD-TYPE 
        14.83         11.80 
[1] "1.0 - 30.9 (14.8)" "0.2 - 98.8 (11.8)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED"   "GK2 MUTATED" "GK2 WILD-TYPE" 
[1] "hr=" "1.2"
D79V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  GK2 MUTATED                    3             1
  GK2 WILD-TYPE                 20             0
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  GK2 MUTATED                                                                                          6
  GK2 WILD-TYPE                                                                                       26
               vv
clus            REGIONAL LYMPH NODE
  GK2 MUTATED                    11
  GK2 WILD-TYPE                  94
D79V3, multiclass
                                                                                          clus
vv                                                                                         GK2 MUTATED
  DISTANT METASTASIS                                                                                 3
  PRIMARY TUMOR                                                                                      1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           6
  REGIONAL LYMPH NODE                                                                               11
                                                                                          clus
vv                                                                                         GK2 WILD-TYPE
  DISTANT METASTASIS                                                                                  20
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            26
  REGIONAL LYMPH NODE                                                                                 94
D79V4, binary
               cls
clus             0  1
  GK2 MUTATED    8 13
  GK2 WILD-TYPE 51 89
[1] "tbl2"
               cls
clus            [,1] [,2]
  GK2 MUTATED      8   13
  GK2 WILD-TYPE   51   89
        clus
vv       GK2 MUTATED GK2 WILD-TYPE
  FEMALE           8            51
  MALE            13            89
               vv
clus             M0  M1 M1A M1B M1C
  GK2 MUTATED    19   0   0   0   0
  GK2 WILD-TYPE 121   2   1   2   2
D79V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  GK2 MUTATED   16  0   1   0  1   0   1   0  0  0
  GK2 WILD-TYPE 72  2   6  15  0   4   9   5 15  1
D79V6, multiclass
D79V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GK2 MUTATED             0       1        3        2        4         2
  GK2 WILD-TYPE           4      15        7       11       14         5
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  GK2 MUTATED           4         0         1          1          1          0
  GK2 WILD-TYPE         5         7         7          5         17         21
               vv
clus            STAGE IV
  GK2 MUTATED          0
  GK2 WILD-TYPE        5
D79V8, multiclass

Clustering(80) Variable = C2ORF40 MUTATION ANALYSIS
D80V1, survival
                   sevent
clus2                0  1
  C2ORF40 MUTATED    0  1
  C2ORF40 WILD-TYPE 36 48
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
                1                84 
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
                1                48 
$`C2ORF40 MUTATED`
TCGA-GN-A266 
       10.09 

$`C2ORF40 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       11.15        38.63         4.41         1.08        27.12         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
       12.03         8.12         8.84         9.99         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
       11.31        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 
        6.58         8.81         0.20         1.02        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        16.21        15.39        12.16        14.70 

  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
            10.09              0.20 
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
            10.09             98.76 
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
            10.09             12.18 
[1] "10.1 - 10.1 (10.1)" "0.2 - 98.8 (12.2)" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "C2ORF40 MUTATED" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A26D 
"C2ORF40 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "C2ORF40 MUTATED" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A26D 
"C2ORF40 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "C2ORF40 MUTATED" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A26D 
"C2ORF40 WILD-TYPE" 
[1] "Remove cluster labels:" "C2ORF40 MUTATED"       
clus
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
                1                84 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
D80V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  C2ORF40 MUTATED                    0             0
  C2ORF40 WILD-TYPE                 23             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  C2ORF40 MUTATED                                                                                          3
  C2ORF40 WILD-TYPE                                                                                       29
                   vv
clus                REGIONAL LYMPH NODE
  C2ORF40 MUTATED                     1
  C2ORF40 WILD-TYPE                 104
D80V3, multiclass
                                                                                          clus
vv                                                                                         C2ORF40 MUTATED
  DISTANT METASTASIS                                                                                     0
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               3
  REGIONAL LYMPH NODE                                                                                    1
                                                                                          clus
vv                                                                                         C2ORF40 WILD-TYPE
  DISTANT METASTASIS                                                                                      23
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                29
  REGIONAL LYMPH NODE                                                                                    104
D80V4, binary
                   cls
clus                  0   1
  C2ORF40 MUTATED     2   2
  C2ORF40 WILD-TYPE  57 100
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF40 MUTATED      2    2
  C2ORF40 WILD-TYPE   57  100
        clus
vv       C2ORF40 MUTATED C2ORF40 WILD-TYPE
  FEMALE               2                57
  MALE                 2               100
                   vv
clus                 M0  M1 M1A M1B M1C
  C2ORF40 MUTATED     3   0   0   0   0
  C2ORF40 WILD-TYPE 137   2   1   2   2
D80V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  C2ORF40 MUTATED    2  0   0   1  0   0   0   0  0  0
  C2ORF40 WILD-TYPE 86  2   7  14  1   4  10   5 15  1
D80V6, multiclass
D80V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  C2ORF40 MUTATED             0       1        0        0        1         0
  C2ORF40 WILD-TYPE           4      15       10       13       17         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  C2ORF40 MUTATED           0         0         0          0          0
  C2ORF40 WILD-TYPE         9         7         8          6         18
                   vv
clus                STAGE IIIC STAGE IV
  C2ORF40 MUTATED            0        0
  C2ORF40 WILD-TYPE         21        5
D80V8, multiclass
[1] "Remove cluster labels:" "C2ORF40 MUTATED"       
clus
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
                2               140 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GS        TCGA-EE-A2GT        TCGA-EE-A2GU 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7        TCGA-EE-A2M8 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME        TCGA-EE-A2MG 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ        TCGA-EE-A2MK 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2ML        TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MR        TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A3AE        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19J 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A19M        TCGA-ER-A19O        TCGA-ER-A1A1        TCGA-ER-A3ET 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FR-A3YO        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z4        TCGA-FS-A1ZA        TCGA-FS-A1ZB 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZC        TCGA-FS-A1ZD        TCGA-FS-A1ZE        TCGA-FS-A1ZF 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZK        TCGA-FS-A1ZM 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZP        TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZZ        TCGA-FW-A3I3        TCGA-FW-A3R5        TCGA-GN-A261 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 

Clustering(81) Variable = CXCR2 MUTATION ANALYSIS
D81V1, survival
                 sevent
clus2              0  1
  CXCR2 MUTATED    1  2
  CXCR2 WILD-TYPE 35 47
  CXCR2 MUTATED CXCR2 WILD-TYPE 
              3              82 
  CXCR2 MUTATED CXCR2 WILD-TYPE 
              2              47 
$`CXCR2 MUTATED`
TCGA-DA-A1HW TCGA-ER-A19M TCGA-FW-A3R5 
       35.80        28.64         1.02 

$`CXCR2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        4.01         2.86        48.79        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       38.63         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
        4.18        12.99        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  CXCR2 MUTATED CXCR2 WILD-TYPE 
           1.02            0.20 
  CXCR2 MUTATED CXCR2 WILD-TYPE 
          35.80           98.76 
  CXCR2 MUTATED CXCR2 WILD-TYPE 
         28.640          12.095 
[1] "1.0 - 35.8 (28.6)" "0.2 - 98.8 (12.1)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-GN-A26D 
"CXCR2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-GN-A26D 
"CXCR2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-GN-A26D 
"CXCR2 WILD-TYPE" 
[1] "hr=" "1.1"
D81V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  CXCR2 MUTATED                    2             0
  CXCR2 WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CXCR2 MUTATED                                                                                          3
  CXCR2 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  CXCR2 MUTATED                     6
  CXCR2 WILD-TYPE                  99
D81V3, multiclass
                                                                                          clus
vv                                                                                         CXCR2 MUTATED
  DISTANT METASTASIS                                                                                   2
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  6
                                                                                          clus
vv                                                                                         CXCR2 WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   99
D81V4, binary
                 cls
clus               0  1
  CXCR2 MUTATED    4  7
  CXCR2 WILD-TYPE 55 95
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CXCR2 MUTATED      4    7
  CXCR2 WILD-TYPE   55   95
        clus
vv       CXCR2 MUTATED CXCR2 WILD-TYPE
  FEMALE             4              55
  MALE               7              95
                 vv
clus               M0  M1 M1A M1B M1C
  CXCR2 MUTATED    11   0   0   0   0
  CXCR2 WILD-TYPE 129   2   1   2   2
D81V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CXCR2 MUTATED    8  0   0   1  1   0   0   1  0  0
  CXCR2 WILD-TYPE 80  2   7  14  0   4  10   4 15  1
D81V6, multiclass
D81V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CXCR2 MUTATED             1       1        0        1        3         0
  CXCR2 WILD-TYPE           3      15       10       12       15         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CXCR2 MUTATED           2         0         2          0          1
  CXCR2 WILD-TYPE         7         7         6          6         17
                 vv
clus              STAGE IIIC STAGE IV
  CXCR2 MUTATED            0        0
  CXCR2 WILD-TYPE         21        5
D81V8, multiclass

Clustering(82) Variable = RPTN MUTATION ANALYSIS
D82V1, survival
                sevent
clus2             0  1
  RPTN MUTATED    8  6
  RPTN WILD-TYPE 28 43
  RPTN MUTATED RPTN WILD-TYPE 
            14             71 
  RPTN MUTATED RPTN WILD-TYPE 
             6             43 
$`RPTN MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A2J6 TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-DA-A1HV TCGA-EE-A17X 
       32.55        10.26        30.87        15.25        48.79        11.57 
TCGA-EE-A181 TCGA-EE-A20F TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29S TCGA-EE-A2A6 
        1.12         5.13        38.63        27.12         9.99         8.94 
TCGA-FW-A3R5 TCGA-GN-A266 
        1.02        10.09 

$`RPTN WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 
       16.47        70.16        98.76        28.08        22.55         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF 
       21.14        11.41         6.35        45.70        13.32        24.00 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY 
        9.30         5.39         4.01         2.86        35.80        51.12 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       10.03        39.19        13.68         9.99        44.52        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       25.15         4.93        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       17.56        14.83         6.31         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H 
       36.07         8.81         7.96        37.97        11.15         4.41 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29V 
        1.08         9.47        12.03         8.12         8.84         2.43 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-ER-A19D 
        8.09        11.31        25.28        23.90         9.67         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        6.58         8.81         0.20        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        16.21        15.39        12.16        14.70 

  RPTN MUTATED RPTN WILD-TYPE 
          1.02           0.20 
  RPTN MUTATED RPTN WILD-TYPE 
         48.79          98.76 
  RPTN MUTATED RPTN WILD-TYPE 
        10.915         12.200 
[1] "1.0 - 48.8 (10.9)" "0.2 - 98.8 (12.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-GN-A26D 
"RPTN WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-GN-A26D 
"RPTN WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-GN-A26D 
"RPTN WILD-TYPE" 
[1] "hr=" "1.4"
D82V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  RPTN MUTATED                    3             1
  RPTN WILD-TYPE                 20             0
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  RPTN MUTATED                                                                                          2
  RPTN WILD-TYPE                                                                                       30
                vv
clus             REGIONAL LYMPH NODE
  RPTN MUTATED                    21
  RPTN WILD-TYPE                  84
D82V3, multiclass
                                                                                          clus
vv                                                                                         RPTN MUTATED
  DISTANT METASTASIS                                                                                  3
  PRIMARY TUMOR                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            2
  REGIONAL LYMPH NODE                                                                                21
                                                                                          clus
vv                                                                                         RPTN WILD-TYPE
  DISTANT METASTASIS                                                                                   20
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             30
  REGIONAL LYMPH NODE                                                                                  84
D82V4, binary
                cls
clus              0  1
  RPTN MUTATED    8 19
  RPTN WILD-TYPE 51 83
[1] "tbl2"
                cls
clus             [,1] [,2]
  RPTN MUTATED      8   19
  RPTN WILD-TYPE   51   83
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  FEMALE            8             51
  MALE             19             83
                vv
clus              M0  M1 M1A M1B M1C
  RPTN MUTATED    24   0   0   0   0
  RPTN WILD-TYPE 116   2   1   2   2
D82V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  RPTN MUTATED   20  0   0   1  1   1   1   0  0  0
  RPTN WILD-TYPE 68  2   7  14  0   3   9   5 15  1
D82V6, multiclass
D82V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RPTN MUTATED             2       3        5        2        4         2
  RPTN WILD-TYPE           2      13        5       11       14         5
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  RPTN MUTATED           2         0         1          0          2          0
  RPTN WILD-TYPE         7         7         7          6         16         21
                vv
clus             STAGE IV
  RPTN MUTATED          0
  RPTN WILD-TYPE        5
D82V8, multiclass

Clustering(83) Variable = PRIM2 MUTATION ANALYSIS
D83V1, survival
                 sevent
clus2              0  1
  PRIM2 MUTATED    3  3
  PRIM2 WILD-TYPE 33 46
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              6              79 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              3              46 
$`PRIM2 MUTATED`
TCGA-DA-A1HY TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A29D TCGA-ER-A19J TCGA-FW-A3R5 
       51.12        17.56        11.57        11.15         4.18         1.02 

$`PRIM2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 
        4.01         2.86        48.79        35.80        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17Z 
       22.36         6.64        19.36         7.00        14.83         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        1.12         1.35        12.20         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        8.81         7.96        37.97        38.63         4.41         1.08 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       27.12         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        2.43         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        8.94         3.52        11.11        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       78.44         6.58         8.81         0.20        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       31.33        84.72        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  PRIM2 MUTATED PRIM2 WILD-TYPE 
           1.02            0.20 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
          51.12           98.76 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
          11.36           12.20 
[1] "1.0 - 51.1 (11.4)" "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-GN-A26D 
"PRIM2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-GN-A26D 
"PRIM2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-GN-A26D 
"PRIM2 WILD-TYPE" 
[1] "hr=" "1"  
D83V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  PRIM2 MUTATED                    2             0
  PRIM2 WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PRIM2 MUTATED                                                                                          0
  PRIM2 WILD-TYPE                                                                                       32
                 vv
clus              REGIONAL LYMPH NODE
  PRIM2 MUTATED                     7
  PRIM2 WILD-TYPE                  98
D83V3, multiclass
                                                                                          clus
vv                                                                                         PRIM2 MUTATED
  DISTANT METASTASIS                                                                                   2
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                  7
                                                                                          clus
vv                                                                                         PRIM2 WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                   98
D83V4, binary
                 cls
clus               0  1
  PRIM2 MUTATED    1  8
  PRIM2 WILD-TYPE 58 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      1    8
  PRIM2 WILD-TYPE   58   94
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  FEMALE             1              58
  MALE               8              94
                 vv
clus               M0  M1 M1A M1B M1C
  PRIM2 MUTATED     8   1   0   0   0
  PRIM2 WILD-TYPE 132   1   1   2   2
D83V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PRIM2 MUTATED    4  0   0   1  1   0   0   0  3  0
  PRIM2 WILD-TYPE 84  2   7  14  0   4  10   5 12  1
D83V6, multiclass
D83V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PRIM2 MUTATED             2       0        1        0        0         0
  PRIM2 WILD-TYPE           2      16        9       13       18         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PRIM2 MUTATED           1         0         1          0          0
  PRIM2 WILD-TYPE         8         7         7          6         18
                 vv
clus              STAGE IIIC STAGE IV
  PRIM2 MUTATED            3        1
  PRIM2 WILD-TYPE         18        4
D83V8, multiclass

