Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-BF-A1PU-01A-11D-A192-01	TCGA-BF-A1PV-01A-11D-A192-01	TCGA-BF-A1PX-01A-12D-A192-01	TCGA-BF-A1PZ-01A-11D-A192-01	TCGA-BF-A1Q0-01A-21D-A192-01	TCGA-BF-A3DJ-01A-11D-A20B-01	TCGA-BF-A3DL-01A-11D-A20B-01	TCGA-BF-A3DM-01A-11D-A20B-01	TCGA-BF-A3DN-01A-11D-A20B-01	TCGA-D9-A1X3-01A-11D-A191-01	TCGA-D9-A3Z4-01A-11D-A238-01	TCGA-D9-A4Z2-01A-11D-A24Q-01	TCGA-EB-A1NK-01A-11D-A194-01	TCGA-EB-A24C-01A-11D-A191-01	TCGA-EB-A24D-01A-11D-A191-01	TCGA-EB-A299-01A-21D-A191-01	TCGA-EB-A3HV-01A-11D-A219-01	TCGA-EB-A3XB-01A-11D-A238-01	TCGA-EB-A3XC-01A-11D-A238-01	TCGA-EB-A3XD-01A-22D-A238-01	TCGA-EB-A3XE-01A-12D-A238-01	TCGA-EB-A3XF-01A-31D-A238-01	TCGA-EB-A3Y6-01A-21D-A238-01	TCGA-EB-A3Y7-01A-11D-A238-01	TCGA-EB-A41A-01A-11D-A24Q-01	TCGA-EB-A41B-01A-11D-A24Q-01	TCGA-EB-A42Y-01A-12D-A24Q-01	TCGA-EB-A42Z-01A-12D-A24Q-01	TCGA-EB-A430-01A-11D-A24Q-01	TCGA-ER-A194-01A-11D-A191-01	TCGA-ER-A196-01A-11D-A191-01	TCGA-ER-A19K-01A-21D-A191-01	TCGA-ER-A19T-01A-11D-A192-01	TCGA-ER-A2NB-01A-12D-A194-01	TCGA-ER-A2NF-01A-11D-A192-01	TCGA-ER-A42H-01A-11D-A24Q-01	TCGA-FR-A2OS-01A-11D-A219-01	TCGA-FR-A3R1-01A-11D-A238-01	TCGA-FS-A1ZN-01A-11D-A191-01	TCGA-GF-A2C7-01A-11D-A191-01	TCGA-GN-A263-01A-11D-A194-01	TCGA-GN-A269-01A-11D-A192-01	TCGA-GN-A26C-01A-11D-A192-01	TCGA-HR-A2OG-01A-21D-A191-01	TCGA-HR-A2OH-01A-11D-A191-01	TCGA-IH-A3EA-01A-11D-A20B-01	
Amplification Peak 1	5p15.33	chr5:1287704-1322086(probes 469832:469845)          	chr5:1288020-1321872(probes 469833:469844)        	chr5:1-1325766(probes 469780:469847)               	0.11571	 0.11571		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	1	0	0	0	1	2	0	2	1	0	1	0	2	0	0	0	2	0	1	0	0	0	2	0	0	0	0	1	1	0	2	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 2	8q24.3 	chr8:118595987-146364022(probes 812888:829812)  	chr8:140056946-140704244(probes 828105:828682)	chr8:134084433-146364022(probes 823568:829812)	0.11571	 0.11571		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	0	1	2	0	0	0	0	2	1	1	1	2	0	0	1	0	0	0	1	1	0	0	0	1	1	0	0	1	0	2	1	2	2	2	0	2	1	0	0	0	0	1	1	
Amplification Peak 3	11q14.1	chr11:76108797-79057899(probes 1018713:1020511)  	chr11:77788015-77864178(probes 1019587:1019623)	chr11:76109291-79058594(probes 1018714:1020513)	0.11571	 0.11571		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	2	0	2	1	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 4	13q31.3	chr13:88479949-114981573(probes 1169746:1186710)	chr13:91525123-92058001(probes 1171459:1171808)	chr13:90237032-93314967(probes 1170650:1172617)	0.11571	 0.11571		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	1	0	0	0	0	1	2	1	2	0	1	1	1	1	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	
Deletion Peak  1	1p22.1  	chr1:65987206-120192763(probes 35197:67626)        	chr1:92971829-93262020(probes 51629:51746)          	chr1:93105512-93112961(probes 51688:51689)          	0.060396	   0.060396		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	1	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	
