
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.48.4103/CNV2ClinicalAnalysis_nozzle_onlysig_focal.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.48.4103/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/404302/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/SKCM-All_Samples/3215655/SKCM-All_Samples.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SKCM-All_Samples", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"                  "-oT=SKCM-All_Samples"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=211, in cluster file=288, common to both=202
[1]  51 202
[1] "Amp Peak  1(1p12) mutation analysis"
[1] 3
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         59                         143 
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         59                         143 
[1] "Amp Peak  2(1q44) mutation analysis"
[1] 3
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                        106                          96 
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                        106                          96 
[1] "Amp Peak  3(3p13) mutation analysis"
[1] 3
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                         47                         155 
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                         47                         155 
[1] "Amp Peak  4(4q12) mutation analysis"
[1] 3
  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                         33                         169 
  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                         33                         169 
[1] "Amp Peak  5(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            53                            149 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            53                            149 
[1] "Amp Peak  6(5q35.3) mutation analysis"
[1] 3
  AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE 
                           24                           178 
  AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE 
                           24                           178 
[1] "Amp Peak  7(6p25.1) mutation analysis"
[1] 3
  AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE 
                          113                            89 
  AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE 
                          113                            89 
[1] "Amp Peak  8(6q12) mutation analysis"
[1] 3
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         39                         163 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         39                         163 
[1] "Amp Peak  9(7p22.3) mutation analysis"
[1] 3
  AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE 
                          111                            91 
  AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE 
                          111                            91 
[1] "Amp Peak 10(7q34) mutation analysis"
[1] 3
  AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE 
                        118                          84 
  AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE 
                        118                          84 
[1] "Amp Peak 11(8q11.22) mutation analysis"
[1] 3
  AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE 
                            83                            119 
  AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE 
                            83                            119 
[1] "Amp Peak 12(8q24.3) mutation analysis"
[1] 3
  AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE 
                           97                           105 
  AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE 
                           97                           105 
[1] "Amp Peak 13(9p24.1) mutation analysis"
[1] 3
  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                           14                           188 
  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                           14                           188 
[1] "Amp Peak 14(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                            30                            172 
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                            30                            172 
[1] "Amp Peak 15(11q13.4) mutation analysis"
[1] 3
  AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE 
                            29                            173 
  AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE 
                            29                            173 
[1] "Amp Peak 16(12q15) mutation analysis"
[1] 3
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          26                          176 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          26                          176 
[1] "Amp Peak 17(13q31.3) mutation analysis"
[1] 3
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                            53                            149 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                            53                            149 
[1] "Amp Peak 18(15q24.3) mutation analysis"
[1] 3
  AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE 
                            60                            142 
  AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE 
                            60                            142 
[1] "Amp Peak 19(17q25.3) mutation analysis"
[1] 3
  AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE 
                            70                            132 
  AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE 
                            70                            132 
[1] "Amp Peak 20(19p13.2) mutation analysis"
[1] 3
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            38                            164 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            38                            164 
[1] "Amp Peak 21(20q13.2) mutation analysis"
[1] 3
  AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE 
                           102                            100 
  AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE 
                           102                            100 
[1] "Amp Peak 22(22q13.2) mutation analysis"
[1] 3
  AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE 
                            88                            114 
  AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE 
                            88                            114 
[1] "Del Peak  1(1p36.31) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            54                            148 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            54                            148 
[1] "Del Peak  2(1p22.1) mutation analysis"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           53                           149 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           53                           149 
[1] "Del Peak  3(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           48                           154 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           48                           154 
[1] "Del Peak  4(3p26.1) mutation analysis"
[1] 3
  DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE 
                           30                           172 
  DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE 
                           30                           172 
[1] "Del Peak  5(3q23) mutation analysis"
[1] 3
  DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE 
                         25                         177 
  DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE 
                         25                         177 
[1] "Del Peak  6(4p16.3) mutation analysis"
[1] 3
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                           41                           161 
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                           41                           161 
[1] "Del Peak  7(4q34.3) mutation analysis"
[1] 3
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           53                           149 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           53                           149 
[1] "Del Peak  8(5q11.2) mutation analysis"
[1] 3
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                           60                           142 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                           60                           142 
[1] "Del Peak  9(5q31.3) mutation analysis"
[1] 3
  DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE 
                           78                           124 
  DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE 
                           78                           124 
[1] "Del Peak 10(6q16.3) mutation analysis"
[1] 3
  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                          112                            90 
  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                          112                            90 
[1] "Del Peak 11(6q26) mutation analysis"
[1] 3
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                        117                          85 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                        117                          85 
[1] "Del Peak 12(6q27) mutation analysis"
[1] 3
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                        116                          86 
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                        116                          86 
[1] "Del Peak 13(8p23.3) mutation analysis"
[1] 3
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                           51                           151 
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                           51                           151 
[1] "Del Peak 14(9p23) mutation analysis"
[1] 3
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                        141                          61 
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                        141                          61 
[1] "Del Peak 15(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                          160                            42 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                          160                            42 
[1] "Del Peak 16(10p15.3) mutation analysis"
[1] 3
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                           109                             93 
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                           109                             93 
[1] "Del Peak 17(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                            126                              76 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                            126                              76 
[1] "Del Peak 18(10q26.3) mutation analysis"
[1] 3
  DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE 
                           126                             76 
  DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE 
                           126                             76 
[1] "Del Peak 19(11q23.3) mutation analysis"
[1] 3
  DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE 
                           115                             87 
  DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE 
                           115                             87 
[1] "Del Peak 20(12q24.33) mutation analysis"
[1] 3
  DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE 
                             47                             155 
  DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE 
                             47                             155 
[1] "Del Peak 21(13q34) mutation analysis"
[1] 3
  DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE 
                          47                          155 
  DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE 
                          47                          155 
[1] "Del Peak 22(14q32.2) mutation analysis"
[1] 3
  DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE 
                            66                            136 
  DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE 
                            66                            136 
[1] "Del Peak 23(15q13.3) mutation analysis"
[1] 3
  DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE 
                            45                            157 
  DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE 
                            45                            157 
[1] "Del Peak 24(15q15.1) mutation analysis"
[1] 3
  DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE 
                            48                            154 
  DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE 
                            48                            154 
[1] "Del Peak 25(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                            35                            167 
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                            35                            167 
[1] "Del Peak 26(16q12.1) mutation analysis"
[1] 3
  DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE 
                            66                            136 
  DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE 
                            66                            136 
[1] "Del Peak 27(16q24.3) mutation analysis"
[1] 3
  DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE 
                            71                            131 
  DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE 
                            71                            131 
[1] "Del Peak 28(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE 
                            61                            141 
  DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE 
                            61                            141 
[1] "Del Peak 29(22q12.1) mutation analysis"
[1] 3
  DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE 
                            28                            174 
  DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE 
                            28                            174 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "DAYSTOSUBMITTEDSPECIMENDX"             
 [5] "VITALSTATUS"                           
 [6] "DCCUPLOADDATE"                         
 [7] "PRIMARYSITEOFDESEASE"                  
 [8] "GENDER"                                
 [9] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[10] "RADIATIONTHERAPY"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "DISTANT.METASTASIS"                    
[13] "LYMPH.NODE.METASTASIS"                 
[14] "TUMOR.STAGECODE"                       
[15] "NEOPLASM.DISEASESTAGE"                 
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 202 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
          NA           NA           NA         3004           NA           NA 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
          NA           NA           NA           NA          939           NA 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
          NA         1390           NA           NA           NA          164 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A1X3 TCGA-D9-A3Z1 
          NA           NA           NA           NA           NA          122 
TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
          87          118         1484           NA         1555           NA 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
        1192           NA           NA         1354         1116           NA 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
          NA          680           NA          589           NA          534 
TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A299 TCGA-EB-A3HV 
         451           16           13           41           NA           39 
TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XD TCGA-EB-A3XE TCGA-EB-A3XF TCGA-EB-A3Y6 
          36            9           NA           NA            4           16 
TCGA-EB-A3Y7 TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EB-A430 
          NA            8            3            6           12           NA 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
        1097          156           NA           NA         1155           NA 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
        1175          134           NA          825           NA          366 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
         247          269          304          197           NA           NA 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
          NA          769          727           NA          272           NA 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
          NA           NA           NA           NA           NA           NA 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A19O TCGA-ER-A1A1 TCGA-ER-A3ET 
          NA           NA         1303           NA         2386          200 
TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A3YO TCGA-FR-A44A 
          52           NA          307          181           NA         2195 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1ZN TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
          NA           NA           NA           NA         1637           NA 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-FW-A3TV 
         328          195            6           31            4           NA 
TCGA-GF-A2C7 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A265 
          NA           NA          756           NA           NA         2577 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C 
          NA           NA           NA           NA           NA           NA 
TCGA-GN-A26D TCGA-HR-A2OG TCGA-HR-A2OH TCGA-IH-A3EA 
         447           NA           NA          383 
Variable 1:'AGE':	nDistinctValues=67,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=51,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=57,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOSUBMITTEDSPECIMENDX':	nDistinctValues=88,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 6:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=27,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DISTANT.METASTASIS':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'LYMPH.NODE.METASTASIS':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGECODE':	nDistinctValues=15,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NEOPLASM.DISEASESTAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "PRIMARY.SITE.OF.DISEASE"               
[3] "GENDER"                                
[4] "RADIATIONS.RADIATION.REGIMENINDICATION"
[5] "DISTANT.METASTASIS"                    
[6] "LYMPH.NODE.METASTASIS"                 
[7] "TUMOR.STAGECODE"                       
[8] "NEOPLASM.DISEASESTAGE"                 
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 T0  T1 T1A T1B  T2 T2A T2B  T3 T3A T3B  T4 T4A T4B TIS  TX 
  6   4  14   3  18  17   6   4  24  14   6   8  49   1  12 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 202 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=67, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=4, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
DISTANT.METASTASIS, nv=5, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=10, binary=FALSE, numeric=FALSE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=13, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p12) mutation analysis
D1V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  1(1P12) MUTATED   14 20
  AMP PEAK  1(1P12) WILD-TYPE 45 35
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         34                          80 
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         20                          35 
$`AMP PEAK  1(1P12) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       16.47        10.26        11.41         9.30         4.01         2.86 
TCGA-DA-A3F3 TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A41A TCGA-EE-A181 TCGA-EE-A183 
        7.00         1.18         0.30         0.26         1.12        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L 
        4.27        36.07        37.97        11.15        38.63         1.08 
TCGA-EE-A29M TCGA-EE-A29V TCGA-EE-A29X TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A3ET 
       27.12         2.43         8.09         3.52        12.99         6.58 
TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-GN-A264 
        1.71         5.95        72.16         3.22         0.20        31.33 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26C 
       10.09        16.21        12.16        24.00 

$`AMP PEAK  1(1P12) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 
       32.55        70.16        98.76        28.08        22.55         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
       21.14        30.87         6.35        15.25        45.70        13.32 
TCGA-D3-A3CF TCGA-D3-A3MV TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       24.00         5.39         3.88        48.79        35.80        51.12 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       10.03        39.19        13.68         9.99        44.52        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F5 
       25.15         4.93        22.36         6.64        19.36        17.56 
TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XF 
       14.83         0.53         0.43         1.35         1.28         0.13 
TCGA-EB-A3Y6 TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A17Z 
        0.53         0.10         0.20         0.39        11.57         6.31 
TCGA-EE-A182 TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29H TCGA-EE-A29N 
        1.35         5.13         8.81         7.96         4.41         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A2A0 
       12.03         8.12         8.84         9.99         6.48        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J 
       25.28        23.90         9.67         8.94        11.11         4.18 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FS-A1ZN 
       28.64        42.84        78.44        12.10        10.09        24.00 
TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU 
        8.81        53.82        10.78         6.41         1.02         0.13 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A265 TCGA-GN-A268 TCGA-GN-A269 
       15.35        24.85        15.35        84.72        15.39         5.59 
TCGA-GN-A26D TCGA-IH-A3EA 
       14.70        12.59 

  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                        0.2                         0.1 
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                      72.16                       98.76 
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                      8.695                      11.440 
[1] "0.2 - 72.2 (8.7)"  "0.1 - 98.8 (11.4)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
[1] "hr=" "1.8"
D1V2, continuous
                             vv
clus                          DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK  1(1P12) MUTATED                    8             6
  AMP PEAK  1(1P12) WILD-TYPE                 19            20
                             vv
clus                          REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK  1(1P12) MUTATED                                                                                         13
  AMP PEAK  1(1P12) WILD-TYPE                                                                                       24
                             vv
clus                          REGIONAL LYMPH NODE
  AMP PEAK  1(1P12) MUTATED                    32
  AMP PEAK  1(1P12) WILD-TYPE                  80
D1V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK  1(1P12) MUTATED
  DISTANT METASTASIS                                                                                               8
  PRIMARY TUMOR                                                                                                    6
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                        13
  REGIONAL LYMPH NODE                                                                                             32
                                                                                          clus
vv                                                                                         AMP PEAK  1(1P12) WILD-TYPE
  DISTANT METASTASIS                                                                                                19
  PRIMARY TUMOR                                                                                                     20
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          24
  REGIONAL LYMPH NODE                                                                                               80
D1V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  1(1P12) MUTATED     20   39
  AMP PEAK  1(1P12) WILD-TYPE   56   87
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  FEMALE                        20                          56
  MALE                          39                          87
D1V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  1(1P12) MUTATED      2   57
  AMP PEAK  1(1P12) WILD-TYPE    1  142
     clus
vv    AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  NO                          2                           1
  YES                        57                         142
                             vv
clus                           M0  M1 M1A M1B M1C
  AMP PEAK  1(1P12) MUTATED    48   1   1   0   1
  AMP PEAK  1(1P12) WILD-TYPE 128   1   1   2   2
D1V6, multiclass
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  1(1P12) MUTATED   30  0   5   5  0   2   3   2  4  1
  AMP PEAK  1(1P12) WILD-TYPE 80  2   3  12  1   3  11   4 15  4
D1V7, multiclass
D1V8, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  1(1P12) MUTATED             1       4        3        6        8
  AMP PEAK  1(1P12) WILD-TYPE           3      13        7        9       12
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  1(1P12) MUTATED           1         2         4         1
  AMP PEAK  1(1P12) WILD-TYPE         8         8        19         8
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  1(1P12) MUTATED            5          5          8        3
  AMP PEAK  1(1P12) WILD-TYPE          2         16         19        4
D1V9, multiclass

Clustering(2) Variable = Amp Peak  2(1q44) mutation analysis
D2V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  2(1Q44) MUTATED   32 26
  AMP PEAK  2(1Q44) WILD-TYPE 27 29
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                         58                          56 
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                         26                          29 
$`AMP PEAK  2(1Q44) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD 
       16.47        98.76        28.08         8.38        21.14        11.41 
TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 
       13.32         9.30         5.39         4.01         2.86         3.88 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       51.12        10.03        39.19         9.99        44.52        36.69 
TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EB-A24D TCGA-EB-A3XB 
        4.93         6.64         7.00        17.56         1.35         1.18 
TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A41B TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
        0.53         0.26         0.10         6.31         1.12         1.35 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L 
        4.27        36.07         8.81        11.15        38.63         1.08 
TCGA-EE-A29M TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2A1 TCGA-EE-A2A2 
       27.12        12.03         8.84         6.48        25.28        23.90 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN 
        8.94         3.52        11.11         6.58         1.71         5.95 
TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A4F0 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-GN-A266 
       72.16        24.00        53.82         6.41         0.20        10.09 
TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26C TCGA-GN-A26D 
       16.21        12.16        24.00        14.70 

$`AMP PEAK  2(1Q44) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JF TCGA-D3-A2JK 
       32.55        70.16        22.55        10.26        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CF TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I2 
       15.25        45.70        24.00        48.79        35.80        13.68 
TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24C 
       25.15        22.36        19.36        14.83         0.53         0.43 
TCGA-EB-A3HV TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X 
        1.28         0.30         0.13         0.20         0.39        11.57 
TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29N 
       12.20         5.13         7.96        37.97         4.41         9.47 
TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A5 
        8.12         9.99         2.43         8.09        11.31         9.67 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A2OS 
        4.18        12.99        28.64        42.84        78.44        12.10 
TCGA-FR-A3R1 TCGA-FS-A1ZR TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-FW-A3TU 
       10.09         8.81         3.22        10.78         1.02         0.13 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A268 
       15.35        24.85        15.35        31.33        84.72        15.39 
TCGA-GN-A269 TCGA-IH-A3EA 
        5.59        12.59 

  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                       0.10                        0.13 
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                      98.76                       84.72 
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                      9.645                      11.835 
[1] "0.1 - 98.8 (9.6)"  "0.1 - 84.7 (11.8)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
[1] "hr=" "1"  
D2V2, continuous
                             vv
clus                          DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK  2(1Q44) MUTATED                   17            12
  AMP PEAK  2(1Q44) WILD-TYPE                 10            14
                             vv
clus                          REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK  2(1Q44) MUTATED                                                                                         23
  AMP PEAK  2(1Q44) WILD-TYPE                                                                                       14
                             vv
clus                          REGIONAL LYMPH NODE
  AMP PEAK  2(1Q44) MUTATED                    54
  AMP PEAK  2(1Q44) WILD-TYPE                  58
D2V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK  2(1Q44) MUTATED
  DISTANT METASTASIS                                                                                              17
  PRIMARY TUMOR                                                                                                   12
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                        23
  REGIONAL LYMPH NODE                                                                                             54
                                                                                          clus
vv                                                                                         AMP PEAK  2(1Q44) WILD-TYPE
  DISTANT METASTASIS                                                                                                10
  PRIMARY TUMOR                                                                                                     14
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          14
  REGIONAL LYMPH NODE                                                                                               58
D2V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q44) MUTATED     44   62
  AMP PEAK  2(1Q44) WILD-TYPE   32   64
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  FEMALE                        44                          32
  MALE                          62                          64
D2V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q44) MUTATED      1  105
  AMP PEAK  2(1Q44) WILD-TYPE    2   94
     clus
vv    AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  NO                          1                           2
  YES                       105                          94
                             vv
clus                          M0 M1 M1A M1B M1C
  AMP PEAK  2(1Q44) MUTATED   92  1   2   1   2
  AMP PEAK  2(1Q44) WILD-TYPE 84  1   0   1   1
D2V6, multiclass
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  2(1Q44) MUTATED   56  0   5  10  0   4   5   4 11  4
  AMP PEAK  2(1Q44) WILD-TYPE 54  2   3   7  1   1   9   2  8  1
D2V7, multiclass
D2V8, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  2(1Q44) MUTATED             2       8        6        9       12
  AMP PEAK  2(1Q44) WILD-TYPE           2       9        4        6        8
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  2(1Q44) MUTATED           2         5        10         3
  AMP PEAK  2(1Q44) WILD-TYPE         7         5        13         6
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  2(1Q44) MUTATED            6         12         15        5
  AMP PEAK  2(1Q44) WILD-TYPE          1          9         12        2
D2V9, multiclass

Clustering(3) Variable = Amp Peak  3(3p13) mutation analysis
D3V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  3(3P13) MUTATED   18 14
  AMP PEAK  3(3P13) WILD-TYPE 41 41
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                         32                          82 
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                         14                          41 
$`AMP PEAK  3(3P13) MUTATED`
TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3CC TCGA-D3-A3CE 
       22.55         8.38        11.41        30.87        45.70        13.32 
TCGA-D3-A3MV TCGA-DA-A1HW TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1IA TCGA-DA-A3F5 
        5.39        35.80         9.99        44.52         4.93        17.56 
TCGA-DA-A3F8 TCGA-EB-A24C TCGA-EB-A41B TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29H 
       14.83         0.43         0.10        36.07         5.13         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29R TCGA-EE-A29T TCGA-ER-A19M TCGA-ER-A3ET 
        1.08        27.12         8.84         6.48        28.64         6.58 
TCGA-ER-A3PL TCGA-FR-A44A TCGA-FS-A4F2 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        1.71        72.16         3.22        31.33        84.72        10.09 
TCGA-GN-A268 TCGA-GN-A26C 
       15.39        24.00 

$`AMP PEAK  3(3P13) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 
       16.47        32.55        70.16        98.76        28.08        10.26 
TCGA-D3-A2J9 TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 
       21.14         6.35        15.25        24.00         9.30         4.01 
TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86         3.88        48.79        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       13.68        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-EB-A1NK TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XC 
        7.00         0.53         1.35         1.28         1.18         0.30 
TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X 
        0.13         0.53         0.26         0.20         0.39        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20H 
        6.31         1.12         1.35        12.20         4.27         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29P 
        7.96        37.97        11.15        38.63         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.12         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN 
       12.99        42.84        78.44        12.10        10.09         5.95 
TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
       24.00         8.81        53.82        10.78         6.41         0.20 
TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A267 
        1.02         0.13        15.35        24.85        15.35        16.21 
TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26D TCGA-IH-A3EA 
        5.59        12.16        14.70        12.59 

  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                       0.10                        0.13 
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                      84.72                       98.76 
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                     12.365                      10.175 
[1] "0.1 - 84.7 (12.4)" "0.1 - 98.8 (10.2)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
[1] "hr=" "1.4"
D3V2, continuous
                             vv
clus                          DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK  3(3P13) MUTATED                   10             4
  AMP PEAK  3(3P13) WILD-TYPE                 17            22
                             vv
clus                          REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK  3(3P13) MUTATED                                                                                         10
  AMP PEAK  3(3P13) WILD-TYPE                                                                                       27
                             vv
clus                          REGIONAL LYMPH NODE
  AMP PEAK  3(3P13) MUTATED                    23
  AMP PEAK  3(3P13) WILD-TYPE                  89
D3V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK  3(3P13) MUTATED
  DISTANT METASTASIS                                                                                              10
  PRIMARY TUMOR                                                                                                    4
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                        10
  REGIONAL LYMPH NODE                                                                                             23
                                                                                          clus
vv                                                                                         AMP PEAK  3(3P13) WILD-TYPE
  DISTANT METASTASIS                                                                                                17
  PRIMARY TUMOR                                                                                                     22
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          27
  REGIONAL LYMPH NODE                                                                                               89
D3V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  3(3P13) MUTATED     23   24
  AMP PEAK  3(3P13) WILD-TYPE   53  102
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  FEMALE                        23                          53
  MALE                          24                         102
D3V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  3(3P13) MUTATED      1   46
  AMP PEAK  3(3P13) WILD-TYPE    2  153
     clus
vv    AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  NO                          1                           2
  YES                        46                         153
                             vv
clus                           M0  M1 M1A M1B M1C
  AMP PEAK  3(3P13) MUTATED    41   0   1   0   1
  AMP PEAK  3(3P13) WILD-TYPE 135   2   1   2   2
D3V6, multiclass
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  3(3P13) MUTATED   25  0   2   5  0   3   3   1  2  2
  AMP PEAK  3(3P13) WILD-TYPE 85  2   6  12  1   2  11   5 17  3
D3V7, multiclass
D3V8, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  3(3P13) MUTATED             1       4        6        3        4
  AMP PEAK  3(3P13) WILD-TYPE           3      13        4       12       16
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  3(3P13) MUTATED           1         1         4         1
  AMP PEAK  3(3P13) WILD-TYPE         8         9        19         8
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  3(3P13) MUTATED            1          9          5        2
  AMP PEAK  3(3P13) WILD-TYPE          6         12         22        5
D3V9, multiclass

Clustering(4) Variable = Amp Peak  4(4q12) mutation analysis
D4V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  4(4Q12) MUTATED   12  8
  AMP PEAK  4(4Q12) WILD-TYPE 47 47
  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                         20                          94 
  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                          8                          47 
$`AMP PEAK  4(4Q12) MUTATED`
TCGA-D3-A1Q8 TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
       28.08        15.25        13.32         2.86        48.79        35.80 
TCGA-DA-A1I1 TCGA-DA-A1IB TCGA-DA-A3F5 TCGA-EB-A3XB TCGA-EE-A181 TCGA-EE-A20F 
       39.19        22.36        17.56         1.18         1.12         5.13 
TCGA-EE-A29D TCGA-EE-A29P TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-GN-A264 
       11.15        12.03         6.58         1.71         5.95        31.33 
TCGA-GN-A268 TCGA-GN-A26D 
       15.39        14.70 

$`AMP PEAK  4(4Q12) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        70.16        98.76        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3CC 
        8.38        21.14        11.41        30.87         6.35        45.70 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z4 TCGA-DA-A1HY 
       24.00         9.30         5.39         4.01         3.88        51.12 
TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       10.03        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EB-A1NK 
        4.93         6.64        19.36         7.00        14.83         0.53 
TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A3Y6 
        0.43         1.35         1.28         0.30         0.13         0.53 
TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A17Z 
        0.26         0.10         0.20         0.39        11.57         6.31 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A 
        1.35        12.20         4.27        36.07         8.81         7.96 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       37.97        38.63         4.41         1.08        27.12         9.47 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
        8.12         8.84         9.99         6.48         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
       11.31        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 
       12.10        10.09        72.16        24.00         8.81        53.82 
TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
        3.22        10.78         6.41         0.20         1.02         0.13 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       15.35        24.85        15.35        84.72        10.09        16.21 
TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C TCGA-IH-A3EA 
        5.59        12.16        24.00        12.59 

  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                       1.12                        0.10 
  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                      48.79                       98.76 
  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                      14.01                       10.06 
[1] "1.1 - 48.8 (14.0)" "0.1 - 98.8 (10.1)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  4(4Q12) MUTATED"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  4(4Q12) MUTATED"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  4(4Q12) WILD-TYPE"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  4(4Q12) MUTATED"   "AMP PEAK  4(4Q12) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
"AMP PEAK  4(4Q12) WILD-TYPE" "AMP PEAK  4(4Q12) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
  "AMP PEAK  4(4Q12) MUTATED" "AMP PEAK  4(4Q12) WILD-TYPE" 
[1] "hr=" "1.4"
D4V2, continuous
                             vv
clus                          DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK  4(4Q12) MUTATED                    2             1
  AMP PEAK  4(4Q12) WILD-TYPE                 25            25
                             vv
clus                          REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK  4(4Q12) MUTATED                                                                                          6
  AMP PEAK  4(4Q12) WILD-TYPE                                                                                       31
                             vv
clus                          REGIONAL LYMPH NODE
  AMP PEAK  4(4Q12) MUTATED                    24
  AMP PEAK  4(4Q12) WILD-TYPE                  88
D4V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK  4(4Q12) MUTATED
  DISTANT METASTASIS                                                                                               2
  PRIMARY TUMOR                                                                                                    1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                         6
  REGIONAL LYMPH NODE                                                                                             24
                                                                                          clus
vv                                                                                         AMP PEAK  4(4Q12) WILD-TYPE
  DISTANT METASTASIS                                                                                                25
  PRIMARY TUMOR                                                                                                     25
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          31
  REGIONAL LYMPH NODE                                                                                               88
D4V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(4Q12) MUTATED     14   19
  AMP PEAK  4(4Q12) WILD-TYPE   62  107
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  FEMALE                        14                          62
  MALE                          19                         107
D4V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(4Q12) MUTATED      0   33
  AMP PEAK  4(4Q12) WILD-TYPE    3  166
     clus
vv    AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  NO                          0                           3
  YES                        33                         166
                             vv
clus                           M0  M1 M1A M1B M1C
  AMP PEAK  4(4Q12) MUTATED    27   0   1   1   0
  AMP PEAK  4(4Q12) WILD-TYPE 149   2   1   1   3
D4V6, multiclass
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  4(4Q12) MUTATED   16  0   3   4  0   0   2   1  3  1
  AMP PEAK  4(4Q12) WILD-TYPE 94  2   5  13  1   5  12   5 16  4
D4V7, multiclass
D4V8, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  4(4Q12) MUTATED             0       4        1        2        5
  AMP PEAK  4(4Q12) WILD-TYPE           4      13        9       13       15
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  4(4Q12) MUTATED           0         1         3         2
  AMP PEAK  4(4Q12) WILD-TYPE         9         9        20         7
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  4(4Q12) MUTATED            2          4          4        2
  AMP PEAK  4(4Q12) WILD-TYPE          5         17         23        5
D4V9, multiclass

Clustering(5) Variable = Amp Peak  5(5p15.33) mutation analysis
D5V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  5(5P15.33) MUTATED   19 12
  AMP PEAK  5(5P15.33) WILD-TYPE 40 43
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            31                             83 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            12                             43 
$`AMP PEAK  5(5P15.33) MUTATED`
TCGA-D3-A1Q9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CF 
       22.55        30.87         6.35        15.25        45.70        24.00 
TCGA-DA-A1HV TCGA-DA-A1I2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EB-A1NK TCGA-EB-A24D 
       48.79        13.68         7.00        17.56         0.53         1.35 
TCGA-EB-A3HV TCGA-EB-A3Y6 TCGA-EB-A42Y TCGA-EE-A181 TCGA-EE-A20B TCGA-EE-A20H 
        1.28         0.53         0.20         1.12        36.07         8.81 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29T TCGA-EE-A2A0 TCGA-ER-A19M 
       11.15        38.63        27.12         6.48        11.31        28.64 
TCGA-ER-A19N TCGA-ER-A3PL TCGA-FR-A44A TCGA-FW-A3TU TCGA-GN-A264 TCGA-GN-A265 
       42.84         1.71        72.16         0.13        31.33        84.72 
TCGA-GN-A26D 
       14.70 

$`AMP PEAK  5(5P15.33) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 
       16.47        32.55        70.16        98.76        28.08        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A3MV 
        8.38        21.14        11.41        13.32         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86         3.88        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       39.19         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EB-A24C TCGA-EB-A3XB 
       22.36         6.64        19.36        14.83         0.43         1.18 
TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Z TCGA-EE-A17X 
        0.30         0.13         0.26         0.10         0.39        11.57 
TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29A 
        6.31         1.35        12.20         4.27         5.13         7.96 
TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       37.97         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         2.43         8.09        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FS-A1ZN 
       78.44         6.58        12.10        10.09         5.95        24.00 
TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
        8.81        53.82         3.22        10.78         6.41         0.20 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A266 TCGA-GN-A267 
        1.02        15.35        24.85        15.35        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C TCGA-IH-A3EA 
       15.39         5.59        12.16        24.00        12.59 

  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                          0.13                           0.10 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                         84.72                          98.76 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                         14.70                          10.03 
[1] "0.1 - 84.7 (14.7)" "0.1 - 98.8 (10.0)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
[1] "hr=" "1.8"
D5V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK  5(5P15.33) MUTATED                    7             7
  AMP PEAK  5(5P15.33) WILD-TYPE                 20            19
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK  5(5P15.33) MUTATED                                                                                          7
  AMP PEAK  5(5P15.33) WILD-TYPE                                                                                       30
                                vv
clus                             REGIONAL LYMPH NODE
  AMP PEAK  5(5P15.33) MUTATED                    32
  AMP PEAK  5(5P15.33) WILD-TYPE                  80
D5V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK  5(5P15.33) MUTATED
  DISTANT METASTASIS                                                                                                  7
  PRIMARY TUMOR                                                                                                       7
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            7
  REGIONAL LYMPH NODE                                                                                                32
                                                                                          clus
vv                                                                                         AMP PEAK  5(5P15.33) WILD-TYPE
  DISTANT METASTASIS                                                                                                   20
  PRIMARY TUMOR                                                                                                        19
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             30
  REGIONAL LYMPH NODE                                                                                                  80
D5V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(5P15.33) MUTATED     20   33
  AMP PEAK  5(5P15.33) WILD-TYPE   56   93
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  FEMALE                           20                             56
  MALE                             33                             93
D5V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(5P15.33) MUTATED      1   52
  AMP PEAK  5(5P15.33) WILD-TYPE    2  147
     clus
vv    AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  NO                             1                              2
  YES                           52                            147
                                vv
clus                              M0  M1 M1A M1B M1C
  AMP PEAK  5(5P15.33) MUTATED    41   0   1   1   0
  AMP PEAK  5(5P15.33) WILD-TYPE 135   2   1   1   3
D5V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  5(5P15.33) MUTATED   29  0   0   3  0   2   7   0  3  1
  AMP PEAK  5(5P15.33) WILD-TYPE 81  2   8  14  1   3   7   6 16  4
D5V7, multiclass
D5V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  5(5P15.33) MUTATED             1       4        2        3        7
  AMP PEAK  5(5P15.33) WILD-TYPE           3      13        8       12       13
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  5(5P15.33) MUTATED           2         1         8         0
  AMP PEAK  5(5P15.33) WILD-TYPE         7         9        15         9
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  5(5P15.33) MUTATED            0          6          6        1
  AMP PEAK  5(5P15.33) WILD-TYPE          7         15         21        6
D5V9, multiclass

Clustering(6) Variable = Amp Peak  6(5q35.3) mutation analysis
D6V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  6(5Q35.3) MUTATED   10  5
  AMP PEAK  6(5Q35.3) WILD-TYPE 49 50
  AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE 
                           15                            99 
  AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE 
                            5                            50 
$`AMP PEAK  6(5Q35.3) MUTATED`
TCGA-D3-A2JF TCGA-D3-A3CF TCGA-DA-A1IA TCGA-EB-A24D TCGA-EB-A3Y6 TCGA-EE-A182 
       30.87        24.00         4.93         1.35         0.53         1.35 
TCGA-EE-A20H TCGA-EE-A29H TCGA-EE-A29R TCGA-EE-A29T TCGA-ER-A19F TCGA-ER-A3ET 
        8.81         4.41         8.84         6.48        11.11         6.58 
TCGA-ER-A3PL TCGA-FW-A3I3 TCGA-FW-A3TU 
        1.71         0.20         0.13 

$`AMP PEAK  6(5Q35.3) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       45.70        13.32         9.30         5.39         4.01         2.86 
TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        3.88        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB 
       13.68         9.99        44.52        36.69        25.15        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A1NK 
        6.64        19.36         7.00        17.56        14.83         0.53 
TCGA-EB-A24C TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A41A 
        0.43         1.28         1.18         0.30         0.13         0.26 
TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
        0.10         0.20         0.39        11.57         6.31         1.12 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C 
       12.20         4.27        36.07         5.13         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       11.15        38.63         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.12         9.99         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L 
       23.90         9.67         8.94         3.52         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN 
       28.64        42.84        78.44        12.10        10.09         5.95 
TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 
       72.16        24.00         8.81        53.82         3.22        10.78 
TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A264 
        6.41         1.02        15.35        24.85        15.35        31.33 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26A 
       84.72        10.09        16.21        15.39         5.59        12.16 
TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
       24.00        14.70        12.59 

  AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE 
                         0.13                          0.10 
  AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE 
                        30.87                         98.76 
  AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE 
                         4.93                         11.57 
[1] "0.1 - 30.9 (4.9)"  "0.1 - 98.8 (11.6)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "AMP PEAK  6(5Q35.3) MUTATED"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "AMP PEAK  6(5Q35.3) MUTATED"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK  6(5Q35.3) WILD-TYPE"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "AMP PEAK  6(5Q35.3) MUTATED"   "AMP PEAK  6(5Q35.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "AMP PEAK  6(5Q35.3) MUTATED" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"AMP PEAK  6(5Q35.3) WILD-TYPE" "AMP PEAK  6(5Q35.3) WILD-TYPE" 
[1] "hr=" "1.6"
D6V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK  6(5Q35.3) MUTATED                    7             2
  AMP PEAK  6(5Q35.3) WILD-TYPE                 20            24
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK  6(5Q35.3) MUTATED                                                                                          3
  AMP PEAK  6(5Q35.3) WILD-TYPE                                                                                       34
                               vv
clus                            REGIONAL LYMPH NODE
  AMP PEAK  6(5Q35.3) MUTATED                    12
  AMP PEAK  6(5Q35.3) WILD-TYPE                 100
D6V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK  6(5Q35.3) MUTATED
  DISTANT METASTASIS                                                                                                 7
  PRIMARY TUMOR                                                                                                      2
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           3
  REGIONAL LYMPH NODE                                                                                               12
                                                                                          clus
vv                                                                                         AMP PEAK  6(5Q35.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                  20
  PRIMARY TUMOR                                                                                                       24
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            34
  REGIONAL LYMPH NODE                                                                                                100
D6V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(5Q35.3) MUTATED     12   12
  AMP PEAK  6(5Q35.3) WILD-TYPE   64  114
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  FEMALE                          12                            64
  MALE                            12                           114
D6V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(5Q35.3) MUTATED      0   24
  AMP PEAK  6(5Q35.3) WILD-TYPE    3  175
     clus
vv    AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  NO                            0                             3
  YES                          24                           175
                               vv
clus                             M0  M1 M1A M1B M1C
  AMP PEAK  6(5Q35.3) MUTATED    20   1   1   1   0
  AMP PEAK  6(5Q35.3) WILD-TYPE 156   1   1   1   3
D6V6, multiclass
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  6(5Q35.3) MUTATED   14  0   1   3  0   1   1   0  2  1
  AMP PEAK  6(5Q35.3) WILD-TYPE 96  2   7  14  1   4  13   6 17  4
D6V7, multiclass
D6V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  6(5Q35.3) MUTATED             0       3        3        1        2
  AMP PEAK  6(5Q35.3) WILD-TYPE           4      14        7       14       18
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  6(5Q35.3) MUTATED           1         0         1         0
  AMP PEAK  6(5Q35.3) WILD-TYPE         8        10        22         9
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  6(5Q35.3) MUTATED            1          2          3        2
  AMP PEAK  6(5Q35.3) WILD-TYPE          6         19         24        5
D6V9, multiclass