Clustering(84) Variable = MUM1L1 MUTATION ANALYSIS
D84V1, survival
                  sevent
clus2               0  1
  MUM1L1 MUTATED    6  3
  MUM1L1 WILD-TYPE 30 46
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
               9               76 
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
               3               46 
$`MUM1L1 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A3MV TCGA-DA-A3F5 TCGA-EE-A29H TCGA-EE-A29P TCGA-EE-A29R 
       70.16         5.39        17.56         4.41        12.03         8.84 
TCGA-EE-A29V TCGA-FW-A3R5 TCGA-GN-A268 
        2.43         1.02        15.39 

$`MUM1L1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
        8.38        21.14        11.41        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       45.70        13.32        24.00         9.30         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
        6.64        19.36         7.00        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        1.12         1.35        12.20         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L 
        8.81         7.96        37.97        11.15        38.63         1.08 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 
       27.12         9.47         8.12         9.99         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        8.81         0.20        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        12.16        14.70 

  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
            1.02             0.20 
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
           70.16            98.76 
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
           8.840           12.595 
[1] "1.0 - 70.2 (8.8)"  "0.2 - 98.8 (12.6)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
  "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-GN-A26D 
"MUM1L1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
  "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-GN-A26D 
"MUM1L1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
  "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-GN-A26D 
"MUM1L1 WILD-TYPE" 
[1] "hr=" "1.3"
D84V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  MUM1L1 MUTATED                    4             0
  MUM1L1 WILD-TYPE                 19             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  MUM1L1 MUTATED                                                                                          2
  MUM1L1 WILD-TYPE                                                                                       30
                  vv
clus               REGIONAL LYMPH NODE
  MUM1L1 MUTATED                    11
  MUM1L1 WILD-TYPE                  94
D84V3, multiclass
                                                                                          clus
vv                                                                                         MUM1L1 MUTATED
  DISTANT METASTASIS                                                                                    4
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              2
  REGIONAL LYMPH NODE                                                                                  11
                                                                                          clus
vv                                                                                         MUM1L1 WILD-TYPE
  DISTANT METASTASIS                                                                                     19
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               30
  REGIONAL LYMPH NODE                                                                                    94
D84V4, binary
                  cls
clus                0  1
  MUM1L1 MUTATED    6 11
  MUM1L1 WILD-TYPE 53 91
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MUM1L1 MUTATED      6   11
  MUM1L1 WILD-TYPE   53   91
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  FEMALE              6               53
  MALE               11               91
                  vv
clus                M0  M1 M1A M1B M1C
  MUM1L1 MUTATED    17   0   0   0   0
  MUM1L1 WILD-TYPE 123   2   1   2   2
D84V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  MUM1L1 MUTATED   10  0   0   4  1   1   0   0  1  0
  MUM1L1 WILD-TYPE 78  2   7  11  0   3  10   5 14  1
D84V6, multiclass
D84V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  MUM1L1 MUTATED             0       2        1        0        4         0
  MUM1L1 WILD-TYPE           4      14        9       13       14         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  MUM1L1 MUTATED           2         1         3          0          1
  MUM1L1 WILD-TYPE         7         6         5          6         17
                  vv
clus               STAGE IIIC STAGE IV
  MUM1L1 MUTATED            3        0
  MUM1L1 WILD-TYPE         18        5
D84V8, multiclass

Clustering(85) Variable = TLL1 MUTATION ANALYSIS
D85V1, survival
                sevent
clus2             0  1
  TLL1 MUTATED    8  5
  TLL1 WILD-TYPE 28 44
  TLL1 MUTATED TLL1 WILD-TYPE 
            13             72 
  TLL1 MUTATED TLL1 WILD-TYPE 
             5             44 
$`TLL1 MUTATED`
TCGA-D9-A3Z1 TCGA-DA-A1I5 TCGA-DA-A3F8 TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        4.01        44.52        14.83        11.15        38.63         4.41 
TCGA-EE-A29R TCGA-EE-A29V TCGA-EE-A2A6 TCGA-ER-A19F TCGA-FW-A3R5 TCGA-GN-A266 
        8.84         2.43         8.94        11.11         1.02        10.09 
TCGA-GN-A268 
       15.39 

$`TLL1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
       13.68         9.99        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z 
        6.64        19.36         7.00        17.56        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        1.12         1.35        12.20         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
        8.81         7.96        37.97         1.08        27.12         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       12.03         8.12         9.99         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
       23.90         9.67         3.52         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         0.20        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       24.85        31.33        84.72        16.21        12.16        14.70 

  TLL1 MUTATED TLL1 WILD-TYPE 
          1.02           0.20 
  TLL1 MUTATED TLL1 WILD-TYPE 
         44.52          98.76 
  TLL1 MUTATED TLL1 WILD-TYPE 
        10.090         13.155 
[1] "1.0 - 44.5 (10.1)" "0.2 - 98.8 (13.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "TLL1 MUTATED"   "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-GN-A26D 
"TLL1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "TLL1 MUTATED"   "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-GN-A26D 
"TLL1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "TLL1 MUTATED"   "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-GN-A26D 
"TLL1 WILD-TYPE" 
[1] "hr=" "1.1"
D85V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  TLL1 MUTATED                    6             0
  TLL1 WILD-TYPE                 17             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TLL1 MUTATED                                                                                          3
  TLL1 WILD-TYPE                                                                                       29
                vv
clus             REGIONAL LYMPH NODE
  TLL1 MUTATED                    24
  TLL1 WILD-TYPE                  81
D85V3, multiclass
                                                                                          clus
vv                                                                                         TLL1 MUTATED
  DISTANT METASTASIS                                                                                  6
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            3
  REGIONAL LYMPH NODE                                                                                24
                                                                                          clus
vv                                                                                         TLL1 WILD-TYPE
  DISTANT METASTASIS                                                                                   17
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             29
  REGIONAL LYMPH NODE                                                                                  81
D85V4, binary
                cls
clus              0  1
  TLL1 MUTATED   10 23
  TLL1 WILD-TYPE 49 79
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLL1 MUTATED     10   23
  TLL1 WILD-TYPE   49   79
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  FEMALE           10             49
  MALE             23             79
                vv
clus              M0  M1 M1A M1B M1C
  TLL1 MUTATED    31   0   0   0   1
  TLL1 WILD-TYPE 109   2   1   2   1
D85V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TLL1 MUTATED   21  0   1   5  1   0   1   1  1  1
  TLL1 WILD-TYPE 67  2   6  10  0   4   9   4 14  0
D85V6, multiclass
D85V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TLL1 MUTATED             1       4        5        0        5         0
  TLL1 WILD-TYPE           3      12        5       13       13         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  TLL1 MUTATED           3         1         1          1          4          4
  TLL1 WILD-TYPE         6         6         7          5         14         17
                vv
clus             STAGE IV
  TLL1 MUTATED          1
  TLL1 WILD-TYPE        4
D85V8, multiclass

Clustering(86) Variable = PRC1 MUTATION ANALYSIS
D86V1, survival
                sevent
clus2             0  1
  PRC1 MUTATED    1  4
  PRC1 WILD-TYPE 35 45
  PRC1 MUTATED PRC1 WILD-TYPE 
             5             80 
  PRC1 MUTATED PRC1 WILD-TYPE 
             4             45 
$`PRC1 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A2JK TCGA-DA-A1HV TCGA-EE-A183 TCGA-EE-A2A5 
       70.16         6.35        48.79        12.20         9.67 

$`PRC1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-D3-A3CC 
        8.38        21.14        11.41        30.87        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       35.80        51.12        10.03        39.19        13.68         9.99 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
       44.52        36.69        25.15         4.93        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        1.12         1.35         4.27        36.07         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        7.96        37.97        11.15        38.63         4.41         1.08 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       27.12         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 
        2.43         8.09        11.31        25.28        23.90         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 
       78.44         6.58         8.81         0.20         1.02        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       24.85        31.33        84.72        10.09        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  PRC1 MUTATED PRC1 WILD-TYPE 
          6.35           0.20 
  PRC1 MUTATED PRC1 WILD-TYPE 
         70.16          98.76 
  PRC1 MUTATED PRC1 WILD-TYPE 
        12.200         12.095 
[1] "6.3 - 70.2 (12.2)" "0.2 - 98.8 (12.1)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A26D 
"PRC1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A26D 
"PRC1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A26D 
"PRC1 WILD-TYPE" 
[1] "hr=" "1.1"
D86V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  PRC1 MUTATED                    1             0
  PRC1 WILD-TYPE                 22             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PRC1 MUTATED                                                                                          3
  PRC1 WILD-TYPE                                                                                       29
                vv
clus             REGIONAL LYMPH NODE
  PRC1 MUTATED                     5
  PRC1 WILD-TYPE                 100
D86V3, multiclass
                                                                                          clus
vv                                                                                         PRC1 MUTATED
  DISTANT METASTASIS                                                                                  1
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            3
  REGIONAL LYMPH NODE                                                                                 5
                                                                                          clus
vv                                                                                         PRC1 WILD-TYPE
  DISTANT METASTASIS                                                                                   22
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             29
  REGIONAL LYMPH NODE                                                                                 100
D86V4, binary
                cls
clus              0  1
  PRC1 MUTATED    2  7
  PRC1 WILD-TYPE 57 95
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRC1 MUTATED      2    7
  PRC1 WILD-TYPE   57   95
        clus
vv       PRC1 MUTATED PRC1 WILD-TYPE
  FEMALE            2             57
  MALE              7             95
                vv
clus              M0  M1 M1A M1B M1C
  PRC1 MUTATED     8   0   0   0   0
  PRC1 WILD-TYPE 132   2   1   2   2
D86V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PRC1 MUTATED    5  0   0   1  0   0   2   0  0  0
  PRC1 WILD-TYPE 83  2   7  14  1   4   8   5 15  1
D86V6, multiclass
D86V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PRC1 MUTATED             0       2        0        1        1         0
  PRC1 WILD-TYPE           4      14       10       12       17         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  PRC1 MUTATED           0         1         1          0          1          1
  PRC1 WILD-TYPE         9         6         7          6         17         20
                vv
clus             STAGE IV
  PRC1 MUTATED          0
  PRC1 WILD-TYPE        5
D86V8, multiclass

Clustering(87) Variable = GLRB MUTATION ANALYSIS
D87V1, survival
                sevent
clus2             0  1
  GLRB MUTATED    3  6
  GLRB WILD-TYPE 33 43
  GLRB MUTATED GLRB WILD-TYPE 
             9             76 
  GLRB MUTATED GLRB WILD-TYPE 
             6             43 
$`GLRB MUTATED`
TCGA-D3-A2J8 TCGA-D3-A2JF TCGA-EE-A182 TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A29E 
        8.38        30.87         1.35         8.81        11.15        38.63 
TCGA-EE-A29L TCGA-ER-A19D TCGA-FW-A3R5 
        1.08         3.52         1.02 

$`GLRB WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       10.26        21.14        11.41         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        6.31         1.12        12.20         4.27        36.07         5.13 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
        7.96        37.97         4.41        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J 
       25.28        23.90         9.67         8.94        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  GLRB MUTATED GLRB WILD-TYPE 
          1.02           0.20 
  GLRB MUTATED GLRB WILD-TYPE 
         38.63          98.76 
  GLRB MUTATED GLRB WILD-TYPE 
         8.380         13.155 
[1] "1.0 - 38.6 (8.4)"  "0.2 - 98.8 (13.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "GLRB MUTATED"   "GLRB MUTATED" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-GN-A26D 
"GLRB WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "GLRB MUTATED"   "GLRB MUTATED" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-GN-A26D 
"GLRB WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
  "GLRB MUTATED"   "GLRB MUTATED" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-GN-A26D 
"GLRB WILD-TYPE" 
[1] "hr=" "2"  
D87V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  GLRB MUTATED                    7             0
  GLRB WILD-TYPE                 16             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  GLRB MUTATED                                                                                          3
  GLRB WILD-TYPE                                                                                       29
                vv
clus             REGIONAL LYMPH NODE
  GLRB MUTATED                     9
  GLRB WILD-TYPE                  96
D87V3, multiclass
                                                                                          clus
vv                                                                                         GLRB MUTATED
  DISTANT METASTASIS                                                                                  7
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            3
  REGIONAL LYMPH NODE                                                                                 9
                                                                                          clus
vv                                                                                         GLRB WILD-TYPE
  DISTANT METASTASIS                                                                                   16
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             29
  REGIONAL LYMPH NODE                                                                                  96
D87V4, binary
                cls
clus              0  1
  GLRB MUTATED    6 13
  GLRB WILD-TYPE 53 89
[1] "tbl2"
                cls
clus             [,1] [,2]
  GLRB MUTATED      6   13
  GLRB WILD-TYPE   53   89
        clus
vv       GLRB MUTATED GLRB WILD-TYPE
  FEMALE            6             53
  MALE             13             89
                vv
clus              M0  M1 M1A M1B M1C
  GLRB MUTATED    19   0   0   0   0
  GLRB WILD-TYPE 121   2   1   2   2
D87V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  GLRB MUTATED   13  0   1   3  1   0   0   0  1  0
  GLRB WILD-TYPE 75  2   6  12  0   4  10   5 14  1
D87V6, multiclass
D87V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GLRB MUTATED             1       1        2        3        2         0
  GLRB WILD-TYPE           3      15        8       10       16         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  GLRB MUTATED           2         2         1          0          2          3
  GLRB WILD-TYPE         7         5         7          6         16         18
                vv
clus             STAGE IV
  GLRB MUTATED          0
  GLRB WILD-TYPE        5
D87V8, multiclass

Clustering(88) Variable = AREG MUTATION ANALYSIS
D88V1, survival
                sevent
clus2             0  1
  AREG MUTATED    2  1
  AREG WILD-TYPE 34 48
  AREG MUTATED AREG WILD-TYPE 
             3             82 
  AREG MUTATED AREG WILD-TYPE 
             1             48 
$`AREG MUTATED`
TCGA-D9-A3Z1 TCGA-ER-A19D TCGA-FW-A3R5 
        4.01         3.52         1.02 