Deletion Peak  2	1q41    	chr1:1-249250621(probes 1:129197)                   	chr1:223706935-224454782(probes 114052:114407)    	chr1:223837567-223838771(probes 114066:114067)    	0.25045	    0.25232		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	
Deletion Peak  3	4q34.3  	chr4:1-191154276(probes 366986:469779)              	chr4:183059397-183091269(probes 467359:467385)    	chr4:183061010-183067669(probes 467363:467364)    	0.24454	    0.25232		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	1	1	1	0	0	0	0	1	0	1	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	
Deletion Peak  4	5q31.3  	chr5:133443951-153197695(probes 541667:553716)    	chr5:143185948-143205380(probes 547197:547204)    	chr5:143193409-143198927(probes 547201:547202)    	0.027952	   0.028586		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	0	1	0	0	0	1	1	1	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	1	1	0	1	1	0	
Deletion Peak  5	6q14.1  	chr6:57206295-143365537(probes 604251:650343)      	chr6:80622422-80753093(probes 614263:614347)        	chr6:80598940-80821977(probes 614235:614389)        	0.11212	    0.11097		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	1	1	0	0	1	0	1	1	0	0	1	0	0	1	1	0	0	1	1	0	0	0	0	0	1	1	0	0	1	1	1	1	0	0	0	1	0	0	0	1	0	1	
Deletion Peak  6	6q27    	chr6:107466778-171115067(probes 629289:666868)    	chr6:166821252-167044078(probes 665507:665697)    	chr6:148847006-171115067(probes 653927:666868)    	0.010046	   0.087027		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	1	0	1	0	0	1	0	1	1	0	0	1	0	0	1	1	1	0	1	1	1	0	0	0	1	1	0	0	0	1	1	1	1	0	0	1	0	0	0	0	1	0	1	
Deletion Peak  7	6q27    	chr6:168330211-170618145(probes 666081:666681)    	chr6:170100654-170548720(probes 666615:666653)    	chr6:148847006-171115067(probes 653927:666868)    	0.00016862	   0.043601		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	1	0	1	0	0	1	0	1	1	0	0	1	0	0	1	1	1	0	1	1	1	0	0	0	1	1	0	0	0	1	1	1	1	0	0	1	0	0	0	0	1	0	1	
Deletion Peak  8	9p24.2  	chr9:1-14611365(probes 829813:837610)                 	chr9:4487542-4591654(probes 832475:832526)            	chr9:4571879-4573298(probes 832501:832502)            	0.0811	    0.23207		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	0	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	1	0	1	1	0	0	0	1	1	0	1	1	0	0	1	1	0	0	1	1	0	
Deletion Peak  9	9p21.3  	chr9:21865498-21996995(probes 843255:843317)        	chr9:21959052-21977193(probes 843305:843306)        	chr9:21223525-26878373(probes 842856:846241)        	8.6015e-25	 1.5106e-24		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	0	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	0	0	0	1	0	1	1	0	1	1	1	0	0	1	1	0	
Deletion Peak 10	10p15.3 	chr10:1-20866851(probes 897869:912493)               	chr10:1-936102(probes 897869:898056)                   	chr10:1-872172(probes 897869:898025)                   	0.23423	    0.23423		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	0	1	0	1	1	1	1	0	1	0	1	1	1	1	1	1	1	0	1	1	0	0	0	1	1	0	0	1	0	1	1	0	1	1	0	1	1	0	0	0	1	1	0	