Clustering(7) Variable = Amp Peak  7(6p25.1) mutation analysis
D7V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  7(6P25.1) MUTATED   23 36
  AMP PEAK  7(6P25.1) WILD-TYPE 36 19
  AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE 
                           59                            55 
  AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE 
                           36                            19 
$`AMP PEAK  7(6P25.1) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF 
       16.47        98.76        22.55         8.38        21.14        30.87 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3MV TCGA-DA-A1HV TCGA-DA-A1I0 
       15.25        45.70        13.32         5.39        48.79        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F3 
       39.19        13.68         9.99         4.93         6.64         7.00 
TCGA-EB-A24D TCGA-EB-A3XB TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EE-A17Z 
        1.35         1.18         0.13         0.53         0.26         6.31 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29D 
        1.12        12.20         4.27         8.81         7.96        11.15 
TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A5 
        1.08        12.03         8.84         9.99         2.43         9.67 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A3ET 
        3.52        11.11         4.18        28.64        42.84         6.58 
TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F2 
        1.71        12.10        10.09        24.00         8.81         3.22 
TCGA-FS-A4F9 TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 
       10.78         0.20         0.13        31.33        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26D TCGA-IH-A3EA 
       15.39         5.59        12.16        14.70        12.59 

$`AMP PEAK  7(6P25.1) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A2JK 
       32.55        70.16        28.08        10.26        11.41         6.35 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HW 
       24.00         9.30         4.01         2.86         3.88        35.80 
TCGA-DA-A1HY TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A3F2 
       51.12        44.52        36.69        25.15        22.36        19.36 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A3HV TCGA-EB-A3XC 
       17.56        14.83         0.53         0.43         1.28         0.30 
TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A182 TCGA-EE-A20B 
        0.10         0.20         0.39        11.57         1.35        36.07 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N 
        5.13        37.97        38.63         4.41        27.12         9.47 
TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.12         6.48         8.09        11.31        25.28        23.90 
TCGA-EE-A2A6 TCGA-ER-A19L TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A4F0 
        8.94        12.99        78.44         5.95        72.16        53.82 
TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A265 
        6.41         1.02        15.35        24.85        15.35        84.72 
TCGA-GN-A26C 
       24.00 

  AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE 
                         0.13                          0.10 
  AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE 
                        98.76                         84.72 
  AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE 
                         9.99                         12.99 
[1] "0.1 - 98.8 (10.0)" "0.1 - 84.7 (13.0)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK  7(6P25.1) WILD-TYPE"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"AMP PEAK  7(6P25.1) WILD-TYPE" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "AMP PEAK  7(6P25.1) MUTATED" "AMP PEAK  7(6P25.1) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "AMP PEAK  7(6P25.1) MUTATED"   "AMP PEAK  7(6P25.1) MUTATED" 
[1] "hr=" "2.6"
D7V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK  7(6P25.1) MUTATED                   18            10
  AMP PEAK  7(6P25.1) WILD-TYPE                  9            16
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK  7(6P25.1) MUTATED                                                                                         24
  AMP PEAK  7(6P25.1) WILD-TYPE                                                                                       13
                               vv
clus                            REGIONAL LYMPH NODE
  AMP PEAK  7(6P25.1) MUTATED                    61
  AMP PEAK  7(6P25.1) WILD-TYPE                  51
D7V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK  7(6P25.1) MUTATED
  DISTANT METASTASIS                                                                                                18
  PRIMARY TUMOR                                                                                                     10
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          24
  REGIONAL LYMPH NODE                                                                                               61
                                                                                          clus
vv                                                                                         AMP PEAK  7(6P25.1) WILD-TYPE
  DISTANT METASTASIS                                                                                                   9
  PRIMARY TUMOR                                                                                                       16
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            13
  REGIONAL LYMPH NODE                                                                                                 51
D7V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(6P25.1) MUTATED     42   71
  AMP PEAK  7(6P25.1) WILD-TYPE   34   55
        clus
vv       AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE
  FEMALE                          42                            34
  MALE                            71                            55
D7V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(6P25.1) MUTATED      1  112
  AMP PEAK  7(6P25.1) WILD-TYPE    2   87
     clus
vv    AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE
  NO                            1                             2
  YES                         112                            87
                               vv
clus                            M0 M1 M1A M1B M1C
  AMP PEAK  7(6P25.1) MUTATED   96  2   2   1   1
  AMP PEAK  7(6P25.1) WILD-TYPE 80  0   0   1   2
D7V6, multiclass
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  7(6P25.1) MUTATED   62  0   8   8  0   4   7   4 10  1
  AMP PEAK  7(6P25.1) WILD-TYPE 48  2   0   9  1   1   7   2  9  4
D7V7, multiclass
D7V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  7(6P25.1) MUTATED             1      11        6        8       11
  AMP PEAK  7(6P25.1) WILD-TYPE           3       6        4        7        9
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  7(6P25.1) MUTATED           4         6        13         3
  AMP PEAK  7(6P25.1) WILD-TYPE         5         4        10         6
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  7(6P25.1) MUTATED            7         12         13        4
  AMP PEAK  7(6P25.1) WILD-TYPE          0          9         14        3
D7V9, multiclass

Clustering(8) Variable = Amp Peak  8(6q12) mutation analysis
D8V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  8(6Q12) MUTATED    9 11
  AMP PEAK  8(6Q12) WILD-TYPE 50 44
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         20                          94 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         11                          44 
$`AMP PEAK  8(6Q12) MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A3CC TCGA-DA-A1HV 
       98.76         8.38        21.14        30.87        45.70        48.79 
TCGA-DA-A1I1 TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A20B TCGA-ER-A19D TCGA-ER-A19M 
       39.19         1.12        12.20        36.07         3.52        28.64 
TCGA-ER-A19N TCGA-ER-A3ET TCGA-FW-A3TU TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 
       42.84         6.58         0.13        31.33        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A269 
       15.39         5.59 

$`AMP PEAK  8(6Q12) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        70.16        28.08        22.55        10.26 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO 
       11.41         6.35        15.25        13.32        24.00         9.30 
TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HW TCGA-DA-A1HY 
        5.39         4.01         2.86         3.88        35.80        51.12 
TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       10.03        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
        4.93        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XB 
       14.83         0.53         0.43         1.35         1.28         1.18 
TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y 
        0.30         0.13         0.53         0.26         0.10         0.20 
TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20F 
        0.39        11.57         6.31         1.35         4.27         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        8.81         7.96        37.97        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        1.08        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        9.99         6.48         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.90         9.67         8.94        11.11         4.18        12.99 
TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A 
       78.44         1.71        12.10        10.09         5.95        72.16 
TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC 
       24.00         8.81        53.82         3.22        10.78         6.41 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A265 
        0.20         1.02        15.35        24.85        15.35        84.72 
TCGA-GN-A26A TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
       12.16        24.00        14.70        12.59 

  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                       0.13                        0.10 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                      98.76                       84.72 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                     18.675                      10.010 
[1] "0.1 - 98.8 (18.7)" "0.1 - 84.7 (10.0)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
                             vv
clus                          DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK  8(6Q12) MUTATED                    4             1
  AMP PEAK  8(6Q12) WILD-TYPE                 23            25
                             vv
clus                          REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK  8(6Q12) MUTATED                                                                                         11
  AMP PEAK  8(6Q12) WILD-TYPE                                                                                       26
                             vv
clus                          REGIONAL LYMPH NODE
  AMP PEAK  8(6Q12) MUTATED                    23
  AMP PEAK  8(6Q12) WILD-TYPE                  89
D8V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK  8(6Q12) MUTATED
  DISTANT METASTASIS                                                                                               4
  PRIMARY TUMOR                                                                                                    1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                        11
  REGIONAL LYMPH NODE                                                                                             23
                                                                                          clus
vv                                                                                         AMP PEAK  8(6Q12) WILD-TYPE
  DISTANT METASTASIS                                                                                                23
  PRIMARY TUMOR                                                                                                     25
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          26
  REGIONAL LYMPH NODE                                                                                               89
D8V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6Q12) MUTATED     13   26
  AMP PEAK  8(6Q12) WILD-TYPE   63  100
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  FEMALE                        13                          63
  MALE                          26                         100
D8V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6Q12) MUTATED      1   38
  AMP PEAK  8(6Q12) WILD-TYPE    2  161
     clus
vv    AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  NO                          1                           2
  YES                        38                         161
                             vv
clus                           M0  M1 M1A M1B M1C
  AMP PEAK  8(6Q12) MUTATED    32   0   0   0   0
  AMP PEAK  8(6Q12) WILD-TYPE 144   2   2   2   3
D8V6, multiclass
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  8(6Q12) MUTATED   21  0   4   1  0   1   2   1  3  0
  AMP PEAK  8(6Q12) WILD-TYPE 89  2   4  16  1   4  12   5 16  5
D8V7, multiclass
D8V8, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  8(6Q12) MUTATED             0       4        4        5        3
  AMP PEAK  8(6Q12) WILD-TYPE           4      13        6       10       17
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  8(6Q12) MUTATED           2         2         1         0
  AMP PEAK  8(6Q12) WILD-TYPE         7         8        22         9
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  8(6Q12) MUTATED            3          3          3        0
  AMP PEAK  8(6Q12) WILD-TYPE          4         18         24        7
D8V9, multiclass

Clustering(9) Variable = Amp Peak  9(7p22.3) mutation analysis
D9V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  9(7P22.3) MUTATED   24 34
  AMP PEAK  9(7P22.3) WILD-TYPE 35 21
  AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE 
                           58                            56 
  AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE 
                           34                            21 
$`AMP PEAK  9(7P22.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q9 TCGA-D3-A2J9 TCGA-D3-A2JD 
       16.47        32.55        70.16        22.55        21.14        11.41 
TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       45.70         9.30         2.86        48.79        35.80        51.12 
TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       10.03        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A1IC TCGA-EB-A1NK TCGA-EB-A24D TCGA-EB-A3XC TCGA-EB-A3Y6 
        4.93         6.64         0.53         1.35         0.30         0.53 
TCGA-EB-A42Y TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        0.20         6.31         1.12         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
       11.15        38.63         4.41         1.08         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A2A0 TCGA-EE-A2A6 TCGA-ER-A19J TCGA-ER-A19M 
        8.12         6.48        11.31         8.94         4.18        28.64 
TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZR 
        1.71        12.10        10.09         5.95        72.16         8.81 
TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
        3.22         0.20        31.33        10.09        16.21        15.39 
TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C TCGA-GN-A26D 
        5.59        12.16        24.00        14.70 

$`AMP PEAK  9(7P22.3) WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2JF TCGA-D3-A2JK 
       98.76        28.08        10.26         8.38        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z4 
       15.25        13.32        24.00         5.39         4.01         3.88 
TCGA-DA-A1I1 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       39.19        22.36        19.36         7.00        17.56        14.83 
TCGA-EB-A24C TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XF TCGA-EB-A41A TCGA-EB-A41B 
        0.43         1.28         1.18         0.13         0.26         0.10 
TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        0.39        11.57         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A29M TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
        5.13        27.12         8.84         9.99         2.43         8.09 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L 
       25.28        23.90         9.67         3.52        11.11        12.99 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZN TCGA-FS-A4F0 TCGA-FS-A4F9 
       42.84        78.44         6.58        24.00        53.82        10.78 
TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 
        6.41         1.02         0.13        15.35        24.85        15.35 
TCGA-GN-A265 TCGA-IH-A3EA 
       84.72        12.59 

  AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE 
                          0.2                           0.1 
  AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE 
                        72.16                         98.76 
  AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE 
                       10.090                        10.945 
[1] "0.2 - 72.2 (10.1)" "0.1 - 98.8 (10.9)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK  9(7P22.3) WILD-TYPE"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "AMP PEAK  9(7P22.3) MUTATED"   "AMP PEAK  9(7P22.3) MUTATED" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "AMP PEAK  9(7P22.3) MUTATED" "AMP PEAK  9(7P22.3) WILD-TYPE" 
[1] "hr=" "1.5"
D9V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK  9(7P22.3) MUTATED                   16            12
  AMP PEAK  9(7P22.3) WILD-TYPE                 11            14
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK  9(7P22.3) MUTATED                                                                                         22
  AMP PEAK  9(7P22.3) WILD-TYPE                                                                                       15
                               vv
clus                            REGIONAL LYMPH NODE
  AMP PEAK  9(7P22.3) MUTATED                    61
  AMP PEAK  9(7P22.3) WILD-TYPE                  51
D9V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK  9(7P22.3) MUTATED
  DISTANT METASTASIS                                                                                                16
  PRIMARY TUMOR                                                                                                     12
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          22
  REGIONAL LYMPH NODE                                                                                               61
                                                                                          clus
vv                                                                                         AMP PEAK  9(7P22.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                  11
  PRIMARY TUMOR                                                                                                       14
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            15
  REGIONAL LYMPH NODE                                                                                                 51
D9V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(7P22.3) MUTATED     40   71
  AMP PEAK  9(7P22.3) WILD-TYPE   36   55
        clus
vv       AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE
  FEMALE                          40                            36
  MALE                            71                            55
D9V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(7P22.3) MUTATED      1  110
  AMP PEAK  9(7P22.3) WILD-TYPE    2   89
     clus
vv    AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE
  NO                            1                             2
  YES                         110                            89
                               vv
clus                            M0 M1 M1A M1B M1C
  AMP PEAK  9(7P22.3) MUTATED   94  2   2   1   2
  AMP PEAK  9(7P22.3) WILD-TYPE 82  0   0   1   1
D9V6, multiclass
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  9(7P22.3) MUTATED   62  0   5  10  0   3   6   4  9  3
  AMP PEAK  9(7P22.3) WILD-TYPE 48  2   3   7  1   2   8   2 10  2
D9V7, multiclass
D9V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  9(7P22.3) MUTATED             4      10        6        5       10
  AMP PEAK  9(7P22.3) WILD-TYPE           0       7        4       10       10
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  9(7P22.3) MUTATED           4         5        15         3
  AMP PEAK  9(7P22.3) WILD-TYPE         5         5         8         6
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  9(7P22.3) MUTATED            5         13         12        5
  AMP PEAK  9(7P22.3) WILD-TYPE          2          8         15        2
D9V9, multiclass

Clustering(10) Variable = Amp Peak 10(7q34) mutation analysis
D10V1, survival
                             sevent
clus2                          0  1
  AMP PEAK 10(7Q34) MUTATED   35 34
  AMP PEAK 10(7Q34) WILD-TYPE 24 21
  AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE 
                         69                          45 
  AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE 
                         34                          21 
$`AMP PEAK 10(7Q34) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q9 TCGA-D3-A2J9 TCGA-D3-A2JD 
       16.47        32.55        70.16        22.55        21.14        11.41 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z3 TCGA-DA-A1HV 
       45.70        13.32         9.30         5.39         2.86        48.79 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
       35.80        51.12        10.03        13.68         9.99        44.52 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F5 TCGA-DA-A3F8 
       36.69        25.15         4.93         6.64        17.56        14.83 
TCGA-EB-A1NK TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF 
        0.53         1.35         1.28         1.18         0.30         0.13 
TCGA-EB-A3Y6 TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
        0.53         0.20         0.39         1.12         1.35        12.20 
TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
       36.07         8.81         7.96        37.97        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29T TCGA-EE-A2A0 
        1.08        27.12         9.47        12.03         6.48        11.31 
TCGA-EE-A2A6 TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3R1 
        8.94         4.18        28.64         6.58         1.71        10.09 
TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZR TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-GN-A264 
        5.95        72.16         8.81         3.22         0.20        31.33 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26A 
       84.72        10.09        16.21        15.39         5.59        12.16 
TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
       24.00        14.70        12.59 

$`AMP PEAK 10(7Q34) WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2JF TCGA-D3-A2JK 
       98.76        28.08        10.26         8.38        30.87         6.35 
TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D9-A3Z1 TCGA-D9-A3Z4 TCGA-DA-A1I1 TCGA-DA-A1IB 
       15.25        24.00         4.01         3.88        39.19        22.36 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-EB-A24C TCGA-EB-A41A TCGA-EB-A41B TCGA-EE-A17X 
       19.36         7.00         0.43         0.26         0.10        11.57 
TCGA-EE-A17Z TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29Q TCGA-EE-A29R 
        6.31         4.27         5.13        11.15         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        9.99         2.43         8.09        25.28        23.90         9.67 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A2OS 
        3.52        11.11        12.99        42.84        78.44        12.10 
TCGA-FS-A1ZN TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU 
       24.00        53.82        10.78         6.41         1.02         0.13 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 
       15.35        24.85        15.35 

  AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE 
                       0.13                        0.10 
  AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE 
                      84.72                       98.76 
  AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE 
                      10.09                       10.78 
[1] "0.1 - 84.7 (10.1)" "0.1 - 98.8 (10.8)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"AMP PEAK 10(7Q34) WILD-TYPE"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "AMP PEAK 10(7Q34) MUTATED" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"AMP PEAK 10(7Q34) WILD-TYPE" "AMP PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
  "AMP PEAK 10(7Q34) MUTATED"   "AMP PEAK 10(7Q34) MUTATED" 
[1] "hr=" "1"  
D10V2, continuous
                             vv
clus                          DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK 10(7Q34) MUTATED                   15            17
  AMP PEAK 10(7Q34) WILD-TYPE                 12             9
                             vv
clus                          REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK 10(7Q34) MUTATED                                                                                         24
  AMP PEAK 10(7Q34) WILD-TYPE                                                                                       13
                             vv
clus                          REGIONAL LYMPH NODE
  AMP PEAK 10(7Q34) MUTATED                    62
  AMP PEAK 10(7Q34) WILD-TYPE                  50
D10V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK 10(7Q34) MUTATED
  DISTANT METASTASIS                                                                                              15
  PRIMARY TUMOR                                                                                                   17
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                        24
  REGIONAL LYMPH NODE                                                                                             62
                                                                                          clus
vv                                                                                         AMP PEAK 10(7Q34) WILD-TYPE
  DISTANT METASTASIS                                                                                                12
  PRIMARY TUMOR                                                                                                      9
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          13
  REGIONAL LYMPH NODE                                                                                               50
D10V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 10(7Q34) MUTATED     46   72
  AMP PEAK 10(7Q34) WILD-TYPE   30   54
        clus
vv       AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE
  FEMALE                        46                          30
  MALE                          72                          54
D10V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 10(7Q34) MUTATED      1  117
  AMP PEAK 10(7Q34) WILD-TYPE    2   82
     clus
vv    AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE
  NO                          1                           2
  YES                       117                          82
                             vv
clus                           M0  M1 M1A M1B M1C
  AMP PEAK 10(7Q34) MUTATED   102   2   2   1   2
  AMP PEAK 10(7Q34) WILD-TYPE  74   0   0   1   1
D10V6, multiclass
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 10(7Q34) MUTATED   60  1   6  12  0   5   8   4 10  4
  AMP PEAK 10(7Q34) WILD-TYPE 50  1   2   5  1   0   6   2  9  1
D10V7, multiclass
D10V8, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 10(7Q34) MUTATED             4       7        6        5       13
  AMP PEAK 10(7Q34) WILD-TYPE           0      10        4       10        7
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 10(7Q34) MUTATED           4         2        17         5
  AMP PEAK 10(7Q34) WILD-TYPE         5         8         6         4
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 10(7Q34) MUTATED            6         15         15        5
  AMP PEAK 10(7Q34) WILD-TYPE          1          6         12        2
D10V9, multiclass

Clustering(11) Variable = Amp Peak 11(8q11.22) mutation analysis
D11V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 11(8Q11.22) MUTATED   26 22
  AMP PEAK 11(8Q11.22) WILD-TYPE 33 33
  AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE 
                            48                             66 
  AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE 
                            22                             33 
$`AMP PEAK 11(8Q11.22) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A2J6 TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-D3-A3CC 
       16.47        70.16        10.26        30.87        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3MV TCGA-D9-A3Z4 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 
       13.32         5.39         3.88        35.80        51.12        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A3F5 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A24D 
       13.68         9.99        17.56         0.53         0.43         1.35 
TCGA-EB-A3XB TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A42Y TCGA-EE-A17Z TCGA-EE-A181 
        1.18         0.13         0.53         0.20         6.31         1.12 
TCGA-EE-A20B TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V 
       36.07        37.97        38.63         8.84         6.48         2.43 
TCGA-EE-A2A5 TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A3ET 
        9.67         4.18        12.99        28.64        42.84         6.58 
TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-GN-A264 
       72.16        24.00         8.81         3.22         0.20        31.33 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
       84.72        16.21        12.16        24.00        14.70        12.59 

$`AMP PEAK 11(8Q11.22) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 
       32.55        98.76        28.08        22.55         8.38        21.14 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       11.41         6.35        24.00         9.30         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1I0 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       48.79        10.03        44.52        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EB-A3HV 
       22.36         6.64        19.36         7.00        14.83         1.28 
TCGA-EB-A3XC TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A182 
        0.30         0.26         0.10         0.39        11.57         1.35 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29D 
       12.20         4.27         5.13         8.81         7.96        11.15 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 
        9.99         8.09        11.31        25.28        23.90         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 
        3.52        11.11        78.44         1.71        12.10        10.09 
TCGA-FR-A3YN TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU 
        5.95        53.82        10.78         6.41         1.02         0.13 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A269 
       15.35        24.85        15.35        10.09        15.39         5.59 

  AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE 
                          0.13                           0.10 
  AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE 
                         84.72                          98.76 
  AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE 
                         12.79                          10.06 
[1] "0.1 - 84.7 (12.8)" "0.1 - 98.8 (10.1)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 11(8Q11.22) MUTATED" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 11(8Q11.22) WILD-TYPE"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"AMP PEAK 11(8Q11.22) WILD-TYPE" "AMP PEAK 11(8Q11.22) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 11(8Q11.22) MUTATED"   "AMP PEAK 11(8Q11.22) MUTATED" 
[1] "hr=" "1.4"
D11V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK 11(8Q11.22) MUTATED                   12            11
  AMP PEAK 11(8Q11.22) WILD-TYPE                 15            15
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK 11(8Q11.22) MUTATED                                                                                         19
  AMP PEAK 11(8Q11.22) WILD-TYPE                                                                                       18
                                vv
clus                             REGIONAL LYMPH NODE
  AMP PEAK 11(8Q11.22) MUTATED                    41
  AMP PEAK 11(8Q11.22) WILD-TYPE                  71
D11V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK 11(8Q11.22) MUTATED
  DISTANT METASTASIS                                                                                                 12
  PRIMARY TUMOR                                                                                                      11
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           19
  REGIONAL LYMPH NODE                                                                                                41
                                                                                          clus
vv                                                                                         AMP PEAK 11(8Q11.22) WILD-TYPE
  DISTANT METASTASIS                                                                                                   15
  PRIMARY TUMOR                                                                                                        15
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             18
  REGIONAL LYMPH NODE                                                                                                  71
D11V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8Q11.22) MUTATED     29   54
  AMP PEAK 11(8Q11.22) WILD-TYPE   47   72
        clus
vv       AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE
  FEMALE                           29                             47
  MALE                             54                             72
D11V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8Q11.22) MUTATED      1   82
  AMP PEAK 11(8Q11.22) WILD-TYPE    2  117
     clus
vv    AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE
  NO                             1                              2
  YES                           82                            117
                                vv
clus                              M0  M1 M1A M1B M1C
  AMP PEAK 11(8Q11.22) MUTATED    73   2   0   0   0
  AMP PEAK 11(8Q11.22) WILD-TYPE 103   0   2   2   3
D11V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 11(8Q11.22) MUTATED   45  1   5   8  0   2   5   1  6  3
  AMP PEAK 11(8Q11.22) WILD-TYPE 65  1   3   9  1   3   9   5 13  2
D11V7, multiclass
D11V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 11(8Q11.22) MUTATED             2       7        3        4       11
  AMP PEAK 11(8Q11.22) WILD-TYPE           2      10        7       11        9
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 11(8Q11.22) MUTATED           3         4        12         6
  AMP PEAK 11(8Q11.22) WILD-TYPE         6         6        11         3
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 11(8Q11.22) MUTATED            4          7         10        2
  AMP PEAK 11(8Q11.22) WILD-TYPE          3         14         17        5
D11V9, multiclass

Clustering(12) Variable = Amp Peak 12(8q24.3) mutation analysis
D12V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 12(8Q24.3) MUTATED   28 27
  AMP PEAK 12(8Q24.3) WILD-TYPE 31 28
  AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE 
                           55                            59 
  AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE 
                           27                            28 
$`AMP PEAK 12(8Q24.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JF TCGA-D3-A3C6 
       16.47        70.16        22.55        10.26        30.87        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z4 TCGA-DA-A1HW 
       45.70        13.32         9.30         5.39         3.88        35.80 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A3F3 
       51.12        10.03        39.19        13.68         9.99         7.00 
TCGA-DA-A3F5 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3XB TCGA-EB-A3XF 
       17.56         0.53         0.43         1.35         1.18         0.13 
TCGA-EB-A3Y6 TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A29C 
        0.53         0.20         0.39         6.31         1.12        37.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       38.63         4.41         1.08         8.84         9.99         6.48 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A5 TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        2.43         8.09         9.67         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A3ET TCGA-FR-A2OS TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR 
       42.84         6.58        12.10        72.16        24.00         8.81 
TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
        3.22         0.20        84.72        16.21        12.16        14.70 
TCGA-IH-A3EA 
       12.59 

$`AMP PEAK 12(8Q24.3) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD 
       32.55        98.76        28.08         8.38        21.14        11.41 
TCGA-D3-A2JK TCGA-D3-A3CF TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1I5 
        6.35        24.00         4.01         2.86        48.79        44.52 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       36.69        25.15         4.93        22.36         6.64        19.36 
TCGA-DA-A3F8 TCGA-EB-A3HV TCGA-EB-A3XC TCGA-EB-A41A TCGA-EB-A41B TCGA-EE-A17X 
       14.83         1.28         0.30         0.26         0.10        11.57 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        1.35        12.20         4.27        36.07         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        7.96        11.15        27.12         9.47        12.03         8.12 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       11.31        25.28        23.90         8.94         3.52        11.11 
TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FS-A4F0 TCGA-FS-A4F9 
       78.44         1.71        10.09         5.95        53.82        10.78 
TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 
        6.41         1.02         0.13        15.35        24.85        15.35 
TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26C 
       31.33        10.09        15.39         5.59        24.00 

  AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE 
                         0.13                          0.10 
  AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE 
                        84.72                         98.76 
  AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE 
                         9.99                         11.15 
[1] "0.1 - 84.7 (10.0)" "0.1 - 98.8 (11.2)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"AMP PEAK 12(8Q24.3) WILD-TYPE"   "AMP PEAK 12(8Q24.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"AMP PEAK 12(8Q24.3) WILD-TYPE" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "AMP PEAK 12(8Q24.3) MUTATED" "AMP PEAK 12(8Q24.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "AMP PEAK 12(8Q24.3) MUTATED"   "AMP PEAK 12(8Q24.3) MUTATED" 
[1] "hr=" "1.1"
D12V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK 12(8Q24.3) MUTATED                   13            12
  AMP PEAK 12(8Q24.3) WILD-TYPE                 14            14
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK 12(8Q24.3) MUTATED                                                                                         20
  AMP PEAK 12(8Q24.3) WILD-TYPE                                                                                       17
                               vv
clus                            REGIONAL LYMPH NODE
  AMP PEAK 12(8Q24.3) MUTATED                    52
  AMP PEAK 12(8Q24.3) WILD-TYPE                  60
D12V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK 12(8Q24.3) MUTATED
  DISTANT METASTASIS                                                                                                13
  PRIMARY TUMOR                                                                                                     12
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          20
  REGIONAL LYMPH NODE                                                                                               52
                                                                                          clus
vv                                                                                         AMP PEAK 12(8Q24.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                  14
  PRIMARY TUMOR                                                                                                       14
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            17
  REGIONAL LYMPH NODE                                                                                                 60
D12V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(8Q24.3) MUTATED     34   63
  AMP PEAK 12(8Q24.3) WILD-TYPE   42   63
        clus
vv       AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE
  FEMALE                          34                            42
  MALE                            63                            63
D12V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(8Q24.3) MUTATED      0   97
  AMP PEAK 12(8Q24.3) WILD-TYPE    3  102
     clus
vv    AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE
  NO                            0                             3
  YES                          97                           102
                               vv
clus                            M0 M1 M1A M1B M1C
  AMP PEAK 12(8Q24.3) MUTATED   87  2   1   0   0
  AMP PEAK 12(8Q24.3) WILD-TYPE 89  0   1   2   3
D12V6, multiclass
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 12(8Q24.3) MUTATED   53  1   5  10  0   4   5   2  8  3
  AMP PEAK 12(8Q24.3) WILD-TYPE 57  1   3   7  1   1   9   4 11  2
D12V7, multiclass
D12V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 12(8Q24.3) MUTATED             2       7        4        7       11
  AMP PEAK 12(8Q24.3) WILD-TYPE           2      10        6        8        9
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 12(8Q24.3) MUTATED           5         5        13         7
  AMP PEAK 12(8Q24.3) WILD-TYPE         4         5        10         2
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 12(8Q24.3) MUTATED            4         10         12        2
  AMP PEAK 12(8Q24.3) WILD-TYPE          3         11         15        5
D12V9, multiclass

Clustering(13) Variable = Amp Peak 13(9p24.1) mutation analysis
D13V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 13(9P24.1) MUTATED    4  5
  AMP PEAK 13(9P24.1) WILD-TYPE 55 50
  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                            9                           105 
  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                            5                            50 
$`AMP PEAK 13(9P24.1) MUTATED`
TCGA-D3-A1Q9 TCGA-DA-A1I5 TCGA-DA-A3F3 TCGA-EE-A29A TCGA-ER-A19M TCGA-ER-A3ET 
       22.55        44.52         7.00         7.96        28.64         6.58 
TCGA-FW-A3I3 TCGA-GN-A262 TCGA-GN-A26C 
        0.20        24.85        24.00 

$`AMP PEAK 13(9P24.1) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 
       16.47        32.55        70.16        98.76        28.08        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
        8.38        21.14        11.41        30.87         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.86         3.88        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       39.19        13.68         9.99        36.69        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A1NK 
       22.36         6.64        19.36        17.56        14.83         0.53 
TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF 
        0.43         1.35         1.28         1.18         0.30         0.13 
TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X 
        0.53         0.26         0.10         0.20         0.39        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        6.31         1.12         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        5.13         8.81        37.97        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        1.08        27.12         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        9.99         6.48         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 
       12.99        42.84        78.44         1.71        12.10        10.09 
TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F2 
        5.95        72.16        24.00         8.81        53.82         3.22 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A263 
       10.78         6.41         1.02         0.13        15.35        15.35 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A269 
       31.33        84.72        10.09        16.21        15.39         5.59 
TCGA-GN-A26A TCGA-GN-A26D TCGA-IH-A3EA 
       12.16        14.70        12.59 

  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                          0.2                           0.1 
  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                        44.52                         98.76 
  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                        22.55                         10.26 
[1] "0.2 - 44.5 (22.6)" "0.1 - 98.8 (10.3)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "AMP PEAK 13(9P24.1) MUTATED" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "AMP PEAK 13(9P24.1) MUTATED" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK 13(9P24.1) MUTATED" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "AMP PEAK 13(9P24.1) MUTATED" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "AMP PEAK 13(9P24.1) MUTATED" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "AMP PEAK 13(9P24.1) MUTATED" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK 13(9P24.1) MUTATED" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "AMP PEAK 13(9P24.1) MUTATED" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "AMP PEAK 13(9P24.1) MUTATED" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "AMP PEAK 13(9P24.1) MUTATED" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "AMP PEAK 13(9P24.1) MUTATED" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "AMP PEAK 13(9P24.1) MUTATED" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"AMP PEAK 13(9P24.1) WILD-TYPE"   "AMP PEAK 13(9P24.1) MUTATED" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"AMP PEAK 13(9P24.1) WILD-TYPE" "AMP PEAK 13(9P24.1) WILD-TYPE" 
[1] "hr=" "1"  
D13V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK 13(9P24.1) MUTATED                    5             1
  AMP PEAK 13(9P24.1) WILD-TYPE                 22            25
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK 13(9P24.1) MUTATED                                                                                          3
  AMP PEAK 13(9P24.1) WILD-TYPE                                                                                       34
                               vv
clus                            REGIONAL LYMPH NODE
  AMP PEAK 13(9P24.1) MUTATED                     5
  AMP PEAK 13(9P24.1) WILD-TYPE                 107
D13V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK 13(9P24.1) MUTATED
  DISTANT METASTASIS                                                                                                 5
  PRIMARY TUMOR                                                                                                      1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           3
  REGIONAL LYMPH NODE                                                                                                5
                                                                                          clus
vv                                                                                         AMP PEAK 13(9P24.1) WILD-TYPE
  DISTANT METASTASIS                                                                                                  22
  PRIMARY TUMOR                                                                                                       25
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            34
  REGIONAL LYMPH NODE                                                                                                107
D13V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(9P24.1) MUTATED      6    8
  AMP PEAK 13(9P24.1) WILD-TYPE   70  118
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  FEMALE                           6                            70
  MALE                             8                           118
D13V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(9P24.1) MUTATED      1   13
  AMP PEAK 13(9P24.1) WILD-TYPE    2  186
     clus
vv    AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  NO                            1                             2
  YES                          13                           186
                               vv
clus                             M0  M1 M1A M1B M1C
  AMP PEAK 13(9P24.1) MUTATED    11   1   0   0   1
  AMP PEAK 13(9P24.1) WILD-TYPE 165   1   2   2   2
D13V6, multiclass
                               vv
clus                             N0  N1 N1A N1B  N2 N2A N2B N2C  N3  NX
  AMP PEAK 13(9P24.1) MUTATED     8   0   2   0   0   1   2   0   0   0
  AMP PEAK 13(9P24.1) WILD-TYPE 102   2   6  17   1   4  12   6  19   5
D13V7, multiclass
D13V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 13(9P24.1) MUTATED             0       2        2        1        1
  AMP PEAK 13(9P24.1) WILD-TYPE           4      15        8       14       19
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 13(9P24.1) MUTATED           0         0         0         0
  AMP PEAK 13(9P24.1) WILD-TYPE         9        10        23         9
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 13(9P24.1) MUTATED            2          2          1        2
  AMP PEAK 13(9P24.1) WILD-TYPE          5         19         26        5
D13V9, multiclass

Clustering(14) Variable = Amp Peak 14(11q13.3) mutation analysis
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(11Q13.3) MUTATED    7  9
  AMP PEAK 14(11Q13.3) WILD-TYPE 52 46
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                            16                             98 
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                             9                             46 
$`AMP PEAK 14(11Q13.3) MUTATED`
TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JF TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A3Z3 
       22.55        10.26        30.87        13.32        24.00         2.86 
TCGA-DA-A3F3 TCGA-EB-A41B TCGA-EE-A20F TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A3ET 
        7.00         0.10         5.13        28.64        42.84         6.58 
TCGA-FS-A4F2 TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A26D 
        3.22        10.09        15.39        14.70 

$`AMP PEAK 14(11Q13.3) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 
       16.47        32.55        70.16        98.76        28.08         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3MO 
       21.14        11.41         6.35        15.25        45.70         9.30 
TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
        5.39         4.01         3.88        48.79        35.80        51.12 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       10.03        39.19        13.68         9.99        44.52        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F5 
       25.15         4.93        22.36         6.64        19.36        17.56 
TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XB 
       14.83         0.53         0.43         1.35         1.28         1.18 
TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A42Y TCGA-EB-A42Z 
        0.30         0.13         0.53         0.26         0.20         0.39 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       36.07         8.81         7.96        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
        8.84         9.99         6.48         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 
        4.18        12.99        78.44         1.71        12.10        10.09 
TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F9 
        5.95        72.16        24.00         8.81        53.82        10.78 
TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 
        6.41         0.20         1.02         0.13        15.35        24.85 
TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A269 TCGA-GN-A26A 
       15.35        31.33        84.72        16.21         5.59        12.16 
TCGA-GN-A26C TCGA-IH-A3EA 
       24.00        12.59 

  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                          0.10                           0.13 
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                         42.84                          98.76 
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                        11.790                         10.435 
[1] "0.1 - 42.8 (11.8)" "0.1 - 98.8 (10.4)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
[1] "hr=" "1.2"
D14V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK 14(11Q13.3) MUTATED                    6             1
  AMP PEAK 14(11Q13.3) WILD-TYPE                 21            25
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK 14(11Q13.3) MUTATED                                                                                          4
  AMP PEAK 14(11Q13.3) WILD-TYPE                                                                                       33
                                vv
clus                             REGIONAL LYMPH NODE
  AMP PEAK 14(11Q13.3) MUTATED                    19
  AMP PEAK 14(11Q13.3) WILD-TYPE                  93
D14V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK 14(11Q13.3) MUTATED
  DISTANT METASTASIS                                                                                                  6
  PRIMARY TUMOR                                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            4
  REGIONAL LYMPH NODE                                                                                                19
                                                                                          clus
vv                                                                                         AMP PEAK 14(11Q13.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                   21
  PRIMARY TUMOR                                                                                                        25
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             33
  REGIONAL LYMPH NODE                                                                                                  93
D14V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(11Q13.3) MUTATED      9   21
  AMP PEAK 14(11Q13.3) WILD-TYPE   67  105
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  FEMALE                            9                             67
  MALE                             21                            105
D14V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(11Q13.3) MUTATED      0   30
  AMP PEAK 14(11Q13.3) WILD-TYPE    3  169
     clus
vv    AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  NO                             0                              3
  YES                           30                            169
                                vv
clus                              M0  M1 M1A M1B M1C
  AMP PEAK 14(11Q13.3) MUTATED    27   0   0   0   0
  AMP PEAK 14(11Q13.3) WILD-TYPE 149   2   2   2   3
D14V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 14(11Q13.3) MUTATED   19  0   3   3  0   1   1   0  1  0
  AMP PEAK 14(11Q13.3) WILD-TYPE 91  2   5  14  1   4  13   6 18  5
D14V7, multiclass
D14V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 14(11Q13.3) MUTATED             1       4        1        2        5
  AMP PEAK 14(11Q13.3) WILD-TYPE           3      13        9       13       15
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 14(11Q13.3) MUTATED           1         2         3         2
  AMP PEAK 14(11Q13.3) WILD-TYPE         8         8        20         7
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 14(11Q13.3) MUTATED            2          4          1        0
  AMP PEAK 14(11Q13.3) WILD-TYPE          5         17         26        7
D14V9, multiclass