$`AREG WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       38.63         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J 
       25.28        23.90         9.67         8.94        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  AREG MUTATED AREG WILD-TYPE 
          1.02           0.20 
  AREG MUTATED AREG WILD-TYPE 
          4.01          98.76 
  AREG MUTATED AREG WILD-TYPE 
         3.520         12.595 
[1] "1.0 - 4.0 (3.5)"   "0.2 - 98.8 (12.6)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"AREG WILD-TYPE" "AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE"   "AREG MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-GN-A26D 
"AREG WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"AREG WILD-TYPE" "AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE"   "AREG MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-GN-A26D 
"AREG WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"AREG WILD-TYPE" "AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE"   "AREG MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-GN-A26D 
"AREG WILD-TYPE" 
[1] "hr=" "9.8"
D88V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  AREG MUTATED                    0             0
  AREG WILD-TYPE                 23             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AREG MUTATED                                                                                          1
  AREG WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  AREG MUTATED                     5
  AREG WILD-TYPE                 100
D88V3, multiclass
                                                                                          clus
vv                                                                                         AREG MUTATED
  DISTANT METASTASIS                                                                                  0
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                 5
                                                                                          clus
vv                                                                                         AREG WILD-TYPE
  DISTANT METASTASIS                                                                                   23
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                 100
D88V4, binary
                cls
clus              0  1
  AREG MUTATED    3  3
  AREG WILD-TYPE 56 99
[1] "tbl2"
                cls
clus             [,1] [,2]
  AREG MUTATED      3    3
  AREG WILD-TYPE   56   99
        clus
vv       AREG MUTATED AREG WILD-TYPE
  FEMALE            3             56
  MALE              3             99
                vv
clus              M0  M1 M1A M1B M1C
  AREG MUTATED     5   0   0   0   0
  AREG WILD-TYPE 135   2   1   2   2
D88V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AREG MUTATED    3  0   0   0  1   0   0   0  1  0
  AREG WILD-TYPE 85  2   7  15  0   4  10   5 14  1
D88V6, multiclass
D88V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AREG MUTATED             0       0        1        2        0         0
  AREG WILD-TYPE           4      16        9       11       18         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AREG MUTATED           0         0         1          0          0          1
  AREG WILD-TYPE         9         7         7          6         18         20
                vv
clus             STAGE IV
  AREG MUTATED          0
  AREG WILD-TYPE        5
D88V8, multiclass

Clustering(89) Variable = SPINK13 MUTATION ANALYSIS
D89V1, survival
                   sevent
clus2                0  1
  SPINK13 MUTATED    1  2
  SPINK13 WILD-TYPE 35 47
  SPINK13 MUTATED SPINK13 WILD-TYPE 
                3                82 
  SPINK13 MUTATED SPINK13 WILD-TYPE 
                2                47 
$`SPINK13 MUTATED`
TCGA-D3-A2JD TCGA-EE-A29D TCGA-FW-A3R5 
       11.41        11.15         1.02 

$`SPINK13 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E 
       36.07         5.13         8.81         7.96        37.97        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  SPINK13 MUTATED SPINK13 WILD-TYPE 
             1.02              0.20 
  SPINK13 MUTATED SPINK13 WILD-TYPE 
            11.41             98.76 
  SPINK13 MUTATED SPINK13 WILD-TYPE 
           11.150            12.595 
[1] "1.0 - 11.4 (11.2)" "0.2 - 98.8 (12.6)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SPINK13 WILD-TYPE"   "SPINK13 MUTATED" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "SPINK13 MUTATED" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE"   "SPINK13 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-GN-A26D 
"SPINK13 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SPINK13 WILD-TYPE"   "SPINK13 MUTATED" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "SPINK13 MUTATED" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE"   "SPINK13 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-GN-A26D 
"SPINK13 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SPINK13 WILD-TYPE"   "SPINK13 MUTATED" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "SPINK13 MUTATED" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE"   "SPINK13 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-GN-A26D 
"SPINK13 WILD-TYPE" 
[1] "hr=" "2.4"
D89V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  SPINK13 MUTATED                    0             0
  SPINK13 WILD-TYPE                 23             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  SPINK13 MUTATED                                                                                          1
  SPINK13 WILD-TYPE                                                                                       31
                   vv
clus                REGIONAL LYMPH NODE
  SPINK13 MUTATED                     5
  SPINK13 WILD-TYPE                 100
D89V3, multiclass
                                                                                          clus
vv                                                                                         SPINK13 MUTATED
  DISTANT METASTASIS                                                                                     0
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               1
  REGIONAL LYMPH NODE                                                                                    5
                                                                                          clus
vv                                                                                         SPINK13 WILD-TYPE
  DISTANT METASTASIS                                                                                      23
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                31
  REGIONAL LYMPH NODE                                                                                    100
D89V4, binary
                   cls
clus                 0  1
  SPINK13 MUTATED    1  5
  SPINK13 WILD-TYPE 58 97
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPINK13 MUTATED      1    5
  SPINK13 WILD-TYPE   58   97
        clus
vv       SPINK13 MUTATED SPINK13 WILD-TYPE
  FEMALE               1                58
  MALE                 5                97
                   vv
clus                 M0  M1 M1A M1B M1C
  SPINK13 MUTATED     6   0   0   0   0
  SPINK13 WILD-TYPE 134   2   1   2   2
D89V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  SPINK13 MUTATED    2  0   0   3  1   0   0   0  0  0
  SPINK13 WILD-TYPE 86  2   7  12  0   4  10   5 15  1
D89V6, multiclass
D89V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SPINK13 MUTATED             0       1        0        0        1         0
  SPINK13 WILD-TYPE           4      15       10       13       17         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SPINK13 MUTATED           0         0         1          0          0
  SPINK13 WILD-TYPE         9         7         7          6         18
                   vv
clus                STAGE IIIC STAGE IV
  SPINK13 MUTATED            2        0
  SPINK13 WILD-TYPE         19        5
D89V8, multiclass

Clustering(90) Variable = ACD MUTATION ANALYSIS
D90V1, survival
               sevent
clus2            0  1
  ACD MUTATED    2  1
  ACD WILD-TYPE 34 48
  ACD MUTATED ACD WILD-TYPE 
            3            82 
  ACD MUTATED ACD WILD-TYPE 
            1            48 
$`ACD MUTATED`
TCGA-D3-A1Q5 TCGA-EE-A29M TCGA-FW-A3R5 
       32.55        27.12         1.02 

$`ACD WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        70.16        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
        8.38        21.14        11.41        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       38.63         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  ACD MUTATED ACD WILD-TYPE 
         1.02          0.20 
  ACD MUTATED ACD WILD-TYPE 
        32.55         98.76 
  ACD MUTATED ACD WILD-TYPE 
       27.120        12.095 
[1] "1.0 - 32.5 (27.1)" "0.2 - 98.8 (12.1)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"ACD WILD-TYPE"   "ACD MUTATED" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"ACD WILD-TYPE" "ACD WILD-TYPE"   "ACD MUTATED" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "ACD MUTATED" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"ACD WILD-TYPE"   "ACD MUTATED" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"ACD WILD-TYPE" "ACD WILD-TYPE"   "ACD MUTATED" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "ACD MUTATED" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"ACD WILD-TYPE"   "ACD MUTATED" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5    TCGA-DA-A1I7    TCGA-DA-A1I8 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC    TCGA-DA-A3F2    TCGA-DA-A3F3 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X    TCGA-EE-A17Z    TCGA-EE-A181 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B    TCGA-EE-A20F 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M    TCGA-EE-A29N    TCGA-EE-A29P 
"ACD WILD-TYPE" "ACD WILD-TYPE"   "ACD MUTATED" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V    TCGA-EE-A29X 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19M 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET    TCGA-FS-A1ZR    TCGA-FW-A3I3 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265 
  "ACD MUTATED" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
   TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" "ACD WILD-TYPE" 
[1] "hr=" "2.1"
D90V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  ACD MUTATED                    0             1
  ACD WILD-TYPE                 23             0
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ACD MUTATED                                                                                          0
  ACD WILD-TYPE                                                                                       32
               vv
clus            REGIONAL LYMPH NODE
  ACD MUTATED                     6
  ACD WILD-TYPE                  99
D90V3, multiclass
                                                                                          clus
vv                                                                                         ACD MUTATED
  DISTANT METASTASIS                                                                                 0
  PRIMARY TUMOR                                                                                      1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           0
  REGIONAL LYMPH NODE                                                                                6
                                                                                          clus
vv                                                                                         ACD WILD-TYPE
  DISTANT METASTASIS                                                                                  23
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            32
  REGIONAL LYMPH NODE                                                                                 99
D90V4, binary
               cls
clus             0  1
  ACD MUTATED    1  6
  ACD WILD-TYPE 58 96
[1] "tbl2"
               cls
clus            [,1] [,2]
  ACD MUTATED      1    6
  ACD WILD-TYPE   58   96
        clus
vv       ACD MUTATED ACD WILD-TYPE
  FEMALE           1            58
  MALE             6            96
               vv
clus             M0  M1 M1A M1B M1C
  ACD MUTATED     7   0   0   0   0
  ACD WILD-TYPE 133   2   1   2   2
D90V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  ACD MUTATED    6  0   0   0  1   0   0   0  0  0
  ACD WILD-TYPE 82  2   7  15  0   4  10   5 15  1
D90V6, multiclass
D90V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ACD MUTATED             1       2        1        1        0         1
  ACD WILD-TYPE           3      14        9       12       18         6
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  ACD MUTATED           0         0         1          0          0          0
  ACD WILD-TYPE         9         7         7          6         18         21
               vv
clus            STAGE IV
  ACD MUTATED          0
  ACD WILD-TYPE        5
D90V8, multiclass

Clustering(91) Variable = C2ORF39 MUTATION ANALYSIS
D91V1, survival
                   sevent
clus2                0  1
  C2ORF39 MUTATED    1  3
  C2ORF39 WILD-TYPE 35 46
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                4                81 
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                3                46 
$`C2ORF39 MUTATED`
TCGA-ER-A19J TCGA-FW-A3R5 TCGA-GN-A266 TCGA-GN-A268 
        4.18         1.02        10.09        15.39 

$`C2ORF39 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       11.15        38.63         4.41         1.08        27.12         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
       12.03         8.12         8.84         9.99         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
       11.31        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       11.11        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        8.81         0.20        15.35        24.85        31.33        84.72 
TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        12.16        14.70 

  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
             1.02              0.20 
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
            15.39             98.76 
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
            7.135            12.200 
[1] "1.0 - 15.4 (7.1)"  "0.2 - 98.8 (12.2)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-GN-A26D 
"C2ORF39 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-GN-A26D 
"C2ORF39 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-GN-A26D 
"C2ORF39 WILD-TYPE" 
[1] "hr=" "2.8"
D91V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  C2ORF39 MUTATED                    1             0
  C2ORF39 WILD-TYPE                 22             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  C2ORF39 MUTATED                                                                                          1
  C2ORF39 WILD-TYPE                                                                                       31
                   vv
clus                REGIONAL LYMPH NODE
  C2ORF39 MUTATED                     6
  C2ORF39 WILD-TYPE                  99
D91V3, multiclass
                                                                                          clus
vv                                                                                         C2ORF39 MUTATED
  DISTANT METASTASIS                                                                                     1
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               1
  REGIONAL LYMPH NODE                                                                                    6
                                                                                          clus
vv                                                                                         C2ORF39 WILD-TYPE
  DISTANT METASTASIS                                                                                      22
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                31
  REGIONAL LYMPH NODE                                                                                     99
D91V4, binary
                   cls
clus                 0  1
  C2ORF39 MUTATED    2  6
  C2ORF39 WILD-TYPE 57 96
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF39 MUTATED      2    6
  C2ORF39 WILD-TYPE   57   96
        clus
vv       C2ORF39 MUTATED C2ORF39 WILD-TYPE
  FEMALE               2                57
  MALE                 6                96
                   vv
clus                 M0  M1 M1A M1B M1C
  C2ORF39 MUTATED     6   1   0   0   0
  C2ORF39 WILD-TYPE 134   1   1   2   2
D91V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  C2ORF39 MUTATED    5  0   0   0  1   0   0   0  1  0
  C2ORF39 WILD-TYPE 83  2   7  15  0   4  10   5 14  1
D91V6, multiclass
D91V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  C2ORF39 MUTATED             0       0        1        1        2         0
  C2ORF39 WILD-TYPE           4      16        9       12       16         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  C2ORF39 MUTATED           1         0         1          0          0
  C2ORF39 WILD-TYPE         8         7         7          6         18
                   vv
clus                STAGE IIIC STAGE IV
  C2ORF39 MUTATED            0        1
  C2ORF39 WILD-TYPE         21        4
D91V8, multiclass

Clustering(92) Variable = RERG MUTATION ANALYSIS
D92V1, survival
                sevent
clus2             0  1
  RERG MUTATED    2  2
  RERG WILD-TYPE 34 47
  RERG MUTATED RERG WILD-TYPE 
             4             81 
  RERG MUTATED RERG WILD-TYPE 
             2             47 
$`RERG MUTATED`
TCGA-DA-A1HV TCGA-EE-A181 TCGA-FW-A3R5 TCGA-GN-A266 
       48.79         1.12         1.02        10.09 

$`RERG WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        4.01         2.86        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        5.13         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
        0.20        15.35        24.85        31.33        84.72        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  RERG MUTATED RERG WILD-TYPE 
          1.02           0.20 
  RERG MUTATED RERG WILD-TYPE 
         48.79          98.76 
  RERG MUTATED RERG WILD-TYPE 
         5.605         12.200 
[1] "1.0 - 48.8 (5.6)"  "0.2 - 98.8 (12.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "RERG MUTATED" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "RERG MUTATED" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-GN-A26D 
"RERG WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "RERG MUTATED" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "RERG MUTATED" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-GN-A26D 
"RERG WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1HV     TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0 
  "RERG MUTATED" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1I1     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1I7     TCGA-DA-A1I8     TCGA-DA-A1IA     TCGA-DA-A1IB 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3     TCGA-DA-A3F5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z     TCGA-EE-A181 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" 
    TCGA-EE-A182     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A20H     TCGA-EE-A29A     TCGA-EE-A29C 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29D     TCGA-EE-A29E     TCGA-EE-A29H     TCGA-EE-A29L 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29M     TCGA-EE-A29N     TCGA-EE-A29P     TCGA-EE-A29Q 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29V     TCGA-EE-A29X 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3I3     TCGA-FW-A3R5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" 
    TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A 
  "RERG MUTATED" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-GN-A26D 
"RERG WILD-TYPE" 
[1] "hr=" "1.3"
D92V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  RERG MUTATED                    0             0
  RERG WILD-TYPE                 23             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  RERG MUTATED                                                                                          1
  RERG WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  RERG MUTATED                     8
  RERG WILD-TYPE                  97
D92V3, multiclass
                                                                                          clus
vv                                                                                         RERG MUTATED
  DISTANT METASTASIS                                                                                  0
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                 8
                                                                                          clus
vv                                                                                         RERG WILD-TYPE
  DISTANT METASTASIS                                                                                   23
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  97
D92V4, binary
                cls
clus              0  1
  RERG MUTATED    2  7
  RERG WILD-TYPE 57 95
[1] "tbl2"
                cls
clus             [,1] [,2]
  RERG MUTATED      2    7
  RERG WILD-TYPE   57   95
        clus
vv       RERG MUTATED RERG WILD-TYPE
  FEMALE            2             57
  MALE              7             95
                vv
clus              M0  M1 M1A M1B M1C
  RERG MUTATED     7   0   0   0   0
  RERG WILD-TYPE 133   2   1   2   2
D92V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  RERG MUTATED    4  0   0   0  1   1   1   0  0  0
  RERG WILD-TYPE 84  2   7  15  0   3   9   5 15  1
D92V6, multiclass
D92V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RERG MUTATED             0       1        0        0        3         0
  RERG WILD-TYPE           4      15       10       13       15         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  RERG MUTATED           0         0         1          0          1          0
  RERG WILD-TYPE         9         7         7          6         17         21
                vv
clus             STAGE IV
  RERG MUTATED          0
  RERG WILD-TYPE        5
D92V8, multiclass