Deletion Peak 11	10q23.31	chr10:89617158-90034038(probes 950074:950504)      	chr10:89617402-89735596(probes 950075:950263)      	chr10:89556245-89716253(probes 950041:950213)      	3.3823e-09	 3.3823e-09		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	0	0	0	1	1	0	0	0	0	1	0	1	1	0	1	1	0	0	0	1	1	0	
Deletion Peak 12	11q24.3 	chr11:126870419-135006516(probes 1051221:1056061)	chr11:128326464-128395332(probes 1052265:1052473)	chr11:95039415-135006516(probes 1030104:1056061)  	2.189e-06	  2.189e-06		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	1	0	1	0	1	0	1	0	0	1	1	0	1	1	1	0	0	0	1	1	0	1	0	1	1	1	0	0	1	1	1	0	0	1	0	1	0	0	0	0	1	0	
Deletion Peak 13	12q24.32	chr12:107709151-133851895(probes 1116569:1130039)	chr12:126440969-131363915(probes 1127277:1129350)	chr12:122671473-133851895(probes 1125227:1130039)	0.086624	   0.087027		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	1	1	0	0	1	1	1	0	1	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	
Deletion Peak 14	15q15.1 	chr15:27995514-76562737(probes 1238796:1266019)    	chr15:41781066-42567641(probes 1245151:1245565)    	chr15:28492196-46325985(probes 1238873:1247200)    	0.00055824	 0.00056142		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	1	1	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	1	1	
Deletion Peak 15	16q23.3 	chr16:79631620-90354753(probes 1315333:1321550)    	chr16:83979992-84010143(probes 1319061:1319068)    	chr16:83989995-83997440(probes 1319065:1319066)    	0.21177	    0.21502		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	1	0	0	1	1	0	1	1	0	0	1	0	0	0	0	0	0	1	1	0	0	1	0	0	1	1	1	0	1	1	0	0	0	0	0	1	0	1	0	0	0	0	
Deletion Peak 16	22q12.1 	chr22:22120154-40735614(probes 1483873:1494385)    	chr22:29276121-29455701(probes 1487464:1487595)    	chr22:29379558-29381376(probes 1487530:1487531)    	0.22462	    0.21502		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 1 - CN values	5p15.33	chr5:1287704-1322086(probes 469832:469845)          	chr5:1288020-1321872(probes 469833:469844)        	chr5:1-1325766(probes 469780:469847)               	0.11571	 0.11571		Actual Copy Change Given	-0.025483	-0.052027	0.020203	-0.023957	0.33097	0.0040243	-0.0082276	0.016824	0.13717	3.6569	-0.00024171	2.3313	0.63719	0.026654	0.10176	0.0034687	1.251	0.058509	-0.72062	0.073546	0.99405	0.0033299	0.5877	0.015299	-0.0030475	0.040399	2.8393	0.081177	0.045861	0.010424	-0.0081165	0.53415	0.50439	-0.036276	1.592	-0.0016629	-0.006505	0	0.0041632	0.0558	0.023286	-0.0069195	-0.0088526	-0.28537	-0.13514	-0.015604	
Amplification Peak 2 - CN values	8q24.3 	chr8:118595987-146364022(probes 812888:829812)  	chr8:140056946-140704244(probes 828105:828682)	chr8:134084433-146364022(probes 823568:829812)	0.11571	 0.11571		Actual Copy Change Given	0.018943	1.6627	0.020903	-0.047359	0.89835	1.4899	-0.31832	0.010682	-0.19387	0.071992	1.9958	0.65866	0.85799	0.37068	1.9666	0.0015255	0.0066653	0.262	-0.29183	0	0.00041593	0.69708	0.54823	0.016697	-0.00069303	-0.62536	0.74455	0.88086	-0.020813	0.007722	0.55904	-0.0062286	1.5514	0.19131	1.0955	1.0268	1.6523	-0.0048461	0.90674	0.78864	0.0054139	-0.0019399	-0.005814	0	0.51639	0.63463	