Clustering(15) Variable = Amp Peak 15(11q13.4) mutation analysis
D15V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 15(11Q13.4) MUTATED    7  8
  AMP PEAK 15(11Q13.4) WILD-TYPE 52 47
  AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE 
                            15                             99 
  AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE 
                             8                             47 
$`AMP PEAK 15(11Q13.4) MUTATED`
TCGA-D3-A2J6 TCGA-D3-A2JF TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A3Z3 TCGA-EB-A41B 
       10.26        30.87        13.32        24.00         2.86         0.10 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FS-A4F2 
       12.99        28.64        42.84         6.58         1.71         3.22 
TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A26D 
       10.09        15.39        14.70 

$`AMP PEAK 15(11Q13.4) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
        8.38        21.14        11.41         6.35        15.25        45.70 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HW 
        9.30         5.39         4.01         3.88        48.79        35.80 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
       51.12        10.03        39.19        13.68         9.99        44.52 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       36.69        25.15         4.93        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A24D 
        7.00        17.56        14.83         0.53         0.43         1.35 
TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A41A 
        1.28         1.18         0.30         0.13         0.53         0.26 
TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
        0.20         0.39        11.57         6.31         1.12         1.35 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       12.20         4.27        36.07         5.13         8.81         7.96 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       37.97        11.15        38.63         4.41         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
        9.47        12.03         8.12         8.84         9.99         6.48 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        2.43         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A1A1 TCGA-FR-A2OS 
        8.94         3.52        11.11         4.18        78.44        12.10 
TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 
       10.09         5.95        72.16        24.00         8.81        53.82 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 
       10.78         6.41         0.20         1.02         0.13        15.35 
TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A269 
       24.85        15.35        31.33        84.72        16.21         5.59 
TCGA-GN-A26A TCGA-GN-A26C TCGA-IH-A3EA 
       12.16        24.00        12.59 

  AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE 
                          0.10                           0.13 
  AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE 
                         42.84                          98.76 
  AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE 
                         12.99                          10.09 
[1] "0.1 - 42.8 (13.0)" "0.1 - 98.8 (10.1)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 15(11Q13.4) MUTATED"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 15(11Q13.4) WILD-TYPE"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 15(11Q13.4) WILD-TYPE"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 15(11Q13.4) MUTATED"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 15(11Q13.4) MUTATED"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 15(11Q13.4) WILD-TYPE"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 15(11Q13.4) MUTATED"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 15(11Q13.4) WILD-TYPE"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 15(11Q13.4) WILD-TYPE"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 15(11Q13.4) MUTATED"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 15(11Q13.4) MUTATED"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 15(11Q13.4) WILD-TYPE"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 15(11Q13.4) MUTATED"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 15(11Q13.4) WILD-TYPE"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 15(11Q13.4) WILD-TYPE"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 15(11Q13.4) MUTATED"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 15(11Q13.4) MUTATED"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 15(11Q13.4) WILD-TYPE"   "AMP PEAK 15(11Q13.4) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 15(11Q13.4) WILD-TYPE" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 15(11Q13.4) MUTATED" "AMP PEAK 15(11Q13.4) WILD-TYPE" 
[1] "hr=" "1.1"
D15V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK 15(11Q13.4) MUTATED                    6             1
  AMP PEAK 15(11Q13.4) WILD-TYPE                 21            25
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK 15(11Q13.4) MUTATED                                                                                          4
  AMP PEAK 15(11Q13.4) WILD-TYPE                                                                                       33
                                vv
clus                             REGIONAL LYMPH NODE
  AMP PEAK 15(11Q13.4) MUTATED                    18
  AMP PEAK 15(11Q13.4) WILD-TYPE                  94
D15V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK 15(11Q13.4) MUTATED
  DISTANT METASTASIS                                                                                                  6
  PRIMARY TUMOR                                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            4
  REGIONAL LYMPH NODE                                                                                                18
                                                                                          clus
vv                                                                                         AMP PEAK 15(11Q13.4) WILD-TYPE
  DISTANT METASTASIS                                                                                                   21
  PRIMARY TUMOR                                                                                                        25
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             33
  REGIONAL LYMPH NODE                                                                                                  94
D15V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(11Q13.4) MUTATED      9   20
  AMP PEAK 15(11Q13.4) WILD-TYPE   67  106
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  FEMALE                            9                             67
  MALE                             20                            106
D15V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(11Q13.4) MUTATED      0   29
  AMP PEAK 15(11Q13.4) WILD-TYPE    3  170
     clus
vv    AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  NO                             0                              3
  YES                           29                            170
                                vv
clus                              M0  M1 M1A M1B M1C
  AMP PEAK 15(11Q13.4) MUTATED    24   0   1   0   0
  AMP PEAK 15(11Q13.4) WILD-TYPE 152   2   1   2   3
D15V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 15(11Q13.4) MUTATED   19  0   3   3  0   0   0   0  1  0
  AMP PEAK 15(11Q13.4) WILD-TYPE 91  2   5  14  1   5  14   6 18  5
D15V7, multiclass
D15V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 15(11Q13.4) MUTATED             1       4        1        2        3
  AMP PEAK 15(11Q13.4) WILD-TYPE           3      13        9       13       17
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 15(11Q13.4) MUTATED           1         3         3         2
  AMP PEAK 15(11Q13.4) WILD-TYPE         8         7        20         7
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 15(11Q13.4) MUTATED            2          2          1        1
  AMP PEAK 15(11Q13.4) WILD-TYPE          5         19         26        6
D15V9, multiclass

Clustering(16) Variable = Amp Peak 16(12q15) mutation analysis
D16V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 16(12Q15) MUTATED    8 10
  AMP PEAK 16(12Q15) WILD-TYPE 51 45
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          18                           96 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          10                           45 
$`AMP PEAK 16(12Q15) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q9 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CF 
       16.47        70.16        22.55        15.25        45.70        24.00 
TCGA-D3-A3MV TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A3F5 TCGA-EB-A3Y6 TCGA-EE-A29D 
        5.39        48.79        35.80        17.56         0.53        11.15 
TCGA-EE-A2A6 TCGA-ER-A3ET TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
        8.94         6.58        16.21        15.39        12.16        14.70 

$`AMP PEAK 16(12Q15) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 
       32.55        98.76        28.08        10.26         8.38        21.14 
TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D9-A3Z1 
       11.41        30.87         6.35        13.32         9.30         4.01 
TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86         3.88        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
        9.99        44.52        36.69        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24C 
        6.64        19.36         7.00        14.83         0.53         0.43 
TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A41A 
        1.35         1.28         1.18         0.30         0.13         0.26 
TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
        0.10         0.20         0.39        11.57         6.31         1.12 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        1.35        12.20         4.27        36.07         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
        7.96        37.97        38.63         4.41         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
        9.47        12.03         8.12         8.84         9.99         6.48 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        2.43         8.09        11.31        25.28        23.90         9.67 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A 
       78.44         1.71        12.10        10.09         5.95        72.16 
TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC 
       24.00         8.81        53.82         3.22        10.78         6.41 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 
        0.20         1.02         0.13        15.35        24.85        15.35 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A269 TCGA-GN-A26C TCGA-IH-A3EA 
       31.33        84.72        10.09         5.59        24.00        12.59 

  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                        0.53                         0.10 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                       70.16                        98.76 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                       15.80                         9.99 
[1] "0.5 - 70.2 (15.8)" "0.1 - 98.8 (10.0)"
                  TCGA-D3-A1Q1                   TCGA-D3-A1Q5 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A1Q6                   TCGA-D3-A1Q7 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A1Q8                   TCGA-D3-A1Q9 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-D3-A2J6                   TCGA-D3-A2J8 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A2J9                   TCGA-D3-A2JD 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A2JF                   TCGA-D3-A2JK 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A3C6                   TCGA-D3-A3CC 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-D3-A3CE                   TCGA-D3-A3CF 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-D3-A3MO                   TCGA-D3-A3MV 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-D9-A3Z1                   TCGA-D9-A3Z3 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D9-A3Z4                   TCGA-DA-A1HV 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-DA-A1HW                   TCGA-DA-A1HY 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1I0                   TCGA-DA-A1I1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1I2                   TCGA-DA-A1I4 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1I5                   TCGA-DA-A1I7 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1I8                   TCGA-DA-A1IA 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1IB                   TCGA-DA-A1IC 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A3F2                   TCGA-DA-A3F3 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A3F5                   TCGA-DA-A3F8 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A1NK                   TCGA-EB-A24C 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A24D                   TCGA-EB-A3HV 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A3XB                   TCGA-EB-A3XC 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A3XF                   TCGA-EB-A3Y6 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-EB-A41A                   TCGA-EB-A41B 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A42Y                   TCGA-EB-A42Z 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A17X                   TCGA-EE-A17Z 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A181                   TCGA-EE-A182 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A183                   TCGA-EE-A185 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A20B                   TCGA-EE-A20F 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A20H                   TCGA-EE-A29A 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29C                   TCGA-EE-A29D 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-EE-A29E                   TCGA-EE-A29H 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29L                   TCGA-EE-A29M 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29N                   TCGA-EE-A29P 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29Q                   TCGA-EE-A29R 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29S                   TCGA-EE-A29T 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29V                   TCGA-EE-A29X 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A2A0                   TCGA-EE-A2A1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A2A2                   TCGA-EE-A2A5 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A2A6                   TCGA-ER-A19D 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ER-A19F                   TCGA-ER-A19J 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ER-A19L                   TCGA-ER-A19M 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ER-A19N                   TCGA-ER-A1A1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ER-A3ET                   TCGA-ER-A3PL 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FR-A2OS                   TCGA-FR-A3R1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FR-A3YN                   TCGA-FR-A44A 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FS-A1ZN                   TCGA-FS-A1ZR 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FS-A4F0                   TCGA-FS-A4F2 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FS-A4F9                   TCGA-FS-A4FC 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FW-A3I3                   TCGA-FW-A3R5 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FW-A3TU                   TCGA-GN-A261 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A262                   TCGA-GN-A263 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A264                   TCGA-GN-A265 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A266                   TCGA-GN-A267 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-GN-A268                   TCGA-GN-A269 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A26A                   TCGA-GN-A26C 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A26D                   TCGA-IH-A3EA 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A1Q1                   TCGA-D3-A1Q5 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A1Q6                   TCGA-D3-A1Q7 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A1Q8                   TCGA-D3-A1Q9 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-D3-A2J6                   TCGA-D3-A2J8 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A2J9                   TCGA-D3-A2JD 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A2JF                   TCGA-D3-A2JK 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A3C6                   TCGA-D3-A3CC 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-D3-A3CE                   TCGA-D3-A3CF 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-D3-A3MO                   TCGA-D3-A3MV 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-D9-A3Z1                   TCGA-D9-A3Z3 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D9-A3Z4                   TCGA-DA-A1HV 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-DA-A1HW                   TCGA-DA-A1HY 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1I0                   TCGA-DA-A1I1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1I2                   TCGA-DA-A1I4 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1I5                   TCGA-DA-A1I7 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1I8                   TCGA-DA-A1IA 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1IB                   TCGA-DA-A1IC 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A3F2                   TCGA-DA-A3F3 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A3F5                   TCGA-DA-A3F8 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A1NK                   TCGA-EB-A24C 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A24D                   TCGA-EB-A3HV 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A3XB                   TCGA-EB-A3XC 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A3XF                   TCGA-EB-A3Y6 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-EB-A41A                   TCGA-EB-A41B 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A42Y                   TCGA-EB-A42Z 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A17X                   TCGA-EE-A17Z 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A181                   TCGA-EE-A182 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A183                   TCGA-EE-A185 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A20B                   TCGA-EE-A20F 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A20H                   TCGA-EE-A29A 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29C                   TCGA-EE-A29D 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-EE-A29E                   TCGA-EE-A29H 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29L                   TCGA-EE-A29M 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29N                   TCGA-EE-A29P 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29Q                   TCGA-EE-A29R 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29S                   TCGA-EE-A29T 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29V                   TCGA-EE-A29X 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A2A0                   TCGA-EE-A2A1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A2A2                   TCGA-EE-A2A5 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A2A6                   TCGA-ER-A19D 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ER-A19F                   TCGA-ER-A19J 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ER-A19L                   TCGA-ER-A19M 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ER-A19N                   TCGA-ER-A1A1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ER-A3ET                   TCGA-ER-A3PL 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FR-A2OS                   TCGA-FR-A3R1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FR-A3YN                   TCGA-FR-A44A 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FS-A1ZN                   TCGA-FS-A1ZR 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FS-A4F0                   TCGA-FS-A4F2 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FS-A4F9                   TCGA-FS-A4FC 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FW-A3I3                   TCGA-FW-A3R5 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FW-A3TU                   TCGA-GN-A261 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A262                   TCGA-GN-A263 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A264                   TCGA-GN-A265 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A266                   TCGA-GN-A267 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-GN-A268                   TCGA-GN-A269 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A26A                   TCGA-GN-A26C 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A26D                   TCGA-IH-A3EA 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A1Q1                   TCGA-D3-A1Q5 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A1Q6                   TCGA-D3-A1Q7 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A1Q8                   TCGA-D3-A1Q9 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-D3-A2J6                   TCGA-D3-A2J8 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A2J9                   TCGA-D3-A2JD 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A2JF                   TCGA-D3-A2JK 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D3-A3C6                   TCGA-D3-A3CC 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-D3-A3CE                   TCGA-D3-A3CF 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-D3-A3MO                   TCGA-D3-A3MV 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-D9-A3Z1                   TCGA-D9-A3Z3 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-D9-A3Z4                   TCGA-DA-A1HV 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-DA-A1HW                   TCGA-DA-A1HY 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1I0                   TCGA-DA-A1I1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1I2                   TCGA-DA-A1I4 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1I5                   TCGA-DA-A1I7 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1I8                   TCGA-DA-A1IA 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A1IB                   TCGA-DA-A1IC 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A3F2                   TCGA-DA-A3F3 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DA-A3F5                   TCGA-DA-A3F8 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A1NK                   TCGA-EB-A24C 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A24D                   TCGA-EB-A3HV 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A3XB                   TCGA-EB-A3XC 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A3XF                   TCGA-EB-A3Y6 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-EB-A41A                   TCGA-EB-A41B 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EB-A42Y                   TCGA-EB-A42Z 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A17X                   TCGA-EE-A17Z 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A181                   TCGA-EE-A182 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A183                   TCGA-EE-A185 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A20B                   TCGA-EE-A20F 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A20H                   TCGA-EE-A29A 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29C                   TCGA-EE-A29D 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-EE-A29E                   TCGA-EE-A29H 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29L                   TCGA-EE-A29M 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29N                   TCGA-EE-A29P 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29Q                   TCGA-EE-A29R 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29S                   TCGA-EE-A29T 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A29V                   TCGA-EE-A29X 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A2A0                   TCGA-EE-A2A1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A2A2                   TCGA-EE-A2A5 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-EE-A2A6                   TCGA-ER-A19D 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ER-A19F                   TCGA-ER-A19J 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ER-A19L                   TCGA-ER-A19M 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ER-A19N                   TCGA-ER-A1A1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ER-A3ET                   TCGA-ER-A3PL 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FR-A2OS                   TCGA-FR-A3R1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FR-A3YN                   TCGA-FR-A44A 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FS-A1ZN                   TCGA-FS-A1ZR 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FS-A4F0                   TCGA-FS-A4F2 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FS-A4F9                   TCGA-FS-A4FC 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FW-A3I3                   TCGA-FW-A3R5 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FW-A3TU                   TCGA-GN-A261 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A262                   TCGA-GN-A263 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A264                   TCGA-GN-A265 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A266                   TCGA-GN-A267 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-GN-A268                   TCGA-GN-A269 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A26A                   TCGA-GN-A26C 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GN-A26D                   TCGA-IH-A3EA 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
[1] "hr=" "1.2"
D16V2, continuous
                              vv
clus                           DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK 16(12Q15) MUTATED                    2             1
  AMP PEAK 16(12Q15) WILD-TYPE                 25            25
                              vv
clus                           REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK 16(12Q15) MUTATED                                                                                          7
  AMP PEAK 16(12Q15) WILD-TYPE                                                                                       30
                              vv
clus                           REGIONAL LYMPH NODE
  AMP PEAK 16(12Q15) MUTATED                    16
  AMP PEAK 16(12Q15) WILD-TYPE                  96
D16V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK 16(12Q15) MUTATED
  DISTANT METASTASIS                                                                                                2
  PRIMARY TUMOR                                                                                                     1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          7
  REGIONAL LYMPH NODE                                                                                              16
                                                                                          clus
vv                                                                                         AMP PEAK 16(12Q15) WILD-TYPE
  DISTANT METASTASIS                                                                                                 25
  PRIMARY TUMOR                                                                                                      25
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           30
  REGIONAL LYMPH NODE                                                                                                96
D16V4, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 16(12Q15) MUTATED     12   14
  AMP PEAK 16(12Q15) WILD-TYPE   64  112
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  FEMALE                         12                           64
  MALE                           14                          112
D16V5, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 16(12Q15) MUTATED      1   25
  AMP PEAK 16(12Q15) WILD-TYPE    2  174
     clus
vv    AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  NO                           1                            2
  YES                         25                          174
                              vv
clus                            M0  M1 M1A M1B M1C
  AMP PEAK 16(12Q15) MUTATED    24   0   0   0   0
  AMP PEAK 16(12Q15) WILD-TYPE 152   2   2   2   3
D16V6, multiclass
                              vv
clus                           N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 16(12Q15) MUTATED   11  0   4   3  0   2   2   1  3  0
  AMP PEAK 16(12Q15) WILD-TYPE 99  2   4  14  1   3  12   5 16  5
D16V7, multiclass
D16V8, continuous
                              vv
clus                           I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 16(12Q15) MUTATED             1       2        1        1        2
  AMP PEAK 16(12Q15) WILD-TYPE           3      15        9       14       18
                              vv
clus                           STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 16(12Q15) MUTATED           0         1         3         2
  AMP PEAK 16(12Q15) WILD-TYPE         9         9        20         7
                              vv
clus                           STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 16(12Q15) MUTATED            4          4          4        0
  AMP PEAK 16(12Q15) WILD-TYPE          3         17         23        7
D16V9, multiclass

Clustering(17) Variable = Amp Peak 17(13q31.3) mutation analysis
D17V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 17(13Q31.3) MUTATED   15 16
  AMP PEAK 17(13Q31.3) WILD-TYPE 44 39
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                            31                             83 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                            16                             39 
$`AMP PEAK 17(13Q31.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A2J6 TCGA-D3-A2JF TCGA-D3-A3CC TCGA-D3-A3CE 
       16.47        70.16        10.26        30.87        45.70        13.32 
TCGA-D9-A3Z4 TCGA-DA-A1I7 TCGA-DA-A3F3 TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3HV 
        3.88        36.69         7.00         0.43         1.35         1.28 
TCGA-EB-A41B TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29L TCGA-EE-A29P 
        0.10        36.07         8.81         7.96         1.08        12.03 
TCGA-EE-A29R TCGA-EE-A2A5 TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        8.84         9.67         3.52        12.99        28.64        42.84 
TCGA-ER-A3PL TCGA-FR-A44A TCGA-FS-A4F2 TCGA-FW-A3TU TCGA-GN-A267 TCGA-GN-A268 
        1.71        72.16         3.22         0.13        16.21        15.39 
TCGA-GN-A269 
        5.59 

$`AMP PEAK 17(13Q31.3) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 
       32.55        98.76        28.08        22.55         8.38        21.14 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       11.41         6.35        15.25        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA 
       39.19        13.68         9.99        44.52        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A1NK 
       22.36         6.64        19.36        17.56        14.83         0.53 
TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A42Y 
        1.18         0.30         0.13         0.53         0.26         0.20 
TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
        0.39        11.57         6.31         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        4.27         5.13        37.97        11.15        38.63         4.41 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       27.12         9.47         8.12         9.99         6.48         2.43 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-ER-A19F 
        8.09        11.31        25.28        23.90         8.94        11.11 
TCGA-ER-A19J TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN 
        4.18        78.44         6.58        12.10        10.09         5.95 
TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
       24.00         8.81        53.82        10.78         6.41         0.20 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A265 
        1.02        15.35        24.85        15.35        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A26A TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
       10.09        12.16        24.00        14.70        12.59 

  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                          0.10                           0.13 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                         72.16                          98.76 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                          9.67                          11.11 
[1] "0.1 - 72.2 (9.7)"  "0.1 - 98.8 (11.1)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
[1] "hr=" "1.1"
D17V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK 17(13Q31.3) MUTATED                   12             8
  AMP PEAK 17(13Q31.3) WILD-TYPE                 15            18
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK 17(13Q31.3) MUTATED                                                                                         12
  AMP PEAK 17(13Q31.3) WILD-TYPE                                                                                       25
                                vv
clus                             REGIONAL LYMPH NODE
  AMP PEAK 17(13Q31.3) MUTATED                    21
  AMP PEAK 17(13Q31.3) WILD-TYPE                  91
D17V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK 17(13Q31.3) MUTATED
  DISTANT METASTASIS                                                                                                 12
  PRIMARY TUMOR                                                                                                       8
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           12
  REGIONAL LYMPH NODE                                                                                                21
                                                                                          clus
vv                                                                                         AMP PEAK 17(13Q31.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                   15
  PRIMARY TUMOR                                                                                                        18
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             25
  REGIONAL LYMPH NODE                                                                                                  91
D17V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(13Q31.3) MUTATED     20   33
  AMP PEAK 17(13Q31.3) WILD-TYPE   56   93
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  FEMALE                           20                             56
  MALE                             33                             93
D17V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(13Q31.3) MUTATED      0   53
  AMP PEAK 17(13Q31.3) WILD-TYPE    3  146
     clus
vv    AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  NO                             0                              3
  YES                           53                            146
                                vv
clus                              M0  M1 M1A M1B M1C
  AMP PEAK 17(13Q31.3) MUTATED    45   0   1   0   0
  AMP PEAK 17(13Q31.3) WILD-TYPE 131   2   1   2   3
D17V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 17(13Q31.3) MUTATED   29  0   4   5  0   0   3   0  4  1
  AMP PEAK 17(13Q31.3) WILD-TYPE 81  2   4  12  1   5  11   6 15  4
D17V7, multiclass
D17V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 17(13Q31.3) MUTATED             1       5        2        5        3
  AMP PEAK 17(13Q31.3) WILD-TYPE           3      12        8       10       17
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 17(13Q31.3) MUTATED           2         3         8         3
  AMP PEAK 17(13Q31.3) WILD-TYPE         7         7        15         6
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 17(13Q31.3) MUTATED            3          4          6        1
  AMP PEAK 17(13Q31.3) WILD-TYPE          4         17         21        6
D17V9, multiclass

Clustering(18) Variable = Amp Peak 18(15q24.3) mutation analysis
D18V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 18(15Q24.3) MUTATED   12 18
  AMP PEAK 18(15Q24.3) WILD-TYPE 47 37
  AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE 
                            30                             84 
  AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE 
                            18                             37 
$`AMP PEAK 18(15Q24.3) MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q9 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3CE 
       32.55        22.55        21.14        11.41        30.87        13.32 
TCGA-D3-A3MV TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I7 TCGA-DA-A3F3 TCGA-DA-A3F5 
        5.39        48.79        35.80        36.69         7.00        17.56 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A29T 
        1.12        12.20         5.13         8.81        11.15         6.48 
TCGA-EE-A29X TCGA-EE-A2A1 TCGA-ER-A19D TCGA-ER-A19M TCGA-ER-A3ET TCGA-FR-A44A 
        8.09        25.28         3.52        28.64         6.58        72.16 
TCGA-FS-A4F2 TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26A 
        3.22         1.02        31.33        84.72        16.21        12.16 

$`AMP PEAK 18(15Q24.3) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 
       16.47        70.16        98.76        28.08        10.26         8.38 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 
        6.35        15.25        45.70        24.00         9.30         4.01 
TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86         3.88        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
        9.99        44.52        25.15         4.93        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3HV 
       19.36        14.83         0.53         0.43         1.35         1.28 
TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A41B 
        1.18         0.30         0.13         0.53         0.26         0.10 
TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A185 
        0.20         0.39        11.57         6.31         1.35         4.27 
TCGA-EE-A20B TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       36.07         7.96        37.97        38.63         4.41         1.08 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       27.12         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19F 
        2.43        11.31        23.90         9.67         8.94        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FR-A2OS 
        4.18        12.99        42.84        78.44         1.71        12.10 
TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F9 
       10.09         5.95        24.00         8.81        53.82        10.78 
TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 
        6.41         0.20         0.13        15.35        24.85        15.35 
TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
       10.09        15.39         5.59        24.00        14.70        12.59 

  AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE 
                          1.02                           0.10 
  AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE 
                         84.72                          98.76 
  AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE 
                         12.76                          10.01 
[1] "1.0 - 84.7 (12.8)" "0.1 - 98.8 (10.0)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
  "AMP PEAK 18(15Q24.3) MUTATED"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK 18(15Q24.3) MUTATED"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
  "AMP PEAK 18(15Q24.3) MUTATED"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK 18(15Q24.3) MUTATED"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
  "AMP PEAK 18(15Q24.3) MUTATED"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK 18(15Q24.3) MUTATED"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 18(15Q24.3) WILD-TYPE"   "AMP PEAK 18(15Q24.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "AMP PEAK 18(15Q24.3) MUTATED" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"AMP PEAK 18(15Q24.3) WILD-TYPE" "AMP PEAK 18(15Q24.3) WILD-TYPE" 
[1] "hr=" "1"  
D18V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK 18(15Q24.3) MUTATED                    9             1
  AMP PEAK 18(15Q24.3) WILD-TYPE                 18            25
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK 18(15Q24.3) MUTATED                                                                                         10
  AMP PEAK 18(15Q24.3) WILD-TYPE                                                                                       27
                                vv
clus                             REGIONAL LYMPH NODE
  AMP PEAK 18(15Q24.3) MUTATED                    40
  AMP PEAK 18(15Q24.3) WILD-TYPE                  72
D18V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK 18(15Q24.3) MUTATED
  DISTANT METASTASIS                                                                                                  9
  PRIMARY TUMOR                                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           10
  REGIONAL LYMPH NODE                                                                                                40
                                                                                          clus
vv                                                                                         AMP PEAK 18(15Q24.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                   18
  PRIMARY TUMOR                                                                                                        25
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             27
  REGIONAL LYMPH NODE                                                                                                  72
D18V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(15Q24.3) MUTATED     23   37
  AMP PEAK 18(15Q24.3) WILD-TYPE   53   89
        clus
vv       AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE
  FEMALE                           23                             53
  MALE                             37                             89
D18V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(15Q24.3) MUTATED      0   60
  AMP PEAK 18(15Q24.3) WILD-TYPE    3  139
     clus
vv    AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE
  NO                             0                              3
  YES                           60                            139
                                vv
clus                              M0  M1 M1A M1B M1C
  AMP PEAK 18(15Q24.3) MUTATED    52   0   0   1   0
  AMP PEAK 18(15Q24.3) WILD-TYPE 124   2   2   1   3
D18V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 18(15Q24.3) MUTATED   33  0   3   6  1   3   3   0  3  1
  AMP PEAK 18(15Q24.3) WILD-TYPE 77  2   5  11  0   2  11   6 16  4
D18V7, multiclass
D18V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 18(15Q24.3) MUTATED             4       6        4        4        9
  AMP PEAK 18(15Q24.3) WILD-TYPE           0      11        6       11       11
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 18(15Q24.3) MUTATED           2         1         3         2
  AMP PEAK 18(15Q24.3) WILD-TYPE         7         9        20         7
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 18(15Q24.3) MUTATED            4          6          5        0
  AMP PEAK 18(15Q24.3) WILD-TYPE          3         15         22        7
D18V9, multiclass

Clustering(19) Variable = Amp Peak 19(17q25.3) mutation analysis
D19V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 19(17Q25.3) MUTATED   24 18
  AMP PEAK 19(17Q25.3) WILD-TYPE 35 37
  AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE 
                            42                             72 
  AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE 
                            18                             37 
$`AMP PEAK 19(17Q25.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3CC TCGA-D3-A3CF 
       16.47        22.55        11.41        30.87        45.70        24.00 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I7 
        9.30         5.39        48.79        51.12        39.19        36.69 
TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EB-A1NK TCGA-EB-A24D 
        4.93         6.64         7.00        17.56         0.53         1.35 
TCGA-EB-A3Y6 TCGA-EB-A41B TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20F 
        0.53         0.10         1.12         1.35         4.27         5.13 
TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
        8.81        11.15         4.41         1.08         9.47        12.03 
TCGA-EE-A29R TCGA-EE-A29V TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19N TCGA-ER-A3ET 
        8.84         2.43         8.94        11.11        42.84         6.58 
TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FW-A3I3 TCGA-GN-A265 TCGA-GN-A268 TCGA-GN-A26D 
        1.71         5.95         0.20        84.72        15.39        14.70 

$`AMP PEAK 19(17Q25.3) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 
       32.55        70.16        98.76        28.08        10.26         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       21.14         6.35        15.25        13.32         4.01         2.86 
TCGA-D9-A3Z4 TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
        3.88        35.80        10.03        13.68         9.99        44.52 
TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EB-A24C TCGA-EB-A3HV 
       25.15        22.36        19.36        14.83         0.43         1.28 
TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A41A TCGA-EB-A42Y TCGA-EB-A42Z 
        1.18         0.30         0.13         0.26         0.20         0.39 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A29A TCGA-EE-A29C 
       11.57         6.31        12.20        36.07         7.96        37.97 
TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X 
       38.63        27.12         8.12         9.99         6.48         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-ER-A19D TCGA-ER-A19J 
       11.31        25.28        23.90         9.67         3.52         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A44A 
       12.99        28.64        78.44        12.10        10.09        72.16 
TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC 
       24.00         8.81        53.82         3.22        10.78         6.41 
TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A264 
        1.02         0.13        15.35        24.85        15.35        31.33 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C TCGA-IH-A3EA 
       10.09        16.21         5.59        12.16        24.00        12.59 

  AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE 
                          0.10                           0.13 
  AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE 
                         84.72                          98.76 
  AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE 
                         8.890                         11.835 
[1] "0.1 - 84.7 (8.9)"  "0.1 - 98.8 (11.8)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "AMP PEAK 19(17Q25.3) MUTATED"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "AMP PEAK 19(17Q25.3) MUTATED"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "AMP PEAK 19(17Q25.3) MUTATED"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 19(17Q25.3) MUTATED"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "AMP PEAK 19(17Q25.3) MUTATED"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "AMP PEAK 19(17Q25.3) MUTATED"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "AMP PEAK 19(17Q25.3) MUTATED"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 19(17Q25.3) MUTATED"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "AMP PEAK 19(17Q25.3) MUTATED"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "AMP PEAK 19(17Q25.3) MUTATED"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "AMP PEAK 19(17Q25.3) MUTATED"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 19(17Q25.3) MUTATED"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 19(17Q25.3) WILD-TYPE"   "AMP PEAK 19(17Q25.3) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 19(17Q25.3) WILD-TYPE" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 19(17Q25.3) MUTATED" "AMP PEAK 19(17Q25.3) WILD-TYPE" 
[1] "hr=" "1"  
D19V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK 19(17Q25.3) MUTATED                   10             4
  AMP PEAK 19(17Q25.3) WILD-TYPE                 17            22
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK 19(17Q25.3) MUTATED                                                                                         13
  AMP PEAK 19(17Q25.3) WILD-TYPE                                                                                       24
                                vv
clus                             REGIONAL LYMPH NODE
  AMP PEAK 19(17Q25.3) MUTATED                    43
  AMP PEAK 19(17Q25.3) WILD-TYPE                  69
D19V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK 19(17Q25.3) MUTATED
  DISTANT METASTASIS                                                                                                 10
  PRIMARY TUMOR                                                                                                       4
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           13
  REGIONAL LYMPH NODE                                                                                                43
                                                                                          clus
vv                                                                                         AMP PEAK 19(17Q25.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                   17
  PRIMARY TUMOR                                                                                                        22
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             24
  REGIONAL LYMPH NODE                                                                                                  69
D19V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q25.3) MUTATED     23   47
  AMP PEAK 19(17Q25.3) WILD-TYPE   53   79
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  FEMALE                           23                             53
  MALE                             47                             79
D19V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q25.3) MUTATED      0   70
  AMP PEAK 19(17Q25.3) WILD-TYPE    3  129
     clus
vv    AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  NO                             0                              3
  YES                           70                            129
                                vv
clus                              M0  M1 M1A M1B M1C
  AMP PEAK 19(17Q25.3) MUTATED    63   1   1   1   0
  AMP PEAK 19(17Q25.3) WILD-TYPE 113   1   1   1   3
D19V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 19(17Q25.3) MUTATED   39  0   3   7  0   3   4   3  8  0
  AMP PEAK 19(17Q25.3) WILD-TYPE 71  2   5  10  1   2  10   3 11  5
D19V7, multiclass
D19V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 19(17Q25.3) MUTATED             1       6        5        3        8
  AMP PEAK 19(17Q25.3) WILD-TYPE           3      11        5       12       12
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 19(17Q25.3) MUTATED           1         3         8         3
  AMP PEAK 19(17Q25.3) WILD-TYPE         8         7        15         6
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 19(17Q25.3) MUTATED            2          9         12        2
  AMP PEAK 19(17Q25.3) WILD-TYPE          5         12         15        5
D19V9, multiclass

Clustering(20) Variable = Amp Peak 20(19p13.2) mutation analysis
D20V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 20(19P13.2) MUTATED   11 10
  AMP PEAK 20(19P13.2) WILD-TYPE 48 45
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            21                             93 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            10                             45 
$`AMP PEAK 20(19P13.2) MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A2JF TCGA-D3-A3MV TCGA-DA-A1I0 TCGA-DA-A1IC 
       32.55        70.16        30.87         5.39        10.03         6.64 
TCGA-DA-A3F5 TCGA-EB-A42Z TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29R 
       17.56         0.39        38.63         1.08        12.03         8.84 
TCGA-ER-A19J TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A4F2 TCGA-FW-A3I3 
        4.18         6.58         1.71         5.95         3.22         0.20 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26C 
       10.09        16.21        24.00 

$`AMP PEAK 20(19P13.2) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J8 
       16.47        98.76        28.08        22.55        10.26         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
       21.14        11.41         6.35        15.25        45.70        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HV 
       24.00         9.30         4.01         2.86         3.88        48.79 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
       35.80        51.12        39.19        13.68         9.99        44.52 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15         4.93        22.36        19.36         7.00 
TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XB 
       14.83         0.53         0.43         1.35         1.28         1.18 
TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y 
        0.30         0.13         0.53         0.26         0.10         0.20 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       11.57         6.31         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       36.07         5.13         8.81         7.96        37.97        11.15 
TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T 
        4.41        27.12         9.47         8.12         9.99         6.48 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        2.43         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        8.94         3.52        11.11        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR 
       78.44        12.10        10.09        72.16        24.00         8.81 
TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 
       53.82        10.78         6.41         1.02         0.13        15.35 
TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A268 TCGA-GN-A269 
       24.85        15.35        31.33        84.72        15.39         5.59 
TCGA-GN-A26A TCGA-GN-A26D TCGA-IH-A3EA 
       12.16        14.70        12.59 

  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                           0.2                            0.1 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                         70.16                          98.76 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                          8.84                          11.15 
[1] "0.2 - 70.2 (8.8)"  "0.1 - 98.8 (11.2)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
[1] "hr=" "1.1"
D20V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK 20(19P13.2) MUTATED                    7             3
  AMP PEAK 20(19P13.2) WILD-TYPE                 20            23
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK 20(19P13.2) MUTATED                                                                                          9
  AMP PEAK 20(19P13.2) WILD-TYPE                                                                                       28
                                vv
clus                             REGIONAL LYMPH NODE
  AMP PEAK 20(19P13.2) MUTATED                    19
  AMP PEAK 20(19P13.2) WILD-TYPE                  93
D20V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK 20(19P13.2) MUTATED
  DISTANT METASTASIS                                                                                                  7
  PRIMARY TUMOR                                                                                                       3
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            9
  REGIONAL LYMPH NODE                                                                                                19
                                                                                          clus
vv                                                                                         AMP PEAK 20(19P13.2) WILD-TYPE
  DISTANT METASTASIS                                                                                                   20
  PRIMARY TUMOR                                                                                                        23
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             28
  REGIONAL LYMPH NODE                                                                                                  93
D20V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) MUTATED     12   26
  AMP PEAK 20(19P13.2) WILD-TYPE   64  100
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  FEMALE                           12                             64
  MALE                             26                            100
D20V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) MUTATED      1   37
  AMP PEAK 20(19P13.2) WILD-TYPE    2  162
     clus
vv    AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  NO                             1                              2
  YES                           37                            162
                                vv
clus                              M0  M1 M1A M1B M1C
  AMP PEAK 20(19P13.2) MUTATED    31   2   2   0   0
  AMP PEAK 20(19P13.2) WILD-TYPE 145   0   0   2   3
D20V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 20(19P13.2) MUTATED   20  0   2   5  0   1   1   2  4  0
  AMP PEAK 20(19P13.2) WILD-TYPE 90  2   6  12  1   4  13   4 15  5
D20V7, multiclass
D20V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 20(19P13.2) MUTATED             2       6        1        2        3
  AMP PEAK 20(19P13.2) WILD-TYPE           2      11        9       13       17
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 20(19P13.2) MUTATED           2         0         2         2
  AMP PEAK 20(19P13.2) WILD-TYPE         7        10        21         7
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 20(19P13.2) MUTATED            2          3          7        3
  AMP PEAK 20(19P13.2) WILD-TYPE          5         18         20        4
D20V9, multiclass