Clustering(93) Variable = TUBB8 MUTATION ANALYSIS
D93V1, survival
                 sevent
clus2              0  1
  TUBB8 MUTATED    1  2
  TUBB8 WILD-TYPE 35 47
  TUBB8 MUTATED TUBB8 WILD-TYPE 
              3              82 
  TUBB8 MUTATED TUBB8 WILD-TYPE 
              2              47 
$`TUBB8 MUTATED`
TCGA-DA-A1IA TCGA-ER-A19L TCGA-FW-A3R5 
        4.93        12.99         1.02 

$`TUBB8 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       38.63         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.12         8.84         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
        4.18        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  TUBB8 MUTATED TUBB8 WILD-TYPE 
           1.02            0.20 
  TUBB8 MUTATED TUBB8 WILD-TYPE 
          12.99           98.76 
  TUBB8 MUTATED TUBB8 WILD-TYPE 
           4.93           12.18 
[1] "1.0 - 13.0 (4.9)"  "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
  "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE"   "TUBB8 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-GN-A26D 
"TUBB8 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
  "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE"   "TUBB8 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-GN-A26D 
"TUBB8 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
  "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE"   "TUBB8 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-GN-A26D 
"TUBB8 WILD-TYPE" 
[1] "hr=" "3.2"
D93V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  TUBB8 MUTATED                    1             0
  TUBB8 WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TUBB8 MUTATED                                                                                          1
  TUBB8 WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  TUBB8 MUTATED                     6
  TUBB8 WILD-TYPE                  99
D93V3, multiclass
                                                                                          clus
vv                                                                                         TUBB8 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  6
                                                                                          clus
vv                                                                                         TUBB8 WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   99
D93V4, binary
                 cls
clus               0  1
  TUBB8 MUTATED    2  6
  TUBB8 WILD-TYPE 57 96
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUBB8 MUTATED      2    6
  TUBB8 WILD-TYPE   57   96
        clus
vv       TUBB8 MUTATED TUBB8 WILD-TYPE
  FEMALE             2              57
  MALE               6              96
                 vv
clus               M0  M1 M1A M1B M1C
  TUBB8 MUTATED     6   0   0   0   0
  TUBB8 WILD-TYPE 134   2   1   2   2
D93V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TUBB8 MUTATED    4  0   0   1  1   0   0   0  0  0
  TUBB8 WILD-TYPE 84  2   7  14  0   4  10   5 15  1
D93V6, multiclass
D93V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TUBB8 MUTATED             0       0        0        1        2         1
  TUBB8 WILD-TYPE           4      16       10       12       16         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TUBB8 MUTATED           0         0         1          0          1
  TUBB8 WILD-TYPE         9         7         7          6         17
                 vv
clus              STAGE IIIC STAGE IV
  TUBB8 MUTATED            0        0
  TUBB8 WILD-TYPE         21        5
D93V8, multiclass

Clustering(94) Variable = AGXT2 MUTATION ANALYSIS
D94V1, survival
                 sevent
clus2              0  1
  AGXT2 MUTATED    3  4
  AGXT2 WILD-TYPE 33 45
  AGXT2 MUTATED AGXT2 WILD-TYPE 
              7              78 
  AGXT2 MUTATED AGXT2 WILD-TYPE 
              4              45 
$`AGXT2 MUTATED`
TCGA-DA-A1HW TCGA-EE-A183 TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A2A5 TCGA-FW-A3R5 
       35.80        12.20         8.84         9.99         9.67         1.02 
TCGA-GN-A266 
       10.09 

$`AGXT2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        4.01         2.86        48.79        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.12         1.35         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        5.13         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 
        2.43         8.09        11.31        25.28        23.90         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       78.44         6.58         8.81         0.20        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        16.21        15.39        12.16        14.70 

  AGXT2 MUTATED AGXT2 WILD-TYPE 
           1.02            0.20 
  AGXT2 MUTATED AGXT2 WILD-TYPE 
          35.80           98.76 
  AGXT2 MUTATED AGXT2 WILD-TYPE 
          9.990          13.155 
[1] "1.0 - 35.8 (10.0)" "0.2 - 98.8 (13.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"AGXT2 WILD-TYPE"   "AGXT2 MUTATED" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"AGXT2 WILD-TYPE"   "AGXT2 MUTATED" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
  "AGXT2 MUTATED"   "AGXT2 MUTATED" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE"   "AGXT2 MUTATED" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE"   "AGXT2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "AGXT2 MUTATED" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-GN-A26D 
"AGXT2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"AGXT2 WILD-TYPE"   "AGXT2 MUTATED" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"AGXT2 WILD-TYPE"   "AGXT2 MUTATED" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
  "AGXT2 MUTATED"   "AGXT2 MUTATED" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE"   "AGXT2 MUTATED" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE"   "AGXT2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "AGXT2 MUTATED" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-GN-A26D 
"AGXT2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"AGXT2 WILD-TYPE"   "AGXT2 MUTATED" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"AGXT2 WILD-TYPE"   "AGXT2 MUTATED" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
  "AGXT2 MUTATED"   "AGXT2 MUTATED" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE"   "AGXT2 MUTATED" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE"   "AGXT2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "AGXT2 MUTATED" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" "AGXT2 WILD-TYPE" 
     TCGA-GN-A26D 
"AGXT2 WILD-TYPE" 
[1] "hr=" "1.4"
D94V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  AGXT2 MUTATED                    5             0
  AGXT2 WILD-TYPE                 18             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AGXT2 MUTATED                                                                                          3
  AGXT2 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  AGXT2 MUTATED                     8
  AGXT2 WILD-TYPE                  97
D94V3, multiclass
                                                                                          clus
vv                                                                                         AGXT2 MUTATED
  DISTANT METASTASIS                                                                                   5
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  8
                                                                                          clus
vv                                                                                         AGXT2 WILD-TYPE
  DISTANT METASTASIS                                                                                    18
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   97
D94V4, binary
                 cls
clus               0  1
  AGXT2 MUTATED    6 10
  AGXT2 WILD-TYPE 53 92
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AGXT2 MUTATED      6   10
  AGXT2 WILD-TYPE   53   92
        clus
vv       AGXT2 MUTATED AGXT2 WILD-TYPE
  FEMALE             6              53
  MALE              10              92
                 vv
clus               M0  M1 M1A M1B M1C
  AGXT2 MUTATED    14   0   0   0   0
  AGXT2 WILD-TYPE 126   2   1   2   2
D94V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AGXT2 MUTATED   10  0   1   2  1   0   0   0  0  0
  AGXT2 WILD-TYPE 78  2   6  13  0   4  10   5 15  1
D94V6, multiclass
D94V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AGXT2 MUTATED             2       2        1        1        1         1
  AGXT2 WILD-TYPE           2      14        9       12       17         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  AGXT2 MUTATED           1         1         1          1          1
  AGXT2 WILD-TYPE         8         6         7          5         17
                 vv
clus              STAGE IIIC STAGE IV
  AGXT2 MUTATED            1        0
  AGXT2 WILD-TYPE         20        5
D94V8, multiclass

Clustering(95) Variable = C9 MUTATION ANALYSIS
D95V1, survival
              sevent
clus2           0  1
  C9 MUTATED    2  5
  C9 WILD-TYPE 34 44
  C9 MUTATED C9 WILD-TYPE 
           7           78 
  C9 MUTATED C9 WILD-TYPE 
           5           44 
$`C9 MUTATED`
TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A20H TCGA-EE-A2A0 TCGA-ER-A19D TCGA-FW-A3R5 
       14.83         1.12         8.81        11.31         3.52         1.02 
TCGA-GN-A266 
       10.09 

$`C9 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        5.13         7.96        37.97        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        1.08        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        9.99         2.43         8.09        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        8.94        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       78.44         6.58         8.81         0.20        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        16.21        15.39        12.16        14.70 

  C9 MUTATED C9 WILD-TYPE 
        1.02         0.20 
  C9 MUTATED C9 WILD-TYPE 
       14.83        98.76 
  C9 MUTATED C9 WILD-TYPE 
       8.810       13.155 
[1] "1.0 - 14.8 (8.8)"  "0.2 - 98.8 (13.2)"
  TCGA-D3-A1Q1   TCGA-D3-A1Q5   TCGA-D3-A1Q6   TCGA-D3-A1Q7   TCGA-D3-A1Q8 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-D3-A1Q9   TCGA-D3-A2J6   TCGA-D3-A2J8   TCGA-D3-A2J9   TCGA-D3-A2JD 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-D3-A2JF   TCGA-D3-A2JK   TCGA-D3-A3C6   TCGA-D3-A3CC   TCGA-D3-A3CE 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-D3-A3CF   TCGA-D3-A3MO   TCGA-D3-A3MV   TCGA-D9-A3Z1   TCGA-D9-A3Z3 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-DA-A1HV   TCGA-DA-A1HW   TCGA-DA-A1HY   TCGA-DA-A1I0   TCGA-DA-A1I1 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-DA-A1I2   TCGA-DA-A1I4   TCGA-DA-A1I5   TCGA-DA-A1I7   TCGA-DA-A1I8 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-DA-A1IA   TCGA-DA-A1IB   TCGA-DA-A1IC   TCGA-DA-A3F2   TCGA-DA-A3F3 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-DA-A3F5   TCGA-DA-A3F8   TCGA-EE-A17X   TCGA-EE-A17Z   TCGA-EE-A181 
"C9 WILD-TYPE"   "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE"   "C9 MUTATED" 
  TCGA-EE-A182   TCGA-EE-A183   TCGA-EE-A185   TCGA-EE-A20B   TCGA-EE-A20F 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-EE-A20H   TCGA-EE-A29A   TCGA-EE-A29C   TCGA-EE-A29D   TCGA-EE-A29E 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-EE-A29H   TCGA-EE-A29L   TCGA-EE-A29M   TCGA-EE-A29N   TCGA-EE-A29P 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-EE-A29Q   TCGA-EE-A29R   TCGA-EE-A29S   TCGA-EE-A29V   TCGA-EE-A29X 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-EE-A2A0   TCGA-EE-A2A1   TCGA-EE-A2A2   TCGA-EE-A2A5   TCGA-EE-A2A6 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-ER-A19D   TCGA-ER-A19F   TCGA-ER-A19J   TCGA-ER-A19L   TCGA-ER-A19M 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-ER-A19N   TCGA-ER-A1A1   TCGA-ER-A3ET   TCGA-FS-A1ZR   TCGA-FW-A3I3 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-FW-A3R5   TCGA-GN-A261   TCGA-GN-A262   TCGA-GN-A264   TCGA-GN-A265 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-GN-A266   TCGA-GN-A267   TCGA-GN-A268   TCGA-GN-A26A   TCGA-GN-A26D 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-D3-A1Q1   TCGA-D3-A1Q5   TCGA-D3-A1Q6   TCGA-D3-A1Q7   TCGA-D3-A1Q8 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-D3-A1Q9   TCGA-D3-A2J6   TCGA-D3-A2J8   TCGA-D3-A2J9   TCGA-D3-A2JD 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-D3-A2JF   TCGA-D3-A2JK   TCGA-D3-A3C6   TCGA-D3-A3CC   TCGA-D3-A3CE 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-D3-A3CF   TCGA-D3-A3MO   TCGA-D3-A3MV   TCGA-D9-A3Z1   TCGA-D9-A3Z3 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-DA-A1HV   TCGA-DA-A1HW   TCGA-DA-A1HY   TCGA-DA-A1I0   TCGA-DA-A1I1 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-DA-A1I2   TCGA-DA-A1I4   TCGA-DA-A1I5   TCGA-DA-A1I7   TCGA-DA-A1I8 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-DA-A1IA   TCGA-DA-A1IB   TCGA-DA-A1IC   TCGA-DA-A3F2   TCGA-DA-A3F3 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-DA-A3F5   TCGA-DA-A3F8   TCGA-EE-A17X   TCGA-EE-A17Z   TCGA-EE-A181 
"C9 WILD-TYPE"   "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE"   "C9 MUTATED" 
  TCGA-EE-A182   TCGA-EE-A183   TCGA-EE-A185   TCGA-EE-A20B   TCGA-EE-A20F 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-EE-A20H   TCGA-EE-A29A   TCGA-EE-A29C   TCGA-EE-A29D   TCGA-EE-A29E 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-EE-A29H   TCGA-EE-A29L   TCGA-EE-A29M   TCGA-EE-A29N   TCGA-EE-A29P 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-EE-A29Q   TCGA-EE-A29R   TCGA-EE-A29S   TCGA-EE-A29V   TCGA-EE-A29X 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-EE-A2A0   TCGA-EE-A2A1   TCGA-EE-A2A2   TCGA-EE-A2A5   TCGA-EE-A2A6 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-ER-A19D   TCGA-ER-A19F   TCGA-ER-A19J   TCGA-ER-A19L   TCGA-ER-A19M 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-ER-A19N   TCGA-ER-A1A1   TCGA-ER-A3ET   TCGA-FS-A1ZR   TCGA-FW-A3I3 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-FW-A3R5   TCGA-GN-A261   TCGA-GN-A262   TCGA-GN-A264   TCGA-GN-A265 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-GN-A266   TCGA-GN-A267   TCGA-GN-A268   TCGA-GN-A26A   TCGA-GN-A26D 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-D3-A1Q1   TCGA-D3-A1Q5   TCGA-D3-A1Q6   TCGA-D3-A1Q7   TCGA-D3-A1Q8 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-D3-A1Q9   TCGA-D3-A2J6   TCGA-D3-A2J8   TCGA-D3-A2J9   TCGA-D3-A2JD 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-D3-A2JF   TCGA-D3-A2JK   TCGA-D3-A3C6   TCGA-D3-A3CC   TCGA-D3-A3CE 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-D3-A3CF   TCGA-D3-A3MO   TCGA-D3-A3MV   TCGA-D9-A3Z1   TCGA-D9-A3Z3 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-DA-A1HV   TCGA-DA-A1HW   TCGA-DA-A1HY   TCGA-DA-A1I0   TCGA-DA-A1I1 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-DA-A1I2   TCGA-DA-A1I4   TCGA-DA-A1I5   TCGA-DA-A1I7   TCGA-DA-A1I8 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-DA-A1IA   TCGA-DA-A1IB   TCGA-DA-A1IC   TCGA-DA-A3F2   TCGA-DA-A3F3 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-DA-A3F5   TCGA-DA-A3F8   TCGA-EE-A17X   TCGA-EE-A17Z   TCGA-EE-A181 
"C9 WILD-TYPE"   "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE"   "C9 MUTATED" 
  TCGA-EE-A182   TCGA-EE-A183   TCGA-EE-A185   TCGA-EE-A20B   TCGA-EE-A20F 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-EE-A20H   TCGA-EE-A29A   TCGA-EE-A29C   TCGA-EE-A29D   TCGA-EE-A29E 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-EE-A29H   TCGA-EE-A29L   TCGA-EE-A29M   TCGA-EE-A29N   TCGA-EE-A29P 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-EE-A29Q   TCGA-EE-A29R   TCGA-EE-A29S   TCGA-EE-A29V   TCGA-EE-A29X 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-EE-A2A0   TCGA-EE-A2A1   TCGA-EE-A2A2   TCGA-EE-A2A5   TCGA-EE-A2A6 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-ER-A19D   TCGA-ER-A19F   TCGA-ER-A19J   TCGA-ER-A19L   TCGA-ER-A19M 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-ER-A19N   TCGA-ER-A1A1   TCGA-ER-A3ET   TCGA-FS-A1ZR   TCGA-FW-A3I3 
"C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-FW-A3R5   TCGA-GN-A261   TCGA-GN-A262   TCGA-GN-A264   TCGA-GN-A265 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
  TCGA-GN-A266   TCGA-GN-A267   TCGA-GN-A268   TCGA-GN-A26A   TCGA-GN-A26D 
  "C9 MUTATED" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" "C9 WILD-TYPE" 
[1] "hr=" "3.3"
D95V2, continuous
              vv
clus           DISTANT METASTASIS PRIMARY TUMOR
  C9 MUTATED                    1             0
  C9 WILD-TYPE                 22             1
              vv
clus           REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  C9 MUTATED                                                                                          3
  C9 WILD-TYPE                                                                                       29
              vv
clus           REGIONAL LYMPH NODE
  C9 MUTATED                     8
  C9 WILD-TYPE                  97
D95V3, multiclass
                                                                                          clus
vv                                                                                         C9 MUTATED
  DISTANT METASTASIS                                                                                1
  PRIMARY TUMOR                                                                                     0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)          3
  REGIONAL LYMPH NODE                                                                               8
                                                                                          clus
vv                                                                                         C9 WILD-TYPE
  DISTANT METASTASIS                                                                                 22
  PRIMARY TUMOR                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           29
  REGIONAL LYMPH NODE                                                                                97
D95V4, binary
              cls
clus            0  1
  C9 MUTATED    5  7
  C9 WILD-TYPE 54 95
[1] "tbl2"
              cls
clus           [,1] [,2]
  C9 MUTATED      5    7
  C9 WILD-TYPE   54   95
        clus
vv       C9 MUTATED C9 WILD-TYPE
  FEMALE          5           54
  MALE            7           95
              vv
clus            M0  M1 M1A M1B M1C
  C9 MUTATED    10   0   0   0   0
  C9 WILD-TYPE 130   2   1   2   2
D95V5, multiclass
              vv
clus           N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  C9 MUTATED    8  0   0   0  1   0   1   0  0  0
  C9 WILD-TYPE 80  2   7  15  0   4   9   5 15  1
D95V6, multiclass
D95V7, continuous
              vv
clus           I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  C9 MUTATED             0       2        1        1        2         1
  C9 WILD-TYPE           4      14        9       12       16         6
              vv
clus           STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  C9 MUTATED           0         1         1          0          1          0
  C9 WILD-TYPE         9         6         7          6         17         21
              vv
clus           STAGE IV
  C9 MUTATED          0
  C9 WILD-TYPE        5
D95V8, multiclass

