| GDAC_clinicalDataPicker1 stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/SKCM-All_Samples/3154344/0.GDAC_clinicalDataMerger.Finished/SKCM-All_Samples.clin.merged.txt |
| GDAC_clinicalDataPicker1 selectFile | file:/xchip/cga2/jcho/clinicalData/selectionFile/selectionFiles/stage3_params_clin_skcm_TM.tsv |
| GDAC_clinicalDataPicker1 nodeColumn | 1 |
| GDAC_clinicalDataPicker1 outPrefix | SKCM-All_Samples |
| Execution Times: | |
| Submitted: | 10:30:47 06-05-13 |
| Completed: | |
| Elapsed: | 00 hrs 00 mins 59 secs |
step 1. GDAC_clinicalDataPicker [id: 399702] Picks out the clinical paramters of interest
urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:33
| stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/SKCM-All_Samples/3154344/0.GDAC_clinicalDataMerger.Finished/SKCM-All_Samples.clin.merged.txt |
| selectFile | file:/xchip/cga2/jcho/clinicalData/selectionFile/selectionFiles/stage3_params_clin_skcm_TM.tsv |
| nodeColumn | 1 |
| outPrefix | SKCM-All_Samples |
| Output Files: | |
| stage3_params_clin_selection_SKCM-All_Samples.tsv | |
| SKCM-All_Samples.clin.merged.picked.txt | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 10:30:53 06-05-13 |
| Completed: | 10:31:23 06-05-13 |
| Elapsed: | 00 hrs 00 mins 30 secs |
step 2. GDAC_clinicalDataPickerReport [id: 399703] Clinical data report
urn:lsid:broadinstitute.org:cancer.genome.analysis:00330:50
| picked | SKCM-All_Samples.clin.merged.picked.txt |
| Execution Times: | |
| Submitted: | 10:30:53 06-05-13 |
| Completed: | 10:31:45 06-05-13 |
| Elapsed: | 00 hrs 00 mins 52 secs |