Clustering(21) Variable = Amp Peak 21(20q13.2) mutation analysis
D21V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 21(20Q13.2) MUTATED   25 26
  AMP PEAK 21(20Q13.2) WILD-TYPE 34 29
  AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE 
                            51                             63 
  AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE 
                            26                             29 
$`AMP PEAK 21(20Q13.2) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3C6 
       16.47        32.55        22.55        11.41        30.87        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3MV TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
       45.70        13.32         5.39         2.86        48.79        35.80 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-DA-A1IA TCGA-DA-A3F5 
       10.03        39.19        13.68        36.69         4.93        17.56 
TCGA-EB-A1NK TCGA-EB-A24D TCGA-EB-A3XC TCGA-EB-A3Y6 TCGA-EE-A183 TCGA-EE-A20B 
        0.53         1.35         0.30         0.53        12.20        36.07 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29P 
        8.81         7.96        11.15        38.63         1.08        12.03 
TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19J 
        8.84         6.48        25.28         9.67         8.94         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A4F2 
       12.99        28.64         1.71         5.95        72.16         3.22 
TCGA-FW-A3I3 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A269 
        0.20        31.33        84.72        16.21        15.39         5.59 
TCGA-GN-A26A TCGA-GN-A26C TCGA-GN-A26D 
       12.16        24.00        14.70 

$`AMP PEAK 21(20Q13.2) WILD-TYPE`
TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 
       70.16        98.76        28.08        10.26         8.38        21.14 
TCGA-D3-A2JK TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z4 TCGA-DA-A1HY 
        6.35        24.00         9.30         4.01         3.88        51.12 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        44.52        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EB-A24C TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XF 
        7.00        14.83         0.43         1.28         1.18         0.13 
TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A17Z 
        0.26         0.10         0.20         0.39        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29H 
        1.12         1.35         4.27         5.13        37.97         4.41 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
       27.12         9.47         8.12         9.99         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19N TCGA-ER-A1A1 
       11.31        23.90         3.52        11.11        42.84        78.44 
TCGA-ER-A3ET TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 
        6.58        12.10        10.09        24.00         8.81        53.82 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 
       10.78         6.41         1.02         0.13        15.35        24.85 
TCGA-GN-A263 TCGA-GN-A266 TCGA-IH-A3EA 
       15.35        10.09        12.59 

  AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE 
                           0.2                            0.1 
  AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE 
                         84.72                          98.76 
  AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE 
                         12.20                           9.99 
[1] "0.2 - 84.7 (12.2)" "0.1 - 98.8 (10.0)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 21(20Q13.2) WILD-TYPE" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 21(20Q13.2) WILD-TYPE"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "AMP PEAK 21(20Q13.2) MUTATED"   "AMP PEAK 21(20Q13.2) MUTATED" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 21(20Q13.2) MUTATED" "AMP PEAK 21(20Q13.2) WILD-TYPE" 
[1] "hr=" "1.1"
D21V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK 21(20Q13.2) MUTATED                   17            10
  AMP PEAK 21(20Q13.2) WILD-TYPE                 10            16
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK 21(20Q13.2) MUTATED                                                                                         18
  AMP PEAK 21(20Q13.2) WILD-TYPE                                                                                       19
                                vv
clus                             REGIONAL LYMPH NODE
  AMP PEAK 21(20Q13.2) MUTATED                    57
  AMP PEAK 21(20Q13.2) WILD-TYPE                  55
D21V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK 21(20Q13.2) MUTATED
  DISTANT METASTASIS                                                                                                 17
  PRIMARY TUMOR                                                                                                      10
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           18
  REGIONAL LYMPH NODE                                                                                                57
                                                                                          clus
vv                                                                                         AMP PEAK 21(20Q13.2) WILD-TYPE
  DISTANT METASTASIS                                                                                                   10
  PRIMARY TUMOR                                                                                                        16
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             19
  REGIONAL LYMPH NODE                                                                                                  55
D21V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(20Q13.2) MUTATED     36   66
  AMP PEAK 21(20Q13.2) WILD-TYPE   40   60
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  FEMALE                           36                             40
  MALE                             66                             60
D21V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(20Q13.2) MUTATED      1  101
  AMP PEAK 21(20Q13.2) WILD-TYPE    2   98
     clus
vv    AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  NO                             1                              2
  YES                          101                             98
                                vv
clus                             M0 M1 M1A M1B M1C
  AMP PEAK 21(20Q13.2) MUTATED   89  2   2   1   0
  AMP PEAK 21(20Q13.2) WILD-TYPE 87  0   0   1   3
D21V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 21(20Q13.2) MUTATED   57  1   5  10  0   3   6   2  8  3
  AMP PEAK 21(20Q13.2) WILD-TYPE 53  1   3   7  1   2   8   4 11  2
D21V7, multiclass
D21V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 21(20Q13.2) MUTATED             4      12        7        7        8
  AMP PEAK 21(20Q13.2) WILD-TYPE           0       5        3        8       12
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 21(20Q13.2) MUTATED           3         2        13         4
  AMP PEAK 21(20Q13.2) WILD-TYPE         6         8        10         5
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 21(20Q13.2) MUTATED            4         12         13        3
  AMP PEAK 21(20Q13.2) WILD-TYPE          3          9         14        4
D21V9, multiclass

Clustering(22) Variable = Amp Peak 22(22q13.2) mutation analysis
D22V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 22(22Q13.2) MUTATED   24 22
  AMP PEAK 22(22Q13.2) WILD-TYPE 35 33
  AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE 
                            46                             68 
  AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE 
                            22                             33 
$`AMP PEAK 22(22Q13.2) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q9 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A3MV 
       16.47        22.55        45.70        13.32         9.30         5.39 
TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        4.01        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F5 TCGA-EB-A1NK 
       36.69        25.15         4.93        22.36        17.56         0.53 
TCGA-EB-A24D TCGA-EB-A3Y6 TCGA-EE-A17Z TCGA-EE-A20H TCGA-EE-A29L TCGA-EE-A29M 
        1.35         0.53         6.31         8.81         1.08        27.12 
TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29X TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        9.47         8.84         8.09        23.90         9.67         8.94 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A3ET TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A4F2 
       12.99        28.64         6.58         5.95        72.16         3.22 
TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
        0.20         0.13        31.33        84.72        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
       12.16        24.00        14.70        12.59 

$`AMP PEAK 22(22Q13.2) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 
       32.55        70.16        98.76        28.08        10.26         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CF 
       21.14        11.41        30.87         6.35        15.25        24.00 
TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1IC 
        2.86         3.88        13.68         9.99        44.52         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EB-A24C TCGA-EB-A3HV TCGA-EB-A3XB 
       19.36         7.00        14.83         0.43         1.28         1.18 
TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z 
        0.30         0.13         0.26         0.10         0.20         0.39 
TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         1.12         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        5.13         7.96        37.97        11.15        38.63         4.41 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A0 
       12.03         8.12         9.99         6.48         2.43        11.31 
TCGA-EE-A2A1 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19N TCGA-ER-A1A1 
       25.28         3.52        11.11         4.18        42.84        78.44 
TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 
        1.71        12.10        10.09        24.00         8.81        53.82 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 
       10.78         6.41         1.02        15.35        24.85        15.35 
TCGA-GN-A266 TCGA-GN-A269 
       10.09         5.59 

  AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE 
                          0.13                           0.10 
  AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE 
                         84.72                          98.76 
  AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE 
                         12.79                          10.09 
[1] "0.1 - 84.7 (12.8)" "0.1 - 98.8 (10.1)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"AMP PEAK 22(22Q13.2) WILD-TYPE" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"AMP PEAK 22(22Q13.2) WILD-TYPE"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "AMP PEAK 22(22Q13.2) MUTATED" "AMP PEAK 22(22Q13.2) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "AMP PEAK 22(22Q13.2) MUTATED"   "AMP PEAK 22(22Q13.2) MUTATED" 
[1] "hr=" "1.3"
D22V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  AMP PEAK 22(22Q13.2) MUTATED                   15             9
  AMP PEAK 22(22Q13.2) WILD-TYPE                 12            17
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  AMP PEAK 22(22Q13.2) MUTATED                                                                                         16
  AMP PEAK 22(22Q13.2) WILD-TYPE                                                                                       21
                                vv
clus                             REGIONAL LYMPH NODE
  AMP PEAK 22(22Q13.2) MUTATED                    48
  AMP PEAK 22(22Q13.2) WILD-TYPE                  64
D22V3, multiclass
                                                                                          clus
vv                                                                                         AMP PEAK 22(22Q13.2) MUTATED
  DISTANT METASTASIS                                                                                                 15
  PRIMARY TUMOR                                                                                                       9
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           16
  REGIONAL LYMPH NODE                                                                                                48
                                                                                          clus
vv                                                                                         AMP PEAK 22(22Q13.2) WILD-TYPE
  DISTANT METASTASIS                                                                                                   12
  PRIMARY TUMOR                                                                                                        17
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             21
  REGIONAL LYMPH NODE                                                                                                  64
D22V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(22Q13.2) MUTATED     36   52
  AMP PEAK 22(22Q13.2) WILD-TYPE   40   74
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  FEMALE                           36                             40
  MALE                             52                             74
D22V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(22Q13.2) MUTATED      1   87
  AMP PEAK 22(22Q13.2) WILD-TYPE    2  112
     clus
vv    AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  NO                             1                              2
  YES                           87                            112
                                vv
clus                              M0  M1 M1A M1B M1C
  AMP PEAK 22(22Q13.2) MUTATED    75   1   1   1   1
  AMP PEAK 22(22Q13.2) WILD-TYPE 101   1   1   1   2
D22V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 22(22Q13.2) MUTATED   42  0   5   7  0   4   6   5  9  2
  AMP PEAK 22(22Q13.2) WILD-TYPE 68  2   3  10  1   1   8   1 10  3
D22V7, multiclass
D22V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 22(22Q13.2) MUTATED             2       6        4        5        7
  AMP PEAK 22(22Q13.2) WILD-TYPE           2      11        6       10       13
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 22(22Q13.2) MUTATED           4         3        10         4
  AMP PEAK 22(22Q13.2) WILD-TYPE         5         7        13         5
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 22(22Q13.2) MUTATED            5         12         13        2
  AMP PEAK 22(22Q13.2) WILD-TYPE          2          9         14        5
D22V9, multiclass

Clustering(23) Variable = Del Peak  1(1p36.31) mutation analysis
D23V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.31) MUTATED   17 10
  DEL PEAK  1(1P36.31) WILD-TYPE 42 45
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            27                             87 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            10                             45 
$`DEL PEAK  1(1P36.31) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3MV TCGA-DA-A1I0 
       16.47         6.35        15.25        13.32         5.39        10.03 
TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A24C TCGA-EB-A24D 
       13.68        36.69        17.56        14.83         0.43         1.35 
TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A42Z TCGA-EE-A182 TCGA-EE-A20F TCGA-EE-A20H 
        0.53         0.26         0.39         1.35         5.13         8.81 
TCGA-EE-A29D TCGA-EE-A29R TCGA-ER-A19D TCGA-ER-A3PL TCGA-FS-A4F0 TCGA-FS-A4FC 
       11.15         8.84         3.52         1.71        53.82         6.41 
TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A26D 
        0.20         0.13        14.70 

$`DEL PEAK  1(1P36.31) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       32.55        70.16        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3CC TCGA-D3-A3CF 
        8.38        21.14        11.41        30.87        45.70        24.00 
TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HW 
        9.30         4.01         2.86         3.88        48.79        35.80 
TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA 
       51.12        39.19         9.99        44.52        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-EB-A1NK TCGA-EB-A3HV 
       22.36         6.64        19.36         7.00         0.53         1.28 
TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A41B TCGA-EB-A42Y TCGA-EE-A17X 
        1.18         0.30         0.13         0.10         0.20        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A29A 
        6.31         1.12        12.20         4.27        36.07         7.96 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       37.97        38.63         4.41         1.08        27.12         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       12.03         8.12         9.99         6.48         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19F 
       11.31        25.28        23.90         9.67         8.94        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR 
       12.10        10.09         5.95        72.16        24.00         8.81 
TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 
        3.22        10.78         1.02        15.35        24.85        15.35 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A269 
       31.33        84.72        10.09        16.21        15.39         5.59 
TCGA-GN-A26A TCGA-GN-A26C TCGA-IH-A3EA 
       12.16        24.00        12.59 

  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                          0.13                           0.10 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                         53.82                          98.76 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                          6.41                          11.41 
[1] "0.1 - 53.8 (6.4)"  "0.1 - 98.8 (11.4)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
[1] "hr=" "1.2"
D23V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK  1(1P36.31) MUTATED                    9             7
  DEL PEAK  1(1P36.31) WILD-TYPE                 18            19
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK  1(1P36.31) MUTATED                                                                                         11
  DEL PEAK  1(1P36.31) WILD-TYPE                                                                                       26
                                vv
clus                             REGIONAL LYMPH NODE
  DEL PEAK  1(1P36.31) MUTATED                    27
  DEL PEAK  1(1P36.31) WILD-TYPE                  85
D23V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK  1(1P36.31) MUTATED
  DISTANT METASTASIS                                                                                                  9
  PRIMARY TUMOR                                                                                                       7
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           11
  REGIONAL LYMPH NODE                                                                                                27
                                                                                          clus
vv                                                                                         DEL PEAK  1(1P36.31) WILD-TYPE
  DISTANT METASTASIS                                                                                                   18
  PRIMARY TUMOR                                                                                                        19
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             26
  REGIONAL LYMPH NODE                                                                                                  85
D23V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.31) MUTATED     24   30
  DEL PEAK  1(1P36.31) WILD-TYPE   52   96
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  FEMALE                           24                             52
  MALE                             30                             96
D23V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.31) MUTATED      0   54
  DEL PEAK  1(1P36.31) WILD-TYPE    3  145
     clus
vv    DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  NO                             0                              3
  YES                           54                            145
                                vv
clus                              M0  M1 M1A M1B M1C
  DEL PEAK  1(1P36.31) MUTATED    46   1   2   0   0
  DEL PEAK  1(1P36.31) WILD-TYPE 130   1   0   2   3
D23V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  1(1P36.31) MUTATED   30  0   1   7  0   1   6   0  3  2
  DEL PEAK  1(1P36.31) WILD-TYPE 80  2   7  10  1   4   8   6 16  3
D23V7, multiclass
D23V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  1(1P36.31) MUTATED             1       5        2        4        7
  DEL PEAK  1(1P36.31) WILD-TYPE           3      12        8       11       13
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  1(1P36.31) MUTATED           3         2         5         3
  DEL PEAK  1(1P36.31) WILD-TYPE         6         8        18         6
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  1(1P36.31) MUTATED            0          5         10        2
  DEL PEAK  1(1P36.31) WILD-TYPE          7         16         17        5
D23V9, multiclass

Clustering(24) Variable = Del Peak  2(1p22.1) mutation analysis
D24V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(1P22.1) MUTATED   18 15
  DEL PEAK  2(1P22.1) WILD-TYPE 41 40
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           33                            81 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           15                            40 
$`DEL PEAK  2(1P22.1) MUTATED`
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3CC TCGA-D3-A3CE 
       28.08        22.55        10.26        11.41        45.70        13.32 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z3 TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I7 
        9.30         5.39         2.86        10.03        13.68        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A24C TCGA-EB-A24D 
       25.15         4.93        17.56        14.83         0.43         1.35 
TCGA-EB-A3HV TCGA-EB-A3Y6 TCGA-EB-A42Z TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29C 
        1.28         0.53         0.39        36.07         8.81        37.97 
TCGA-EE-A29D TCGA-EE-A29R TCGA-EE-A29T TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A19M 
       11.15         8.84         6.48         3.52        12.99        28.64 
TCGA-ER-A3PL TCGA-GN-A262 TCGA-GN-A26D 
        1.71        24.85        14.70 

$`DEL PEAK  2(1P22.1) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A2J9 
       16.47        32.55        70.16        98.76         8.38        21.14 
TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D9-A3Z1 TCGA-D9-A3Z4 
       30.87         6.35        15.25        24.00         4.01         3.88 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 
       48.79        35.80        51.12        39.19         9.99        44.52 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-EB-A1NK TCGA-EB-A3XB 
       22.36         6.64        19.36         7.00         0.53         1.18 
TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EE-A17X 
        0.30         0.13         0.26         0.10         0.20        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F 
        6.31         1.12         1.35        12.20         4.27         5.13 
TCGA-EE-A29A TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
        7.96        38.63         4.41         1.08        27.12         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       12.03         8.12         9.99         2.43         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J 
       25.28        23.90         9.67         8.94        11.11         4.18 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN 
       42.84        78.44         6.58        12.10        10.09         5.95 
TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 
       72.16        24.00         8.81        53.82         3.22        10.78 
TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A263 
        6.41         0.20         1.02         0.13        15.35        15.35 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A269 
       31.33        84.72        10.09        16.21        15.39         5.59 
TCGA-GN-A26A TCGA-GN-A26C TCGA-IH-A3EA 
       12.16        24.00        12.59 

  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                         0.39                          0.10 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                        45.70                         98.76 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                        11.15                         10.09 
[1] "0.4 - 45.7 (11.2)" "0.1 - 98.8 (10.1)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
  "DEL PEAK  2(1P22.1) MUTATED"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  2(1P22.1) WILD-TYPE"   "DEL PEAK  2(1P22.1) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  2(1P22.1) WILD-TYPE" "DEL PEAK  2(1P22.1) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "DEL PEAK  2(1P22.1) MUTATED" "DEL PEAK  2(1P22.1) WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK  2(1P22.1) MUTATED                    5             6
  DEL PEAK  2(1P22.1) WILD-TYPE                 22            20
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK  2(1P22.1) MUTATED                                                                                         13
  DEL PEAK  2(1P22.1) WILD-TYPE                                                                                       24
                               vv
clus                            REGIONAL LYMPH NODE
  DEL PEAK  2(1P22.1) MUTATED                    29
  DEL PEAK  2(1P22.1) WILD-TYPE                  83
D24V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK  2(1P22.1) MUTATED
  DISTANT METASTASIS                                                                                                 5
  PRIMARY TUMOR                                                                                                      6
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          13
  REGIONAL LYMPH NODE                                                                                               29
                                                                                          clus
vv                                                                                         DEL PEAK  2(1P22.1) WILD-TYPE
  DISTANT METASTASIS                                                                                                  22
  PRIMARY TUMOR                                                                                                       20
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            24
  REGIONAL LYMPH NODE                                                                                                 83
D24V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED     21   32
  DEL PEAK  2(1P22.1) WILD-TYPE   55   94
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  FEMALE                          21                            55
  MALE                            32                            94
D24V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED      0   53
  DEL PEAK  2(1P22.1) WILD-TYPE    3  146
     clus
vv    DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  NO                            0                             3
  YES                          53                           146
                               vv
clus                             M0  M1 M1A M1B M1C
  DEL PEAK  2(1P22.1) MUTATED    45   0   2   1   0
  DEL PEAK  2(1P22.1) WILD-TYPE 131   2   0   1   3
D24V6, multiclass
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  2(1P22.1) MUTATED   23  0   1   9  0   3   5   2  4  2
  DEL PEAK  2(1P22.1) WILD-TYPE 87  2   7   8  1   2   9   4 15  3
D24V7, multiclass
D24V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  2(1P22.1) MUTATED             0       5        1        3        7
  DEL PEAK  2(1P22.1) WILD-TYPE           4      12        9       12       13
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  2(1P22.1) MUTATED           0         2         5         4
  DEL PEAK  2(1P22.1) WILD-TYPE         9         8        18         5
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  2(1P22.1) MUTATED            0         10          9        2
  DEL PEAK  2(1P22.1) WILD-TYPE          7         11         18        5
D24V9, multiclass

Clustering(25) Variable = Del Peak  3(2q37.3) mutation analysis
D25V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(2Q37.3) MUTATED   17 10
  DEL PEAK  3(2Q37.3) WILD-TYPE 42 45
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           27                            87 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           10                            45 
$`DEL PEAK  3(2Q37.3) MUTATED`
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-DA-A1I0 TCGA-DA-A1IA TCGA-EB-A24C 
       11.41         6.35        15.25        10.03         4.93         0.43 
TCGA-EB-A24D TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        1.35         1.18         0.30        36.07         5.13         8.81 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29P TCGA-EE-A29Q TCGA-ER-A3ET 
       37.97        11.15        38.63        12.03         8.12         6.58 
TCGA-ER-A3PL TCGA-FR-A44A TCGA-FS-A4F0 TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A264 
        1.71        72.16        53.82         0.20         0.13        31.33 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26D 
       10.09        16.21        14.70 

$`DEL PEAK  3(2Q37.3) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A3CC TCGA-D3-A3CE 
       10.26         8.38        21.14        30.87        45.70        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 
       24.00         9.30         5.39         4.01         2.86         3.88 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       48.79        35.80        51.12        39.19        13.68         9.99 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       44.52        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A3HV TCGA-EB-A3XF 
        7.00        17.56        14.83         0.53         1.28         0.13 
TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X 
        0.53         0.26         0.10         0.20         0.39        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A29A 
        6.31         1.12         1.35        12.20         4.27         7.96 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29S 
        4.41         1.08        27.12         9.47         8.84         9.99 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        6.48         2.43         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN 
       28.64        42.84        78.44        12.10        10.09         5.95 
TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 
       24.00         8.81         3.22        10.78         6.41         1.02 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A265 TCGA-GN-A268 TCGA-GN-A269 
       15.35        24.85        15.35        84.72        15.39         5.59 
TCGA-GN-A26A TCGA-GN-A26C TCGA-IH-A3EA 
       12.16        24.00        12.59 

  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                         0.13                          0.10 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                        72.16                         98.76 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                        10.03                         11.11 
[1] "0.1 - 72.2 (10.0)" "0.1 - 98.8 (11.1)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
[1] "hr=" "1.2"
D25V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK  3(2Q37.3) MUTATED                    9             5
  DEL PEAK  3(2Q37.3) WILD-TYPE                 18            21
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK  3(2Q37.3) MUTATED                                                                                         13
  DEL PEAK  3(2Q37.3) WILD-TYPE                                                                                       24
                               vv
clus                            REGIONAL LYMPH NODE
  DEL PEAK  3(2Q37.3) MUTATED                    21
  DEL PEAK  3(2Q37.3) WILD-TYPE                  91
D25V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK  3(2Q37.3) MUTATED
  DISTANT METASTASIS                                                                                                 9
  PRIMARY TUMOR                                                                                                      5
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          13
  REGIONAL LYMPH NODE                                                                                               21
                                                                                          clus
vv                                                                                         DEL PEAK  3(2Q37.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                  18
  PRIMARY TUMOR                                                                                                       21
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            24
  REGIONAL LYMPH NODE                                                                                                 91
D25V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED     20   28
  DEL PEAK  3(2Q37.3) WILD-TYPE   56   98
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  FEMALE                          20                            56
  MALE                            28                            98
D25V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED      1   47
  DEL PEAK  3(2Q37.3) WILD-TYPE    2  152
     clus
vv    DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  NO                            1                             2
  YES                          47                           152
                               vv
clus                             M0  M1 M1A M1B M1C
  DEL PEAK  3(2Q37.3) MUTATED    36   1   2   1   0
  DEL PEAK  3(2Q37.3) WILD-TYPE 140   1   0   1   3
D25V6, multiclass
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  3(2Q37.3) MUTATED   27  0   2   5  0   0   3   1  2  2
  DEL PEAK  3(2Q37.3) WILD-TYPE 83  2   6  12  1   5  11   5 17  3
D25V7, multiclass
D25V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  3(2Q37.3) MUTATED             1       3        1        3        9
  DEL PEAK  3(2Q37.3) WILD-TYPE           3      14        9       12       11
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  3(2Q37.3) MUTATED           1         4         5         1
  DEL PEAK  3(2Q37.3) WILD-TYPE         8         6        18         8
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  3(2Q37.3) MUTATED            2          3          4        2
  DEL PEAK  3(2Q37.3) WILD-TYPE          5         18         23        5
D25V9, multiclass

Clustering(26) Variable = Del Peak  4(3p26.1) mutation analysis
D26V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(3P26.1) MUTATED   10  8
  DEL PEAK  4(3P26.1) WILD-TYPE 49 47
  DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE 
                           18                            96 
  DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE 
                            8                            47 
$`DEL PEAK  4(3P26.1) MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A3C6 TCGA-D9-A3Z3 TCGA-DA-A1HW 
       32.55        98.76        22.55        15.25         2.86        35.80 
TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-EB-A24C TCGA-EE-A20F TCGA-EE-A29P 
       13.68        44.52        36.69         0.43         5.13        12.03 
TCGA-EE-A29V TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A267 
        2.43        72.16        24.00         0.13        24.85        16.21 

$`DEL PEAK  4(3P26.1) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 
       16.47        70.16        28.08        10.26         8.38        21.14 
TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF 
       11.41        30.87         6.35        45.70        13.32        24.00 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HY 
        9.30         5.39         4.01         3.88        48.79        51.12 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
       10.03        39.19         9.99        25.15         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A1NK 
        6.64        19.36         7.00        17.56        14.83         0.53 
TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A3Y6 
        1.35         1.28         1.18         0.30         0.13         0.53 
TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A17Z 
        0.26         0.10         0.20         0.39        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H 
        1.12         1.35        12.20         4.27        36.07         8.81 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        7.96        37.97        11.15        38.63         4.41         1.08 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       27.12         9.47         8.12         8.84         9.99         6.48 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN 
       78.44         6.58         1.71        12.10        10.09         5.95 
TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
        8.81        53.82         3.22        10.78         6.41         0.20 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        1.02        15.35        15.35        31.33        84.72        10.09 
TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
       15.39         5.59        12.16        24.00        14.70        12.59 

  DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE 
                         0.13                          0.10 
  DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE 
                        98.76                         84.72 
  DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE 
                        19.38                         10.01 
[1] "0.1 - 98.8 (19.4)" "0.1 - 84.7 (10.0)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "DEL PEAK  4(3P26.1) MUTATED"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "DEL PEAK  4(3P26.1) MUTATED"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "DEL PEAK  4(3P26.1) MUTATED"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  4(3P26.1) MUTATED" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"DEL PEAK  4(3P26.1) WILD-TYPE"   "DEL PEAK  4(3P26.1) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  4(3P26.1) WILD-TYPE" "DEL PEAK  4(3P26.1) WILD-TYPE" 
[1] "hr=" "1.7"
D26V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK  4(3P26.1) MUTATED                    5             2
  DEL PEAK  4(3P26.1) WILD-TYPE                 22            24
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK  4(3P26.1) MUTATED                                                                                          5
  DEL PEAK  4(3P26.1) WILD-TYPE                                                                                       32
                               vv
clus                            REGIONAL LYMPH NODE
  DEL PEAK  4(3P26.1) MUTATED                    18
  DEL PEAK  4(3P26.1) WILD-TYPE                  94
D26V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK  4(3P26.1) MUTATED
  DISTANT METASTASIS                                                                                                 5
  PRIMARY TUMOR                                                                                                      2
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           5
  REGIONAL LYMPH NODE                                                                                               18
                                                                                          clus
vv                                                                                         DEL PEAK  4(3P26.1) WILD-TYPE
  DISTANT METASTASIS                                                                                                  22
  PRIMARY TUMOR                                                                                                       24
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            32
  REGIONAL LYMPH NODE                                                                                                 94
D26V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P26.1) MUTATED     12   18
  DEL PEAK  4(3P26.1) WILD-TYPE   64  108
        clus
vv       DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE
  FEMALE                          12                            64
  MALE                            18                           108
D26V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P26.1) MUTATED      1   29
  DEL PEAK  4(3P26.1) WILD-TYPE    2  170
     clus
vv    DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE
  NO                            1                             2
  YES                          29                           170
                               vv
clus                             M0  M1 M1A M1B M1C
  DEL PEAK  4(3P26.1) MUTATED    25   0   0   0   1
  DEL PEAK  4(3P26.1) WILD-TYPE 151   2   2   2   2
D26V6, multiclass
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  4(3P26.1) MUTATED   14  1   2   3  0   1   4   1  0  1
  DEL PEAK  4(3P26.1) WILD-TYPE 96  1   6  14  1   4  10   5 19  4
D26V7, multiclass
D26V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  4(3P26.1) MUTATED             3       3        0        2        4
  DEL PEAK  4(3P26.1) WILD-TYPE           1      14       10       13       16
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  4(3P26.1) MUTATED           0         0         2         3
  DEL PEAK  4(3P26.1) WILD-TYPE         9        10        21         6
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  4(3P26.1) MUTATED            2          4          2        1
  DEL PEAK  4(3P26.1) WILD-TYPE          5         17         25        6
D26V9, multiclass

Clustering(27) Variable = Del Peak  5(3q23) mutation analysis
D27V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  5(3Q23) MUTATED    8  8
  DEL PEAK  5(3Q23) WILD-TYPE 51 47
  DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE 
                         16                          98 
  DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE 
                          8                          47 
$`DEL PEAK  5(3Q23) MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-EB-A24C 
       32.55        98.76        13.68        44.52        36.69         0.43 
TCGA-EE-A29H TCGA-EE-A29P TCGA-EE-A29X TCGA-ER-A19F TCGA-ER-A19J TCGA-FW-A3TU 
        4.41        12.03         8.09        11.11         4.18         0.13 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
       24.85        31.33        16.21        15.39 

$`DEL PEAK  5(3Q23) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J8 
       16.47        70.16        28.08        22.55        10.26         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       21.14        11.41        30.87         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        3.88        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I4 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        25.15         4.93        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24D TCGA-EB-A3HV 
        7.00        17.56        14.83         0.53         1.35         1.28 
TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A41B 
        1.18         0.30         0.13         0.53         0.26         0.10 
TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
        0.20         0.39        11.57         6.31         1.12         1.35 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       12.20         4.27        36.07         5.13         8.81         7.96 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       37.97        11.15        38.63         1.08        27.12         9.47 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A0 
        8.12         8.84         9.99         6.48         2.43        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19L 
       25.28        23.90         9.67         8.94         3.52        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A2OS 
       28.64        42.84        78.44         6.58         1.71        12.10 
TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 
       10.09         5.95        72.16        24.00         8.81        53.82 
TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 
        3.22        10.78         6.41         0.20         1.02        15.35 
TCGA-GN-A263 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C 
       15.35        84.72        10.09         5.59        12.16        24.00 
TCGA-GN-A26D TCGA-IH-A3EA 
       14.70        12.59 

  DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE 
                       0.13                        0.10 
  DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE 
                      98.76                       84.72 
  DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE 
                     14.535                      10.060 
[1] "0.1 - 98.8 (14.5)" "0.1 - 84.7 (10.1)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "DEL PEAK  5(3Q23) MUTATED"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "DEL PEAK  5(3Q23) MUTATED"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "DEL PEAK  5(3Q23) MUTATED"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "DEL PEAK  5(3Q23) MUTATED"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "DEL PEAK  5(3Q23) MUTATED"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "DEL PEAK  5(3Q23) MUTATED"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
"DEL PEAK  5(3Q23) WILD-TYPE"   "DEL PEAK  5(3Q23) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "DEL PEAK  5(3Q23) MUTATED" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"DEL PEAK  5(3Q23) WILD-TYPE" "DEL PEAK  5(3Q23) WILD-TYPE" 
[1] "hr=" "1.3"
D27V2, continuous
                             vv
clus                          DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK  5(3Q23) MUTATED                    2             1
  DEL PEAK  5(3Q23) WILD-TYPE                 25            25
                             vv
clus                          REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK  5(3Q23) MUTATED                                                                                          6
  DEL PEAK  5(3Q23) WILD-TYPE                                                                                       31
                             vv
clus                          REGIONAL LYMPH NODE
  DEL PEAK  5(3Q23) MUTATED                    16
  DEL PEAK  5(3Q23) WILD-TYPE                  96
D27V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK  5(3Q23) MUTATED
  DISTANT METASTASIS                                                                                               2
  PRIMARY TUMOR                                                                                                    1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                         6
  REGIONAL LYMPH NODE                                                                                             16
                                                                                          clus
vv                                                                                         DEL PEAK  5(3Q23) WILD-TYPE
  DISTANT METASTASIS                                                                                                25
  PRIMARY TUMOR                                                                                                     25
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          31
  REGIONAL LYMPH NODE                                                                                               96
D27V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(3Q23) MUTATED     11   14
  DEL PEAK  5(3Q23) WILD-TYPE   65  112
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  FEMALE                        11                          65
  MALE                          14                         112
D27V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(3Q23) MUTATED      1   24
  DEL PEAK  5(3Q23) WILD-TYPE    2  175
     clus
vv    DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  NO                          1                           2
  YES                        24                         175
                             vv
clus                           M0  M1 M1A M1B M1C
  DEL PEAK  5(3Q23) MUTATED    19   1   0   0   1
  DEL PEAK  5(3Q23) WILD-TYPE 157   1   2   2   2
D27V6, multiclass
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  5(3Q23) MUTATED   14  1   1   0  0   0   3   1  1  1
  DEL PEAK  5(3Q23) WILD-TYPE 96  1   7  17  1   5  11   5 18  4
D27V7, multiclass
D27V8, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  5(3Q23) MUTATED             1       3        2        2        0
  DEL PEAK  5(3Q23) WILD-TYPE           3      14        8       13       20
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  5(3Q23) MUTATED           1         2         2         2
  DEL PEAK  5(3Q23) WILD-TYPE         8         8        21         7
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  5(3Q23) MUTATED            1          1          1        2
  DEL PEAK  5(3Q23) WILD-TYPE          6         20         26        5
D27V9, multiclass

Clustering(28) Variable = Del Peak  6(4p16.3) mutation analysis
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(4P16.3) MUTATED   13 11
  DEL PEAK  6(4P16.3) WILD-TYPE 46 44
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                           24                            90 
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                           11                            44 
$`DEL PEAK  6(4P16.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A2J6 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-DA-A1HW 
       16.47        10.26        45.70         9.30         5.39        35.80 
TCGA-DA-A3F8 TCGA-EB-A3HV TCGA-EB-A3XC TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
       14.83         1.28         0.30        36.07         5.13        37.97 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A2A5 TCGA-ER-A19D 
       11.15         4.41         1.08        27.12         9.67         3.52 
TCGA-FR-A3R1 TCGA-FS-A1ZR TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A266 TCGA-GN-A268 
       10.09         8.81         0.13        24.85        10.09        15.39 

$`DEL PEAK  6(4P16.3) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 
       32.55        70.16        98.76        28.08        22.55         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE 
       21.14        11.41        30.87         6.35        15.25        13.32 
TCGA-D3-A3CF TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HY 
       24.00         4.01         2.86         3.88        48.79        51.12 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       10.03        39.19        13.68         9.99        44.52        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       25.15         4.93        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3XB TCGA-EB-A3XF 
       17.56         0.53         0.43         1.35         1.18         0.13 
TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X 
        0.53         0.26         0.10         0.20         0.39        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20H 
        6.31         1.12         1.35        12.20         4.27         8.81 
TCGA-EE-A29A TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        7.96        38.63         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        9.99         6.48         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
       23.90         8.94        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3YN 
       42.84        78.44         6.58         1.71        12.10         5.95 
TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC 
       72.16        24.00        53.82         3.22        10.78         6.41 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A265 
        0.20         1.02        15.35        15.35        31.33        84.72 
TCGA-GN-A267 TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
       16.21         5.59        12.16        24.00        14.70        12.59 