Clustering(96) Variable = CX3CL1 MUTATION ANALYSIS
D96V1, survival
                  sevent
clus2               0  1
  CX3CL1 WILD-TYPE 36 49
CX3CL1 WILD-TYPE 
              85 
[1] 49
$`CX3CL1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       11.15        38.63         4.41         1.08        27.12         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
       12.03         8.12         8.84         9.99         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
       11.31        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 
        6.58         8.81         0.20         1.02        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       31.33        84.72        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

CX3CL1 WILD-TYPE 
             0.2 
CX3CL1 WILD-TYPE 
           98.76 
CX3CL1 WILD-TYPE 
           12.16 
[1] "0.2 - 98.8 (12.2)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A26D 
"CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A26D 
"CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A26D 
"CX3CL1 WILD-TYPE" 
D96V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  CX3CL1 MUTATED                    1             0
  CX3CL1 WILD-TYPE                 22             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CX3CL1 MUTATED                                                                                          0
  CX3CL1 WILD-TYPE                                                                                       32
                  vv
clus               REGIONAL LYMPH NODE
  CX3CL1 MUTATED                     2
  CX3CL1 WILD-TYPE                 103
D96V3, multiclass
                                                                                          clus
vv                                                                                         CX3CL1 MUTATED
  DISTANT METASTASIS                                                                                    1
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              0
  REGIONAL LYMPH NODE                                                                                   2
                                                                                          clus
vv                                                                                         CX3CL1 WILD-TYPE
  DISTANT METASTASIS                                                                                     22
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               32
  REGIONAL LYMPH NODE                                                                                   103
D96V4, binary
                  cls
clus                 0   1
  CX3CL1 MUTATED     1   2
  CX3CL1 WILD-TYPE  58 100
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CX3CL1 MUTATED      1    2
  CX3CL1 WILD-TYPE   58  100
        clus
vv       CX3CL1 MUTATED CX3CL1 WILD-TYPE
  FEMALE              1               58
  MALE                2              100
                  vv
clus                M0  M1 M1A M1B M1C
  CX3CL1 MUTATED     2   0   0   0   0
  CX3CL1 WILD-TYPE 138   2   1   2   2
D96V5, multiclass
[1] "Remove cluster labels:" "CX3CL1 MUTATED"        
clus
  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
               2              145 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GE       TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AE       TCGA-EE-A3AH 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J       TCGA-ER-A19M 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A19O       TCGA-ER-A1A1       TCGA-ER-A3ET       TCGA-FR-A3YO 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY       TCGA-FS-A1Z4 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP       TCGA-FS-A1ZQ 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT       TCGA-FS-A1ZU 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ       TCGA-FW-A3I3 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FW-A3R5       TCGA-GN-A261       TCGA-GN-A267       TCGA-GN-A268 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A26A 
"CX3CL1 WILD-TYPE" 
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CX3CL1 MUTATED    2  0   0   0  0   0   0   0  0  0
  CX3CL1 WILD-TYPE 86  2   7  15  1   4  10   5 15  1
D96V6, multiclass
[1] "Remove cluster labels:" "CX3CL1 MUTATED"        
clus
  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
               2              146 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GE       TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AE       TCGA-EE-A3AH 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J       TCGA-ER-A19M 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A19O       TCGA-ER-A1A1       TCGA-ER-A3ET       TCGA-FR-A3YO 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY       TCGA-FS-A1Z4 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP       TCGA-FS-A1ZQ 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT       TCGA-FS-A1ZU 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ       TCGA-FW-A3I3 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FW-A3R5       TCGA-GN-A261       TCGA-GN-A267       TCGA-GN-A268 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
D96V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CX3CL1 MUTATED             0       0        2        0        0         0
  CX3CL1 WILD-TYPE           4      16        8       13       18         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CX3CL1 MUTATED           0         0         0          0          0
  CX3CL1 WILD-TYPE         9         7         8          6         18
                  vv
clus               STAGE IIIC STAGE IV
  CX3CL1 MUTATED            0        0
  CX3CL1 WILD-TYPE         21        5
D96V8, multiclass
[1] "Remove cluster labels:" "CX3CL1 MUTATED"        
clus
  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
               2              140 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GK       TCGA-EE-A2GL 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO       TCGA-EE-A2GP 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT       TCGA-EE-A2GU 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7       TCGA-EE-A2M8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME       TCGA-EE-A2MG 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ       TCGA-EE-A2MK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN       TCGA-EE-A2MP 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS       TCGA-EE-A2MT 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MU       TCGA-EE-A3AE       TCGA-EE-A3AH       TCGA-ER-A19D 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19M       TCGA-ER-A19O       TCGA-ER-A1A1 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FR-A3YO       TCGA-FS-A1YW       TCGA-FS-A1YX 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1YY       TCGA-FS-A1Z4       TCGA-FS-A1ZA       TCGA-FS-A1ZB 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZC       TCGA-FS-A1ZD       TCGA-FS-A1ZE       TCGA-FS-A1ZF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZG       TCGA-FS-A1ZH       TCGA-FS-A1ZK       TCGA-FS-A1ZM 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZP       TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZT       TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZZ       TCGA-FW-A3I3       TCGA-FW-A3R5       TCGA-GN-A261 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 

Clustering(97) Variable = DEFB112 MUTATION ANALYSIS
D97V1, survival
                   sevent
clus2                0  1
  DEFB112 MUTATED    3  0
  DEFB112 WILD-TYPE 33 49
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                3                82 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                0                49 
$`DEFB112 MUTATED`
TCGA-DA-A1HV TCGA-EE-A29M TCGA-FW-A3R5 
       48.79        27.12         1.02 

$`DEFB112 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        4.01         2.86        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       38.63         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  DEFB112 MUTATED DEFB112 WILD-TYPE 
             1.02              0.20 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
            48.79             98.76 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
           27.120            12.095 
[1] "1.0 - 48.8 (27.1)" "0.2 - 98.8 (12.1)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-GN-A26D 
"DEFB112 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-GN-A26D 
"DEFB112 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-GN-A26D 
"DEFB112 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D97V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  DEFB112 MUTATED                    0             1
  DEFB112 WILD-TYPE                 23             0
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEFB112 MUTATED                                                                                          0
  DEFB112 WILD-TYPE                                                                                       32
                   vv
clus                REGIONAL LYMPH NODE
  DEFB112 MUTATED                     5
  DEFB112 WILD-TYPE                 100
D97V3, multiclass
                                                                                          clus
vv                                                                                         DEFB112 MUTATED
  DISTANT METASTASIS                                                                                     0
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               0
  REGIONAL LYMPH NODE                                                                                    5
                                                                                          clus
vv                                                                                         DEFB112 WILD-TYPE
  DISTANT METASTASIS                                                                                      23
  PRIMARY TUMOR                                                                                            0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                32
  REGIONAL LYMPH NODE                                                                                    100
D97V4, binary
                   cls
clus                 0  1
  DEFB112 MUTATED    2  4
  DEFB112 WILD-TYPE 57 98
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB112 MUTATED      2    4
  DEFB112 WILD-TYPE   57   98
        clus
vv       DEFB112 MUTATED DEFB112 WILD-TYPE
  FEMALE               2                57
  MALE                 4                98
                   vv
clus                 M0  M1 M1A M1B M1C
  DEFB112 MUTATED     6   0   0   0   0
  DEFB112 WILD-TYPE 134   2   1   2   2
D97V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEFB112 MUTATED    4  0   0   0  1   0   1   0  0  0
  DEFB112 WILD-TYPE 84  2   7  15  0   4   9   5 15  1
D97V6, multiclass
D97V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEFB112 MUTATED             0       1        0        2        1         0
  DEFB112 WILD-TYPE           4      15       10       11       17         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DEFB112 MUTATED           0         0         1          0          1
  DEFB112 WILD-TYPE         9         7         7          6         17
                   vv
clus                STAGE IIIC STAGE IV
  DEFB112 MUTATED            0        0
  DEFB112 WILD-TYPE         21        5
D97V8, multiclass

Clustering(98) Variable = FAM19A1 MUTATION ANALYSIS
D98V1, survival
                   sevent
clus2                0  1
  FAM19A1 MUTATED    1  3
  FAM19A1 WILD-TYPE 35 46
  FAM19A1 MUTATED FAM19A1 WILD-TYPE 
                4                81 
  FAM19A1 MUTATED FAM19A1 WILD-TYPE 
                3                46 
$`FAM19A1 MUTATED`
TCGA-DA-A1HV TCGA-EE-A182 TCGA-EE-A29D TCGA-GN-A266 
       48.79         1.35        11.15        10.09 

$`FAM19A1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        4.01         2.86        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.12        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
        5.13         8.81         7.96        37.97        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        1.08        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        9.99         2.43         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
        1.02        15.35        24.85        31.33        84.72        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  FAM19A1 MUTATED FAM19A1 WILD-TYPE 
             1.35              0.20 
  FAM19A1 MUTATED FAM19A1 WILD-TYPE 
            48.79             98.76 
  FAM19A1 MUTATED FAM19A1 WILD-TYPE 
            10.62             12.20 
[1] "1.4 - 48.8 (10.6)" "0.2 - 98.8 (12.2)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A26D 
"FAM19A1 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A26D 
"FAM19A1 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A26D 
"FAM19A1 WILD-TYPE" 
[1] "hr=" "1.5"
D98V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  FAM19A1 MUTATED                    1             0
  FAM19A1 WILD-TYPE                 22             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  FAM19A1 MUTATED                                                                                          1
  FAM19A1 WILD-TYPE                                                                                       31
                   vv
clus                REGIONAL LYMPH NODE
  FAM19A1 MUTATED                     5
  FAM19A1 WILD-TYPE                 100
D98V3, multiclass
                                                                                          clus
vv                                                                                         FAM19A1 MUTATED
  DISTANT METASTASIS                                                                                     1
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               1
  REGIONAL LYMPH NODE                                                                                    5
                                                                                          clus
vv                                                                                         FAM19A1 WILD-TYPE
  DISTANT METASTASIS                                                                                      22
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                31
  REGIONAL LYMPH NODE                                                                                    100
D98V4, binary
                   cls
clus                 0  1
  FAM19A1 MUTATED    3  4
  FAM19A1 WILD-TYPE 56 98
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM19A1 MUTATED      3    4
  FAM19A1 WILD-TYPE   56   98
        clus
vv       FAM19A1 MUTATED FAM19A1 WILD-TYPE
  FEMALE               3                56
  MALE                 4                98
                   vv
clus                 M0  M1 M1A M1B M1C
  FAM19A1 MUTATED     6   0   0   0   0
  FAM19A1 WILD-TYPE 134   2   1   2   2
D98V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  FAM19A1 MUTATED    3  0   0   2  0   0   1   0  0  0
  FAM19A1 WILD-TYPE 85  2   7  13  1   4   9   5 15  1
D98V6, multiclass
D98V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  FAM19A1 MUTATED             0       1        0        0        0         1
  FAM19A1 WILD-TYPE           4      15       10       13       18         6
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  FAM19A1 MUTATED           1         0         0          0          1
  FAM19A1 WILD-TYPE         8         7         8          6         17
                   vv
clus                STAGE IIIC STAGE IV
  FAM19A1 MUTATED            2        0
  FAM19A1 WILD-TYPE         19        5
D98V8, multiclass

Clustering(99) Variable = LONRF2 MUTATION ANALYSIS
D99V1, survival
                  sevent
clus2               0  1
  LONRF2 MUTATED    0  5
  LONRF2 WILD-TYPE 36 44
  LONRF2 MUTATED LONRF2 WILD-TYPE 
               5               80 
  LONRF2 MUTATED LONRF2 WILD-TYPE 
               5               44 
$`LONRF2 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A2JD TCGA-EE-A29L TCGA-GN-A266 TCGA-GN-A26A 
       70.16        11.41         1.08        10.09        12.16 

$`LONRF2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
        8.38        21.14        30.87         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        6.31         1.12         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        5.13         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        9.99         2.43         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
        1.02        15.35        24.85        31.33        84.72        16.21 
TCGA-GN-A268 TCGA-GN-A26D 
       15.39        14.70 