Amplification Peak 3 - CN values	11q14.1	chr11:76108797-79057899(probes 1018713:1020511)  	chr11:77788015-77864178(probes 1019587:1019623)	chr11:76109291-79058594(probes 1018714:1020513)	0.11571	 0.11571		Actual Copy Change Given	0.68122	-0.016154	-0.12132	-0.023018	0.30942	0.010424	-0.28715	0.017663	-0.29201	-0.0041295	-0.71506	0.003191	0.0037465	0.058081	-0.77481	-0.0033243	-0.00041585	-0.501	0.095006	-0.086651	0.0048579	0.041883	-0.82271	-0.53734	0.0084811	2.0867	2.8997	0.014609	-0.47384	-0.034223	0.0031261	0.00083195	3.6569	-0.14658	1.0611	0.39645	0	0.0034687	-0.0023553	-0.6449	-0.0043857	0.0066653	-0.018628	-0.010605	-0.36261	-0.0081624	
Amplification Peak 4 - CN values	13q31.3	chr13:88479949-114981573(probes 1169746:1186710)	chr13:91525123-92058001(probes 1171459:1171808)	chr13:90237032-93314967(probes 1170650:1172617)	0.11571	 0.11571		Actual Copy Change Given	0.023145	-0.0042929	-0.016017	0.2087	-0.44832	-0.042034	-0.0012627	-0.010391	0.6956	1.2005	0.73397	1.1766	-0.00069303	0.59656	0.51874	0.71152	0.69341	-0.47902	-0.44776	-0.020275	3.6569	-0.033269	-0.070041	-0.49392	0.0029133	1.4492	-0.020001	0.022164	-0.22612	0.020763	-0.0098254	-0.0081624	-0.61508	-0.030114	-0.00098654	0.13184	-0.0044312	0	0.0040243	-0.012851	-0.0029091	0.23225	-0.40245	0.29406	0.089851	0.036088	
Deletion Peak  1 - CN values	1p22.1  	chr1:65987206-120192763(probes 35197:67626)        	chr1:92971829-93262020(probes 51629:51746)          	chr1:93105512-93112961(probes 51688:51689)          	0.060396	   0.060396		Actual Copy Change Given	-0.84459	0.006904	0	-0.012162	0.42172	-0.0039321	0.015391	-0.29209	-0.18232	0.22811	-0.0081624	-0.072844	0.0090312	-0.80075	-0.30757	0.13984	-0.70675	0.27695	0.13222	0.039967	-0.027124	0.0065262	-0.1319	-0.52931	0.86572	0.001181	0.015814	0.021884	-0.0024825	-0.0063668	0.0076392	0.0037465	-0.64603	0.1907	-0.0044476	0	0.00097064	0.004719	-0.0056757	0.017684	-0.00055444	0.010339	0.24731	0.26435	-0.34903	0.0038428	
Deletion Peak  2 - CN values	1q41    	chr1:1-249250621(probes 1:129197)                   	chr1:223706935-224454782(probes 114052:114407)    	chr1:223837567-223838771(probes 114066:114067)    	0.25045	    0.25232		Actual Copy Change Given	0.011539	0.006109	0	1.403	-0.31338	0	0.02524	0.57538	0.31306	-0.33362	0.69858	-0.03681	0.0090312	0.072253	0.49969	0.13984	-0.00069303	0.26828	0.11852	0.1158	0.0020612	0.0065262	-0.4529	0.54152	0.7938	-0.81937	0.015814	-0.87977	0.003619	-0.0063668	0.006126	0.0037465	0.9015	0.62495	0.545	0.78929	-0.0011559	0.004719	0.83982	0.67682	-0.00055444	0.010339	0.27546	0.26435	0.3227	-0.73433	