  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                         0.13                          0.10 
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                        45.70                         98.76 
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                        10.09                         11.21 
[1] "0.1 - 45.7 (10.1)" "0.1 - 98.8 (11.2)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "DEL PEAK  6(4P16.3) MUTATED"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK  6(4P16.3) MUTATED"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  6(4P16.3) MUTATED"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "DEL PEAK  6(4P16.3) MUTATED"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "DEL PEAK  6(4P16.3) MUTATED"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK  6(4P16.3) MUTATED"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  6(4P16.3) MUTATED"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "DEL PEAK  6(4P16.3) MUTATED"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "DEL PEAK  6(4P16.3) MUTATED"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK  6(4P16.3) MUTATED"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  6(4P16.3) MUTATED"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "DEL PEAK  6(4P16.3) MUTATED"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  6(4P16.3) WILD-TYPE"   "DEL PEAK  6(4P16.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK  6(4P16.3) MUTATED" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  6(4P16.3) WILD-TYPE" "DEL PEAK  6(4P16.3) WILD-TYPE" 
[1] "hr=" "1"  
D28V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK  6(4P16.3) MUTATED                    4             5
  DEL PEAK  6(4P16.3) WILD-TYPE                 23            21
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK  6(4P16.3) MUTATED                                                                                         14
  DEL PEAK  6(4P16.3) WILD-TYPE                                                                                       23
                               vv
clus                            REGIONAL LYMPH NODE
  DEL PEAK  6(4P16.3) MUTATED                    18
  DEL PEAK  6(4P16.3) WILD-TYPE                  94
D28V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK  6(4P16.3) MUTATED
  DISTANT METASTASIS                                                                                                 4
  PRIMARY TUMOR                                                                                                      5
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          14
  REGIONAL LYMPH NODE                                                                                               18
                                                                                          clus
vv                                                                                         DEL PEAK  6(4P16.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                  23
  PRIMARY TUMOR                                                                                                       21
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            23
  REGIONAL LYMPH NODE                                                                                                 94
D28V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4P16.3) MUTATED     19   22
  DEL PEAK  6(4P16.3) WILD-TYPE   57  104
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  FEMALE                          19                            57
  MALE                            22                           104
D28V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4P16.3) MUTATED      1   40
  DEL PEAK  6(4P16.3) WILD-TYPE    2  159
     clus
vv    DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  NO                            1                             2
  YES                          40                           159
                               vv
clus                             M0  M1 M1A M1B M1C
  DEL PEAK  6(4P16.3) MUTATED    34   0   0   1   0
  DEL PEAK  6(4P16.3) WILD-TYPE 142   2   2   1   3
D28V6, multiclass
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  6(4P16.3) MUTATED   24  0   0   3  0   2   2   2  3  0
  DEL PEAK  6(4P16.3) WILD-TYPE 86  2   8  14  1   3  12   4 16  5
D28V7, multiclass
D28V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  6(4P16.3) MUTATED             1       4        2        4        5
  DEL PEAK  6(4P16.3) WILD-TYPE           3      13        8       11       15
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  6(4P16.3) MUTATED           0         2         6         1
  DEL PEAK  6(4P16.3) WILD-TYPE         9         8        17         8
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  6(4P16.3) MUTATED            1          4          3        0
  DEL PEAK  6(4P16.3) WILD-TYPE          6         17         24        7
D28V9, multiclass

Clustering(29) Variable = Del Peak  7(4q34.3) mutation analysis
D29V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(4Q34.3) MUTATED   19 10
  DEL PEAK  7(4Q34.3) WILD-TYPE 40 45
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           29                            85 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           10                            45 
$`DEL PEAK  7(4Q34.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q8 TCGA-D3-A2JD TCGA-D3-A3CC TCGA-D3-A3MV TCGA-DA-A1HW 
       16.47        28.08        11.41        45.70         5.39        35.80 
TCGA-DA-A1HY TCGA-DA-A1I7 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A24C TCGA-EB-A3HV 
       51.12        36.69        17.56        14.83         0.43         1.28 
TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A41B TCGA-EE-A181 TCGA-EE-A20B TCGA-EE-A20H 
        1.18         0.30         0.10         1.12        36.07         8.81 
TCGA-EE-A29C TCGA-EE-A29M TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A5 TCGA-EE-A2A6 
       37.97        27.12         6.48         8.09         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A3ET TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A266 
        3.52         6.58         0.20         0.13        10.09 

$`DEL PEAK  7(4Q34.3) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J8 
       32.55        70.16        98.76        22.55        10.26         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF 
       21.14        30.87         6.35        15.25        13.32        24.00 
TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1I0 
        9.30         4.01         2.86         3.88        48.79        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA 
       39.19        13.68         9.99        44.52        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-EB-A1NK TCGA-EB-A24D 
       22.36         6.64        19.36         7.00         0.53         1.35 
TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X 
        0.13         0.53         0.26         0.20         0.39        11.57 
TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29A 
        6.31         1.35        12.20         4.27         5.13         7.96 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
       11.15        38.63         4.41         1.08         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.12         8.84         9.99         2.43        11.31        25.28 
TCGA-EE-A2A2 TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
       23.90        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A 
       78.44         1.71        12.10        10.09         5.95        72.16 
TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC 
       24.00         8.81        53.82         3.22        10.78         6.41 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A265 
        1.02        15.35        24.85        15.35        31.33        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C TCGA-GN-A26D 
       16.21        15.39         5.59        12.16        24.00        14.70 
TCGA-IH-A3EA 
       12.59 

  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                         0.10                          0.13 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                        51.12                         98.76 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                         8.94                         11.15 
[1] "0.1 - 51.1 (8.9)"  "0.1 - 98.8 (11.2)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
[1] "hr=" "1.4"
D29V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK  7(4Q34.3) MUTATED                    9             9
  DEL PEAK  7(4Q34.3) WILD-TYPE                 18            17
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK  7(4Q34.3) MUTATED                                                                                         12
  DEL PEAK  7(4Q34.3) WILD-TYPE                                                                                       25
                               vv
clus                            REGIONAL LYMPH NODE
  DEL PEAK  7(4Q34.3) MUTATED                    23
  DEL PEAK  7(4Q34.3) WILD-TYPE                  89
D29V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK  7(4Q34.3) MUTATED
  DISTANT METASTASIS                                                                                                 9
  PRIMARY TUMOR                                                                                                      9
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          12
  REGIONAL LYMPH NODE                                                                                               23
                                                                                          clus
vv                                                                                         DEL PEAK  7(4Q34.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                  18
  PRIMARY TUMOR                                                                                                       17
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            25
  REGIONAL LYMPH NODE                                                                                                 89
D29V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q34.3) MUTATED     28   25
  DEL PEAK  7(4Q34.3) WILD-TYPE   48  101
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  FEMALE                          28                            48
  MALE                            25                           101
D29V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q34.3) MUTATED      0   53
  DEL PEAK  7(4Q34.3) WILD-TYPE    3  146
     clus
vv    DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  NO                            0                             3
  YES                          53                           146
                               vv
clus                             M0  M1 M1A M1B M1C
  DEL PEAK  7(4Q34.3) MUTATED    47   1   0   2   0
  DEL PEAK  7(4Q34.3) WILD-TYPE 129   1   2   0   3
D29V6, multiclass
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  7(4Q34.3) MUTATED   30  0   1   3  0   3   3   2  5  3
  DEL PEAK  7(4Q34.3) WILD-TYPE 80  2   7  14  1   2  11   4 14  2
D29V7, multiclass
D29V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  7(4Q34.3) MUTATED             1       6        4        6        4
  DEL PEAK  7(4Q34.3) WILD-TYPE           3      11        6        9       16
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  7(4Q34.3) MUTATED           1         0         9         0
  DEL PEAK  7(4Q34.3) WILD-TYPE         8        10        14         9
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  7(4Q34.3) MUTATED            2          7          5        2
  DEL PEAK  7(4Q34.3) WILD-TYPE          5         14         22        5
D29V9, multiclass

Clustering(30) Variable = Del Peak  8(5q11.2) mutation analysis
D30V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(5Q11.2) MUTATED   18 17
  DEL PEAK  8(5Q11.2) WILD-TYPE 41 38
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                           35                            79 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                           17                            38 
$`DEL PEAK  8(5Q11.2) MUTATED`
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       28.08        22.55        11.41         6.35        15.25        45.70 
TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 
        5.39         4.01         3.88        48.79        35.80        10.03 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A3F5 TCGA-EB-A24C TCGA-EB-A3XC TCGA-EE-A17X 
       44.52        36.69        17.56         0.43         0.30        11.57 
TCGA-EE-A185 TCGA-EE-A20H TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29M 
        4.27         8.81        37.97        11.15        38.63        27.12 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29V TCGA-EE-A2A2 TCGA-FR-A44A TCGA-FS-A4F2 
       12.03         8.12         2.43        23.90        72.16         3.22 
TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       24.85        15.35        10.09        16.21        15.39 

$`DEL PEAK  8(5Q11.2) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A2J6 TCGA-D3-A2J8 
       16.47        32.55        70.16        98.76        10.26         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z3 
       21.14        30.87        13.32        24.00         9.30         2.86 
TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I8 TCGA-DA-A1IA 
       51.12        39.19        13.68         9.99        25.15         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EB-A1NK 
       22.36         6.64        19.36         7.00        14.83         0.53 
TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A41A 
        1.35         1.28         1.18         0.13         0.53         0.26 
TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
        0.10         0.20         0.39         6.31         1.12         1.35 
TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29H TCGA-EE-A29L 
       12.20        36.07         5.13         7.96         4.41         1.08 
TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 
        9.47         8.84         9.99         6.48         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       25.28         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL 
       12.99        28.64        42.84        78.44         6.58         1.71 
TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 
       12.10        10.09         5.95        24.00         8.81        53.82 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 
       10.78         6.41         0.20         1.02         0.13        15.35 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C TCGA-GN-A26D 
       31.33        84.72         5.59        12.16        24.00        14.70 
TCGA-IH-A3EA 
       12.59 

  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                          0.3                           0.1 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                        72.16                         98.76 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                        15.25                          9.67 
[1] "0.3 - 72.2 (15.2)" "0.1 - 98.8 (9.7)" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
[1] "hr=" "1.3"
D30V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK  8(5Q11.2) MUTATED                   11             5
  DEL PEAK  8(5Q11.2) WILD-TYPE                 16            21
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK  8(5Q11.2) MUTATED                                                                                         11
  DEL PEAK  8(5Q11.2) WILD-TYPE                                                                                       26
                               vv
clus                            REGIONAL LYMPH NODE
  DEL PEAK  8(5Q11.2) MUTATED                    33
  DEL PEAK  8(5Q11.2) WILD-TYPE                  79
D30V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK  8(5Q11.2) MUTATED
  DISTANT METASTASIS                                                                                                11
  PRIMARY TUMOR                                                                                                      5
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          11
  REGIONAL LYMPH NODE                                                                                               33
                                                                                          clus
vv                                                                                         DEL PEAK  8(5Q11.2) WILD-TYPE
  DISTANT METASTASIS                                                                                                  16
  PRIMARY TUMOR                                                                                                       21
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            26
  REGIONAL LYMPH NODE                                                                                                 79
D30V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q11.2) MUTATED     24   36
  DEL PEAK  8(5Q11.2) WILD-TYPE   52   90
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  FEMALE                          24                            52
  MALE                            36                            90
D30V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q11.2) MUTATED      0   60
  DEL PEAK  8(5Q11.2) WILD-TYPE    3  139
     clus
vv    DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  NO                            0                             3
  YES                          60                           139
                               vv
clus                             M0  M1 M1A M1B M1C
  DEL PEAK  8(5Q11.2) MUTATED    50   0   1   2   2
  DEL PEAK  8(5Q11.2) WILD-TYPE 126   2   1   0   1
D30V6, multiclass
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  8(5Q11.2) MUTATED   29  0   3   7  0   3   3   0  8  2
  DEL PEAK  8(5Q11.2) WILD-TYPE 81  2   5  10  1   2  11   6 11  3
D30V7, multiclass
D30V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  8(5Q11.2) MUTATED             2       5        3        3        5
  DEL PEAK  8(5Q11.2) WILD-TYPE           2      12        7       12       15
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  8(5Q11.2) MUTATED           0         5         6         1
  DEL PEAK  8(5Q11.2) WILD-TYPE         9         5        17         8
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  8(5Q11.2) MUTATED            2          9          9        3
  DEL PEAK  8(5Q11.2) WILD-TYPE          5         12         18        4
D30V9, multiclass

Clustering(31) Variable = Del Peak  9(5q31.3) mutation analysis
D31V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(5Q31.3) MUTATED   22 21
  DEL PEAK  9(5Q31.3) WILD-TYPE 37 34
  DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE 
                           43                            71 
  DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE 
                           21                            34 
$`DEL PEAK  9(5Q31.3) MUTATED`
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       28.08        22.55        11.41         6.35        15.25        45.70 
TCGA-D3-A3CF TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HW 
       24.00         5.39         4.01         3.88        48.79        35.80 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F5 
       51.12        10.03        44.52        36.69        25.15        17.56 
TCGA-EB-A24C TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A185 
        0.43         0.30         0.13        11.57         6.31         4.27 
TCGA-EE-A20H TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29P TCGA-EE-A29Q 
        8.81        37.97        38.63        27.12        12.03         8.12 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-FR-A44A 
        9.99         2.43         8.09        11.31        23.90        72.16 
TCGA-FS-A4F0 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       53.82        24.85        15.35        10.09        16.21        15.39 
TCGA-GN-A269 
        5.59 

$`DEL PEAK  9(5Q31.3) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A2J6 TCGA-D3-A2J8 
       16.47        32.55        70.16        98.76        10.26         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D9-A3Z3 TCGA-DA-A1I1 
       21.14        30.87        13.32         9.30         2.86        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       13.68         9.99         4.93        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XB 
        7.00        14.83         0.53         1.35         1.28         1.18 
TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A181 
        0.53         0.26         0.10         0.20         0.39         1.12 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29D 
        1.35        12.20        36.07         5.13         7.96        11.15 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2A1 
        4.41         1.08         9.47         8.84         6.48        25.28 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A2OS 
       28.64        42.84        78.44         6.58         1.71        12.10 
TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F2 TCGA-FS-A4F9 
       10.09         5.95        24.00         8.81         3.22        10.78 
TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A264 
        6.41         0.20         1.02         0.13        15.35        31.33 
TCGA-GN-A265 TCGA-GN-A26A TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
       84.72        12.16        24.00        14.70        12.59 

  DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE 
                         0.13                          0.10 
  DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE 
                        72.16                         98.76 
  DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE 
                        15.25                          9.47 
[1] "0.1 - 72.2 (15.2)" "0.1 - 98.8 (9.5)" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK  9(5Q31.3) WILD-TYPE"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
  "DEL PEAK  9(5Q31.3) MUTATED" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-GN-A264                    TCGA-GN-A265 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK  9(5Q31.3) MUTATED"   "DEL PEAK  9(5Q31.3) MUTATED" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK  9(5Q31.3) WILD-TYPE" "DEL PEAK  9(5Q31.3) WILD-TYPE" 
[1] "hr=" "1.4"
D31V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK  9(5Q31.3) MUTATED                   11             7
  DEL PEAK  9(5Q31.3) WILD-TYPE                 16            19
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK  9(5Q31.3) MUTATED                                                                                         15
  DEL PEAK  9(5Q31.3) WILD-TYPE                                                                                       22
                               vv
clus                            REGIONAL LYMPH NODE
  DEL PEAK  9(5Q31.3) MUTATED                    45
  DEL PEAK  9(5Q31.3) WILD-TYPE                  67
D31V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK  9(5Q31.3) MUTATED
  DISTANT METASTASIS                                                                                                11
  PRIMARY TUMOR                                                                                                      7
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          15
  REGIONAL LYMPH NODE                                                                                               45
                                                                                          clus
vv                                                                                         DEL PEAK  9(5Q31.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                  16
  PRIMARY TUMOR                                                                                                       19
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            22
  REGIONAL LYMPH NODE                                                                                                 67
D31V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(5Q31.3) MUTATED     30   48
  DEL PEAK  9(5Q31.3) WILD-TYPE   46   78
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  FEMALE                          30                            46
  MALE                            48                            78
D31V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(5Q31.3) MUTATED      1   77
  DEL PEAK  9(5Q31.3) WILD-TYPE    2  122
     clus
vv    DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  NO                            1                             2
  YES                          77                           122
                               vv
clus                             M0  M1 M1A M1B M1C
  DEL PEAK  9(5Q31.3) MUTATED    67   0   1   2   2
  DEL PEAK  9(5Q31.3) WILD-TYPE 109   2   1   0   1
D31V6, multiclass
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  9(5Q31.3) MUTATED   41  0   3   6  0   4   4   1 12  2
  DEL PEAK  9(5Q31.3) WILD-TYPE 69  2   5  11  1   1  10   5  7  3
D31V7, multiclass
D31V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  9(5Q31.3) MUTATED             3       8        4        4        6
  DEL PEAK  9(5Q31.3) WILD-TYPE           1       9        6       11       14
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  9(5Q31.3) MUTATED           3         6         7         2
  DEL PEAK  9(5Q31.3) WILD-TYPE         6         4        16         7
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  9(5Q31.3) MUTATED            3          9         12        3
  DEL PEAK  9(5Q31.3) WILD-TYPE          4         12         15        4
D31V9, multiclass

Clustering(32) Variable = Del Peak 10(6q16.3) mutation analysis
D32V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(6Q16.3) MUTATED   31 33
  DEL PEAK 10(6Q16.3) WILD-TYPE 28 22
  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                           64                            50 
  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                           33                            22 
$`DEL PEAK 10(6Q16.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JD 
       16.47        32.55        70.16        22.55        10.26        11.41 
TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HV 
       30.87        15.25        13.32         2.86         3.88        48.79 
TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       51.12        39.19         9.99        36.69        25.15         4.93 
TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EB-A24D TCGA-EB-A3XB TCGA-EB-A3XC 
        6.64         7.00        17.56         1.35         1.18         0.30 
TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
        0.13         0.53         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H 
       36.07         8.81         7.96        37.97        11.15         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
        1.08        27.12         8.12         8.84         9.99         6.48 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        2.43         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19N TCGA-ER-A3ET TCGA-ER-A3PL 
        8.94        11.11         4.18        42.84         6.58         1.71 
TCGA-FS-A1ZR TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A264 
        8.81         3.22         0.20         1.02         0.13        31.33 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-IH-A3EA 
       16.21        15.39        12.16        12.59 

$`DEL PEAK 10(6Q16.3) WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JK TCGA-D3-A3CC 
       98.76        28.08         8.38        21.14         6.35        45.70 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-DA-A1HW TCGA-DA-A1I0 
       24.00         9.30         5.39         4.01        35.80        10.03 
TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EB-A1NK 
       13.68        44.52        22.36        19.36        14.83         0.53 
TCGA-EB-A24C TCGA-EB-A3HV TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z 
        0.43         1.28         0.26         0.10         0.20         0.39 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A20F TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29P 
       11.57         6.31         5.13        38.63         9.47        12.03 
TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-FR-A2OS TCGA-FR-A3R1 
        3.52        12.99        28.64        78.44        12.10        10.09 
TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC 
        5.95        72.16        24.00        53.82        10.78         6.41 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A269 
       15.35        24.85        15.35        84.72        10.09         5.59 
TCGA-GN-A26C TCGA-GN-A26D 
       24.00        14.70 

  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                         0.13                          0.10 
  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                        70.16                         98.76 
  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                        9.830                        12.065 
[1] "0.1 - 70.2 (9.8)"  "0.1 - 98.8 (12.1)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A183                    TCGA-EE-A185 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A183                    TCGA-EE-A185 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A183                    TCGA-EE-A185 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
[1] "hr=" "1.4"
D32V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 10(6Q16.3) MUTATED                   20             9
  DEL PEAK 10(6Q16.3) WILD-TYPE                  7            17
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 10(6Q16.3) MUTATED                                                                                         23
  DEL PEAK 10(6Q16.3) WILD-TYPE                                                                                       14
                               vv
clus                            REGIONAL LYMPH NODE
  DEL PEAK 10(6Q16.3) MUTATED                    60
  DEL PEAK 10(6Q16.3) WILD-TYPE                  52
D32V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 10(6Q16.3) MUTATED
  DISTANT METASTASIS                                                                                                20
  PRIMARY TUMOR                                                                                                      9
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          23
  REGIONAL LYMPH NODE                                                                                               60
                                                                                          clus
vv                                                                                         DEL PEAK 10(6Q16.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                   7
  PRIMARY TUMOR                                                                                                       17
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            14
  REGIONAL LYMPH NODE                                                                                                 52
D32V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(6Q16.3) MUTATED     43   69
  DEL PEAK 10(6Q16.3) WILD-TYPE   33   57
        clus
vv       DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  FEMALE                          43                            33
  MALE                            69                            57
D32V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(6Q16.3) MUTATED      0  112
  DEL PEAK 10(6Q16.3) WILD-TYPE    3   87
     clus
vv    DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  NO                            0                             3
  YES                         112                            87
                               vv
clus                            M0 M1 M1A M1B M1C
  DEL PEAK 10(6Q16.3) MUTATED   99  2   1   1   1
  DEL PEAK 10(6Q16.3) WILD-TYPE 77  0   1   1   2
D32V6, multiclass
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 10(6Q16.3) MUTATED   58  0   7  13  1   2   6   4 10  3
  DEL PEAK 10(6Q16.3) WILD-TYPE 52  2   1   4  0   3   8   2  9  2
D32V7, multiclass
D32V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 10(6Q16.3) MUTATED             3       9        6        8       11
  DEL PEAK 10(6Q16.3) WILD-TYPE           1       8        4        7        9
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 10(6Q16.3) MUTATED           4         5        10         5
  DEL PEAK 10(6Q16.3) WILD-TYPE         5         5        13         4
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 10(6Q16.3) MUTATED            5         14         14        4
  DEL PEAK 10(6Q16.3) WILD-TYPE          2          7         13        3
D32V9, multiclass

Clustering(33) Variable = Del Peak 11(6q26) mutation analysis
D33V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 11(6Q26) MUTATED   31 34
  DEL PEAK 11(6Q26) WILD-TYPE 28 21
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         65                          49 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         34                          21 
$`DEL PEAK 11(6Q26) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A2JF 
       16.47        32.55        22.55        10.26        11.41        30.87 
TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HV 
       15.25        13.32        24.00         2.86         3.88        48.79 
TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       51.12        39.19         9.99        36.69        25.15         4.93 
TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EB-A24D TCGA-EB-A3XB TCGA-EB-A3XC 
        6.64         7.00        17.56         1.35         1.18         0.30 
TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A42Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
        0.13         0.53         0.39         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
        4.27        36.07         8.81         7.96        37.97        11.15 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        4.41         1.08        27.12         8.12         8.84         9.99 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        6.48         2.43         8.09        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19N TCGA-ER-A3PL 
        8.94         3.52        11.11         4.18        42.84         1.71 
TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
       24.00         8.81         3.22         0.20         1.02         0.13 
TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-IH-A3EA 
       31.33        16.21        15.39        12.16        12.59 

$`DEL PEAK 11(6Q26) WILD-TYPE`
TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JK 
       70.16        98.76        28.08         8.38        21.14         6.35 
TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-DA-A1HW TCGA-DA-A1I0 
       45.70         9.30         5.39         4.01        35.80        10.03 
TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EB-A1NK 
       13.68        44.52        22.36        19.36        14.83         0.53 
TCGA-EB-A24C TCGA-EB-A3HV TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EE-A17X 
        0.43         1.28         0.26         0.10         0.20        11.57 
TCGA-EE-A17Z TCGA-EE-A20F TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A2A0 
        6.31         5.13        38.63         9.47        12.03        11.31 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A2OS TCGA-FR-A3R1 
       12.99        28.64        78.44         6.58        12.10        10.09 
TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-GN-A261 
        5.95        72.16        53.82        10.78         6.41        15.35 
TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A269 TCGA-GN-A26C 
       24.85        15.35        84.72        10.09         5.59        24.00 
TCGA-GN-A26D 
       14.70 

  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                       0.13                        0.10 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                      51.12                       98.76 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                       9.67                       12.03 
[1] "0.1 - 51.1 (9.7)"  "0.1 - 98.8 (12.0)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
[1] "hr=" "1.6"
D33V2, continuous
                             vv
clus                          DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 11(6Q26) MUTATED                   20            13
  DEL PEAK 11(6Q26) WILD-TYPE                  7            13
                             vv
clus                          REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 11(6Q26) MUTATED                                                                                         21
  DEL PEAK 11(6Q26) WILD-TYPE                                                                                       16
                             vv
clus                          REGIONAL LYMPH NODE
  DEL PEAK 11(6Q26) MUTATED                    63
  DEL PEAK 11(6Q26) WILD-TYPE                  49
D33V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 11(6Q26) MUTATED
  DISTANT METASTASIS                                                                                              20
  PRIMARY TUMOR                                                                                                   13
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                        21
  REGIONAL LYMPH NODE                                                                                             63
                                                                                          clus
vv                                                                                         DEL PEAK 11(6Q26) WILD-TYPE
  DISTANT METASTASIS                                                                                                 7
  PRIMARY TUMOR                                                                                                     13
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          16
  REGIONAL LYMPH NODE                                                                                               49
D33V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q26) MUTATED     46   71
  DEL PEAK 11(6Q26) WILD-TYPE   30   55
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  FEMALE                        46                          30
  MALE                          71                          55
D33V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q26) MUTATED      0  117
  DEL PEAK 11(6Q26) WILD-TYPE    3   82
     clus
vv    DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  NO                          0                           3
  YES                       117                          82
                             vv
clus                           M0  M1 M1A M1B M1C
  DEL PEAK 11(6Q26) MUTATED   103   2   1   1   1
  DEL PEAK 11(6Q26) WILD-TYPE  73   0   1   1   2
D33V6, multiclass
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 11(6Q26) MUTATED   59  0   7  13  1   2   6   5 11  4
  DEL PEAK 11(6Q26) WILD-TYPE 51  2   1   4  0   3   8   1  8  1
D33V7, multiclass
D33V8, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 11(6Q26) MUTATED             3       9        6       10       11
  DEL PEAK 11(6Q26) WILD-TYPE           1       8        4        5        9
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 11(6Q26) MUTATED           4         6         9         4
  DEL PEAK 11(6Q26) WILD-TYPE         5         4        14         5
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 11(6Q26) MUTATED            5         15         16        4
  DEL PEAK 11(6Q26) WILD-TYPE          2          6         11        3
D33V9, multiclass

Clustering(34) Variable = Del Peak 12(6q27) mutation analysis
D34V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 12(6Q27) MUTATED   30 35
  DEL PEAK 12(6Q27) WILD-TYPE 29 20
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                         65                          49 
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                         35                          20 
$`DEL PEAK 12(6Q27) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A2JF 
       16.47        32.55        22.55        10.26        11.41        30.87 
TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HV 
       15.25        13.32        24.00         2.86         3.88        48.79 
TCGA-DA-A1HY TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IC 
       51.12         9.99        36.69        25.15         4.93         6.64 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EB-A24D TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF 
        7.00        17.56         1.35         1.18         0.30         0.13 
TCGA-EB-A3Y6 TCGA-EB-A42Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
        0.53         0.39         1.12         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H 
       36.07         8.81         7.96        37.97        11.15         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
        1.08        27.12         8.12         8.84         9.99         6.48 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        2.43         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19N TCGA-ER-A3PL 
        8.94         3.52        11.11         4.18        42.84         1.71 
TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F2 TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
       24.00         8.81         3.22         0.20         1.02         0.13 
TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-IH-A3EA 
       31.33        16.21        15.39        12.16        12.59 

$`DEL PEAK 12(6Q27) WILD-TYPE`
TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JK 
       70.16        98.76        28.08         8.38        21.14         6.35 
TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-DA-A1HW TCGA-DA-A1I0 
       45.70         9.30         5.39         4.01        35.80        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F8 
       39.19        13.68        44.52        22.36        19.36        14.83 
TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A3HV TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y 
        0.53         0.43         1.28         0.26         0.10         0.20 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A20F TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29P 
       11.57         6.31         5.13        38.63         9.47        12.03 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A2OS TCGA-FR-A3R1 
       12.99        28.64        78.44         6.58        12.10        10.09 
TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-GN-A261 
        5.95        72.16        53.82        10.78         6.41        15.35 
TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A269 TCGA-GN-A26C 
       24.85        15.35        84.72        10.09         5.59        24.00 
TCGA-GN-A26D 
       14.70 

  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                       0.13                        0.10 
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                      51.12                       98.76 
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                       9.67                       12.10 
[1] "0.1 - 51.1 (9.7)"  "0.1 - 98.8 (12.1)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
  "DEL PEAK 12(6Q27) MUTATED"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"DEL PEAK 12(6Q27) WILD-TYPE" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "DEL PEAK 12(6Q27) MUTATED" "DEL PEAK 12(6Q27) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
"DEL PEAK 12(6Q27) WILD-TYPE"   "DEL PEAK 12(6Q27) MUTATED" 
[1] "hr=" "1.8"
D34V2, continuous
                             vv
clus                          DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 12(6Q27) MUTATED                   19            13
  DEL PEAK 12(6Q27) WILD-TYPE                  8            13
                             vv
clus                          REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 12(6Q27) MUTATED                                                                                         20
  DEL PEAK 12(6Q27) WILD-TYPE                                                                                       17
                             vv
clus                          REGIONAL LYMPH NODE
  DEL PEAK 12(6Q27) MUTATED                    64
  DEL PEAK 12(6Q27) WILD-TYPE                  48
D34V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 12(6Q27) MUTATED
  DISTANT METASTASIS                                                                                              19
  PRIMARY TUMOR                                                                                                   13
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                        20
  REGIONAL LYMPH NODE                                                                                             64
                                                                                          clus
vv                                                                                         DEL PEAK 12(6Q27) WILD-TYPE
  DISTANT METASTASIS                                                                                                 8
  PRIMARY TUMOR                                                                                                     13
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          17
  REGIONAL LYMPH NODE                                                                                               48
D34V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 12(6Q27) MUTATED     46   70
  DEL PEAK 12(6Q27) WILD-TYPE   30   56
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  FEMALE                        46                          30
  MALE                          70                          56
D34V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 12(6Q27) MUTATED      0  116
  DEL PEAK 12(6Q27) WILD-TYPE    3   83
     clus
vv    DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  NO                          0                           3
  YES                       116                          83
                             vv
clus                           M0  M1 M1A M1B M1C
  DEL PEAK 12(6Q27) MUTATED   102   2   1   1   1
  DEL PEAK 12(6Q27) WILD-TYPE  74   0   1   1   2
D34V6, multiclass
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 12(6Q27) MUTATED   59  0   7  13  1   2   6   5 10  4
  DEL PEAK 12(6Q27) WILD-TYPE 51  2   1   4  0   3   8   1  9  1
D34V7, multiclass
D34V8, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 12(6Q27) MUTATED             3       9        6       10       11
  DEL PEAK 12(6Q27) WILD-TYPE           1       8        4        5        9
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 12(6Q27) MUTATED           5         6         8         4
  DEL PEAK 12(6Q27) WILD-TYPE         4         4        15         5
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 12(6Q27) MUTATED            5         15         15        4
  DEL PEAK 12(6Q27) WILD-TYPE          2          6         12        3
D34V9, multiclass

Clustering(35) Variable = Del Peak 13(8p23.3) mutation analysis
D35V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 13(8P23.3) MUTATED   16 14
  DEL PEAK 13(8P23.3) WILD-TYPE 43 41
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                           30                            84 
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                           14                            41 
$`DEL PEAK 13(8P23.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3C6 TCGA-D3-A3MO 
       16.47        22.55        10.26        11.41        15.25         9.30 
TCGA-D9-A3Z4 TCGA-DA-A1IA TCGA-DA-A3F3 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A3XC 
        3.88         4.93         7.00         0.53         0.43         0.30 
TCGA-EB-A3Y6 TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A183 TCGA-EE-A29C 
        0.53         0.10         0.20         0.39        12.20        37.97 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29V TCGA-EE-A2A2 TCGA-EE-A2A5 
        4.41         1.08        27.12         2.43        23.90         9.67 
TCGA-ER-A19J TCGA-ER-A3PL TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A265 TCGA-IH-A3EA 
        4.18         1.71         1.02        31.33        84.72        12.59 

$`DEL PEAK 13(8P23.3) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 
       32.55        70.16        98.76        28.08         8.38        21.14 
TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MV 
       30.87         6.35        45.70        13.32        24.00         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        4.01         2.86        48.79        35.80        51.12        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A24D 
       22.36         6.64        19.36        17.56        14.83         1.35 
TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XF TCGA-EB-A41A TCGA-EE-A17X TCGA-EE-A17Z 
        1.28         1.18         0.13         0.26        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        1.12         1.35         4.27        36.07         5.13         8.81 
TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        7.96        11.15        38.63         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         6.48         8.09        11.31        25.28 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        8.94         3.52        11.11        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A 
       78.44         6.58        12.10        10.09         5.95        72.16 
TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC 
       24.00         8.81        53.82         3.22        10.78         6.41 
TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A266 
        0.20         0.13        15.35        24.85        15.35        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C TCGA-GN-A26D 
       16.21        15.39         5.59        12.16        24.00        14.70 

  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                         0.10                          0.13 
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                        84.72                         98.76 
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                        5.965                        11.440 
[1] "0.1 - 84.7 (6.0)"  "0.1 - 98.8 (11.4)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A183                    TCGA-EE-A185 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-GN-A266                    TCGA-GN-A267 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
[1] "hr=" "1.5"
D35V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 13(8P23.3) MUTATED                    7            10
  DEL PEAK 13(8P23.3) WILD-TYPE                 20            16
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 13(8P23.3) MUTATED                                                                                          5
  DEL PEAK 13(8P23.3) WILD-TYPE                                                                                       32
                               vv
clus                            REGIONAL LYMPH NODE
  DEL PEAK 13(8P23.3) MUTATED                    29
  DEL PEAK 13(8P23.3) WILD-TYPE                  83
D35V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 13(8P23.3) MUTATED
  DISTANT METASTASIS                                                                                                 7
  PRIMARY TUMOR                                                                                                     10
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           5
  REGIONAL LYMPH NODE                                                                                               29
                                                                                          clus
vv                                                                                         DEL PEAK 13(8P23.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                  20
  PRIMARY TUMOR                                                                                                       16
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            32
  REGIONAL LYMPH NODE                                                                                                 83
D35V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(8P23.3) MUTATED     15   36
  DEL PEAK 13(8P23.3) WILD-TYPE   61   90
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  FEMALE                          15                            61
  MALE                            36                            90
D35V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(8P23.3) MUTATED      0   51
  DEL PEAK 13(8P23.3) WILD-TYPE    3  148
     clus
vv    DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  NO                            0                             3
  YES                          51                           148
                               vv
clus                             M0  M1 M1A M1B M1C
  DEL PEAK 13(8P23.3) MUTATED    43   1   1   1   0
  DEL PEAK 13(8P23.3) WILD-TYPE 133   1   1   1   3
D35V6, multiclass
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 13(8P23.3) MUTATED   28  0   0   6  1   2   1   2  5  1
  DEL PEAK 13(8P23.3) WILD-TYPE 82  2   8  11  0   3  13   4 14  4
D35V7, multiclass
D35V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 13(8P23.3) MUTATED             1       6        4        5        2
  DEL PEAK 13(8P23.3) WILD-TYPE           3      11        6       10       18
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 13(8P23.3) MUTATED           1         2         7         3
  DEL PEAK 13(8P23.3) WILD-TYPE         8         8        16         6
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 13(8P23.3) MUTATED            0          5          6        2
  DEL PEAK 13(8P23.3) WILD-TYPE          7         16         21        5
D35V9, multiclass

Clustering(36) Variable = Del Peak 14(9p23) mutation analysis
D36V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 14(9P23) MUTATED   39 40
  DEL PEAK 14(9P23) WILD-TYPE 20 15
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                         79                          35 
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                         40                          15 
$`DEL PEAK 14(9P23) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2JF 
       16.47        32.55        70.16        28.08        10.26        30.87 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
        6.35        15.25        45.70        24.00         9.30         5.39 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
        4.01         2.86         3.88        48.79        35.80        51.12 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA 
       39.19        13.68         9.99        44.52        25.15         4.93 
TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XB 
        6.64         7.00         0.43         1.35         1.28         1.18 
TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Z 
        0.30         0.13         0.53         0.26         0.10         0.39 
TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       11.57         1.12         1.35         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29N 
        8.81        37.97        11.15        38.63         1.08         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       12.03         8.12         9.99         6.48         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L 
       11.31         9.67         8.94         3.52        11.11        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3YN TCGA-FR-A44A 
       28.64        42.84         1.71        12.10         5.95        72.16 
TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 
        8.81        53.82         3.22        10.78         6.41         1.02 
TCGA-FW-A3TU TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A26A 
        0.13        15.35        31.33        10.09        15.39        12.16 
TCGA-GN-A26D 
       14.70 

$`DEL PEAK 14(9P23) WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A3CE 
       98.76        22.55         8.38        21.14        11.41        13.32 
TCGA-DA-A1I0 TCGA-DA-A1I7 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 
       10.03        36.69        22.36        19.36        17.56        14.83 
TCGA-EB-A1NK TCGA-EB-A42Y TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A29A TCGA-EE-A29H 
        0.53         0.20         6.31        12.20         7.96         4.41 
TCGA-EE-A29M TCGA-EE-A29R TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-ER-A19J TCGA-ER-A1A1 
       27.12         8.84        25.28        23.90         4.18        78.44 
TCGA-ER-A3ET TCGA-FR-A3R1 TCGA-FS-A1ZN TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
        6.58        10.09        24.00         0.20        15.35        24.85 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A269 TCGA-GN-A26C TCGA-IH-A3EA 
       84.72        16.21         5.59        24.00        12.59 