  LONRF2 MUTATED LONRF2 WILD-TYPE 
            1.08             0.20 
  LONRF2 MUTATED LONRF2 WILD-TYPE 
           70.16            98.76 
  LONRF2 MUTATED LONRF2 WILD-TYPE 
          11.410           12.595 
[1] "1.1 - 70.2 (11.4)" "0.2 - 98.8 (12.6)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" 
      TCGA-GN-A26D 
"LONRF2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" 
      TCGA-GN-A26D 
"LONRF2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" 
      TCGA-GN-A26D 
"LONRF2 WILD-TYPE" 
[1] "hr=" "1.9"
D99V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  LONRF2 MUTATED                    2             0
  LONRF2 WILD-TYPE                 21             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  LONRF2 MUTATED                                                                                          4
  LONRF2 WILD-TYPE                                                                                       28
                  vv
clus               REGIONAL LYMPH NODE
  LONRF2 MUTATED                     7
  LONRF2 WILD-TYPE                  98
D99V3, multiclass
                                                                                          clus
vv                                                                                         LONRF2 MUTATED
  DISTANT METASTASIS                                                                                    2
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              4
  REGIONAL LYMPH NODE                                                                                   7
                                                                                          clus
vv                                                                                         LONRF2 WILD-TYPE
  DISTANT METASTASIS                                                                                     21
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               28
  REGIONAL LYMPH NODE                                                                                    98
D99V4, binary
                  cls
clus                0  1
  LONRF2 MUTATED    4  9
  LONRF2 WILD-TYPE 55 93
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LONRF2 MUTATED      4    9
  LONRF2 WILD-TYPE   55   93
        clus
vv       LONRF2 MUTATED LONRF2 WILD-TYPE
  FEMALE              4               55
  MALE                9               93
                  vv
clus                M0  M1 M1A M1B M1C
  LONRF2 MUTATED     9   0   0   0   0
  LONRF2 WILD-TYPE 131   2   1   2   2
D99V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  LONRF2 MUTATED    4  1   1   2  0   0   0   0  1  0
  LONRF2 WILD-TYPE 84  1   6  13  1   4  10   5 14  1
D99V6, multiclass
D99V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  LONRF2 MUTATED             0       2        0        0        1         0
  LONRF2 WILD-TYPE           4      14       10       13       17         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  LONRF2 MUTATED           1         0         2          1          0
  LONRF2 WILD-TYPE         8         7         6          5         18
                  vv
clus               STAGE IIIC STAGE IV
  LONRF2 MUTATED            2        0
  LONRF2 WILD-TYPE         19        5
D99V8, multiclass

Clustering(100) Variable = NAP1L4 MUTATION ANALYSIS
D100V1, survival
                  sevent
clus2               0  1
  NAP1L4 MUTATED    1  2
  NAP1L4 WILD-TYPE 35 47
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
               3               82 
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
               2               47 
$`NAP1L4 MUTATED`
TCGA-D3-A2JD TCGA-DA-A1IB TCGA-EE-A183 
       11.41        22.36        12.20 

$`NAP1L4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        6.31         1.12         1.35         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        8.81         7.96        37.97        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        1.08        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        9.99         2.43         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        1.02        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
           11.41             0.20 
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
           22.36            98.76 
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
          12.200           12.095 
[1] "11.4 - 22.4 (12.2)" "0.2 - 98.8 (12.1)" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A26D 
"NAP1L4 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A26D 
"NAP1L4 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A26D 
"NAP1L4 WILD-TYPE" 
[1] "hr=" "1.1"
D100V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  NAP1L4 MUTATED                    0             0
  NAP1L4 WILD-TYPE                 23             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  NAP1L4 MUTATED                                                                                          1
  NAP1L4 WILD-TYPE                                                                                       31
                  vv
clus               REGIONAL LYMPH NODE
  NAP1L4 MUTATED                     5
  NAP1L4 WILD-TYPE                 100
D100V3, multiclass
                                                                                          clus
vv                                                                                         NAP1L4 MUTATED
  DISTANT METASTASIS                                                                                    0
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              1
  REGIONAL LYMPH NODE                                                                                   5
                                                                                          clus
vv                                                                                         NAP1L4 WILD-TYPE
  DISTANT METASTASIS                                                                                     23
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               31
  REGIONAL LYMPH NODE                                                                                   100
D100V4, binary
                  cls
clus                0  1
  NAP1L4 MUTATED    3  3
  NAP1L4 WILD-TYPE 56 99
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L4 MUTATED      3    3
  NAP1L4 WILD-TYPE   56   99
        clus
vv       NAP1L4 MUTATED NAP1L4 WILD-TYPE
  FEMALE              3               56
  MALE                3               99
                  vv
clus                M0  M1 M1A M1B M1C
  NAP1L4 MUTATED     6   0   0   0   0
  NAP1L4 WILD-TYPE 134   2   1   2   2
D100V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  NAP1L4 MUTATED    3  0   0   1  0   1   1   0  0  0
  NAP1L4 WILD-TYPE 85  2   7  14  1   3   9   5 15  1
D100V6, multiclass
D100V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  NAP1L4 MUTATED             0       2        0        0        1         0
  NAP1L4 WILD-TYPE           4      14       10       13       17         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  NAP1L4 MUTATED           0         0         0          1          0
  NAP1L4 WILD-TYPE         9         7         8          5         18
                  vv
clus               STAGE IIIC STAGE IV
  NAP1L4 MUTATED            2        0
  NAP1L4 WILD-TYPE         19        5
D100V8, multiclass

Clustering(101) Variable = OR5J2 MUTATION ANALYSIS
D101V1, survival
                 sevent
clus2              0  1
  OR5J2 MUTATED    3  2
  OR5J2 WILD-TYPE 33 47
  OR5J2 MUTATED OR5J2 WILD-TYPE 
              5              80 
  OR5J2 MUTATED OR5J2 WILD-TYPE 
              2              47 
$`OR5J2 MUTATED`
TCGA-D9-A3Z1 TCGA-DA-A3F3 TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29H 
        4.01         7.00         5.13        11.15         4.41 

$`OR5J2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
       22.36         6.64        19.36        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        6.31         1.12         1.35        12.20         4.27        36.07 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M 
        8.81         7.96        37.97        38.63         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V 
        9.47        12.03         8.12         8.84         9.99         2.43 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 
       78.44         6.58         8.81         0.20         1.02        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       24.85        31.33        84.72        10.09        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  OR5J2 MUTATED OR5J2 WILD-TYPE 
           4.01            0.20 
  OR5J2 MUTATED OR5J2 WILD-TYPE 
          11.15           98.76 
  OR5J2 MUTATED OR5J2 WILD-TYPE 
          5.130          13.155 
[1] "4.0 - 11.2 (5.1)"  "0.2 - 98.8 (13.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A26D 
"OR5J2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A26D 
"OR5J2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A26D 
"OR5J2 WILD-TYPE" 
[1] "hr=" "2.6"
D101V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OR5J2 MUTATED                    1             0
  OR5J2 WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR5J2 MUTATED                                                                                          1
  OR5J2 WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  OR5J2 MUTATED                     9
  OR5J2 WILD-TYPE                  96
D101V3, multiclass
                                                                                          clus
vv                                                                                         OR5J2 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  9
                                                                                          clus
vv                                                                                         OR5J2 WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   96
D101V4, binary
                 cls
clus               0  1
  OR5J2 MUTATED    6  5
  OR5J2 WILD-TYPE 53 97
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5J2 MUTATED      6    5
  OR5J2 WILD-TYPE   53   97
        clus
vv       OR5J2 MUTATED OR5J2 WILD-TYPE
  FEMALE             6              53
  MALE               5              97
                 vv
clus               M0  M1 M1A M1B M1C
  OR5J2 MUTATED     9   0   0   0   0
  OR5J2 WILD-TYPE 131   2   1   2   2
D101V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OR5J2 MUTATED    6  0   0   1  0   0   1   0  1  0
  OR5J2 WILD-TYPE 82  2   7  14  1   4   9   5 14  1
D101V6, multiclass
D101V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR5J2 MUTATED             0       1        2        1        2         0
  OR5J2 WILD-TYPE           4      15        8       12       16         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR5J2 MUTATED           0         0         0          0          1
  OR5J2 WILD-TYPE         9         7         8          6         17
                 vv
clus              STAGE IIIC STAGE IV
  OR5J2 MUTATED            2        0
  OR5J2 WILD-TYPE         19        5
D101V8, multiclass

Clustering(102) Variable = POM121 MUTATION ANALYSIS
D102V1, survival
                  sevent
clus2               0  1
  POM121 MUTATED    1  2
  POM121 WILD-TYPE 35 47
  POM121 MUTATED POM121 WILD-TYPE 
               3               82 
  POM121 MUTATED POM121 WILD-TYPE 
               2               47 
$`POM121 MUTATED`
TCGA-DA-A1I2 TCGA-EE-A181 TCGA-FW-A3R5 
       13.68         1.12         1.02 

$`POM121 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       39.19         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        5.13         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  POM121 MUTATED POM121 WILD-TYPE 
            1.02             0.20 
  POM121 MUTATED POM121 WILD-TYPE 
           13.68            98.76 
  POM121 MUTATED POM121 WILD-TYPE 
            1.12            12.18 
[1] "1.0 - 13.7 (1.1)"  "0.2 - 98.8 (12.2)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"POM121 WILD-TYPE"   "POM121 MUTATED" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE"   "POM121 MUTATED" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE"   "POM121 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-GN-A26D 
"POM121 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"POM121 WILD-TYPE"   "POM121 MUTATED" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE"   "POM121 MUTATED" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE"   "POM121 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-GN-A26D 
"POM121 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A1HV       TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A1I1       TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I5 
"POM121 WILD-TYPE"   "POM121 MUTATED" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A1I7       TCGA-DA-A1I8       TCGA-DA-A1IA       TCGA-DA-A1IB 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3       TCGA-DA-A3F5 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z       TCGA-EE-A181 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE"   "POM121 MUTATED" 
      TCGA-EE-A182       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A20H       TCGA-EE-A29A       TCGA-EE-A29C 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A29D       TCGA-EE-A29E       TCGA-EE-A29H       TCGA-EE-A29L 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A29M       TCGA-EE-A29N       TCGA-EE-A29P       TCGA-EE-A29Q 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V       TCGA-EE-A29X 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3I3       TCGA-FW-A3R5 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE"   "POM121 MUTATED" 
      TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" "POM121 WILD-TYPE" 
      TCGA-GN-A26D 
"POM121 WILD-TYPE" 
[1] "hr=" "3.3"
D102V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  POM121 MUTATED                    0             0
  POM121 WILD-TYPE                 23             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  POM121 MUTATED                                                                                          1
  POM121 WILD-TYPE                                                                                       31
                  vv
clus               REGIONAL LYMPH NODE
  POM121 MUTATED                    10
  POM121 WILD-TYPE                  95
D102V3, multiclass
                                                                                          clus
vv                                                                                         POM121 MUTATED
  DISTANT METASTASIS                                                                                    0
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              1
  REGIONAL LYMPH NODE                                                                                  10
                                                                                          clus
vv                                                                                         POM121 WILD-TYPE
  DISTANT METASTASIS                                                                                     23
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               31
  REGIONAL LYMPH NODE                                                                                    95
D102V4, binary
                  cls
clus                0  1
  POM121 MUTATED    3  8
  POM121 WILD-TYPE 56 94
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POM121 MUTATED      3    8
  POM121 WILD-TYPE   56   94
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  FEMALE              3               56
  MALE                8               94
                  vv
clus                M0  M1 M1A M1B M1C
  POM121 MUTATED    10   0   0   0   0
  POM121 WILD-TYPE 130   2   1   2   2
D102V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  POM121 MUTATED    7  0   1   0  1   0   1   0  0  0
  POM121 WILD-TYPE 81  2   6  15  0   4   9   5 15  1
D102V6, multiclass
D102V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  POM121 MUTATED             0       0        0        0        6         0
  POM121 WILD-TYPE           4      16       10       13       12         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  POM121 MUTATED           1         0         1          0          1
  POM121 WILD-TYPE         8         7         7          6         17
                  vv
clus               STAGE IIIC STAGE IV
  POM121 MUTATED            1        0
  POM121 WILD-TYPE         20        5
D102V8, multiclass

Clustering(103) Variable = RBM22 MUTATION ANALYSIS
D103V1, survival
                 sevent
clus2              0  1
  RBM22 MUTATED    0  2
  RBM22 WILD-TYPE 36 47
  RBM22 MUTATED RBM22 WILD-TYPE 
              2              83 
  RBM22 MUTATED RBM22 WILD-TYPE 
              2              47 
$`RBM22 MUTATED`
TCGA-EE-A20H TCGA-EE-A29D 
        8.81        11.15 

$`RBM22 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E 
        4.27        36.07         5.13         7.96        37.97        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        0.20         1.02        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  RBM22 MUTATED RBM22 WILD-TYPE 
           8.81            0.20 
  RBM22 MUTATED RBM22 WILD-TYPE 
          11.15           98.76 
  RBM22 MUTATED RBM22 WILD-TYPE 
           9.98           12.20 
[1] "8.8 - 11.2 (10.0)" "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"RBM22 WILD-TYPE"   "RBM22 MUTATED" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "RBM22 MUTATED" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A26D 
"RBM22 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"RBM22 WILD-TYPE"   "RBM22 MUTATED" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "RBM22 MUTATED" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A26D 
"RBM22 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"RBM22 WILD-TYPE"   "RBM22 MUTATED" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "RBM22 MUTATED" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A26D 
"RBM22 WILD-TYPE" 
[1] "Remove cluster labels:" "RBM22 MUTATED"         
clus
  RBM22 MUTATED RBM22 WILD-TYPE 
              2              83 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29E 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0      TCGA-EE-A2A1 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6      TCGA-ER-A19D 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-ER-A19F      TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19M 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-ER-A19N      TCGA-ER-A1A1      TCGA-ER-A3ET      TCGA-FS-A1ZR 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-FW-A3R5      TCGA-GN-A261      TCGA-GN-A262 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
D103V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  RBM22 MUTATED                    1             0
  RBM22 WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  RBM22 MUTATED                                                                                          0
  RBM22 WILD-TYPE                                                                                       32
                 vv
clus              REGIONAL LYMPH NODE
  RBM22 MUTATED                     3
  RBM22 WILD-TYPE                 102
D103V3, multiclass
                                                                                          clus
vv                                                                                         RBM22 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                  3
                                                                                          clus
vv                                                                                         RBM22 WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                  102
D103V4, binary
                 cls
clus               0  1
  RBM22 MUTATED    0  4
  RBM22 WILD-TYPE 59 98
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM22 MUTATED      0    4
  RBM22 WILD-TYPE   59   98
        clus
vv       RBM22 MUTATED RBM22 WILD-TYPE
  FEMALE             0              59
  MALE               4              98
                 vv
clus               M0  M1 M1A M1B M1C
  RBM22 MUTATED     4   0   0   0   0
  RBM22 WILD-TYPE 136   2   1   2   2
D103V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  RBM22 MUTATED    3  0   0   1  0   0   0   0  0  0
  RBM22 WILD-TYPE 85  2   7  14  1   4  10   5 15  1
D103V6, multiclass
D103V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RBM22 MUTATED             0       2        0        0        1         0
  RBM22 WILD-TYPE           4      14       10       13       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  RBM22 MUTATED           0         0         0          0          0
  RBM22 WILD-TYPE         9         7         8          6         18
                 vv
clus              STAGE IIIC STAGE IV
  RBM22 MUTATED            1        0
  RBM22 WILD-TYPE         20        5
D103V8, multiclass