Deletion Peak  3 - CN values	4q34.3  	chr4:1-191154276(probes 366986:469779)              	chr4:183059397-183091269(probes 467359:467385)    	chr4:183061010-183067669(probes 467363:467364)    	0.24454	    0.25232		Actual Copy Change Given	-0.81196	0.010842	-0.00055444	0.0093098	-0.15793	0.016705	0.010146	0.010125	-0.31235	0.0078035	-0.016704	-0.013395	-0.015879	-0.50764	0.049682	-0.0123	-0.71444	-0.51115	-1.072	0.013074	0.53854	0.019363	0.082577	-0.57931	-0.0078863	-0.6515	0.0020805	0.048404	-0.58962	-0.62102	-0.0060904	-0.010784	-0.62198	0.27457	-0.038985	1.0625	-0.0090247	-0.0085766	0.022725	-0.030193	0.0029133	-0.026304	0.013353	0.011958	-0.11768	-0.017941	
Deletion Peak  4 - CN values	5q31.3  	chr5:133443951-153197695(probes 541667:553716)    	chr5:143185948-143205380(probes 547197:547204)    	chr5:143193409-143198927(probes 547201:547202)    	0.027952	   0.028586		Actual Copy Change Given	0.036229	0.003191	-0.22502	-0.0059522	0.35582	-0.76484	0.00458	-0.0014062	0.13717	-0.88192	-0.68833	-0.69534	-0.010094	-0.15144	0.1345	0.0034687	0.0075	0.058509	-0.684	0.073546	0.0012481	-0.72809	-0.051762	-0.0044392	-0.0030475	0.011751	-0.029994	-0.019389	0.045861	0.012097	-0.27488	-0.58166	0.40964	-0.036276	0.0012317	-0.90646	-0.006505	0	-0.0034953	-0.0047079	-0.48418	-0.35074	-0.0088526	-0.28537	-0.12395	0.013213	
Deletion Peak  5 - CN values	6q14.1  	chr6:57206295-143365537(probes 604251:650343)      	chr6:80622422-80753093(probes 614263:614347)        	chr6:80598940-80821977(probes 614235:614389)        	0.11212	    0.11097		Actual Copy Change Given	-0.83841	-0.94056	0.054518	-0.10697	-0.34511	-0.76604	0.018622	-0.012183	-0.45896	0.20873	-0.36056	-0.13238	-0.0096806	0.085365	-0.78656	-0.012438	0.012237	-0.46557	-0.3028	-0.064106	-0.0031859	-0.33422	-0.59811	-0.026175	-0.0098185	-0.0079531	-0.040209	-0.014366	-0.61527	-0.62131	0	-0.0067813	-0.6314	-0.45223	-0.56347	-0.9177	-0.011201	-0.0056757	-0.00055513	-0.78791	0.0049969	0.32963	-0.0087146	-0.57674	-0.029721	-0.69188	
Deletion Peak  6 - CN values	6q27    	chr6:107466778-171115067(probes 629289:666868)    	chr6:166821252-167044078(probes 665507:665697)    	chr6:148847006-171115067(probes 653927:666868)    	0.010046	   0.087027		Actual Copy Change Given	0.0083351	-0.94056	0.054518	-0.75528	0.13796	-0.76853	0.018622	0.035785	-0.46503	0.22996	-0.36056	-0.13238	-0.0096806	0.085365	-0.78656	-0.012438	0.012237	-0.46557	-0.30551	-0.1964	-0.0031859	-0.33422	-0.61271	-0.529	-0.0098185	0.011472	-0.065313	-0.89458	-0.61527	0.0093541	-0.0067813	-0.0067813	-0.66624	-0.46367	-0.57932	-0.91642	0.00458	-0.0033243	-0.93386	-0.051607	0.0049969	0.32963	-0.021814	-0.28335	-0.029721	-0.74393	
Deletion Peak  7 - CN values	6q27    	chr6:168330211-170618145(probes 666081:666681)    	chr6:170100654-170548720(probes 666615:666653)    	chr6:148847006-171115067(probes 653927:666868)    	0.00016862	   0.043601		Actual Copy Change Given	0.0083351	-1.2929	0.054518	-0.77513	0.13796	-0.77524	0.030029	0.035785	-0.46503	0.22996	-0.36056	-0.13238	-0.0096806	0.085365	-1.2929	-0.012438	0.012237	-0.46557	-0.30551	-0.1964	-0.0031859	-0.33422	-0.61271	-0.529	-0.0098185	0.011472	-0.065313	-0.89458	-0.61527	0.0093541	-0.0067813	-0.0067813	-0.66624	-0.46367	-0.57932	-0.91642	0.00458	-0.0033243	-0.93386	-0.033541	0.0049969	0.32963	-0.021814	-0.30193	-0.029721	-0.74393	