  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                        0.1                         0.2 
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                      72.16                       98.76 
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                       9.67                       14.83 
[1] "0.1 - 72.2 (9.7)"  "0.2 - 98.8 (14.8)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"DEL PEAK 14(9P23) WILD-TYPE" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"DEL PEAK 14(9P23) WILD-TYPE" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"DEL PEAK 14(9P23) WILD-TYPE" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"DEL PEAK 14(9P23) WILD-TYPE" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D3-A1Q6                  TCGA-D3-A1Q7 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-D3-A1Q8                  TCGA-D3-A1Q9 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-D3-A2J6                  TCGA-D3-A2J8 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-D3-A2J9                  TCGA-D3-A2JD 
"DEL PEAK 14(9P23) WILD-TYPE" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-D3-A2JF                  TCGA-D3-A2JK 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CC 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D3-A3CE                  TCGA-D3-A3CF 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D3-A3MO                  TCGA-D3-A3MV 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-D9-A3Z4                  TCGA-DA-A1HV 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1HW                  TCGA-DA-A1HY 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1I0                  TCGA-DA-A1I1 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1I2                  TCGA-DA-A1I4 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1I5                  TCGA-DA-A1I7 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-DA-A1I8                  TCGA-DA-A1IA 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A1IC 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A3F2                  TCGA-DA-A3F3 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"DEL PEAK 14(9P23) WILD-TYPE" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EB-A1NK                  TCGA-EB-A24C 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A24D                  TCGA-EB-A3HV 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A3XB                  TCGA-EB-A3XC 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A3XF                  TCGA-EB-A3Y6 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A41A                  TCGA-EB-A41B 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EB-A42Y                  TCGA-EB-A42Z 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A182 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A183                  TCGA-EE-A185 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A20B                  TCGA-EE-A20F 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A20H                  TCGA-EE-A29A 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29M 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A29N                  TCGA-EE-A29P 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A29Q                  TCGA-EE-A29R 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A29V                  TCGA-EE-A29X 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A2A0                  TCGA-EE-A2A1 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-EE-A2A2                  TCGA-EE-A2A5 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-ER-A19D 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-ER-A19F                  TCGA-ER-A19J 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-ER-A19L                  TCGA-ER-A19M 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-ER-A19N                  TCGA-ER-A1A1 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-ER-A3ET                  TCGA-ER-A3PL 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FR-A2OS                  TCGA-FR-A3R1 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-FR-A3YN                  TCGA-FR-A44A 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FS-A1ZN                  TCGA-FS-A1ZR 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FS-A4F0                  TCGA-FS-A4F2 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FS-A4F9                  TCGA-FS-A4FC 
  "DEL PEAK 14(9P23) MUTATED"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FW-A3I3                  TCGA-FW-A3R5 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-FW-A3TU                  TCGA-GN-A261 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A262                  TCGA-GN-A263 
"DEL PEAK 14(9P23) WILD-TYPE"   "DEL PEAK 14(9P23) MUTATED" 
                 TCGA-GN-A264                  TCGA-GN-A265 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A266                  TCGA-GN-A267 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A269 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A26A                  TCGA-GN-A26C 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
                 TCGA-GN-A26D                  TCGA-IH-A3EA 
  "DEL PEAK 14(9P23) MUTATED" "DEL PEAK 14(9P23) WILD-TYPE" 
[1] "hr=" "1.5"
D36V2, continuous
                             vv
clus                          DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 14(9P23) MUTATED                   20            17
  DEL PEAK 14(9P23) WILD-TYPE                  7             9
                             vv
clus                          REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 14(9P23) MUTATED                                                                                         29
  DEL PEAK 14(9P23) WILD-TYPE                                                                                        8
                             vv
clus                          REGIONAL LYMPH NODE
  DEL PEAK 14(9P23) MUTATED                    75
  DEL PEAK 14(9P23) WILD-TYPE                  37
D36V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 14(9P23) MUTATED
  DISTANT METASTASIS                                                                                              20
  PRIMARY TUMOR                                                                                                   17
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                        29
  REGIONAL LYMPH NODE                                                                                             75
                                                                                          clus
vv                                                                                         DEL PEAK 14(9P23) WILD-TYPE
  DISTANT METASTASIS                                                                                                 7
  PRIMARY TUMOR                                                                                                      9
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           8
  REGIONAL LYMPH NODE                                                                                               37
D36V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(9P23) MUTATED     57   84
  DEL PEAK 14(9P23) WILD-TYPE   19   42
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  FEMALE                        57                          19
  MALE                          84                          42
D36V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(9P23) MUTATED      0  141
  DEL PEAK 14(9P23) WILD-TYPE    3   58
     clus
vv    DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  NO                          0                           3
  YES                       141                          58
                             vv
clus                           M0  M1 M1A M1B M1C
  DEL PEAK 14(9P23) MUTATED   123   0   1   1   3
  DEL PEAK 14(9P23) WILD-TYPE  53   2   1   1   0
D36V6, multiclass
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 14(9P23) MUTATED   79  1   4  13  1   2   7   5 12  5
  DEL PEAK 14(9P23) WILD-TYPE 31  1   4   4  0   3   7   1  7  0
D36V7, multiclass
D36V8, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 14(9P23) MUTATED             4       9        6       10       16
  DEL PEAK 14(9P23) WILD-TYPE           0       8        4        5        4
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 14(9P23) MUTATED           8         8        17         7
  DEL PEAK 14(9P23) WILD-TYPE         1         2         6         2
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 14(9P23) MUTATED            2         15         17        5
  DEL PEAK 14(9P23) WILD-TYPE          5          6         10        2
D36V9, multiclass

Clustering(37) Variable = Del Peak 15(9p21.3) mutation analysis
D37V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 15(9P21.3) MUTATED   46 44
  DEL PEAK 15(9P21.3) WILD-TYPE 13 11
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                           90                            24 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                           44                            11 
$`DEL PEAK 15(9P21.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2JF 
       16.47        32.55        70.16        28.08        10.26        30.87 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO 
        6.35        15.25        45.70        13.32        24.00         9.30 
TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HW 
        5.39         4.01         2.86         3.88        48.79        35.80 
TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       51.12        39.19        13.68         9.99        44.52        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EB-A24C 
       25.15         4.93         6.64         7.00        17.56         0.43 
TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A3Y6 
        1.35         1.28         1.18         0.30         0.13         0.53 
TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A181 
        0.26         0.10         0.20         0.39        11.57         1.12 
TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
        1.35         4.27        36.07         5.13         8.81         7.96 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
       37.97        11.15        38.63         4.41         1.08         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       12.03         8.12         8.84         9.99         6.48         2.43 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
        8.09        11.31         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A3PL TCGA-FR-A2OS 
        4.18        12.99        28.64        42.84         1.71        12.10 
TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F2 
        5.95        72.16        24.00         8.81        53.82         3.22 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A263 
       10.78         6.41         0.20         1.02         0.13        15.35 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        10.09        15.39        12.16        14.70 

$`DEL PEAK 15(9P21.3) WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-DA-A1I0 
       98.76        22.55         8.38        21.14        11.41        10.03 
TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EE-A17Z TCGA-EE-A183 
       22.36        19.36        14.83         0.53         6.31        12.20 
TCGA-EE-A29M TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A3R1 
       27.12        25.28        23.90        78.44         6.58        10.09 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A267 TCGA-GN-A269 TCGA-GN-A26C TCGA-IH-A3EA 
       15.35        24.85        16.21         5.59        24.00        12.59 

  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                         0.10                          0.53 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                        84.72                         98.76 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                         9.57                         15.78 
[1] "0.1 - 84.7 (9.6)"  "0.5 - 98.8 (15.8)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D3-A1Q6                    TCGA-D3-A1Q7 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-D3-A1Q8                    TCGA-D3-A1Q9 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-D3-A2J6                    TCGA-D3-A2J8 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-D3-A2J9                    TCGA-D3-A2JD 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-D3-A2JF                    TCGA-D3-A2JK 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CC 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D3-A3CE                    TCGA-D3-A3CF 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D3-A3MO                    TCGA-D3-A3MV 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-D9-A3Z4                    TCGA-DA-A1HV 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1HW                    TCGA-DA-A1HY 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1I0                    TCGA-DA-A1I1 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1I2                    TCGA-DA-A1I4 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1I5                    TCGA-DA-A1I7 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1I8                    TCGA-DA-A1IA 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A1IC 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A3F2                    TCGA-DA-A3F3 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-EB-A1NK                    TCGA-EB-A24C 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A24D                    TCGA-EB-A3HV 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A3XB                    TCGA-EB-A3XC 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A3XF                    TCGA-EB-A3Y6 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A41A                    TCGA-EB-A41B 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EB-A42Y                    TCGA-EB-A42Z 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A182 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A183                    TCGA-EE-A185 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A20B                    TCGA-EE-A20F 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A20H                    TCGA-EE-A29A 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29M 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-EE-A29N                    TCGA-EE-A29P 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29Q                    TCGA-EE-A29R 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A29V                    TCGA-EE-A29X 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A2A0                    TCGA-EE-A2A1 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-EE-A2A2                    TCGA-EE-A2A5 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-ER-A19D 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-ER-A19F                    TCGA-ER-A19J 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-ER-A19L                    TCGA-ER-A19M 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-ER-A19N                    TCGA-ER-A1A1 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-ER-A3ET                    TCGA-ER-A3PL 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FR-A2OS                    TCGA-FR-A3R1 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-FR-A3YN                    TCGA-FR-A44A 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FS-A1ZN                    TCGA-FS-A1ZR 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FS-A4F0                    TCGA-FS-A4F2 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FS-A4F9                    TCGA-FS-A4FC 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FW-A3I3                    TCGA-FW-A3R5 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FW-A3TU                    TCGA-GN-A261 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-GN-A262                    TCGA-GN-A263 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-GN-A264                    TCGA-GN-A265 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-GN-A266                    TCGA-GN-A267 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A269 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-GN-A26A                    TCGA-GN-A26C 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-GN-A26D                    TCGA-IH-A3EA 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
[1] "hr=" "1.5"
D37V2, continuous
                               vv
clus                            DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 15(9P21.3) MUTATED                   24            19
  DEL PEAK 15(9P21.3) WILD-TYPE                  3             7
                               vv
clus                            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 15(9P21.3) MUTATED                                                                                         31
  DEL PEAK 15(9P21.3) WILD-TYPE                                                                                        6
                               vv
clus                            REGIONAL LYMPH NODE
  DEL PEAK 15(9P21.3) MUTATED                    86
  DEL PEAK 15(9P21.3) WILD-TYPE                  26
D37V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 15(9P21.3) MUTATED
  DISTANT METASTASIS                                                                                                24
  PRIMARY TUMOR                                                                                                     19
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          31
  REGIONAL LYMPH NODE                                                                                               86
                                                                                          clus
vv                                                                                         DEL PEAK 15(9P21.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                   3
  PRIMARY TUMOR                                                                                                        7
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             6
  REGIONAL LYMPH NODE                                                                                                 26
D37V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(9P21.3) MUTATED     65   95
  DEL PEAK 15(9P21.3) WILD-TYPE   11   31
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  FEMALE                          65                            11
  MALE                            95                            31
D37V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(9P21.3) MUTATED      1  159
  DEL PEAK 15(9P21.3) WILD-TYPE    2   40
     clus
vv    DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  NO                            1                             2
  YES                         159                            40
                               vv
clus                             M0  M1 M1A M1B M1C
  DEL PEAK 15(9P21.3) MUTATED   136   2   1   2   3
  DEL PEAK 15(9P21.3) WILD-TYPE  40   0   1   0   0
D37V6, multiclass
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 15(9P21.3) MUTATED   86  1   6  15  1   2  10   5 15  5
  DEL PEAK 15(9P21.3) WILD-TYPE 24  1   2   2  0   3   4   1  4  0
D37V7, multiclass
D37V8, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 15(9P21.3) MUTATED             4      11        8       10       16
  DEL PEAK 15(9P21.3) WILD-TYPE           0       6        2        5        4
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 15(9P21.3) MUTATED           8         8        19         8
  DEL PEAK 15(9P21.3) WILD-TYPE         1         2         4         1
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 15(9P21.3) MUTATED            4         16         20        7
  DEL PEAK 15(9P21.3) WILD-TYPE          3          5          7        0
D37V9, multiclass

Clustering(38) Variable = Del Peak 16(10p15.3) mutation analysis
D38V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 16(10P15.3) MUTATED   28 33
  DEL PEAK 16(10P15.3) WILD-TYPE 31 22
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                            61                             53 
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                            33                             22 
$`DEL PEAK 16(10P15.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 
       16.47        32.55        70.16        98.76        28.08        10.26 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       11.41         6.35        13.32        24.00         9.30         5.39 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
        2.86        35.80        51.12        39.19        13.68         9.99 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A3F5 TCGA-EB-A24C 
       44.52        36.69        25.15         4.93        17.56         0.43 
TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A3Y6 
        1.35         1.28         1.18         0.30         0.13         0.53 
TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A20B 
        0.20         0.39         6.31         1.12         4.27        36.07 
TCGA-EE-A20H TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
        8.81         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A2 TCGA-EE-A2A5 
        8.12         9.99         6.48         8.09        23.90         9.67 
TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3YN 
        3.52        12.99         6.58         1.71        12.10         5.95 
TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       24.00         8.81        31.33        10.09        16.21        15.39 
TCGA-GN-A26A 
       12.16 

$`DEL PEAK 16(10P15.3) WILD-TYPE`
TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-D3-A3CC 
       22.55         8.38        21.14        30.87        15.25        45.70 
TCGA-D9-A3Z1 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1I0 TCGA-DA-A1IB TCGA-DA-A1IC 
        4.01         3.88        48.79        10.03        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A41A TCGA-EB-A41B 
       19.36         7.00        14.83         0.53         0.26         0.10 
TCGA-EE-A17X TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C 
       11.57         1.35        12.20         5.13         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29R TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 
       11.15        38.63         8.84         2.43        11.31        25.28 
TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
        8.94        11.11         4.18        28.64        42.84        78.44 
TCGA-FR-A3R1 TCGA-FR-A44A TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC 
       10.09        72.16        53.82         3.22        10.78         6.41 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 
        0.20         1.02         0.13        15.35        24.85        15.35 
TCGA-GN-A265 TCGA-GN-A269 TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
       84.72         5.59        24.00        14.70        12.59 

  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                          0.13                           0.10 
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                         98.76                          84.72 
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                          9.99                          11.31 
[1] "0.1 - 98.8 (10.0)" "0.1 - 84.7 (11.3)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
[1] "hr=" "1.5"
D38V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 16(10P15.3) MUTATED                   14            14
  DEL PEAK 16(10P15.3) WILD-TYPE                 13            12
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 16(10P15.3) MUTATED                                                                                         26
  DEL PEAK 16(10P15.3) WILD-TYPE                                                                                       11
                                vv
clus                             REGIONAL LYMPH NODE
  DEL PEAK 16(10P15.3) MUTATED                    55
  DEL PEAK 16(10P15.3) WILD-TYPE                  57
D38V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 16(10P15.3) MUTATED
  DISTANT METASTASIS                                                                                                 14
  PRIMARY TUMOR                                                                                                      14
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           26
  REGIONAL LYMPH NODE                                                                                                55
                                                                                          clus
vv                                                                                         DEL PEAK 16(10P15.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                   13
  PRIMARY TUMOR                                                                                                        12
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             11
  REGIONAL LYMPH NODE                                                                                                  57
D38V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(10P15.3) MUTATED     45   64
  DEL PEAK 16(10P15.3) WILD-TYPE   31   62
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  FEMALE                           45                             31
  MALE                             64                             62
D38V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(10P15.3) MUTATED      1  108
  DEL PEAK 16(10P15.3) WILD-TYPE    2   91
     clus
vv    DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  NO                             1                              2
  YES                          108                             91
                                vv
clus                             M0 M1 M1A M1B M1C
  DEL PEAK 16(10P15.3) MUTATED   96  0   1   1   2
  DEL PEAK 16(10P15.3) WILD-TYPE 80  2   1   1   1
D38V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 16(10P15.3) MUTATED   58  1   7   9  0   2   7   4  9  4
  DEL PEAK 16(10P15.3) WILD-TYPE 52  1   1   8  1   3   7   2 10  1
D38V7, multiclass
D38V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 16(10P15.3) MUTATED             4       7        6        8       11
  DEL PEAK 16(10P15.3) WILD-TYPE           0      10        4        7        9
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 16(10P15.3) MUTATED           3         6        13         5
  DEL PEAK 16(10P15.3) WILD-TYPE         6         4        10         4
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 16(10P15.3) MUTATED            5         12         14        4
  DEL PEAK 16(10P15.3) WILD-TYPE          2          9         13        3
D38V9, multiclass

Clustering(39) Variable = Del Peak 17(10q23.31) mutation analysis
D39V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 17(10Q23.31) MUTATED   33 34
  DEL PEAK 17(10Q23.31) WILD-TYPE 26 21
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                             67                              47 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                             34                              21 
$`DEL PEAK 17(10Q23.31) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF 
       11.41         6.35        15.25        45.70        13.32        24.00 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HW TCGA-DA-A1I1 
        9.30         5.39         2.86         3.88        35.80        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       13.68         9.99        44.52        36.69        25.15         4.93 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3XB 
       17.56        14.83         0.43         1.35         1.28         1.18 
TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A42Z TCGA-EE-A17Z TCGA-EE-A181 
        0.30         0.13         0.53         0.39         6.31         1.12 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A29H 
        4.27        36.07         5.13         8.81        11.15         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29X 
        1.08        27.12        12.03         8.12         6.48         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19L 
       11.31        23.90         9.67         8.94         3.52        12.99 
TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR 
        1.71        12.10         5.95        72.16        24.00         8.81 
TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 
        0.20         0.13        24.85        31.33        10.09        16.21 
TCGA-GN-A26A 
       12.16 

$`DEL PEAK 17(10Q23.31) WILD-TYPE`
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D9-A3Z1 TCGA-DA-A1HV 
       10.26         8.38        21.14        30.87         4.01        48.79 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       51.12        10.03        22.36         6.64        19.36         7.00 
TCGA-EB-A1NK TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EE-A17X TCGA-EE-A182 
        0.53         0.26         0.10         0.20        11.57         1.35 
TCGA-EE-A183 TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29R 
       12.20         7.96        37.97        38.63         9.47         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A1 TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19M 
        9.99         2.43        25.28        11.11         4.18        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A3R1 TCGA-FS-A4F0 TCGA-FS-A4F2 
       42.84        78.44         6.58        10.09        53.82         3.22 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A263 TCGA-GN-A265 
       10.78         6.41         1.02        15.35        15.35        84.72 
TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
       15.39         5.59        24.00        14.70        12.59 

  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                           0.13                            0.10 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                          98.76                           84.72 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                          10.09                           10.78 
[1] "0.1 - 98.8 (10.1)" "0.1 - 84.7 (10.8)"
                     TCGA-D3-A1Q1                      TCGA-D3-A1Q5 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A1Q6                      TCGA-D3-A1Q7 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A1Q8                      TCGA-D3-A1Q9 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A2J6                      TCGA-D3-A2J8 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-D3-A2J9                      TCGA-D3-A2JD 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A2JF                      TCGA-D3-A2JK 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A3C6                      TCGA-D3-A3CC 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A3CE                      TCGA-D3-A3CF 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A3MO                      TCGA-D3-A3MV 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D9-A3Z1                      TCGA-D9-A3Z3 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D9-A3Z4                      TCGA-DA-A1HV 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A1HW                      TCGA-DA-A1HY 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A1I0                      TCGA-DA-A1I1 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DA-A1I2                      TCGA-DA-A1I4 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DA-A1I5                      TCGA-DA-A1I7 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DA-A1I8                      TCGA-DA-A1IA 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DA-A1IB                      TCGA-DA-A1IC 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A3F2                      TCGA-DA-A3F3 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A3F5                      TCGA-DA-A3F8 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A1NK                      TCGA-EB-A24C 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A24D                      TCGA-EB-A3HV 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A3XB                      TCGA-EB-A3XC 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A3XF                      TCGA-EB-A3Y6 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A41A                      TCGA-EB-A41B 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EB-A42Y                      TCGA-EB-A42Z 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A17X                      TCGA-EE-A17Z 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A181                      TCGA-EE-A182 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A183                      TCGA-EE-A185 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A20B                      TCGA-EE-A20F 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A20H                      TCGA-EE-A29A 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A29C                      TCGA-EE-A29D 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29E                      TCGA-EE-A29H 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29L                      TCGA-EE-A29M 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29N                      TCGA-EE-A29P 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29Q                      TCGA-EE-A29R 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A29S                      TCGA-EE-A29T 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29V                      TCGA-EE-A29X 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A2A0                      TCGA-EE-A2A1 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A2A2                      TCGA-EE-A2A5 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A2A6                      TCGA-ER-A19D 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-ER-A19F                      TCGA-ER-A19J 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A19L                      TCGA-ER-A19M 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A19N                      TCGA-ER-A1A1 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A3ET                      TCGA-ER-A3PL 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-FR-A2OS                      TCGA-FR-A3R1 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FR-A3YN                      TCGA-FR-A44A 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-FS-A1ZN                      TCGA-FS-A1ZR 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-FS-A4F0                      TCGA-FS-A4F2 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FS-A4F9                      TCGA-FS-A4FC 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FW-A3I3                      TCGA-FW-A3R5 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FW-A3TU                      TCGA-GN-A261 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A262                      TCGA-GN-A263 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A264                      TCGA-GN-A265 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A266                      TCGA-GN-A267 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-GN-A268                      TCGA-GN-A269 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A26A                      TCGA-GN-A26C 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A26D                      TCGA-IH-A3EA 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-D3-A1Q1                      TCGA-D3-A1Q5 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A1Q6                      TCGA-D3-A1Q7 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A1Q8                      TCGA-D3-A1Q9 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A2J6                      TCGA-D3-A2J8 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-D3-A2J9                      TCGA-D3-A2JD 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A2JF                      TCGA-D3-A2JK 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A3C6                      TCGA-D3-A3CC 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A3CE                      TCGA-D3-A3CF 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A3MO                      TCGA-D3-A3MV 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D9-A3Z1                      TCGA-D9-A3Z3 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D9-A3Z4                      TCGA-DA-A1HV 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A1HW                      TCGA-DA-A1HY 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A1I0                      TCGA-DA-A1I1 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DA-A1I2                      TCGA-DA-A1I4 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DA-A1I5                      TCGA-DA-A1I7 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DA-A1I8                      TCGA-DA-A1IA 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DA-A1IB                      TCGA-DA-A1IC 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A3F2                      TCGA-DA-A3F3 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A3F5                      TCGA-DA-A3F8 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A1NK                      TCGA-EB-A24C 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A24D                      TCGA-EB-A3HV 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A3XB                      TCGA-EB-A3XC 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A3XF                      TCGA-EB-A3Y6 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A41A                      TCGA-EB-A41B 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EB-A42Y                      TCGA-EB-A42Z 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A17X                      TCGA-EE-A17Z 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A181                      TCGA-EE-A182 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A183                      TCGA-EE-A185 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A20B                      TCGA-EE-A20F 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A20H                      TCGA-EE-A29A 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A29C                      TCGA-EE-A29D 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29E                      TCGA-EE-A29H 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29L                      TCGA-EE-A29M 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29N                      TCGA-EE-A29P 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29Q                      TCGA-EE-A29R 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A29S                      TCGA-EE-A29T 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29V                      TCGA-EE-A29X 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A2A0                      TCGA-EE-A2A1 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A2A2                      TCGA-EE-A2A5 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A2A6                      TCGA-ER-A19D 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-ER-A19F                      TCGA-ER-A19J 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A19L                      TCGA-ER-A19M 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A19N                      TCGA-ER-A1A1 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A3ET                      TCGA-ER-A3PL 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-FR-A2OS                      TCGA-FR-A3R1 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FR-A3YN                      TCGA-FR-A44A 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-FS-A1ZN                      TCGA-FS-A1ZR 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-FS-A4F0                      TCGA-FS-A4F2 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FS-A4F9                      TCGA-FS-A4FC 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FW-A3I3                      TCGA-FW-A3R5 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FW-A3TU                      TCGA-GN-A261 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A262                      TCGA-GN-A263 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A264                      TCGA-GN-A265 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A266                      TCGA-GN-A267 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-GN-A268                      TCGA-GN-A269 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A26A                      TCGA-GN-A26C 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A26D                      TCGA-IH-A3EA 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-D3-A1Q1                      TCGA-D3-A1Q5 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A1Q6                      TCGA-D3-A1Q7 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A1Q8                      TCGA-D3-A1Q9 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A2J6                      TCGA-D3-A2J8 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-D3-A2J9                      TCGA-D3-A2JD 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A2JF                      TCGA-D3-A2JK 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A3C6                      TCGA-D3-A3CC 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A3CE                      TCGA-D3-A3CF 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D3-A3MO                      TCGA-D3-A3MV 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D9-A3Z1                      TCGA-D9-A3Z3 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-D9-A3Z4                      TCGA-DA-A1HV 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A1HW                      TCGA-DA-A1HY 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A1I0                      TCGA-DA-A1I1 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DA-A1I2                      TCGA-DA-A1I4 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DA-A1I5                      TCGA-DA-A1I7 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DA-A1I8                      TCGA-DA-A1IA 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DA-A1IB                      TCGA-DA-A1IC 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A3F2                      TCGA-DA-A3F3 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A3F5                      TCGA-DA-A3F8 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A1NK                      TCGA-EB-A24C 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A24D                      TCGA-EB-A3HV 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A3XB                      TCGA-EB-A3XC 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A3XF                      TCGA-EB-A3Y6 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EB-A41A                      TCGA-EB-A41B 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EB-A42Y                      TCGA-EB-A42Z 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A17X                      TCGA-EE-A17Z 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A181                      TCGA-EE-A182 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A183                      TCGA-EE-A185 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A20B                      TCGA-EE-A20F 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A20H                      TCGA-EE-A29A 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A29C                      TCGA-EE-A29D 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29E                      TCGA-EE-A29H 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29L                      TCGA-EE-A29M 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29N                      TCGA-EE-A29P 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29Q                      TCGA-EE-A29R 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A29S                      TCGA-EE-A29T 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A29V                      TCGA-EE-A29X 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A2A0                      TCGA-EE-A2A1 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A2A2                      TCGA-EE-A2A5 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-EE-A2A6                      TCGA-ER-A19D 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-ER-A19F                      TCGA-ER-A19J 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A19L                      TCGA-ER-A19M 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A19N                      TCGA-ER-A1A1 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A3ET                      TCGA-ER-A3PL 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-FR-A2OS                      TCGA-FR-A3R1 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FR-A3YN                      TCGA-FR-A44A 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-FS-A1ZN                      TCGA-FS-A1ZR 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-FS-A4F0                      TCGA-FS-A4F2 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FS-A4F9                      TCGA-FS-A4FC 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FW-A3I3                      TCGA-FW-A3R5 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FW-A3TU                      TCGA-GN-A261 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A262                      TCGA-GN-A263 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A264                      TCGA-GN-A265 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A266                      TCGA-GN-A267 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-GN-A268                      TCGA-GN-A269 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A26A                      TCGA-GN-A26C 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-GN-A26D                      TCGA-IH-A3EA 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
[1] "hr=" "1.2"
D39V2, continuous
                                 vv
clus                              DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 17(10Q23.31) MUTATED                   17            16
  DEL PEAK 17(10Q23.31) WILD-TYPE                 10            10
                                 vv
clus                              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 17(10Q23.31) MUTATED                                                                                         29
  DEL PEAK 17(10Q23.31) WILD-TYPE                                                                                        8
                                 vv
clus                              REGIONAL LYMPH NODE
  DEL PEAK 17(10Q23.31) MUTATED                    64
  DEL PEAK 17(10Q23.31) WILD-TYPE                  48
D39V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 17(10Q23.31) MUTATED
  DISTANT METASTASIS                                                                                                  17
  PRIMARY TUMOR                                                                                                       16
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            29
  REGIONAL LYMPH NODE                                                                                                 64
                                                                                          clus
vv                                                                                         DEL PEAK 17(10Q23.31) WILD-TYPE
  DISTANT METASTASIS                                                                                                    10
  PRIMARY TUMOR                                                                                                         10
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                               8
  REGIONAL LYMPH NODE                                                                                                   48
D39V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(10Q23.31) MUTATED     56   70
  DEL PEAK 17(10Q23.31) WILD-TYPE   20   56
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  FEMALE                            56                              20
  MALE                              70                              56
D39V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(10Q23.31) MUTATED      1  125
  DEL PEAK 17(10Q23.31) WILD-TYPE    2   74
     clus
vv    DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  NO                              1                               2
  YES                           125                              74
                                 vv
clus                               M0  M1 M1A M1B M1C
  DEL PEAK 17(10Q23.31) MUTATED   107   1   1   2   2
  DEL PEAK 17(10Q23.31) WILD-TYPE  69   1   1   0   1
D39V6, multiclass
                                 vv
clus                              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 17(10Q23.31) MUTATED   66  1   6  11  0   3   8   4 10  5
  DEL PEAK 17(10Q23.31) WILD-TYPE 44  1   2   6  1   2   6   2  9  0
D39V7, multiclass
D39V8, continuous
                                 vv
clus                              I OR II NOS STAGE I STAGE IA STAGE IB
  DEL PEAK 17(10Q23.31) MUTATED             4       7        8        9
  DEL PEAK 17(10Q23.31) WILD-TYPE           0      10        2        6
                                 vv
clus                              STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 17(10Q23.31) MUTATED         13         5         6        14
  DEL PEAK 17(10Q23.31) WILD-TYPE        7         4         4         9
                                 vv
clus                              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 17(10Q23.31) MUTATED           6          4         14         14
  DEL PEAK 17(10Q23.31) WILD-TYPE         3          3          7         13
                                 vv
clus                              STAGE IV
  DEL PEAK 17(10Q23.31) MUTATED          5
  DEL PEAK 17(10Q23.31) WILD-TYPE        2
D39V9, multiclass

Clustering(40) Variable = Del Peak 18(10q26.3) mutation analysis
D40V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 18(10Q26.3) MUTATED   34 32
  DEL PEAK 18(10Q26.3) WILD-TYPE 25 23
  DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE 
                            66                             48 
  DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE 
                            32                             23 
$`DEL PEAK 18(10Q26.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF 
       11.41         6.35        15.25        45.70        13.32        24.00 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HW TCGA-DA-A1HY 
        9.30         5.39         2.86         3.88        35.80        51.12 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       39.19        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A1IA TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3HV 
        4.93        17.56        14.83         0.43         1.35         1.28 
TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A42Z TCGA-EE-A17Z 
        1.18         0.30         0.13         0.53         0.39         6.31 
TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29D 
        1.12         4.27        36.07         5.13         8.81        11.15 
TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29X 
        4.41        27.12        12.03         8.12         6.48         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19L 
       11.31        23.90         9.67         8.94         3.52        12.99 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZN 
        6.58         1.71        12.10         5.95        72.16        24.00 
TCGA-FS-A1ZR TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A26A 
        8.81         0.13        24.85        31.33        10.09        12.16 

$`DEL PEAK 18(10Q26.3) WILD-TYPE`
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D9-A3Z1 TCGA-DA-A1HV 
       10.26         8.38        21.14        30.87         4.01        48.79 
TCGA-DA-A1I0 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-EB-A1NK 
       10.03        22.36         6.64        19.36         7.00         0.53 
TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EE-A17X TCGA-EE-A182 TCGA-EE-A183 
        0.26         0.10         0.20        11.57         1.35        12.20 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29R 
        7.96        37.97        38.63         1.08         9.47         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A1 TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19M 
        9.99         2.43        25.28        11.11         4.18        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A3R1 TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 
       42.84        78.44        10.09        53.82         3.22        10.78 
TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A263 TCGA-GN-A265 
        6.41         0.20         1.02        15.35        15.35        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
       16.21        15.39         5.59        24.00        14.70        12.59 

  DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE 
                          0.13                           0.10 
  DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE 
                         98.76                          84.72 
  DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE 
                         10.62                          10.52 
[1] "0.1 - 98.8 (10.6)" "0.1 - 84.7 (10.5)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 18(10Q26.3) WILD-TYPE"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
  "DEL PEAK 18(10Q26.3) MUTATED"   "DEL PEAK 18(10Q26.3) MUTATED" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "DEL PEAK 18(10Q26.3) MUTATED" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 18(10Q26.3) WILD-TYPE" "DEL PEAK 18(10Q26.3) WILD-TYPE" 
[1] "hr=" "1"  
D40V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 18(10Q26.3) MUTATED                   16            16
  DEL PEAK 18(10Q26.3) WILD-TYPE                 11            10
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 18(10Q26.3) MUTATED                                                                                         31
  DEL PEAK 18(10Q26.3) WILD-TYPE                                                                                        6
                                vv
clus                             REGIONAL LYMPH NODE
  DEL PEAK 18(10Q26.3) MUTATED                    63
  DEL PEAK 18(10Q26.3) WILD-TYPE                  49
D40V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 18(10Q26.3) MUTATED
  DISTANT METASTASIS                                                                                                 16
  PRIMARY TUMOR                                                                                                      16
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           31
  REGIONAL LYMPH NODE                                                                                                63
                                                                                          clus
vv                                                                                         DEL PEAK 18(10Q26.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                   11
  PRIMARY TUMOR                                                                                                        10
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                              6
  REGIONAL LYMPH NODE                                                                                                  49
D40V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q26.3) MUTATED     56   70
  DEL PEAK 18(10Q26.3) WILD-TYPE   20   56
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  FEMALE                           56                             20
  MALE                             70                             56
D40V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q26.3) MUTATED      1  125
  DEL PEAK 18(10Q26.3) WILD-TYPE    2   74
     clus
vv    DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  NO                             1                              2
  YES                          125                             74
                                vv
clus                              M0  M1 M1A M1B M1C
  DEL PEAK 18(10Q26.3) MUTATED   108   0   1   2   2
  DEL PEAK 18(10Q26.3) WILD-TYPE  68   2   1   0   1
D40V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 18(10Q26.3) MUTATED   67  1   6  11  0   3   8   4 10  4
  DEL PEAK 18(10Q26.3) WILD-TYPE 43  1   2   6  1   2   6   2  9  1
D40V7, multiclass
D40V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 18(10Q26.3) MUTATED             4      10        8        9       13
  DEL PEAK 18(10Q26.3) WILD-TYPE           0       7        2        6        7
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 18(10Q26.3) MUTATED           4         6        14         6
  DEL PEAK 18(10Q26.3) WILD-TYPE         5         4         9         3
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 18(10Q26.3) MUTATED            4         14         14        4
  DEL PEAK 18(10Q26.3) WILD-TYPE          3          7         13        3
D40V9, multiclass

Clustering(41) Variable = Del Peak 19(11q23.3) mutation analysis
D41V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(11Q23.3) MUTATED   38 29
  DEL PEAK 19(11Q23.3) WILD-TYPE 21 26
  DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE 
                            67                             47 
  DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE 
                            29                             26 
$`DEL PEAK 19(11Q23.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JD 
       16.47        32.55        98.76        22.55        10.26        11.41 
TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       30.87        15.25        45.70        24.00         9.30         5.39 
TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I5 
        2.86         3.88        48.79        35.80        39.19        44.52 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EB-A24C TCGA-EB-A24D 
       25.15         4.93         7.00        17.56         0.43         1.35 
TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3Y6 TCGA-EB-A41B TCGA-EB-A42Z 
        1.28         1.18         0.30         0.53         0.10         0.39 
TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        1.35        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q 
       11.15         4.41         1.08        27.12         9.47         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A2 TCGA-EE-A2A5 
        8.84         9.99         6.48         2.43        23.90         9.67 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A3ET 
        3.52        11.11        12.99        28.64        42.84         6.58 
TCGA-ER-A3PL TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FW-A3I3 TCGA-FW-A3TU 
        1.71        10.09         5.95        72.16         0.20         0.13 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       24.85        31.33        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

$`DEL PEAK 19(11Q23.3) WILD-TYPE`
TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JK TCGA-D3-A3CE 
       70.16        28.08         8.38        21.14         6.35        13.32 
TCGA-D9-A3Z1 TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 
        4.01        51.12        10.03        13.68         9.99        36.69 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A3XF 
       22.36         6.64        19.36        14.83         0.53         0.13 
TCGA-EB-A41A TCGA-EB-A42Y TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
        0.26         0.20        11.57         6.31         1.12        12.20 
TCGA-EE-A185 TCGA-EE-A29E TCGA-EE-A29P TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        4.27        38.63        12.03         8.09        11.31        25.28 
TCGA-EE-A2A6 TCGA-ER-A19J TCGA-ER-A1A1 TCGA-FR-A2OS TCGA-FS-A1ZN TCGA-FS-A1ZR 
        8.94         4.18        78.44        12.10        24.00         8.81 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-GN-A261 
       53.82         3.22        10.78         6.41         1.02        15.35 
TCGA-GN-A263 TCGA-GN-A265 TCGA-GN-A269 TCGA-GN-A26C TCGA-IH-A3EA 
       15.35        84.72         5.59        24.00        12.59 

  DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE 
                          0.10                           0.13 
  DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE 
                         98.76                          84.72 
  DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE 
                         10.09                          11.57 
[1] "0.1 - 98.8 (10.1)" "0.1 - 84.7 (11.6)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 19(11Q23.3) WILD-TYPE"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 19(11Q23.3) WILD-TYPE" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 19(11Q23.3) MUTATED"   "DEL PEAK 19(11Q23.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 19(11Q23.3) MUTATED" "DEL PEAK 19(11Q23.3) WILD-TYPE" 
[1] "hr=" "1.2"
D41V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 19(11Q23.3) MUTATED                   21            13
  DEL PEAK 19(11Q23.3) WILD-TYPE                  6            13
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 19(11Q23.3) MUTATED                                                                                         21
  DEL PEAK 19(11Q23.3) WILD-TYPE                                                                                       16
                                vv
clus                             REGIONAL LYMPH NODE
  DEL PEAK 19(11Q23.3) MUTATED                    60
  DEL PEAK 19(11Q23.3) WILD-TYPE                  52
D41V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 19(11Q23.3) MUTATED
  DISTANT METASTASIS                                                                                                 21
  PRIMARY TUMOR                                                                                                      13
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           21
  REGIONAL LYMPH NODE                                                                                                60
                                                                                          clus
vv                                                                                         DEL PEAK 19(11Q23.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                    6
  PRIMARY TUMOR                                                                                                        13
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             16
  REGIONAL LYMPH NODE                                                                                                  52
D41V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q23.3) MUTATED     46   69
  DEL PEAK 19(11Q23.3) WILD-TYPE   30   57
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  FEMALE                           46                             30
  MALE                             69                             57
D41V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q23.3) MUTATED      0  115
  DEL PEAK 19(11Q23.3) WILD-TYPE    3   84
     clus
vv    DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  NO                             0                              3
  YES                          115                             84
                                vv
clus                             M0 M1 M1A M1B M1C
  DEL PEAK 19(11Q23.3) MUTATED   99  1   1   1   2
  DEL PEAK 19(11Q23.3) WILD-TYPE 77  1   1   1   1
D41V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 19(11Q23.3) MUTATED   61  0   6  14  0   4   3   5  8  4
  DEL PEAK 19(11Q23.3) WILD-TYPE 49  2   2   3  1   1  11   1 11  1
D41V7, multiclass
D41V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 19(11Q23.3) MUTATED             2       8        8        9       10
  DEL PEAK 19(11Q23.3) WILD-TYPE           2       9        2        6       10
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 19(11Q23.3) MUTATED           1         6        14         3
  DEL PEAK 19(11Q23.3) WILD-TYPE         8         4         9         6
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 19(11Q23.3) MUTATED            5         14         14        4
  DEL PEAK 19(11Q23.3) WILD-TYPE          2          7         13        3
D41V9, multiclass