Clustering(104) Variable = SLC10A2 MUTATION ANALYSIS
D104V1, survival
                   sevent
clus2                0  1
  SLC10A2 MUTATED    8  4
  SLC10A2 WILD-TYPE 28 45
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
               12                73 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                4                45 
$`SLC10A2 MUTATED`
TCGA-D3-A2JF TCGA-DA-A1HY TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29D 
       30.87        51.12         1.35         4.27         5.13        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A2A2 TCGA-ER-A19M TCGA-FW-A3R5 TCGA-GN-A265 
       38.63         4.41        23.90        28.64         1.02        84.72 

$`SLC10A2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        48.79        35.80        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A 
        6.31         1.12        12.20        36.07         8.81         7.96 
TCGA-EE-A29C TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       37.97         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         0.20        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       24.85        31.33        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
             1.02              0.20 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
            84.72             98.76 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
           17.525            12.160 
[1] "1.0 - 84.7 (17.5)" "0.2 - 98.8 (12.2)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "SLC10A2 MUTATED"   "SLC10A2 MUTATED"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-GN-A26D 
"SLC10A2 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "SLC10A2 MUTATED"   "SLC10A2 MUTATED"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-GN-A26D 
"SLC10A2 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
  "SLC10A2 MUTATED"   "SLC10A2 MUTATED"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-GN-A26D 
"SLC10A2 WILD-TYPE" 
[1] "hr=" "2"  
D104V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  SLC10A2 MUTATED                    3             0
  SLC10A2 WILD-TYPE                 20             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  SLC10A2 MUTATED                                                                                          0
  SLC10A2 WILD-TYPE                                                                                       32
                   vv
clus                REGIONAL LYMPH NODE
  SLC10A2 MUTATED                    12
  SLC10A2 WILD-TYPE                  93
D104V3, multiclass
                                                                                          clus
vv                                                                                         SLC10A2 MUTATED
  DISTANT METASTASIS                                                                                     3
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               0
  REGIONAL LYMPH NODE                                                                                   12
                                                                                          clus
vv                                                                                         SLC10A2 WILD-TYPE
  DISTANT METASTASIS                                                                                      20
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                32
  REGIONAL LYMPH NODE                                                                                     93
D104V4, binary
                   cls
clus                 0  1
  SLC10A2 MUTATED    6  9
  SLC10A2 WILD-TYPE 53 93
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC10A2 MUTATED      6    9
  SLC10A2 WILD-TYPE   53   93
        clus
vv       SLC10A2 MUTATED SLC10A2 WILD-TYPE
  FEMALE               6                53
  MALE                 9                93
                   vv
clus                 M0  M1 M1A M1B M1C
  SLC10A2 MUTATED    14   0   0   0   0
  SLC10A2 WILD-TYPE 126   2   1   2   2
D104V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  SLC10A2 MUTATED    7  0   0   4  1   0   0   0  2  0
  SLC10A2 WILD-TYPE 81  2   7  11  0   4  10   5 13  1
D104V6, multiclass
D104V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SLC10A2 MUTATED             1       0        4        1        1         0
  SLC10A2 WILD-TYPE           3      16        6       12       17         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SLC10A2 MUTATED           0         0         1          0          2
  SLC10A2 WILD-TYPE         9         7         7          6         16
                   vv
clus                STAGE IIIC STAGE IV
  SLC10A2 MUTATED            4        0
  SLC10A2 WILD-TYPE         17        5
D104V8, multiclass

Clustering(105) Variable = C4ORF22 MUTATION ANALYSIS
D105V1, survival
                   sevent
clus2                0  1
  C4ORF22 MUTATED    3  1
  C4ORF22 WILD-TYPE 33 48
  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
                4                81 
  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
                1                48 
$`C4ORF22 MUTATED`
TCGA-DA-A3F8 TCGA-EE-A29L TCGA-EE-A29R TCGA-EE-A2A1 
       14.83         1.08         8.84        25.28 

$`C4ORF22 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       38.63         4.41        27.12         9.47        12.03         8.12 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 
        9.99         2.43         8.09        11.31        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 
       42.84        78.44         6.58         8.81         0.20         1.02 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       15.35        24.85        31.33        84.72        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
             1.08              0.20 
  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
            25.28             98.76 
  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
           11.835            12.160 
[1] "1.1 - 25.3 (11.8)" "0.2 - 98.8 (12.2)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
  "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
  "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A26D 
"C4ORF22 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
  "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
  "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A26D 
"C4ORF22 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
  "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
  "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A26D 
"C4ORF22 WILD-TYPE" 
[1] "hr=" "1.8"
D105V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  C4ORF22 MUTATED                    2             0
  C4ORF22 WILD-TYPE                 21             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  C4ORF22 MUTATED                                                                                          0
  C4ORF22 WILD-TYPE                                                                                       32
                   vv
clus                REGIONAL LYMPH NODE
  C4ORF22 MUTATED                     6
  C4ORF22 WILD-TYPE                  99
D105V3, multiclass
                                                                                          clus
vv                                                                                         C4ORF22 MUTATED
  DISTANT METASTASIS                                                                                     2
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               0
  REGIONAL LYMPH NODE                                                                                    6
                                                                                          clus
vv                                                                                         C4ORF22 WILD-TYPE
  DISTANT METASTASIS                                                                                      21
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                32
  REGIONAL LYMPH NODE                                                                                     99
D105V4, binary
                   cls
clus                 0  1
  C4ORF22 MUTATED    2  6
  C4ORF22 WILD-TYPE 57 96
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C4ORF22 MUTATED      2    6
  C4ORF22 WILD-TYPE   57   96
        clus
vv       C4ORF22 MUTATED C4ORF22 WILD-TYPE
  FEMALE               2                57
  MALE                 6                96
                   vv
clus                 M0  M1 M1A M1B M1C
  C4ORF22 MUTATED     7   0   0   0   0
  C4ORF22 WILD-TYPE 133   2   1   2   2
D105V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  C4ORF22 MUTATED    4  0   0   1  0   0   1   0  1  0
  C4ORF22 WILD-TYPE 84  2   7  14  1   4   9   5 14  1
D105V6, multiclass
D105V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  C4ORF22 MUTATED             1       0        1        1        1         0
  C4ORF22 WILD-TYPE           3      16        9       12       17         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  C4ORF22 MUTATED           0         0         0          0          1
  C4ORF22 WILD-TYPE         9         7         8          6         17
                   vv
clus                STAGE IIIC STAGE IV
  C4ORF22 MUTATED            2        0
  C4ORF22 WILD-TYPE         19        5
D105V8, multiclass

Clustering(106) Variable = CLEC14A MUTATION ANALYSIS
D106V1, survival
                   sevent
clus2                0  1
  CLEC14A MUTATED    4  2
  CLEC14A WILD-TYPE 32 47
  CLEC14A MUTATED CLEC14A WILD-TYPE 
                6                79 
  CLEC14A MUTATED CLEC14A WILD-TYPE 
                2                47 
$`CLEC14A MUTATED`
TCGA-DA-A3F8 TCGA-EE-A29A TCGA-EE-A2A2 TCGA-FW-A3R5 TCGA-GN-A262 TCGA-GN-A266 
       14.83         7.96        23.90         1.02        24.85        10.09 

$`CLEC14A WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       36.07         5.13         8.81        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-GN-A261 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       15.35        31.33        84.72        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  CLEC14A MUTATED CLEC14A WILD-TYPE 
             1.02              0.20 
  CLEC14A MUTATED CLEC14A WILD-TYPE 
            24.85             98.76 
  CLEC14A MUTATED CLEC14A WILD-TYPE 
            12.46             12.16 
[1] "1.0 - 24.9 (12.5)" "0.2 - 98.8 (12.2)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-GN-A26D 
"CLEC14A WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-GN-A26D 
"CLEC14A WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-GN-A26D 
"CLEC14A WILD-TYPE" 
[1] "hr=" "1.4"
D106V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  CLEC14A MUTATED                    2             0
  CLEC14A WILD-TYPE                 21             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CLEC14A MUTATED                                                                                          3
  CLEC14A WILD-TYPE                                                                                       29
                   vv
clus                REGIONAL LYMPH NODE
  CLEC14A MUTATED                    10
  CLEC14A WILD-TYPE                  95
D106V3, multiclass
                                                                                          clus
vv                                                                                         CLEC14A MUTATED
  DISTANT METASTASIS                                                                                     2
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               3
  REGIONAL LYMPH NODE                                                                                   10
                                                                                          clus
vv                                                                                         CLEC14A WILD-TYPE
  DISTANT METASTASIS                                                                                      21
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                29
  REGIONAL LYMPH NODE                                                                                     95
D106V4, binary
                   cls
clus                 0  1
  CLEC14A MUTATED    3 12
  CLEC14A WILD-TYPE 56 90
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CLEC14A MUTATED      3   12
  CLEC14A WILD-TYPE   56   90
        clus
vv       CLEC14A MUTATED CLEC14A WILD-TYPE
  FEMALE               3                56
  MALE                12                90
                   vv
clus                 M0  M1 M1A M1B M1C
  CLEC14A MUTATED    12   0   0   0   0
  CLEC14A WILD-TYPE 128   2   1   2   2
D106V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CLEC14A MUTATED    6  0   2   1  1   0   1   1  0  0
  CLEC14A WILD-TYPE 82  2   5  14  0   4   9   4 15  1
D106V6, multiclass
D106V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CLEC14A MUTATED             1       2        0        1        2         0
  CLEC14A WILD-TYPE           3      14       10       12       16         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CLEC14A MUTATED           0         0         2          1          3
  CLEC14A WILD-TYPE         9         7         6          5         15
                   vv
clus                STAGE IIIC STAGE IV
  CLEC14A MUTATED            0        0
  CLEC14A WILD-TYPE         21        5
D106V8, multiclass

Clustering(107) Variable = GNAI2 MUTATION ANALYSIS
D107V1, survival
                 sevent
clus2              0  1
  GNAI2 MUTATED    1  1
  GNAI2 WILD-TYPE 35 48
  GNAI2 MUTATED GNAI2 WILD-TYPE 
              2              83 
  GNAI2 MUTATED GNAI2 WILD-TYPE 
              1              48 
$`GNAI2 MUTATED`
TCGA-FW-A3R5 TCGA-GN-A266 
        1.02        10.09 

$`GNAI2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       11.15        38.63         4.41         1.08        27.12         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
       12.03         8.12         8.84         9.99         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
       11.31        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        6.58         8.81         0.20        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        16.21        15.39        12.16        14.70 

  GNAI2 MUTATED GNAI2 WILD-TYPE 
           1.02            0.20 
  GNAI2 MUTATED GNAI2 WILD-TYPE 
          10.09           98.76 
  GNAI2 MUTATED GNAI2 WILD-TYPE 
          5.555          12.200 
[1] "1.0 - 10.1 (5.6)"  "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE"   "GNAI2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "GNAI2 MUTATED" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-GN-A26D 
"GNAI2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE"   "GNAI2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "GNAI2 MUTATED" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-GN-A26D 
"GNAI2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE"   "GNAI2 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
  "GNAI2 MUTATED" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-GN-A26D 
"GNAI2 WILD-TYPE" 
[1] "Remove cluster labels:" "GNAI2 MUTATED"         
clus
  GNAI2 MUTATED GNAI2 WILD-TYPE 
              2              83 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-GN-A261 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A267 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
     TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" "GNAI2 WILD-TYPE" 
D107V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  GNAI2 MUTATED                    1             0
  GNAI2 WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  GNAI2 MUTATED                                                                                          1
  GNAI2 WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  GNAI2 MUTATED                     2
  GNAI2 WILD-TYPE                 103
D107V3, multiclass
                                                                                          clus
vv                                                                                         GNAI2 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  2
                                                                                          clus
vv                                                                                         GNAI2 WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                  103
D107V4, binary
                 cls
clus                0   1
  GNAI2 MUTATED     2   2
  GNAI2 WILD-TYPE  57 100
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GNAI2 MUTATED      2    2
  GNAI2 WILD-TYPE   57  100
        clus
vv       GNAI2 MUTATED GNAI2 WILD-TYPE
  FEMALE             2              57
  MALE               2             100
                 vv
clus               M0  M1 M1A M1B M1C
  GNAI2 MUTATED     3   0   0   0   0
  GNAI2 WILD-TYPE 137   2   1   2   2
D107V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  GNAI2 MUTATED    1  0   0   0  1   0   0   1  0  0
  GNAI2 WILD-TYPE 87  2   7  15  0   4  10   4 15  1
D107V6, multiclass
D107V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GNAI2 MUTATED             0       0        1        0        0         0
  GNAI2 WILD-TYPE           4      16        9       13       18         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  GNAI2 MUTATED           0         0         1          0          1
  GNAI2 WILD-TYPE         9         7         7          6         17
                 vv
clus              STAGE IIIC STAGE IV
  GNAI2 MUTATED            0        0
  GNAI2 WILD-TYPE         21        5
D107V8, multiclass

Clustering(108) Variable = IGF2BP3 MUTATION ANALYSIS
D108V1, survival
                   sevent
clus2                0  1
  IGF2BP3 WILD-TYPE 36 49
IGF2BP3 WILD-TYPE 
               85 
[1] 49
$`IGF2BP3 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       14.83        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       11.15        38.63         4.41         1.08        27.12         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
       12.03         8.12         8.84         9.99         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
       11.31        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 
        6.58         8.81         0.20         1.02        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       31.33        84.72        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