Deletion Peak  8 - CN values	9p24.2  	chr9:1-14611365(probes 829813:837610)                 	chr9:4487542-4591654(probes 832475:832526)            	chr9:4571879-4573298(probes 832501:832502)            	0.0811	    0.23207		Actual Copy Change Given	-0.83873	-0.40317	-0.19812	-0.73091	0.051006	-0.77414	-0.67453	-0.88809	-0.3337	0.063821	-0.72101	-0.82105	0	-0.81211	-0.7674	-0.59312	-0.7164	-0.52102	-1.0912	-0.11861	-0.20806	-0.69721	-0.61971	-0.035476	-0.92681	-0.84663	-0.01354	-0.87907	-0.20609	0.0069435	0.0034687	-0.0057483	-1.2929	-0.20636	0.54857	-0.89527	-0.69486	0.0016642	0.01014	-0.77022	-0.501	-0.0018014	0.79045	-0.28501	-0.34412	0.0083351	
Deletion Peak  9 - CN values	9p21.3  	chr9:21865498-21996995(probes 843255:843317)        	chr9:21959052-21977193(probes 843305:843306)        	chr9:21223525-26878373(probes 842856:846241)        	8.6015e-25	 1.5106e-24		Actual Copy Change Given	-0.83001	-0.39575	-0.4934	-1.2929	0.051006	-1.2929	-0.67453	-0.8727	-0.3337	-0.87952	-1.2929	-1.2929	0	-1.2929	-0.7674	-1.2929	-1.2929	-0.50784	-1.2929	-0.11861	-0.20806	-1.2929	-0.61357	-0.035476	-0.88905	-0.8233	-1.2929	-1.2929	-0.20609	-0.62093	0.0034687	-0.0057483	-0.064093	-0.20636	0.54857	-0.89527	-0.69486	0.0016642	-1.2929	-0.77022	-0.501	-0.0018014	-0.0016629	-1.0617	-0.76792	0.0083351	
Deletion Peak 10 - CN values	10p15.3 	chr10:1-20866851(probes 897869:912493)               	chr10:1-936102(probes 897869:898056)                   	chr10:1-872172(probes 897869:898025)                   	0.23423	    0.23423		Actual Copy Change Given	-0.86947	-0.41003	-0.19375	-0.019589	-0.13648	0.029466	-0.6825	-0.89948	-0.97253	-0.4715	-0.079476	-0.8079	-0.0060904	-0.56077	-0.31354	-0.18421	-0.72403	-0.51187	-0.69892	-0.18949	0.0091705	-0.70585	-0.15148	0.0091624	0.014749	0.001181	-0.84515	-0.87907	0.011969	-0.015329	-0.3031	-0.0062841	-0.11574	-0.14782	-0.0037558	-0.49882	-0.69595	-0.012197	-0.92614	-0.77643	-0.013127	0.0064275	0.099288	-0.59429	-0.36771	-0.062092	
Deletion Peak 11 - CN values	10q23.31	chr10:89617158-90034038(probes 950074:950504)      	chr10:89617402-89735596(probes 950075:950263)      	chr10:89556245-89716253(probes 950041:950213)      	3.3823e-09	 3.3823e-09		Actual Copy Change Given	-0.83397	-0.070135	-0.19375	-0.019589	-0.13247	-0.74994	-0.6825	-0.87962	-0.46291	-0.50873	-0.4342	-1.2856	-0.010369	-0.80584	-0.77541	-0.18421	-0.72403	-0.51187	-0.68491	-0.18949	-0.57457	-1.121	-0.61258	0.0091624	0.012655	0.001181	0.0016642	-0.86986	-0.63101	-0.00041585	0.013832	0.0062481	0.26012	-0.14413	-0.0037558	-0.49882	-0.69215	-0.0013858	-0.68642	-0.77643	0	0.0027745	0.099288	-0.59429	-0.36771	-0.0024938	