Clustering(42) Variable = Del Peak 20(12q24.33) mutation analysis
D42V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 20(12Q24.33) MUTATED   18 10
  DEL PEAK 20(12Q24.33) WILD-TYPE 41 45
  DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE 
                             28                              86 
  DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE 
                             10                              45 
$`DEL PEAK 20(12Q24.33) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A2J6 TCGA-D3-A3CC TCGA-D3-A3MV TCGA-DA-A1I1 TCGA-DA-A1IA 
       16.47        10.26        45.70         5.39        39.19         4.93 
TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3HV TCGA-EB-A3Y6 TCGA-EB-A42Z 
        0.53         0.43         1.35         1.28         0.53         0.39 
TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A2 
       36.07         8.81         8.12         9.99         8.09        23.90 
TCGA-EE-A2A5 TCGA-ER-A3PL TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-FW-A3TU 
        9.67         1.71         3.22        10.78         1.02         0.13 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       84.72        10.09        16.21        15.39 

$`DEL PEAK 20(12Q24.33) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 
       32.55        70.16        98.76        28.08        22.55         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE 
       21.14        11.41        30.87         6.35        15.25        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HV 
       24.00         9.30         4.01         2.86         3.88        48.79 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
       35.80        51.12        10.03        13.68         9.99        44.52 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A41A 
       17.56        14.83         1.18         0.30         0.13         0.26 
TCGA-EB-A41B TCGA-EB-A42Y TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
        0.10         0.20        11.57         6.31         1.12         1.35 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       12.20         4.27         5.13         7.96        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       38.63         4.41         1.08        27.12         9.47        12.03 
TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A6 
        8.84         6.48         2.43        11.31        25.28         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A 
       78.44         6.58        12.10        10.09         5.95        72.16 
TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-GN-A261 
       24.00         8.81        53.82         6.41         0.20        15.35 
TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C 
       24.85        15.35        31.33         5.59        12.16        24.00 
TCGA-GN-A26D TCGA-IH-A3EA 
       14.70        12.59 

  DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE 
                           0.13                            0.10 
  DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE 
                          84.72                           98.76 
  DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE 
                          8.465                          11.800 
[1] "0.1 - 84.7 (8.5)"  "0.1 - 98.8 (11.8)"
                     TCGA-D3-A1Q1                      TCGA-D3-A1Q5 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q6                      TCGA-D3-A1Q7 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q8                      TCGA-D3-A1Q9 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A2J6                      TCGA-D3-A2J8 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A2J9                      TCGA-D3-A2JD 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A2JF                      TCGA-D3-A2JK 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A3C6                      TCGA-D3-A3CC 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-D3-A3CE                      TCGA-D3-A3CF 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A3MO                      TCGA-D3-A3MV 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-D9-A3Z1                      TCGA-D9-A3Z3 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D9-A3Z4                      TCGA-DA-A1HV 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1HW                      TCGA-DA-A1HY 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1I0                      TCGA-DA-A1I1 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-DA-A1I2                      TCGA-DA-A1I4 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1I5                      TCGA-DA-A1I7 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1I8                      TCGA-DA-A1IA 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-DA-A1IB                      TCGA-DA-A1IC 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A3F2                      TCGA-DA-A3F3 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A3F5                      TCGA-DA-A3F8 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EB-A1NK                      TCGA-EB-A24C 
  "DEL PEAK 20(12Q24.33) MUTATED"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EB-A24D                      TCGA-EB-A3HV 
  "DEL PEAK 20(12Q24.33) MUTATED"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EB-A3XB                      TCGA-EB-A3XC 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EB-A3XF                      TCGA-EB-A3Y6 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EB-A41A                      TCGA-EB-A41B 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EB-A42Y                      TCGA-EB-A42Z 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EE-A17X                      TCGA-EE-A17Z 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A181                      TCGA-EE-A182 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A183                      TCGA-EE-A185 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A20B                      TCGA-EE-A20F 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A20H                      TCGA-EE-A29A 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29C                      TCGA-EE-A29D 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29E                      TCGA-EE-A29H 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29L                      TCGA-EE-A29M 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29N                      TCGA-EE-A29P 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29Q                      TCGA-EE-A29R 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29S                      TCGA-EE-A29T 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29V                      TCGA-EE-A29X 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EE-A2A0                      TCGA-EE-A2A1 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2A2                      TCGA-EE-A2A5 
  "DEL PEAK 20(12Q24.33) MUTATED"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EE-A2A6                      TCGA-ER-A19D 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19F                      TCGA-ER-A19J 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19L                      TCGA-ER-A19M 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19N                      TCGA-ER-A1A1 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A3ET                      TCGA-ER-A3PL 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-FR-A2OS                      TCGA-FR-A3R1 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-FR-A3YN                      TCGA-FR-A44A 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1ZN                      TCGA-FS-A1ZR 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A4F0                      TCGA-FS-A4F2 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-FS-A4F9                      TCGA-FS-A4FC 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-FW-A3I3                      TCGA-FW-A3R5 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-FW-A3TU                      TCGA-GN-A261 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A262                      TCGA-GN-A263 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A264                      TCGA-GN-A265 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-GN-A266                      TCGA-GN-A267 
  "DEL PEAK 20(12Q24.33) MUTATED"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-GN-A268                      TCGA-GN-A269 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A26A                      TCGA-GN-A26C 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A26D                      TCGA-IH-A3EA 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q1                      TCGA-D3-A1Q5 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q6                      TCGA-D3-A1Q7 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q8                      TCGA-D3-A1Q9 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A2J6                      TCGA-D3-A2J8 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A2J9                      TCGA-D3-A2JD 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A2JF                      TCGA-D3-A2JK 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A3C6                      TCGA-D3-A3CC 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-D3-A3CE                      TCGA-D3-A3CF 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A3MO                      TCGA-D3-A3MV 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-D9-A3Z1                      TCGA-D9-A3Z3 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D9-A3Z4                      TCGA-DA-A1HV 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1HW                      TCGA-DA-A1HY 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1I0                      TCGA-DA-A1I1 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-DA-A1I2                      TCGA-DA-A1I4 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1I5                      TCGA-DA-A1I7 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1I8                      TCGA-DA-A1IA 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-DA-A1IB                      TCGA-DA-A1IC 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A3F2                      TCGA-DA-A3F3 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A3F5                      TCGA-DA-A3F8 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EB-A1NK                      TCGA-EB-A24C 
  "DEL PEAK 20(12Q24.33) MUTATED"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EB-A24D                      TCGA-EB-A3HV 
  "DEL PEAK 20(12Q24.33) MUTATED"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EB-A3XB                      TCGA-EB-A3XC 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EB-A3XF                      TCGA-EB-A3Y6 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EB-A41A                      TCGA-EB-A41B 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EB-A42Y                      TCGA-EB-A42Z 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EE-A17X                      TCGA-EE-A17Z 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A181                      TCGA-EE-A182 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A183                      TCGA-EE-A185 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A20B                      TCGA-EE-A20F 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A20H                      TCGA-EE-A29A 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29C                      TCGA-EE-A29D 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29E                      TCGA-EE-A29H 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29L                      TCGA-EE-A29M 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29N                      TCGA-EE-A29P 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29Q                      TCGA-EE-A29R 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29S                      TCGA-EE-A29T 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29V                      TCGA-EE-A29X 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EE-A2A0                      TCGA-EE-A2A1 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2A2                      TCGA-EE-A2A5 
  "DEL PEAK 20(12Q24.33) MUTATED"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EE-A2A6                      TCGA-ER-A19D 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19F                      TCGA-ER-A19J 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19L                      TCGA-ER-A19M 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19N                      TCGA-ER-A1A1 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A3ET                      TCGA-ER-A3PL 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-FR-A2OS                      TCGA-FR-A3R1 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-FR-A3YN                      TCGA-FR-A44A 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1ZN                      TCGA-FS-A1ZR 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A4F0                      TCGA-FS-A4F2 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-FS-A4F9                      TCGA-FS-A4FC 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-FW-A3I3                      TCGA-FW-A3R5 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-FW-A3TU                      TCGA-GN-A261 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A262                      TCGA-GN-A263 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A264                      TCGA-GN-A265 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-GN-A266                      TCGA-GN-A267 
  "DEL PEAK 20(12Q24.33) MUTATED"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-GN-A268                      TCGA-GN-A269 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A26A                      TCGA-GN-A26C 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A26D                      TCGA-IH-A3EA 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q1                      TCGA-D3-A1Q5 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q6                      TCGA-D3-A1Q7 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q8                      TCGA-D3-A1Q9 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A2J6                      TCGA-D3-A2J8 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A2J9                      TCGA-D3-A2JD 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A2JF                      TCGA-D3-A2JK 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A3C6                      TCGA-D3-A3CC 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-D3-A3CE                      TCGA-D3-A3CF 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A3MO                      TCGA-D3-A3MV 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-D9-A3Z1                      TCGA-D9-A3Z3 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-D9-A3Z4                      TCGA-DA-A1HV 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1HW                      TCGA-DA-A1HY 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1I0                      TCGA-DA-A1I1 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-DA-A1I2                      TCGA-DA-A1I4 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1I5                      TCGA-DA-A1I7 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1I8                      TCGA-DA-A1IA 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-DA-A1IB                      TCGA-DA-A1IC 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A3F2                      TCGA-DA-A3F3 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A3F5                      TCGA-DA-A3F8 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EB-A1NK                      TCGA-EB-A24C 
  "DEL PEAK 20(12Q24.33) MUTATED"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EB-A24D                      TCGA-EB-A3HV 
  "DEL PEAK 20(12Q24.33) MUTATED"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EB-A3XB                      TCGA-EB-A3XC 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EB-A3XF                      TCGA-EB-A3Y6 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EB-A41A                      TCGA-EB-A41B 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EB-A42Y                      TCGA-EB-A42Z 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EE-A17X                      TCGA-EE-A17Z 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A181                      TCGA-EE-A182 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A183                      TCGA-EE-A185 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A20B                      TCGA-EE-A20F 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A20H                      TCGA-EE-A29A 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29C                      TCGA-EE-A29D 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29E                      TCGA-EE-A29H 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29L                      TCGA-EE-A29M 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29N                      TCGA-EE-A29P 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29Q                      TCGA-EE-A29R 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29S                      TCGA-EE-A29T 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29V                      TCGA-EE-A29X 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EE-A2A0                      TCGA-EE-A2A1 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2A2                      TCGA-EE-A2A5 
  "DEL PEAK 20(12Q24.33) MUTATED"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-EE-A2A6                      TCGA-ER-A19D 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19F                      TCGA-ER-A19J 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19L                      TCGA-ER-A19M 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19N                      TCGA-ER-A1A1 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A3ET                      TCGA-ER-A3PL 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-FR-A2OS                      TCGA-FR-A3R1 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-FR-A3YN                      TCGA-FR-A44A 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1ZN                      TCGA-FS-A1ZR 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A4F0                      TCGA-FS-A4F2 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-FS-A4F9                      TCGA-FS-A4FC 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-FW-A3I3                      TCGA-FW-A3R5 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-FW-A3TU                      TCGA-GN-A261 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A262                      TCGA-GN-A263 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A264                      TCGA-GN-A265 
"DEL PEAK 20(12Q24.33) WILD-TYPE"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-GN-A266                      TCGA-GN-A267 
  "DEL PEAK 20(12Q24.33) MUTATED"   "DEL PEAK 20(12Q24.33) MUTATED" 
                     TCGA-GN-A268                      TCGA-GN-A269 
  "DEL PEAK 20(12Q24.33) MUTATED" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A26A                      TCGA-GN-A26C 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A26D                      TCGA-IH-A3EA 
"DEL PEAK 20(12Q24.33) WILD-TYPE" "DEL PEAK 20(12Q24.33) WILD-TYPE" 
[1] "hr=" "1"  
D42V2, continuous
                                 vv
clus                              DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 20(12Q24.33) MUTATED                    7             6
  DEL PEAK 20(12Q24.33) WILD-TYPE                 20            20
                                 vv
clus                              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 20(12Q24.33) MUTATED                                                                                         13
  DEL PEAK 20(12Q24.33) WILD-TYPE                                                                                       24
                                 vv
clus                              REGIONAL LYMPH NODE
  DEL PEAK 20(12Q24.33) MUTATED                    21
  DEL PEAK 20(12Q24.33) WILD-TYPE                  91
D42V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 20(12Q24.33) MUTATED
  DISTANT METASTASIS                                                                                                   7
  PRIMARY TUMOR                                                                                                        6
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            13
  REGIONAL LYMPH NODE                                                                                                 21
                                                                                          clus
vv                                                                                         DEL PEAK 20(12Q24.33) WILD-TYPE
  DISTANT METASTASIS                                                                                                    20
  PRIMARY TUMOR                                                                                                         20
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                              24
  REGIONAL LYMPH NODE                                                                                                   91
D42V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 20(12Q24.33) MUTATED     20   27
  DEL PEAK 20(12Q24.33) WILD-TYPE   56   99
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  FEMALE                            20                              56
  MALE                              27                              99
D42V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 20(12Q24.33) MUTATED      1   46
  DEL PEAK 20(12Q24.33) WILD-TYPE    2  153
     clus
vv    DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  NO                              1                               2
  YES                            46                             153
                                 vv
clus                               M0  M1 M1A M1B M1C
  DEL PEAK 20(12Q24.33) MUTATED    39   0   1   0   1
  DEL PEAK 20(12Q24.33) WILD-TYPE 137   2   1   2   2
D42V6, multiclass
                                 vv
clus                              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 20(12Q24.33) MUTATED   24  0   2   4  1   2   2   3  3  1
  DEL PEAK 20(12Q24.33) WILD-TYPE 86  2   6  13  0   3  12   3 16  4
D42V7, multiclass
D42V8, continuous
                                 vv
clus                              I OR II NOS STAGE I STAGE IA STAGE IB
  DEL PEAK 20(12Q24.33) MUTATED             0       6        3        2
  DEL PEAK 20(12Q24.33) WILD-TYPE           4      11        7       13
                                 vv
clus                              STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 20(12Q24.33) MUTATED          3         1         3         6
  DEL PEAK 20(12Q24.33) WILD-TYPE       17         8         7        17
                                 vv
clus                              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 20(12Q24.33) MUTATED           3          1          7          4
  DEL PEAK 20(12Q24.33) WILD-TYPE         6          6         14         23
                                 vv
clus                              STAGE IV
  DEL PEAK 20(12Q24.33) MUTATED          2
  DEL PEAK 20(12Q24.33) WILD-TYPE        5
D42V9, multiclass

Clustering(43) Variable = Del Peak 21(13q34) mutation analysis
D43V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 21(13Q34) MUTATED   13 13
  DEL PEAK 21(13Q34) WILD-TYPE 46 42
  DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE 
                          26                           88 
  DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE 
                          13                           42 
$`DEL PEAK 21(13Q34) MUTATED`
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
       28.08        22.55         8.38         2.86        48.79        35.80 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IC TCGA-DA-A3F5 
       13.68         9.99        44.52        25.15         6.64        17.56 
TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29N 
        1.18         0.30         1.12        11.15        38.63         9.47 
TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A2A6 TCGA-FR-A3YN TCGA-FS-A4F9 TCGA-GN-A266 
        8.12         6.48         8.94         5.95        10.78        10.09 
TCGA-GN-A26C TCGA-GN-A26D 
       24.00        14.70 

$`DEL PEAK 21(13Q34) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A2J6 TCGA-D3-A2J9 
       16.47        32.55        70.16        98.76        10.26        21.14 
TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
       11.41        30.87         6.35        15.25        45.70        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z4 TCGA-DA-A1HY 
       24.00         9.30         5.39         4.01         3.88        51.12 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I7 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 
       10.03        39.19        36.69         4.93        22.36        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A24D TCGA-EB-A3HV 
        7.00        14.83         0.53         0.43         1.35         1.28 
TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z 
        0.13         0.53         0.26         0.10         0.20         0.39 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L 
        5.13         8.81         7.96        37.97         4.41         1.08 
TCGA-EE-A29M TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
       27.12        12.03         8.84         9.99         2.43         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-ER-A19D TCGA-ER-A19F 
       11.31        25.28        23.90         9.67         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR 
        1.71        12.10        10.09        72.16        24.00         8.81 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
       53.82         3.22         6.41         0.20         1.02         0.13 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
       15.35        24.85        15.35        31.33        84.72        16.21 
TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26A TCGA-IH-A3EA 
       15.39         5.59        12.16        12.59 

  DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE 
                         0.3                          0.1 
  DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE 
                       48.79                        98.76 
  DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE 
                      10.435                       10.685 
[1] "0.3 - 48.8 (10.4)" "0.1 - 98.8 (10.7)"
                  TCGA-D3-A1Q1                   TCGA-D3-A1Q5 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A1Q6                   TCGA-D3-A1Q7 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A1Q8                   TCGA-D3-A1Q9 
  "DEL PEAK 21(13Q34) MUTATED"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-D3-A2J6                   TCGA-D3-A2J8 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-D3-A2J9                   TCGA-D3-A2JD 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A2JF                   TCGA-D3-A2JK 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A3C6                   TCGA-D3-A3CC 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A3CE                   TCGA-D3-A3CF 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A3MO                   TCGA-D3-A3MV 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D9-A3Z1                   TCGA-D9-A3Z3 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-D9-A3Z4                   TCGA-DA-A1HV 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-DA-A1HW                   TCGA-DA-A1HY 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A1I0                   TCGA-DA-A1I1 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A1I2                   TCGA-DA-A1I4 
  "DEL PEAK 21(13Q34) MUTATED"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-DA-A1I5                   TCGA-DA-A1I7 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A1I8                   TCGA-DA-A1IA 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A1IB                   TCGA-DA-A1IC 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-DA-A3F2                   TCGA-DA-A3F3 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A3F5                   TCGA-DA-A3F8 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A1NK                   TCGA-EB-A24C 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A24D                   TCGA-EB-A3HV 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A3XB                   TCGA-EB-A3XC 
  "DEL PEAK 21(13Q34) MUTATED"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-EB-A3XF                   TCGA-EB-A3Y6 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A41A                   TCGA-EB-A41B 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A42Y                   TCGA-EB-A42Z 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A17X                   TCGA-EE-A17Z 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A181                   TCGA-EE-A182 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A183                   TCGA-EE-A185 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A20B                   TCGA-EE-A20F 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A20H                   TCGA-EE-A29A 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29C                   TCGA-EE-A29D 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-EE-A29E                   TCGA-EE-A29H 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29L                   TCGA-EE-A29M 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29N                   TCGA-EE-A29P 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29Q                   TCGA-EE-A29R 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29S                   TCGA-EE-A29T 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-EE-A29V                   TCGA-EE-A29X 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A0                   TCGA-EE-A2A1 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A2                   TCGA-EE-A2A5 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A6                   TCGA-ER-A19D 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-ER-A19F                   TCGA-ER-A19J 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-ER-A19L                   TCGA-ER-A19M 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-ER-A19N                   TCGA-ER-A1A1 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-ER-A3ET                   TCGA-ER-A3PL 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FR-A2OS                   TCGA-FR-A3R1 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FR-A3YN                   TCGA-FR-A44A 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FS-A1ZN                   TCGA-FS-A1ZR 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FS-A4F0                   TCGA-FS-A4F2 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FS-A4F9                   TCGA-FS-A4FC 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FW-A3I3                   TCGA-FW-A3R5 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FW-A3TU                   TCGA-GN-A261 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A262                   TCGA-GN-A263 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A264                   TCGA-GN-A265 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A266                   TCGA-GN-A267 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A268                   TCGA-GN-A269 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A26A                   TCGA-GN-A26C 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-GN-A26D                   TCGA-IH-A3EA 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A1Q1                   TCGA-D3-A1Q5 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A1Q6                   TCGA-D3-A1Q7 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A1Q8                   TCGA-D3-A1Q9 
  "DEL PEAK 21(13Q34) MUTATED"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-D3-A2J6                   TCGA-D3-A2J8 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-D3-A2J9                   TCGA-D3-A2JD 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A2JF                   TCGA-D3-A2JK 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A3C6                   TCGA-D3-A3CC 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A3CE                   TCGA-D3-A3CF 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A3MO                   TCGA-D3-A3MV 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D9-A3Z1                   TCGA-D9-A3Z3 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-D9-A3Z4                   TCGA-DA-A1HV 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-DA-A1HW                   TCGA-DA-A1HY 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A1I0                   TCGA-DA-A1I1 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A1I2                   TCGA-DA-A1I4 
  "DEL PEAK 21(13Q34) MUTATED"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-DA-A1I5                   TCGA-DA-A1I7 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A1I8                   TCGA-DA-A1IA 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A1IB                   TCGA-DA-A1IC 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-DA-A3F2                   TCGA-DA-A3F3 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A3F5                   TCGA-DA-A3F8 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A1NK                   TCGA-EB-A24C 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A24D                   TCGA-EB-A3HV 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A3XB                   TCGA-EB-A3XC 
  "DEL PEAK 21(13Q34) MUTATED"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-EB-A3XF                   TCGA-EB-A3Y6 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A41A                   TCGA-EB-A41B 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A42Y                   TCGA-EB-A42Z 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A17X                   TCGA-EE-A17Z 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A181                   TCGA-EE-A182 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A183                   TCGA-EE-A185 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A20B                   TCGA-EE-A20F 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A20H                   TCGA-EE-A29A 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29C                   TCGA-EE-A29D 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-EE-A29E                   TCGA-EE-A29H 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29L                   TCGA-EE-A29M 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29N                   TCGA-EE-A29P 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29Q                   TCGA-EE-A29R 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29S                   TCGA-EE-A29T 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-EE-A29V                   TCGA-EE-A29X 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A0                   TCGA-EE-A2A1 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A2                   TCGA-EE-A2A5 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A6                   TCGA-ER-A19D 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-ER-A19F                   TCGA-ER-A19J 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-ER-A19L                   TCGA-ER-A19M 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-ER-A19N                   TCGA-ER-A1A1 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-ER-A3ET                   TCGA-ER-A3PL 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FR-A2OS                   TCGA-FR-A3R1 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FR-A3YN                   TCGA-FR-A44A 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FS-A1ZN                   TCGA-FS-A1ZR 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FS-A4F0                   TCGA-FS-A4F2 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FS-A4F9                   TCGA-FS-A4FC 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FW-A3I3                   TCGA-FW-A3R5 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FW-A3TU                   TCGA-GN-A261 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A262                   TCGA-GN-A263 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A264                   TCGA-GN-A265 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A266                   TCGA-GN-A267 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A268                   TCGA-GN-A269 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A26A                   TCGA-GN-A26C 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-GN-A26D                   TCGA-IH-A3EA 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A1Q1                   TCGA-D3-A1Q5 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A1Q6                   TCGA-D3-A1Q7 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A1Q8                   TCGA-D3-A1Q9 
  "DEL PEAK 21(13Q34) MUTATED"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-D3-A2J6                   TCGA-D3-A2J8 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-D3-A2J9                   TCGA-D3-A2JD 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A2JF                   TCGA-D3-A2JK 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A3C6                   TCGA-D3-A3CC 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A3CE                   TCGA-D3-A3CF 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D3-A3MO                   TCGA-D3-A3MV 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-D9-A3Z1                   TCGA-D9-A3Z3 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-D9-A3Z4                   TCGA-DA-A1HV 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-DA-A1HW                   TCGA-DA-A1HY 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A1I0                   TCGA-DA-A1I1 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A1I2                   TCGA-DA-A1I4 
  "DEL PEAK 21(13Q34) MUTATED"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-DA-A1I5                   TCGA-DA-A1I7 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A1I8                   TCGA-DA-A1IA 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A1IB                   TCGA-DA-A1IC 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-DA-A3F2                   TCGA-DA-A3F3 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-DA-A3F5                   TCGA-DA-A3F8 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A1NK                   TCGA-EB-A24C 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A24D                   TCGA-EB-A3HV 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A3XB                   TCGA-EB-A3XC 
  "DEL PEAK 21(13Q34) MUTATED"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-EB-A3XF                   TCGA-EB-A3Y6 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A41A                   TCGA-EB-A41B 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EB-A42Y                   TCGA-EB-A42Z 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A17X                   TCGA-EE-A17Z 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A181                   TCGA-EE-A182 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A183                   TCGA-EE-A185 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A20B                   TCGA-EE-A20F 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A20H                   TCGA-EE-A29A 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29C                   TCGA-EE-A29D 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-EE-A29E                   TCGA-EE-A29H 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29L                   TCGA-EE-A29M 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29N                   TCGA-EE-A29P 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29Q                   TCGA-EE-A29R 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A29S                   TCGA-EE-A29T 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-EE-A29V                   TCGA-EE-A29X 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A0                   TCGA-EE-A2A1 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A2                   TCGA-EE-A2A5 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A6                   TCGA-ER-A19D 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-ER-A19F                   TCGA-ER-A19J 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-ER-A19L                   TCGA-ER-A19M 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-ER-A19N                   TCGA-ER-A1A1 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-ER-A3ET                   TCGA-ER-A3PL 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FR-A2OS                   TCGA-FR-A3R1 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FR-A3YN                   TCGA-FR-A44A 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FS-A1ZN                   TCGA-FS-A1ZR 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FS-A4F0                   TCGA-FS-A4F2 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FS-A4F9                   TCGA-FS-A4FC 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FW-A3I3                   TCGA-FW-A3R5 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-FW-A3TU                   TCGA-GN-A261 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A262                   TCGA-GN-A263 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A264                   TCGA-GN-A265 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A266                   TCGA-GN-A267 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A268                   TCGA-GN-A269 
"DEL PEAK 21(13Q34) WILD-TYPE" "DEL PEAK 21(13Q34) WILD-TYPE" 
                  TCGA-GN-A26A                   TCGA-GN-A26C 
"DEL PEAK 21(13Q34) WILD-TYPE"   "DEL PEAK 21(13Q34) MUTATED" 
                  TCGA-GN-A26D                   TCGA-IH-A3EA 
  "DEL PEAK 21(13Q34) MUTATED" "DEL PEAK 21(13Q34) WILD-TYPE" 
[1] "hr=" "1"  
D43V2, continuous
                              vv
clus                           DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 21(13Q34) MUTATED                    2             5
  DEL PEAK 21(13Q34) WILD-TYPE                 25            21
                              vv
clus                           REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 21(13Q34) MUTATED                                                                                          9
  DEL PEAK 21(13Q34) WILD-TYPE                                                                                       28
                              vv
clus                           REGIONAL LYMPH NODE
  DEL PEAK 21(13Q34) MUTATED                    31
  DEL PEAK 21(13Q34) WILD-TYPE                  81
D43V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 21(13Q34) MUTATED
  DISTANT METASTASIS                                                                                                2
  PRIMARY TUMOR                                                                                                     5
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                          9
  REGIONAL LYMPH NODE                                                                                              31
                                                                                          clus
vv                                                                                         DEL PEAK 21(13Q34) WILD-TYPE
  DISTANT METASTASIS                                                                                                 25
  PRIMARY TUMOR                                                                                                      21
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           28
  REGIONAL LYMPH NODE                                                                                                81
D43V4, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 21(13Q34) MUTATED     15   32
  DEL PEAK 21(13Q34) WILD-TYPE   61   94
        clus
vv       DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE
  FEMALE                         15                           61
  MALE                           32                           94
D43V5, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 21(13Q34) MUTATED      1   46
  DEL PEAK 21(13Q34) WILD-TYPE    2  153
     clus
vv    DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE
  NO                           1                            2
  YES                         46                          153
                              vv
clus                            M0  M1 M1A M1B M1C
  DEL PEAK 21(13Q34) MUTATED    40   0   0   2   2
  DEL PEAK 21(13Q34) WILD-TYPE 136   2   2   0   1
D43V6, multiclass
                              vv
clus                           N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 21(13Q34) MUTATED   23  0   0   5  0   1   4   5  5  2
  DEL PEAK 21(13Q34) WILD-TYPE 87  2   8  12  1   4  10   1 14  3
D43V7, multiclass
D43V8, continuous
                              vv
clus                           I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 21(13Q34) MUTATED             0       5        5        2        5
  DEL PEAK 21(13Q34) WILD-TYPE           4      12        5       13       15
                              vv
clus                           STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 21(13Q34) MUTATED           0         1         4         1
  DEL PEAK 21(13Q34) WILD-TYPE         9         9        19         8
                              vv
clus                           STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 21(13Q34) MUTATED            0          9          6        3
  DEL PEAK 21(13Q34) WILD-TYPE          7         12         21        4
D43V9, multiclass

Clustering(44) Variable = Del Peak 22(14q32.2) mutation analysis
D44V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 22(14Q32.2) MUTATED   21 14
  DEL PEAK 22(14Q32.2) WILD-TYPE 38 41
  DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE 
                            35                             79 
  DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE 
                            14                             41 
$`DEL PEAK 22(14Q32.2) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A2J6 TCGA-D3-A2JF TCGA-D3-A3CC TCGA-D3-A3CE 
       16.47        32.55        10.26        30.87        45.70        13.32 
TCGA-D3-A3MV TCGA-D9-A3Z4 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I5 
        5.39         3.88        48.79        51.12        39.19        44.52 
TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-EB-A24D TCGA-EB-A3XB TCGA-EB-A3Y6 TCGA-EB-A41A 
       25.15        17.56         1.35         1.18         0.53         0.26 
TCGA-EB-A41B TCGA-EE-A181 TCGA-EE-A29C TCGA-EE-A29V TCGA-EE-A2A2 TCGA-EE-A2A5 
        0.10         1.12        37.97         2.43        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A3PL TCGA-FR-A44A TCGA-FS-A1ZR TCGA-FS-A4F2 TCGA-FS-A4F9 
        8.94         1.71        72.16         8.81         3.22        10.78 
TCGA-FW-A3TU TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
        0.13        31.33        16.21        15.39        12.16 

$`DEL PEAK 22(14Q32.2) WILD-TYPE`
TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 
       70.16        98.76        28.08        22.55         8.38        21.14 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 
       11.41         6.35        15.25        24.00         9.30         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 
        2.86        35.80        10.03        13.68         9.99        36.69 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 
        4.93        22.36         6.64        19.36         7.00        14.83 
TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A3HV TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A42Y 
        0.53         0.43         1.28         0.30         0.13         0.20 
TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
        0.39        11.57         6.31         1.35        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29E 
       36.07         5.13         8.81         7.96        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        4.41         1.08        27.12         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.84         9.99         6.48         8.09        11.31        25.28 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FS-A1ZN 
       78.44         6.58        12.10        10.09         5.95        24.00 
TCGA-FS-A4F0 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 
       53.82         6.41         0.20         1.02        15.35        24.85 
TCGA-GN-A263 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A269 TCGA-GN-A26C TCGA-GN-A26D 
       15.35        84.72        10.09         5.59        24.00        14.70 
TCGA-IH-A3EA 
       12.59 

  DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE 
                          0.10                           0.13 
  DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE 
                         72.16                          98.76 
  DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE 
                         12.16                          10.09 
[1] "0.1 - 72.2 (12.2)" "0.1 - 98.8 (10.1)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 22(14Q32.2) MUTATED"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 22(14Q32.2) MUTATED"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
  "DEL PEAK 22(14Q32.2) MUTATED"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "DEL PEAK 22(14Q32.2) MUTATED"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 22(14Q32.2) MUTATED"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 22(14Q32.2) MUTATED"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
  "DEL PEAK 22(14Q32.2) MUTATED"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "DEL PEAK 22(14Q32.2) MUTATED"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 22(14Q32.2) MUTATED"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 22(14Q32.2) MUTATED"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
  "DEL PEAK 22(14Q32.2) MUTATED"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
  "DEL PEAK 22(14Q32.2) MUTATED"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 22(14Q32.2) WILD-TYPE"   "DEL PEAK 22(14Q32.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
  "DEL PEAK 22(14Q32.2) MUTATED" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 22(14Q32.2) WILD-TYPE" "DEL PEAK 22(14Q32.2) WILD-TYPE" 
[1] "hr=" "1.6"
D44V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 22(14Q32.2) MUTATED                   12             7
  DEL PEAK 22(14Q32.2) WILD-TYPE                 15            19
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 22(14Q32.2) MUTATED                                                                                         12
  DEL PEAK 22(14Q32.2) WILD-TYPE                                                                                       25
                                vv
clus                             REGIONAL LYMPH NODE
  DEL PEAK 22(14Q32.2) MUTATED                    35
  DEL PEAK 22(14Q32.2) WILD-TYPE                  77
D44V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 22(14Q32.2) MUTATED
  DISTANT METASTASIS                                                                                                 12
  PRIMARY TUMOR                                                                                                       7
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           12
  REGIONAL LYMPH NODE                                                                                                35
                                                                                          clus
vv                                                                                         DEL PEAK 22(14Q32.2) WILD-TYPE
  DISTANT METASTASIS                                                                                                   15
  PRIMARY TUMOR                                                                                                        19
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             25
  REGIONAL LYMPH NODE                                                                                                  77
D44V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q32.2) MUTATED     25   41
  DEL PEAK 22(14Q32.2) WILD-TYPE   51   85
        clus
vv       DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE
  FEMALE                           25                             51
  MALE                             41                             85
D44V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q32.2) MUTATED      0   66
  DEL PEAK 22(14Q32.2) WILD-TYPE    3  133
     clus
vv    DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE
  NO                             0                              3
  YES                           66                            133
                                vv
clus                              M0  M1 M1A M1B M1C
  DEL PEAK 22(14Q32.2) MUTATED    59   0   1   0   2
  DEL PEAK 22(14Q32.2) WILD-TYPE 117   2   1   2   1
D44V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 22(14Q32.2) MUTATED   36  1   4   6  0   1   2   3  7  2
  DEL PEAK 22(14Q32.2) WILD-TYPE 74  1   4  11  1   4  12   3 12  3
D44V7, multiclass
D44V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 22(14Q32.2) MUTATED             4       7        4        2       10
  DEL PEAK 22(14Q32.2) WILD-TYPE           0      10        6       13       10
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 22(14Q32.2) MUTATED           0         2         7         4
  DEL PEAK 22(14Q32.2) WILD-TYPE         9         8        16         5
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 22(14Q32.2) MUTATED            3          6          9        3
  DEL PEAK 22(14Q32.2) WILD-TYPE          4         15         18        4
D44V9, multiclass

Clustering(45) Variable = Del Peak 23(15q13.3) mutation analysis
D45V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(15Q13.3) MUTATED   14 10
  DEL PEAK 23(15Q13.3) WILD-TYPE 45 45
  DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE 
                            24                             90 
  DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE 
                            10                             45 
$`DEL PEAK 23(15Q13.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       16.47        15.25        45.70        48.79        35.80        51.12 
TCGA-DA-A1I1 TCGA-DA-A1I8 TCGA-EB-A24D TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A42Y 
       39.19        25.15         1.35         0.30         0.13         0.20 
TCGA-EE-A17Z TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A2A5 TCGA-FW-A3I3 
        6.31         1.08        12.03         8.12         9.67         0.20 
TCGA-FW-A3TU TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26D TCGA-IH-A3EA 
        0.13        31.33        10.09        16.21        14.70        12.59 

$`DEL PEAK 23(15Q13.3) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       32.55        70.16        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3CE 
        8.38        21.14        11.41        30.87         6.35        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 
       24.00         9.30         5.39         4.01         2.86         3.88 
TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1IA 
       10.03        13.68         9.99        44.52        36.69         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3Y6 TCGA-EB-A41A 
        0.53         0.43         1.28         1.18         0.53         0.26 
TCGA-EB-A41B TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
        0.10         0.39        11.57         1.12         1.35        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.27        36.07         5.13         8.81         7.96        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29R 
       11.15        38.63         4.41        27.12         9.47         8.84 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        9.99         6.48         2.43         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.90         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A2OS 
       28.64        42.84        78.44         6.58         1.71        12.10 
TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 
       10.09         5.95        72.16        24.00         8.81        53.82 
TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 
        3.22        10.78         6.41         1.02        15.35        24.85 
TCGA-GN-A263 TCGA-GN-A265 TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C 
       15.35        84.72        15.39         5.59        12.16        24.00 

  DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE 
                          0.13                           0.10 
  DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE 
                         51.12                          98.76 
  DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE 
                        12.310                         10.175 
[1] "0.1 - 51.1 (12.3)" "0.1 - 98.8 (10.2)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK 23(15Q13.3) MUTATED"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 23(15Q13.3) MUTATED"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 23(15Q13.3) MUTATED"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 23(15Q13.3) MUTATED"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK 23(15Q13.3) MUTATED"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 23(15Q13.3) MUTATED"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 23(15Q13.3) MUTATED"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 23(15Q13.3) MUTATED"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK 23(15Q13.3) MUTATED"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 23(15Q13.3) MUTATED"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 23(15Q13.3) WILD-TYPE"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 23(15Q13.3) MUTATED" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 23(15Q13.3) MUTATED"   "DEL PEAK 23(15Q13.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 23(15Q13.3) WILD-TYPE" "DEL PEAK 23(15Q13.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 23(15Q13.3) MUTATED"   "DEL PEAK 23(15Q13.3) MUTATED" 
[1] "hr=" "1.3"
D45V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 23(15Q13.3) MUTATED                    5             5
  DEL PEAK 23(15Q13.3) WILD-TYPE                 22            21
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 23(15Q13.3) MUTATED                                                                                         10
  DEL PEAK 23(15Q13.3) WILD-TYPE                                                                                       27
                                vv
clus                             REGIONAL LYMPH NODE
  DEL PEAK 23(15Q13.3) MUTATED                    25
  DEL PEAK 23(15Q13.3) WILD-TYPE                  87
D45V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 23(15Q13.3) MUTATED
  DISTANT METASTASIS                                                                                                  5
  PRIMARY TUMOR                                                                                                       5
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           10
  REGIONAL LYMPH NODE                                                                                                25
                                                                                          clus
vv                                                                                         DEL PEAK 23(15Q13.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                   22
  PRIMARY TUMOR                                                                                                        21
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             27
  REGIONAL LYMPH NODE                                                                                                  87
D45V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(15Q13.3) MUTATED     19   26
  DEL PEAK 23(15Q13.3) WILD-TYPE   57  100
        clus
vv       DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE
  FEMALE                           19                             57
  MALE                             26                            100
D45V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(15Q13.3) MUTATED      0   45
  DEL PEAK 23(15Q13.3) WILD-TYPE    3  154
     clus
vv    DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE
  NO                             0                              3
  YES                           45                            154
                                vv
clus                              M0  M1 M1A M1B M1C
  DEL PEAK 23(15Q13.3) MUTATED    38   1   0   1   0
  DEL PEAK 23(15Q13.3) WILD-TYPE 138   1   2   1   3
D45V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 23(15Q13.3) MUTATED   26  0   2   1  0   0   4   1  6  1
  DEL PEAK 23(15Q13.3) WILD-TYPE 84  2   6  16  1   5  10   5 13  4
D45V7, multiclass
D45V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 23(15Q13.3) MUTATED             0       5        2        3        4
  DEL PEAK 23(15Q13.3) WILD-TYPE           4      12        8       12       16
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 23(15Q13.3) MUTATED           0         3         8         2
  DEL PEAK 23(15Q13.3) WILD-TYPE         9         7        15         7
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 23(15Q13.3) MUTATED            1          4          6        1
  DEL PEAK 23(15Q13.3) WILD-TYPE          6         17         21        6
D45V9, multiclass

Clustering(46) Variable = Del Peak 24(15q15.1) mutation analysis
D46V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(15Q15.1) MUTATED   14 14
  DEL PEAK 24(15Q15.1) WILD-TYPE 45 41
  DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE 
                            28                             86 
  DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE 
                            14                             41 
$`DEL PEAK 24(15Q15.1) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 
       16.47        15.25        45.70        48.79        35.80        39.19 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-EB-A24D TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A42Y 
       25.15         4.93         1.35         0.30         0.13         0.20 
TCGA-EB-A42Z TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A29L TCGA-EE-A29P 
        0.39         6.31         1.12        12.20         1.08        12.03 
TCGA-EE-A29Q TCGA-EE-A2A5 TCGA-ER-A19J TCGA-ER-A3ET TCGA-FW-A3TU TCGA-GN-A264 
        8.12         9.67         4.18         6.58         0.13        31.33 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26D TCGA-IH-A3EA 
       10.09        16.21        14.70        12.59 

$`DEL PEAK 24(15Q15.1) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       32.55        70.16        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3CE 
        8.38        21.14        11.41        30.87         6.35        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 
       24.00         9.30         5.39         4.01         2.86         3.88 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       51.12        10.03        13.68         9.99        44.52        36.69 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3Y6 TCGA-EB-A41A 
        0.53         0.43         1.28         1.18         0.53         0.26 
TCGA-EB-A41B TCGA-EE-A17X TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
        0.10        11.57         1.35         4.27        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        8.81         7.96        37.97        11.15        38.63         4.41 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       27.12         9.47         8.84         9.99         6.48         2.43 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-ER-A19D 
        8.09        11.31        25.28        23.90         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3PL 
       11.11        12.99        28.64        42.84        78.44         1.71 
TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR 
       12.10        10.09         5.95        72.16        24.00         8.81 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       53.82         3.22        10.78         6.41         0.20         1.02 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 TCGA-GN-A265 TCGA-GN-A268 TCGA-GN-A269 
       15.35        24.85        15.35        84.72        15.39         5.59 
TCGA-GN-A26A TCGA-GN-A26C 
       12.16        24.00 

  DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE 
                          0.13                           0.10 
  DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE 
                         48.79                          98.76 
  DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE 
                         9.880                         10.945 
[1] "0.1 - 48.8 (9.9)"  "0.1 - 98.8 (10.9)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 24(15Q15.1) WILD-TYPE"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 24(15Q15.1) MUTATED" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 24(15Q15.1) WILD-TYPE" "DEL PEAK 24(15Q15.1) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 24(15Q15.1) MUTATED"   "DEL PEAK 24(15Q15.1) MUTATED" 
[1] "hr=" "1.2"
D46V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 24(15Q15.1) MUTATED                    6             6
  DEL PEAK 24(15Q15.1) WILD-TYPE                 21            20
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 24(15Q15.1) MUTATED                                                                                         10
  DEL PEAK 24(15Q15.1) WILD-TYPE                                                                                       27
                                vv
clus                             REGIONAL LYMPH NODE
  DEL PEAK 24(15Q15.1) MUTATED                    26
  DEL PEAK 24(15Q15.1) WILD-TYPE                  86
D46V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 24(15Q15.1) MUTATED
  DISTANT METASTASIS                                                                                                  6
  PRIMARY TUMOR                                                                                                       6
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           10
  REGIONAL LYMPH NODE                                                                                                26
                                                                                          clus
vv                                                                                         DEL PEAK 24(15Q15.1) WILD-TYPE
  DISTANT METASTASIS                                                                                                   21
  PRIMARY TUMOR                                                                                                        20
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             27
  REGIONAL LYMPH NODE                                                                                                  86
D46V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(15Q15.1) MUTATED     22   26
  DEL PEAK 24(15Q15.1) WILD-TYPE   54  100
        clus
vv       DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE
  FEMALE                           22                             54
  MALE                             26                            100
D46V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(15Q15.1) MUTATED      0   48
  DEL PEAK 24(15Q15.1) WILD-TYPE    3  151
     clus
vv    DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE
  NO                             0                              3
  YES                           48                            151
                                vv
clus                              M0  M1 M1A M1B M1C
  DEL PEAK 24(15Q15.1) MUTATED    41   1   0   1   0
  DEL PEAK 24(15Q15.1) WILD-TYPE 135   1   2   1   3
D46V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 24(15Q15.1) MUTATED   26  0   2   4  0   1   4   1  6  0
  DEL PEAK 24(15Q15.1) WILD-TYPE 84  2   6  13  1   4  10   5 13  5
D46V7, multiclass
D46V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 24(15Q15.1) MUTATED             0       7        2        2        4
  DEL PEAK 24(15Q15.1) WILD-TYPE           4      10        8       13       16
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 24(15Q15.1) MUTATED           0         3         8         3
  DEL PEAK 24(15Q15.1) WILD-TYPE         9         7        15         6
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 24(15Q15.1) MUTATED            2          5          6        1
  DEL PEAK 24(15Q15.1) WILD-TYPE          5         16         21        6
D46V9, multiclass

Clustering(47) Variable = Del Peak 25(16p13.3) mutation analysis
D47V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 25(16P13.3) MUTATED    9 10
  DEL PEAK 25(16P13.3) WILD-TYPE 50 45
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                            19                             95 
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                            10                             45 
$`DEL PEAK 25(16P13.3) MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q9 TCGA-D3-A3CC TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-EB-A24D 
       32.55        22.55        45.70        35.80        13.68         1.35 
TCGA-EB-A3XC TCGA-EB-A3Y6 TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29L TCGA-EE-A29M 
        0.30         0.53         1.12        11.15         1.08        27.12 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A267 
        8.09        11.31         1.02         0.13        24.85        16.21 
TCGA-GN-A26D 
       14.70 

$`DEL PEAK 25(16P13.3) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 
       16.47        70.16        98.76        28.08        10.26         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE 
       21.14        11.41        30.87         6.35        15.25        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-D9-A3Z4 
       24.00         9.30         5.39         4.01         2.86         3.88 
TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 
       48.79        51.12        10.03        39.19         9.99        44.52 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       36.69        25.15         4.93        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A3HV 
        7.00        17.56        14.83         0.53         0.43         1.28 
TCGA-EB-A3XB TCGA-EB-A3XF TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y TCGA-EB-A42Z 
        1.18         0.13         0.26         0.10         0.20         0.39 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
        5.13         8.81         7.96        37.97        38.63         4.41 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
        9.47        12.03         8.12         8.84         9.99         6.48 
TCGA-EE-A29V TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
        2.43        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A 
        6.58         1.71        12.10        10.09         5.95        72.16 
TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC 
       24.00         8.81        53.82         3.22        10.78         6.41 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        15.35        15.35        31.33        84.72        10.09 
TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C TCGA-IH-A3EA 
       15.39         5.59        12.16        24.00        12.59 

  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                          0.13                           0.10 
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                         45.70                          98.76 
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                         11.31                          10.09 
[1] "0.1 - 45.7 (11.3)" "0.1 - 98.8 (10.1)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 25(16P13.3) MUTATED"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 25(16P13.3) MUTATED"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 25(16P13.3) MUTATED"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
[1] "hr=" "1.1"
D47V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 25(16P13.3) MUTATED                    5             4
  DEL PEAK 25(16P13.3) WILD-TYPE                 22            22
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 25(16P13.3) MUTATED                                                                                          4
  DEL PEAK 25(16P13.3) WILD-TYPE                                                                                       33
                                vv
clus                             REGIONAL LYMPH NODE
  DEL PEAK 25(16P13.3) MUTATED                    22
  DEL PEAK 25(16P13.3) WILD-TYPE                  90
D47V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 25(16P13.3) MUTATED
  DISTANT METASTASIS                                                                                                  5
  PRIMARY TUMOR                                                                                                       4
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            4
  REGIONAL LYMPH NODE                                                                                                22
                                                                                          clus
vv                                                                                         DEL PEAK 25(16P13.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                   22
  PRIMARY TUMOR                                                                                                        22
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             33
  REGIONAL LYMPH NODE                                                                                                  90
D47V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) MUTATED     18   17
  DEL PEAK 25(16P13.3) WILD-TYPE   58  109
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  FEMALE                           18                             58
  MALE                             17                            109
D47V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) MUTATED      0   35
  DEL PEAK 25(16P13.3) WILD-TYPE    3  164
     clus
vv    DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  NO                             0                              3
  YES                           35                            164
                                vv
clus                              M0  M1 M1A M1B M1C
  DEL PEAK 25(16P13.3) MUTATED    31   0   0   0   0
  DEL PEAK 25(16P13.3) WILD-TYPE 145   2   2   2   3
D47V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 25(16P13.3) MUTATED   21  0   2   3  1   2   2   0  1  0
  DEL PEAK 25(16P13.3) WILD-TYPE 89  2   6  14  0   3  12   6 18  5
D47V7, multiclass
D47V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 25(16P13.3) MUTATED             2       3        3        2        3
  DEL PEAK 25(16P13.3) WILD-TYPE           2      14        7       13       17
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 25(16P13.3) MUTATED           2         1         5         2
  DEL PEAK 25(16P13.3) WILD-TYPE         7         9        18         7
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 25(16P13.3) MUTATED            2          4          3        0
  DEL PEAK 25(16P13.3) WILD-TYPE          5         17         24        7
D47V9, multiclass

Clustering(48) Variable = Del Peak 26(16q12.1) mutation analysis
D48V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 26(16Q12.1) MUTATED   20 18
  DEL PEAK 26(16Q12.1) WILD-TYPE 39 37
  DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE 
                            38                             76 
  DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE 
                            18                             37 
$`DEL PEAK 26(16Q12.1) MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A2J6 TCGA-D3-A2JF TCGA-D3-A3CC TCGA-D9-A3Z3 
       32.55        98.76        10.26        30.87        45.70         2.86 
TCGA-D9-A3Z4 TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A3F5 TCGA-DA-A3F8 
        3.88        35.80        13.68         9.99        17.56        14.83 
TCGA-EB-A1NK TCGA-EB-A24D TCGA-EB-A3Y6 TCGA-EB-A41B TCGA-EE-A17Z TCGA-EE-A181 
        0.53         1.35         0.53         0.10         6.31         1.12 
TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
        4.27        37.97        11.15         1.08        27.12         9.47 
TCGA-EE-A29P TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A5 TCGA-ER-A19N TCGA-FS-A4F2 
       12.03         8.09        11.31         9.67        42.84         3.22 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A267 
        0.20         1.02         0.13        24.85        31.33        16.21 
TCGA-GN-A269 TCGA-GN-A26D 
        5.59        14.70 

$`DEL PEAK 26(16Q12.1) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 
       16.47        70.16        28.08        22.55         8.38        21.14 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO 
       11.41         6.35        15.25        13.32        24.00         9.30 
TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        5.39         4.01        48.79        51.12        10.03        39.19 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
       44.52        36.69        25.15         4.93        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-EB-A24C TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XC 
       19.36         7.00         0.43         1.28         1.18         0.30 
TCGA-EB-A3XF TCGA-EB-A41A TCGA-EB-A42Y TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A182 
        0.13         0.26         0.20         0.39        11.57         1.35 
TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29E 
       12.20        36.07         5.13         8.81         7.96        38.63 
TCGA-EE-A29H TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
        4.41         8.12         8.84         9.99         6.48         2.43 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       25.28        23.90         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A2OS 
       12.99        28.64        78.44         6.58         1.71        12.10 
TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 
       10.09         5.95        72.16        24.00         8.81        53.82 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-GN-A261 TCGA-GN-A263 TCGA-GN-A265 TCGA-GN-A266 
       10.78         6.41        15.35        15.35        84.72        10.09 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26C TCGA-IH-A3EA 
       15.39        12.16        24.00        12.59 

  DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE 
                          0.10                           0.13 
  DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE 
                         98.76                          84.72 
  DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE 
                        10.125                         10.945 
[1] "0.1 - 98.8 (10.1)" "0.1 - 84.7 (10.9)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
  "DEL PEAK 26(16Q12.1) MUTATED"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 26(16Q12.1) WILD-TYPE"   "DEL PEAK 26(16Q12.1) MUTATED" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 26(16Q12.1) WILD-TYPE" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 26(16Q12.1) MUTATED" "DEL PEAK 26(16Q12.1) WILD-TYPE" 
[1] "hr=" "1.1"
D48V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 26(16Q12.1) MUTATED                   11             8
  DEL PEAK 26(16Q12.1) WILD-TYPE                 16            18
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 26(16Q12.1) MUTATED                                                                                          9
  DEL PEAK 26(16Q12.1) WILD-TYPE                                                                                       28
                                vv
clus                             REGIONAL LYMPH NODE
  DEL PEAK 26(16Q12.1) MUTATED                    38
  DEL PEAK 26(16Q12.1) WILD-TYPE                  74
D48V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 26(16Q12.1) MUTATED
  DISTANT METASTASIS                                                                                                 11
  PRIMARY TUMOR                                                                                                       8
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            9
  REGIONAL LYMPH NODE                                                                                                38
                                                                                          clus
vv                                                                                         DEL PEAK 26(16Q12.1) WILD-TYPE
  DISTANT METASTASIS                                                                                                   16
  PRIMARY TUMOR                                                                                                        18
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             28
  REGIONAL LYMPH NODE                                                                                                  74
D48V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q12.1) MUTATED     28   38
  DEL PEAK 26(16Q12.1) WILD-TYPE   48   88
        clus
vv       DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE
  FEMALE                           28                             48
  MALE                             38                             88
D48V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q12.1) MUTATED      0   66
  DEL PEAK 26(16Q12.1) WILD-TYPE    3  133
     clus
vv    DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE
  NO                             0                              3
  YES                           66                            133
                                vv
clus                              M0  M1 M1A M1B M1C
  DEL PEAK 26(16Q12.1) MUTATED    57   1   0   1   0
  DEL PEAK 26(16Q12.1) WILD-TYPE 119   1   2   1   3
D48V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 26(16Q12.1) MUTATED   39  0   3   5  1   1   4   1  6  0
  DEL PEAK 26(16Q12.1) WILD-TYPE 71  2   5  12  0   4  10   5 13  5
D48V7, multiclass
D48V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 26(16Q12.1) MUTATED             2       3        4        5        8
  DEL PEAK 26(16Q12.1) WILD-TYPE           2      14        6       10       12
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 26(16Q12.1) MUTATED           1         3        11         2
  DEL PEAK 26(16Q12.1) WILD-TYPE         8         7        12         7
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 26(16Q12.1) MUTATED            2          8          7        1
  DEL PEAK 26(16Q12.1) WILD-TYPE          5         13         20        6
D48V9, multiclass

Clustering(49) Variable = Del Peak 27(16q24.3) mutation analysis
D49V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 27(16Q24.3) MUTATED   20 20
  DEL PEAK 27(16Q24.3) WILD-TYPE 39 35
  DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE 
                            40                             74 
  DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE 
                            20                             35 
$`DEL PEAK 27(16Q24.3) MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JF TCGA-D3-A3CC 
       32.55        98.76        22.55        10.26        30.87        45.70 
TCGA-D3-A3CE TCGA-D9-A3Z3 TCGA-D9-A3Z4 TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A1I4 
       13.32         2.86         3.88        35.80        13.68         9.99 
TCGA-DA-A3F8 TCGA-EB-A24D TCGA-EB-A3XF TCGA-EB-A3Y6 TCGA-EB-A41B TCGA-EB-A42Z 
       14.83         1.35         0.13         0.53         0.10         0.39 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A29D TCGA-EE-A29H 
        6.31         1.12        12.20         4.27        11.15         4.41 
TCGA-EE-A29M TCGA-EE-A29P TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A5 TCGA-ER-A19F 
       27.12        12.03         8.09        11.31         9.67        11.11 
TCGA-ER-A19N TCGA-ER-A3PL TCGA-FS-A4F2 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A262 
       42.84         1.71         3.22         1.02         0.13        24.85 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26D 
       16.21        15.39         5.59        14.70 

$`DEL PEAK 27(16Q24.3) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD 
       16.47        70.16        28.08         8.38        21.14        11.41 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
        6.35        15.25        24.00         9.30         5.39         4.01 
TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I5 TCGA-DA-A1I7 
       48.79        51.12        10.03        39.19        44.52        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       25.15         4.93        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XC 
       17.56         0.53         0.43         1.28         1.18         0.30 
TCGA-EB-A41A TCGA-EB-A42Y TCGA-EE-A17X TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A20F 
        0.26         0.20        11.57         1.35        36.07         5.13 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29N 
        8.81         7.96        37.97        38.63         1.08         9.47 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A1 
        8.12         8.84         9.99         6.48         2.43        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
       23.90         8.94         3.52         4.18        12.99        28.64 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN TCGA-FR-A44A 
       78.44         6.58        12.10        10.09         5.95        72.16 
TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F0 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 
       24.00         8.81        53.82        10.78         6.41         0.20 
TCGA-GN-A261 TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A26A 
       15.35        15.35        31.33        84.72        10.09        12.16 
TCGA-GN-A26C TCGA-IH-A3EA 
       24.00        12.59 

  DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE 
                           0.1                            0.2 
  DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE 
                         98.76                          84.72 
  DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE 
                        10.685                         10.435 
[1] "0.1 - 98.8 (10.7)" "0.2 - 84.7 (10.4)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 27(16Q24.3) MUTATED"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 27(16Q24.3) MUTATED"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
  "DEL PEAK 27(16Q24.3) MUTATED"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 27(16Q24.3) MUTATED"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 27(16Q24.3) MUTATED"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 27(16Q24.3) MUTATED"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
  "DEL PEAK 27(16Q24.3) MUTATED"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 27(16Q24.3) MUTATED"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 27(16Q24.3) MUTATED"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
  "DEL PEAK 27(16Q24.3) MUTATED"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A182 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
  "DEL PEAK 27(16Q24.3) MUTATED"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 27(16Q24.3) WILD-TYPE"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 27(16Q24.3) MUTATED"   "DEL PEAK 27(16Q24.3) MUTATED" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 27(16Q24.3) WILD-TYPE" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
  "DEL PEAK 27(16Q24.3) MUTATED" "DEL PEAK 27(16Q24.3) WILD-TYPE" 
[1] "hr=" "1.3"
D49V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 27(16Q24.3) MUTATED                   10             9
  DEL PEAK 27(16Q24.3) WILD-TYPE                 17            17
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 27(16Q24.3) MUTATED                                                                                         10
  DEL PEAK 27(16Q24.3) WILD-TYPE                                                                                       27
                                vv
clus                             REGIONAL LYMPH NODE
  DEL PEAK 27(16Q24.3) MUTATED                    42
  DEL PEAK 27(16Q24.3) WILD-TYPE                  70
D49V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 27(16Q24.3) MUTATED
  DISTANT METASTASIS                                                                                                 10
  PRIMARY TUMOR                                                                                                       9
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                           10
  REGIONAL LYMPH NODE                                                                                                42
                                                                                          clus
vv                                                                                         DEL PEAK 27(16Q24.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                   17
  PRIMARY TUMOR                                                                                                        17
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             27
  REGIONAL LYMPH NODE                                                                                                  70
D49V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(16Q24.3) MUTATED     30   41
  DEL PEAK 27(16Q24.3) WILD-TYPE   46   85
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  FEMALE                           30                             46
  MALE                             41                             85
D49V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(16Q24.3) MUTATED      0   71
  DEL PEAK 27(16Q24.3) WILD-TYPE    3  128
     clus
vv    DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  NO                             0                              3
  YES                           71                            128
                                vv
clus                              M0  M1 M1A M1B M1C
  DEL PEAK 27(16Q24.3) MUTATED    63   0   1   1   0
  DEL PEAK 27(16Q24.3) WILD-TYPE 113   2   1   1   3
D49V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 27(16Q24.3) MUTATED   43  0   3   8  1   3   4   0  4  0
  DEL PEAK 27(16Q24.3) WILD-TYPE 67  2   5   9  0   2  10   6 15  5
D49V7, multiclass
D49V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 27(16Q24.3) MUTATED             2       5        5        4        7
  DEL PEAK 27(16Q24.3) WILD-TYPE           2      12        5       11       13
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 27(16Q24.3) MUTATED           1         6        11         3
  DEL PEAK 27(16Q24.3) WILD-TYPE         8         4        12         6
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 27(16Q24.3) MUTATED            2          9          6        1
  DEL PEAK 27(16Q24.3) WILD-TYPE          5         12         21        6
D49V9, multiclass

Clustering(50) Variable = Del Peak 28(19p13.3) mutation analysis
D50V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 28(19P13.3) MUTATED   18 19
  DEL PEAK 28(19P13.3) WILD-TYPE 41 36
  DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE 
                            37                             77 
  DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE 
                            19                             36 
$`DEL PEAK 28(19P13.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D9-A3Z3 TCGA-DA-A1HV 
       16.47        22.55        10.26        11.41         2.86        48.79 
TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
       35.80        10.03        44.52        36.69        25.15         4.93 
TCGA-DA-A1IC TCGA-DA-A3F5 TCGA-EB-A1NK TCGA-EB-A24D TCGA-EB-A3XB TCGA-EB-A3XC 
        6.64        17.56         0.53         1.35         1.18         0.30 
TCGA-EB-A3Y6 TCGA-EB-A42Z TCGA-EE-A17X TCGA-EE-A185 TCGA-EE-A20H TCGA-EE-A29C 
        0.53         0.39        11.57         4.27         8.81        37.97 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       11.15         4.41         9.47         2.43         8.09        11.31 
TCGA-EE-A2A6 TCGA-ER-A19M TCGA-FR-A3YN TCGA-FR-A44A TCGA-FW-A3TU TCGA-GN-A262 
        8.94        28.64         5.95        72.16         0.13        24.85 
TCGA-GN-A268 
       15.39 

$`DEL PEAK 28(19P13.3) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 
       32.55        70.16        98.76        28.08         8.38        21.14 
TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF 
       30.87         6.35        15.25        45.70        13.32        24.00 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z4 TCGA-DA-A1HY TCGA-DA-A1I1 
        9.30         5.39         4.01         3.88        51.12        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 
       13.68         9.99        22.36        19.36         7.00        14.83 
TCGA-EB-A24C TCGA-EB-A3HV TCGA-EB-A3XF TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Y 
        0.43         1.28         0.13         0.26         0.10         0.20 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F 
        6.31         1.12         1.35        12.20        36.07         5.13 
TCGA-EE-A29A TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29P TCGA-EE-A29Q 
        7.96        38.63         1.08        27.12        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        8.84         9.99         6.48        25.28        23.90         9.67 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
        3.52        11.11         4.18        12.99        42.84        78.44 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FS-A1ZN TCGA-FS-A1ZR 
        6.58         1.71        12.10        10.09        24.00         8.81 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3I3 TCGA-FW-A3R5 
       53.82         3.22        10.78         6.41         0.20         1.02 
TCGA-GN-A261 TCGA-GN-A263 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       15.35        15.35        31.33        84.72        10.09        16.21 
TCGA-GN-A269 TCGA-GN-A26A TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
        5.59        12.16        24.00        14.70        12.59 

  DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE 
                          0.13                           0.10 
  DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE 
                         72.16                          98.76 
  DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE 
                         10.03                          11.11 
[1] "0.1 - 72.2 (10.0)" "0.1 - 98.8 (11.1)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
[1] "hr=" "1.2"
D50V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 28(19P13.3) MUTATED                    9             7
  DEL PEAK 28(19P13.3) WILD-TYPE                 18            19
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 28(19P13.3) MUTATED                                                                                          7
  DEL PEAK 28(19P13.3) WILD-TYPE                                                                                       30
                                vv
clus                             REGIONAL LYMPH NODE
  DEL PEAK 28(19P13.3) MUTATED                    38
  DEL PEAK 28(19P13.3) WILD-TYPE                  74
D50V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 28(19P13.3) MUTATED
  DISTANT METASTASIS                                                                                                  9
  PRIMARY TUMOR                                                                                                       7
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            7
  REGIONAL LYMPH NODE                                                                                                38
                                                                                          clus
vv                                                                                         DEL PEAK 28(19P13.3) WILD-TYPE
  DISTANT METASTASIS                                                                                                   18
  PRIMARY TUMOR                                                                                                        19
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             30
  REGIONAL LYMPH NODE                                                                                                  74
D50V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(19P13.3) MUTATED     25   36
  DEL PEAK 28(19P13.3) WILD-TYPE   51   90
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  FEMALE                           25                             51
  MALE                             36                             90
D50V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(19P13.3) MUTATED      1   60
  DEL PEAK 28(19P13.3) WILD-TYPE    2  139
     clus
vv    DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  NO                             1                              2
  YES                           60                            139
                                vv
clus                              M0  M1 M1A M1B M1C
  DEL PEAK 28(19P13.3) MUTATED    51   0   1   1   2
  DEL PEAK 28(19P13.3) WILD-TYPE 125   2   1   1   1
D50V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 28(19P13.3) MUTATED   29  0   2   8  0   2   5   2  6  2
  DEL PEAK 28(19P13.3) WILD-TYPE 81  2   6   9  1   3   9   4 13  3
D50V7, multiclass
D50V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 28(19P13.3) MUTATED             2       3        4        6        3
  DEL PEAK 28(19P13.3) WILD-TYPE           2      14        6        9       17
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 28(19P13.3) MUTATED           2         2         6         2
  DEL PEAK 28(19P13.3) WILD-TYPE         7         8        17         7
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 28(19P13.3) MUTATED            2          9          9        2
  DEL PEAK 28(19P13.3) WILD-TYPE          5         12         18        5
D50V9, multiclass

Clustering(51) Variable = Del Peak 29(22q12.1) mutation analysis
D51V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 29(22Q12.1) MUTATED   11  4
  DEL PEAK 29(22Q12.1) WILD-TYPE 48 51
  DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE 
                            15                             99 
  DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE 
                             4                             51 
$`DEL PEAK 29(22Q12.1) MUTATED`
TCGA-D3-A1Q8 TCGA-D3-A2JF TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1I2 TCGA-EB-A3Y6 
       28.08        30.87         4.01         2.86        13.68         0.53 
TCGA-EB-A41A TCGA-EB-A41B TCGA-EB-A42Z TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A2A6 
        0.26         0.10         0.39        37.97        38.63         8.94 
TCGA-ER-A19D TCGA-FS-A4F0 TCGA-GN-A266 
        3.52        53.82        10.09 

$`DEL PEAK 29(22Q12.1) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        70.16        98.76        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
        8.38        21.14        11.41         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z4 TCGA-DA-A1HV 
       13.32        24.00         9.30         5.39         3.88        48.79 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 
       35.80        51.12        10.03        39.19         9.99        44.52 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       36.69        25.15         4.93        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A1NK TCGA-EB-A24C TCGA-EB-A24D 
        7.00        17.56        14.83         0.53         0.43         1.35 
TCGA-EB-A3HV TCGA-EB-A3XB TCGA-EB-A3XC TCGA-EB-A3XF TCGA-EB-A42Y TCGA-EE-A17X 
        1.28         1.18         0.30         0.13         0.20        11.57 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        6.31         1.12         1.35        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L 
        5.13         8.81         7.96        11.15         4.41         1.08 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       27.12         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        6.48         2.43         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        9.67        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A2OS TCGA-FR-A3R1 TCGA-FR-A3YN 
       78.44         6.58         1.71        12.10        10.09         5.95 
TCGA-FR-A44A TCGA-FS-A1ZN TCGA-FS-A1ZR TCGA-FS-A4F2 TCGA-FS-A4F9 TCGA-FS-A4FC 
       72.16        24.00         8.81         3.22        10.78         6.41 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A263 
        0.20         1.02         0.13        15.35        24.85        15.35 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A269 TCGA-GN-A26A 
       31.33        84.72        16.21        15.39         5.59        12.16 
TCGA-GN-A26C TCGA-GN-A26D TCGA-IH-A3EA 
       24.00        14.70        12.59 

  DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE 
                          0.10                           0.13 
  DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE 
                         53.82                          98.76 
  DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE 
                          8.94                          11.11 
[1] "0.1 - 53.8 (8.9)"  "0.1 - 98.8 (11.1)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
  "DEL PEAK 29(22Q12.1) MUTATED"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 29(22Q12.1) WILD-TYPE"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
  "DEL PEAK 29(22Q12.1) MUTATED"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 29(22Q12.1) WILD-TYPE"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "DEL PEAK 29(22Q12.1) MUTATED"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
  "DEL PEAK 29(22Q12.1) MUTATED"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 29(22Q12.1) WILD-TYPE"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
  "DEL PEAK 29(22Q12.1) MUTATED"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 29(22Q12.1) WILD-TYPE"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "DEL PEAK 29(22Q12.1) MUTATED"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A1Q6                     TCGA-D3-A1Q7 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A1Q8                     TCGA-D3-A1Q9 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A2J6                     TCGA-D3-A2J8 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A2J9                     TCGA-D3-A2JD 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A2JF                     TCGA-D3-A2JK 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CC 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A3CE                     TCGA-D3-A3CF 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D3-A3MO                     TCGA-D3-A3MV 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
  "DEL PEAK 29(22Q12.1) MUTATED"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-D9-A3Z4                     TCGA-DA-A1HV 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1HW                     TCGA-DA-A1HY 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I0                     TCGA-DA-A1I1 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I2                     TCGA-DA-A1I4 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I5                     TCGA-DA-A1I7 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1I8                     TCGA-DA-A1IA 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A1IC 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F2                     TCGA-DA-A3F3 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EB-A1NK                     TCGA-EB-A24C 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EB-A24D                     TCGA-EB-A3HV 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EB-A3XB                     TCGA-EB-A3XC 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EB-A3XF                     TCGA-EB-A3Y6 
"DEL PEAK 29(22Q12.1) WILD-TYPE"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-EB-A41A                     TCGA-EB-A41B 
  "DEL PEAK 29(22Q12.1) MUTATED"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-EB-A42Y                     TCGA-EB-A42Z 
"DEL PEAK 29(22Q12.1) WILD-TYPE"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A182 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A183                     TCGA-EE-A185 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A20B                     TCGA-EE-A20F 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A20H                     TCGA-EE-A29A 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29M 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29N                     TCGA-EE-A29P 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29Q                     TCGA-EE-A29R 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A29V                     TCGA-EE-A29X 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A0                     TCGA-EE-A2A1 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A2                     TCGA-EE-A2A5 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-ER-A19D 
  "DEL PEAK 29(22Q12.1) MUTATED"   "DEL PEAK 29(22Q12.1) MUTATED" 
                    TCGA-ER-A19F                     TCGA-ER-A19J 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-ER-A19L                     TCGA-ER-A19M 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-ER-A19N                     TCGA-ER-A1A1 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-ER-A3ET                     TCGA-ER-A3PL 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FR-A2OS                     TCGA-FR-A3R1 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FR-A3YN                     TCGA-FR-A44A 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZN                     TCGA-FS-A1ZR 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FS-A4F0                     TCGA-FS-A4F2 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FS-A4F9                     TCGA-FS-A4FC 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FW-A3I3                     TCGA-FW-A3R5 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-FW-A3TU                     TCGA-GN-A261 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A262                     TCGA-GN-A263 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A264                     TCGA-GN-A265 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A266                     TCGA-GN-A267 
  "DEL PEAK 29(22Q12.1) MUTATED" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A269 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A26A                     TCGA-GN-A26C 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
                    TCGA-GN-A26D                     TCGA-IH-A3EA 
"DEL PEAK 29(22Q12.1) WILD-TYPE" "DEL PEAK 29(22Q12.1) WILD-TYPE" 
[1] "hr=" "1.8"
D51V2, continuous
                                vv
clus                             DISTANT METASTASIS PRIMARY TUMOR
  DEL PEAK 29(22Q12.1) MUTATED                    4             4
  DEL PEAK 29(22Q12.1) WILD-TYPE                 23            22
                                vv
clus                             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEL PEAK 29(22Q12.1) MUTATED                                                                                          6
  DEL PEAK 29(22Q12.1) WILD-TYPE                                                                                       31
                                vv
clus                             REGIONAL LYMPH NODE
  DEL PEAK 29(22Q12.1) MUTATED                    14
  DEL PEAK 29(22Q12.1) WILD-TYPE                  98
D51V3, multiclass
                                                                                          clus
vv                                                                                         DEL PEAK 29(22Q12.1) MUTATED
  DISTANT METASTASIS                                                                                                  4
  PRIMARY TUMOR                                                                                                       4
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                            6
  REGIONAL LYMPH NODE                                                                                                14
                                                                                          clus
vv                                                                                         DEL PEAK 29(22Q12.1) WILD-TYPE
  DISTANT METASTASIS                                                                                                   23
  PRIMARY TUMOR                                                                                                        22
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                             31
  REGIONAL LYMPH NODE                                                                                                  98
D51V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(22Q12.1) MUTATED     11   17
  DEL PEAK 29(22Q12.1) WILD-TYPE   65  109
        clus
vv       DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE
  FEMALE                           11                             65
  MALE                             17                            109
D51V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(22Q12.1) MUTATED      0   28
  DEL PEAK 29(22Q12.1) WILD-TYPE    3  171
     clus
vv    DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE
  NO                             0                              3
  YES                           28                            171
                                vv
clus                              M0  M1 M1A M1B M1C
  DEL PEAK 29(22Q12.1) MUTATED    26   0   0   1   0
  DEL PEAK 29(22Q12.1) WILD-TYPE 150   2   2   1   3
D51V6, multiclass
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 29(22Q12.1) MUTATED   17  0   1   4  0   0   2   0  2  1
  DEL PEAK 29(22Q12.1) WILD-TYPE 93  2   7  13  1   5  12   6 17  4
D51V7, multiclass
D51V8, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 29(22Q12.1) MUTATED             0       5        2        3        0
  DEL PEAK 29(22Q12.1) WILD-TYPE           4      12        8       12       20
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 29(22Q12.1) MUTATED           1         2         4         0
  DEL PEAK 29(22Q12.1) WILD-TYPE         8         8        19         9
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 29(22Q12.1) MUTATED            0          3          4        1
  DEL PEAK 29(22Q12.1) WILD-TYPE          7         18         23        6
D51V9, multiclass
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
               "PRIMARY.SITE.OF.DISEASE" 
                                      V4 
                                "GENDER" 
                                      V5 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V6 
                    "DISTANT.METASTASIS" 
                                      V7 
                 "LYMPH.NODE.METASTASIS" 
                                      V8 
                       "TUMOR.STAGECODE" 
                                      V9 
                 "NEOPLASM.DISEASESTAGE" 
> q(save="no")