IGF2BP3 WILD-TYPE 
              0.2 
IGF2BP3 WILD-TYPE 
            98.76 
IGF2BP3 WILD-TYPE 
            12.16 
[1] "0.2 - 98.8 (12.2)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A26D 
"IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A26D 
"IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3I3        TCGA-FW-A3R5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A26D 
"IGF2BP3 WILD-TYPE" 
D108V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  IGF2BP3 MUTATED                    1             0
  IGF2BP3 WILD-TYPE                 22             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  IGF2BP3 MUTATED                                                                                          0
  IGF2BP3 WILD-TYPE                                                                                       32
                   vv
clus                REGIONAL LYMPH NODE
  IGF2BP3 MUTATED                     2
  IGF2BP3 WILD-TYPE                 103
D108V3, multiclass
                                                                                          clus
vv                                                                                         IGF2BP3 MUTATED
  DISTANT METASTASIS                                                                                     1
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               0
  REGIONAL LYMPH NODE                                                                                    2
                                                                                          clus
vv                                                                                         IGF2BP3 WILD-TYPE
  DISTANT METASTASIS                                                                                      22
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                32
  REGIONAL LYMPH NODE                                                                                    103
D108V4, binary
                   cls
clus                  0   1
  IGF2BP3 MUTATED     1   2
  IGF2BP3 WILD-TYPE  58 100
[1] "tbl2"
                   cls
clus                [,1] [,2]
  IGF2BP3 MUTATED      1    2
  IGF2BP3 WILD-TYPE   58  100
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  FEMALE               1                58
  MALE                 2               100
                   vv
clus                 M0  M1 M1A M1B M1C
  IGF2BP3 MUTATED     2   0   0   0   0
  IGF2BP3 WILD-TYPE 138   2   1   2   2
D108V5, multiclass
[1] "Remove cluster labels:" "IGF2BP3 MUTATED"       
clus
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                2               145 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AE        TCGA-EE-A3AH 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19M 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A19O        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-FR-A3YO 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY        TCGA-FS-A1Z0 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1Z4        TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZD        TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZH        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FW-A3I3 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FW-A3R5        TCGA-GN-A261        TCGA-GN-A267        TCGA-GN-A268 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A26A 
"IGF2BP3 WILD-TYPE" 
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  IGF2BP3 MUTATED    2  0   0   0  0   0   0   0  0  0
  IGF2BP3 WILD-TYPE 86  2   7  15  1   4  10   5 15  1
D108V6, multiclass
[1] "Remove cluster labels:" "IGF2BP3 MUTATED"       
clus
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                2               146 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P        TCGA-EE-A29Q 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AE        TCGA-EE-A3AH 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19M 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A19O        TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-FR-A3YO 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY        TCGA-FS-A1Z0 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1Z4        TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZD        TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZH        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FW-A3I3 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FW-A3R5        TCGA-GN-A261        TCGA-GN-A267        TCGA-GN-A268 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
D108V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  IGF2BP3 MUTATED             0       0        1        0        0         0
  IGF2BP3 WILD-TYPE           4      16        9       13       18         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  IGF2BP3 MUTATED           1         0         0          0          0
  IGF2BP3 WILD-TYPE         8         7         8          6         18
                   vv
clus                STAGE IIIC STAGE IV
  IGF2BP3 MUTATED            0        0
  IGF2BP3 WILD-TYPE         21        5
D108V8, multiclass
[1] "Remove cluster labels:" "IGF2BP3 MUTATED"       
clus
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                2               140 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I1        TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I7        TCGA-DA-A1I8        TCGA-DA-A1IA        TCGA-DA-A1IB 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3        TCGA-DA-A3F5 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z        TCGA-EE-A181 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A182        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A        TCGA-EE-A29C 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H        TCGA-EE-A29L 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29M        TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GK        TCGA-EE-A2GL 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO        TCGA-EE-A2GP 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT        TCGA-EE-A2GU 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7        TCGA-EE-A2M8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME        TCGA-EE-A2MG 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ        TCGA-EE-A2MK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN        TCGA-EE-A2MP 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS        TCGA-EE-A2MT 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MU        TCGA-EE-A3AE        TCGA-EE-A3AH        TCGA-ER-A19D 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19M        TCGA-ER-A19O        TCGA-ER-A1A1 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FR-A3YO        TCGA-FS-A1YW        TCGA-FS-A1YX 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1YY        TCGA-FS-A1Z0        TCGA-FS-A1Z4        TCGA-FS-A1ZA 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZQ        TCGA-FS-A1ZR 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FW-A3I3        TCGA-FW-A3R5        TCGA-GN-A261 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 

Clustering(109) Variable = RBM46 MUTATION ANALYSIS
D109V1, survival
                 sevent
clus2              0  1
  RBM46 MUTATED    4  2
  RBM46 WILD-TYPE 32 47
  RBM46 MUTATED RBM46 WILD-TYPE 
              6              79 
  RBM46 MUTATED RBM46 WILD-TYPE 
              2              47 
$`RBM46 MUTATED`
TCGA-D3-A2JF TCGA-DA-A1HV TCGA-EE-A29D TCGA-EE-A29M TCGA-ER-A19F TCGA-FW-A3R5 
       30.87        48.79        11.15        27.12        11.11         1.02 

$`RBM46 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
        6.64        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        6.31         1.12         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
        5.13         8.81         7.96        37.97        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        1.08         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        2.43         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        8.94         3.52         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       78.44         6.58         8.81         0.20        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       31.33        84.72        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  RBM46 MUTATED RBM46 WILD-TYPE 
           1.02            0.20 
  RBM46 MUTATED RBM46 WILD-TYPE 
          48.79           98.76 
  RBM46 MUTATED RBM46 WILD-TYPE 
         19.135          12.160 
[1] "1.0 - 48.8 (19.1)" "0.2 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE"   "RBM46 MUTATED" "RBM46 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "RBM46 MUTATED" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "RBM46 MUTATED" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "RBM46 MUTATED" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE"   "RBM46 MUTATED" "RBM46 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE"   "RBM46 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-GN-A26D 
"RBM46 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE"   "RBM46 MUTATED" "RBM46 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "RBM46 MUTATED" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "RBM46 MUTATED" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "RBM46 MUTATED" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE"   "RBM46 MUTATED" "RBM46 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE"   "RBM46 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-GN-A26D 
"RBM46 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE"   "RBM46 MUTATED" "RBM46 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
  "RBM46 MUTATED" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
  "RBM46 MUTATED" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
  "RBM46 MUTATED" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE"   "RBM46 MUTATED" "RBM46 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE"   "RBM46 MUTATED" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" "RBM46 WILD-TYPE" 
     TCGA-GN-A26D 
"RBM46 WILD-TYPE" 
[1] "hr=" "2"  
D109V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  RBM46 MUTATED                    2             1
  RBM46 WILD-TYPE                 21             0
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  RBM46 MUTATED                                                                                          1
  RBM46 WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  RBM46 MUTATED                     7
  RBM46 WILD-TYPE                  98
D109V3, multiclass
                                                                                          clus
vv                                                                                         RBM46 MUTATED
  DISTANT METASTASIS                                                                                   2
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  7
                                                                                          clus
vv                                                                                         RBM46 WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   98
D109V4, binary
                 cls
clus               0  1
  RBM46 MUTATED    5  6
  RBM46 WILD-TYPE 54 96
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM46 MUTATED      5    6
  RBM46 WILD-TYPE   54   96
        clus
vv       RBM46 MUTATED RBM46 WILD-TYPE
  FEMALE             5              54
  MALE               6              96
                 vv
clus               M0  M1 M1A M1B M1C
  RBM46 MUTATED    11   0   0   0   0
  RBM46 WILD-TYPE 129   2   1   2   2
D109V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  RBM46 MUTATED    7  0   0   1  1   0   1   1  0  0
  RBM46 WILD-TYPE 81  2   7  14  0   4   9   4 15  1
D109V6, multiclass
D109V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RBM46 MUTATED             0       3        1        1        1         0
  RBM46 WILD-TYPE           4      13        9       12       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  RBM46 MUTATED           0         0         1          0          2
  RBM46 WILD-TYPE         9         7         7          6         16
                 vv
clus              STAGE IIIC STAGE IV
  RBM46 MUTATED            1        0
  RBM46 WILD-TYPE         20        5
D109V8, multiclass

Clustering(110) Variable = SERPINB4 MUTATION ANALYSIS
D110V1, survival
                    sevent
clus2                 0  1
  SERPINB4 MUTATED    6  7
  SERPINB4 WILD-TYPE 30 42
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                13                 72 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                 7                 42 
$`SERPINB4 MUTATED`
TCGA-D3-A1Q6 TCGA-DA-A1I0 TCGA-DA-A1IC TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A181 
       70.16        10.03         6.64        14.83        11.57         1.12 
TCGA-EE-A29E TCGA-EE-A29R TCGA-EE-A29S TCGA-ER-A19M TCGA-ER-A1A1 TCGA-FW-A3R5 
       38.63         8.84         9.99        28.64        78.44         1.02 
TCGA-GN-A267 
       16.21 

$`SERPINB4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
        8.38        21.14        11.41        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        48.79        35.80        51.12        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 
       19.36         7.00        17.56         6.31         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       11.15         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.12         2.43         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19N TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       42.84         6.58         8.81         0.20        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        10.09        15.39        12.16        14.70 

  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
              1.02               0.20 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
             78.44              98.76 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
             11.57              12.18 
[1] "1.0 - 78.4 (11.6)" "0.2 - 98.8 (12.2)"
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A26D 
"SERPINB4 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A26D 
"SERPINB4 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1I5         TCGA-DA-A1I7         TCGA-DA-A1I8 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1IA         TCGA-DA-A1IB         TCGA-DA-A1IC 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A182         TCGA-EE-A183 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A20H         TCGA-EE-A29A         TCGA-EE-A29C 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29M         TCGA-EE-A29N 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-EE-A29S         TCGA-EE-A29V         TCGA-EE-A29X 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-ER-A19D 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A19F         TCGA-ER-A19J         TCGA-ER-A19L 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A19M         TCGA-ER-A19N         TCGA-ER-A1A1 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-ER-A3ET         TCGA-FS-A1ZR         TCGA-FW-A3I3 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A26D 
"SERPINB4 WILD-TYPE" 
[1] "hr=" "1.2"
D110V2, continuous
                    vv
clus                 DISTANT METASTASIS PRIMARY TUMOR
  SERPINB4 MUTATED                    1             0
  SERPINB4 WILD-TYPE                 22             1
                    vv
clus                 REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  SERPINB4 MUTATED                                                                                          3
  SERPINB4 WILD-TYPE                                                                                       29
                    vv
clus                 REGIONAL LYMPH NODE
  SERPINB4 MUTATED                    17
  SERPINB4 WILD-TYPE                  88
D110V3, multiclass
                                                                                          clus
vv                                                                                         SERPINB4 MUTATED
  DISTANT METASTASIS                                                                                      1
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                3
  REGIONAL LYMPH NODE                                                                                    17
                                                                                          clus
vv                                                                                         SERPINB4 WILD-TYPE
  DISTANT METASTASIS                                                                                       22
  PRIMARY TUMOR                                                                                             1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 29
  REGIONAL LYMPH NODE                                                                                      88
D110V4, binary
                    cls
clus                  0  1
  SERPINB4 MUTATED    3 18
  SERPINB4 WILD-TYPE 56 84
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB4 MUTATED      3   18
  SERPINB4 WILD-TYPE   56   84
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  FEMALE                3                 56
  MALE                 18                 84
                    vv
clus                  M0  M1 M1A M1B M1C
  SERPINB4 MUTATED    19   0   1   0   0
  SERPINB4 WILD-TYPE 121   2   0   2   2
D110V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  SERPINB4 MUTATED   10  0   2   3  1   0   1   1  2  0
  SERPINB4 WILD-TYPE 78  2   5  12  0   4   9   4 13  1
D110V6, multiclass
D110V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SERPINB4 MUTATED             0       2        2        1        3         1
  SERPINB4 WILD-TYPE           4      14        8       12       15         6
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SERPINB4 MUTATED           1         0         2          2          3
  SERPINB4 WILD-TYPE         8         7         6          4         15
                    vv
clus                 STAGE IIIC STAGE IV
  SERPINB4 MUTATED            3        0
  SERPINB4 WILD-TYPE         18        5
D110V8, multiclass

Clustering(111) Variable = SORT1 MUTATION ANALYSIS
D111V1, survival
                 sevent
clus2              0  1
  SORT1 MUTATED    1  2
  SORT1 WILD-TYPE 35 47
  SORT1 MUTATED SORT1 WILD-TYPE 
              3              82 
  SORT1 MUTATED SORT1 WILD-TYPE 
              2              47 
$`SORT1 MUTATED`
TCGA-D9-A3Z1 TCGA-EE-A182 TCGA-EE-A29V 
        4.01         1.35         2.43 

$`SORT1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       10.26         8.38        21.14        11.41        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       15.25        45.70        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.12        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        5.13         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3I3 
       28.64        42.84        78.44         6.58         8.81         0.20 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        1.02        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  SORT1 MUTATED SORT1 WILD-TYPE 
           1.35            0.20 
  SORT1 MUTATED SORT1 WILD-TYPE 
           4.01           98.76 
  SORT1 MUTATED SORT1 WILD-TYPE 
          2.430          12.595 
[1] "1.4 - 4.0 (2.4)"   "0.2 - 98.8 (12.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE"   "SORT1 MUTATED" "SORT1 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "SORT1 MUTATED" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE"   "SORT1 MUTATED" "SORT1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-GN-A26D 
"SORT1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE"   "SORT1 MUTATED" "SORT1 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "SORT1 MUTATED" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE"   "SORT1 MUTATED" "SORT1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-GN-A26D 
"SORT1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE"   "SORT1 MUTATED" "SORT1 WILD-TYPE" 
     TCGA-DA-A1HV      TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-DA-A1I1      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I5 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-DA-A1I7      TCGA-DA-A1I8      TCGA-DA-A1IA      TCGA-DA-A1IB 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3      TCGA-DA-A3F5 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z      TCGA-EE-A181 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A182      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "SORT1 MUTATED" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A20H      TCGA-EE-A29A      TCGA-EE-A29C 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H      TCGA-EE-A29L 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A29M      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A29X 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE"   "SORT1 MUTATED" "SORT1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3I3      TCGA-FW-A3R5 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A 
"SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" "SORT1 WILD-TYPE" 
     TCGA-GN-A26D 
"SORT1 WILD-TYPE" 
[1] "hr=" "23" 
D111V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  SORT1 MUTATED                    3             0
  SORT1 WILD-TYPE                 20             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  SORT1 MUTATED                                                                                          0
  SORT1 WILD-TYPE                                                                                       32
                 vv
clus              REGIONAL LYMPH NODE
  SORT1 MUTATED                     2
  SORT1 WILD-TYPE                 103
D111V3, multiclass
                                                                                          clus
vv                                                                                         SORT1 MUTATED
  DISTANT METASTASIS                                                                                   3
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                  2
                                                                                          clus
vv                                                                                         SORT1 WILD-TYPE
  DISTANT METASTASIS                                                                                    20
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                  103
D111V4, binary
                 cls
clus               0  1
  SORT1 MUTATED    1  4
  SORT1 WILD-TYPE 58 98
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SORT1 MUTATED      1    4
  SORT1 WILD-TYPE   58   98
        clus
vv       SORT1 MUTATED SORT1 WILD-TYPE
  FEMALE             1              58
  MALE               4              98
                 vv
clus               M0  M1 M1A M1B M1C
  SORT1 MUTATED     5   0   0   0   0
  SORT1 WILD-TYPE 135   2   1   2   2
D111V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  SORT1 MUTATED    2  0   0   2  0   0   0   0  1  0
  SORT1 WILD-TYPE 86  2   7  13  1   4  10   5 14  1
D111V6, multiclass
D111V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SORT1 MUTATED             1       0        0        1        0         0
  SORT1 WILD-TYPE           3      16       10       12       18         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SORT1 MUTATED           0         0         0          0          0
  SORT1 WILD-TYPE         9         7         8          6         18
                 vv
clus              STAGE IIIC STAGE IV
  SORT1 MUTATED            3        0
  SORT1 WILD-TYPE         18        5
D111V8, multiclass
                     V1.D                        V2                        V3 
          "Time to Death"                     "AGE" "PRIMARY.SITE.OF.DISEASE" 
                       V4                        V5                        V6 
                 "GENDER"      "DISTANT.METASTASIS"   "LYMPH.NODE.METASTASIS" 
                       V7                        V8 
        "TUMOR.STAGECODE"   "NEOPLASM.DISEASESTAGE" 
> q(save="no")