Deletion Peak 12 - CN values	11q24.3 	chr11:126870419-135006516(probes 1051221:1056061)	chr11:128326464-128395332(probes 1052265:1052473)	chr11:95039415-135006516(probes 1030104:1056061)  	2.189e-06	  2.189e-06		Actual Copy Change Given	-0.84195	-0.016154	0.023005	-0.047936	-0.57601	0.011818	-0.28715	0.017943	-0.29201	0.0064123	-0.71506	0.003191	-0.01826	-0.80766	-0.77481	-0.0033243	-0.72835	-0.501	-0.70212	-0.086651	0.0048579	0.041883	-0.82018	-0.54889	0.019363	-0.84535	0.71942	-0.87934	-0.47384	-0.64911	0.0031261	0.00083195	-1.262	-0.14679	-0.60043	0.39645	0	-0.69918	-0.0023553	-0.6449	0.0056919	0.0066653	-0.019792	0.00089461	-0.36261	-0.0081624	
Deletion Peak 13 - CN values	12q24.32	chr12:107709151-133851895(probes 1116569:1130039)	chr12:126440969-131363915(probes 1127277:1129350)	chr12:122671473-133851895(probes 1125227:1130039)	0.086624	   0.087027		Actual Copy Change Given	-0.87143	0.0058309	0.0022193	0.00041593	0.012281	-0.0062286	0.2609	-0.077018	-0.33813	-0.34352	-0.0016629	0.015587	-0.73487	-0.81488	-0.3085	0	-0.73635	-0.054016	0	-0.085324	-0.61201	-0.0008316	-0.34323	-0.00022535	0.031859	0	0.0080567	-0.85979	0.0016756	-0.01292	-0.00013862	-0.00055444	0.37874	-0.082678	0.00095425	-0.0012473	0.0055529	-0.01106	-0.0030475	0.0066653	-0.00013862	0.00083195	-0.036418	-0.015008	-0.13212	0	
Deletion Peak 14 - CN values	15q15.1 	chr15:27995514-76562737(probes 1238796:1266019)    	chr15:41781066-42567641(probes 1245151:1245565)    	chr15:28492196-46325985(probes 1238873:1247200)    	0.00055824	 0.00056142		Actual Copy Change Given	-0.011198	-0.0033243	-0.056307	-0.027535	-0.55504	0.029606	0.91016	0.046821	0.0076392	0.026118	0.055658	0.061651	0.015866	0.045566	-0.2939	0.008892	0	-0.01409	-0.67825	-0.088772	0.0048156	-0.6945	0.039153	0.0059619	0.012097	-0.0011757	-0.81367	-0.84467	0.14653	-0.018765	-0.00027724	0.010842	-0.66457	-0.43714	-0.0077645	-0.8824	0.023267	0.0072217	0.0041632	0.049398	0.0019418	0.013772	-0.036401	0.26765	-0.36011	-0.71906	
Deletion Peak 15 - CN values	16q23.3 	chr16:79631620-90354753(probes 1315333:1321550)    	chr16:83979992-84010143(probes 1319061:1319068)    	chr16:83989995-83997440(probes 1319065:1319066)    	0.21177	    0.21502		Actual Copy Change Given	-0.062226	-0.028901	-0.15311	-0.045228	-0.57789	0.035242	-0.013264	-0.89879	-0.89977	0.02921	-0.7055	-0.51022	0.28438	-0.031632	-0.31342	0.0056919	0.0114	0	0.013428	0.010564	0.0084743	-0.71203	-0.50524	-0.056854	0.039337	-0.84151	0.01988	0.95345	-0.64939	-0.64978	-0.17132	0.0036076	-0.65993	-0.23326	-0.015208	0.027497	0.03031	0.00055459	0.0052749	-0.79294	-0.0067813	-0.33776	-0.042788	0.26891	0.055085	-0.030962	
Deletion Peak 16 - CN values	22q12.1 	chr22:22120154-40735614(probes 1483873:1494385)    	chr22:29276121-29455701(probes 1487464:1487595)    	chr22:29379558-29381376(probes 1487530:1487531)    	0.22462	    0.21502		Actual Copy Change Given	-0.11312	-0.01849	0.018243	-0.050235	0.52438	-0.72756	-0.0091286	0.062058	-0.16637	0.011146	0.08392	0.075847	0.29862	0.03369	0.14325	-0.016841	-0.0096806	0.0068044	0.099512	0.11184	0.41865	0.053806	-0.61885	-0.013272	-0.85559	-0.84183	0.056228	-0.10841	0.032434	-0.046583	0.010285	-0.56898	-0.15055	-0.44847	0.5268	0.071248	0.022972	0.0016642	-0.0078863	0.065245	-0.0031859	0.012934	0.69839	-0.02857	0.2749	0.62424	
