
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/399353/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/SKCM-All_Samples/3161161/1.GDAC_mergedClustering.Finished/SKCM-All_Samples.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SKCM-All_Samples", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"                  "-oT=SKCM-All_Samples"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=316, in cluster file=288, common to both=288
[1]  51 288
[1] "Amp Peak  1(1p12) mutation analysis"
[1] 3
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         84                         204 
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         84                         204 
[1] "Amp Peak  2(1q44) mutation analysis"
[1] 3
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                        149                         139 
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                        149                         139 
[1] "Amp Peak  3(3p13) mutation analysis"
[1] 3
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                         71                         217 
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                         71                         217 
[1] "Amp Peak  4(4q12) mutation analysis"
[1] 3
  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                         50                         238 
  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                         50                         238 
[1] "Amp Peak  5(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            82                            206 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            82                            206 
[1] "Amp Peak  6(5q35.3) mutation analysis"
[1] 3
  AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE 
                           42                           246 
  AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE 
                           42                           246 
[1] "Amp Peak  7(6p25.1) mutation analysis"
[1] 3
  AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE 
                          157                           131 
  AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE 
                          157                           131 
[1] "Amp Peak  8(6q12) mutation analysis"
[1] 3
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         61                         227 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         61                         227 
[1] "Amp Peak  9(7p22.3) mutation analysis"
[1] 3
  AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE 
                          153                           135 
  AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE 
                          153                           135 
[1] "Amp Peak 10(7q34) mutation analysis"
[1] 3
  AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE 
                        172                         116 
  AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE 
                        172                         116 
[1] "Amp Peak 11(8q11.22) mutation analysis"
[1] 3
  AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE 
                           120                            168 
  AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE 
                           120                            168 
[1] "Amp Peak 12(8q24.3) mutation analysis"
[1] 3
  AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE 
                          139                           149 
  AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE 
                          139                           149 
[1] "Amp Peak 13(9p24.1) mutation analysis"
[1] 3
  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                           22                           266 
  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                           22                           266 
[1] "Amp Peak 14(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                            51                            237 
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                            51                            237 
[1] "Amp Peak 15(11q13.4) mutation analysis"
[1] 3
  AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE 
                            48                            240 
  AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE 
                            48                            240 
[1] "Amp Peak 16(12q15) mutation analysis"
[1] 3
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          43                          245 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          43                          245 
[1] "Amp Peak 17(13q31.3) mutation analysis"
[1] 3
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                            78                            210 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                            78                            210 
[1] "Amp Peak 18(15q24.3) mutation analysis"
[1] 3
  AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE 
                            86                            202 
  AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE 
                            86                            202 
[1] "Amp Peak 19(17q25.3) mutation analysis"
[1] 3
  AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE 
                            93                            195 
  AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE 
                            93                            195 
[1] "Amp Peak 20(19p13.2) mutation analysis"
[1] 3
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            57                            231 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            57                            231 
[1] "Amp Peak 21(20q13.2) mutation analysis"
[1] 3
  AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE 
                           148                            140 
  AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE 
                           148                            140 
[1] "Amp Peak 22(22q13.2) mutation analysis"
[1] 3
  AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE 
                           114                            174 
  AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE 
                           114                            174 
[1] "Del Peak  1(1p36.31) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            70                            218 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            70                            218 
[1] "Del Peak  2(1p22.1) mutation analysis"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           73                           215 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           73                           215 
[1] "Del Peak  3(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           70                           218 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           70                           218 
[1] "Del Peak  4(3p26.1) mutation analysis"
[1] 3
  DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE 
                           51                           237 
  DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE 
                           51                           237 
[1] "Del Peak  5(3q23) mutation analysis"
[1] 3
  DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE 
                         40                         248 
  DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE 
                         40                         248 
[1] "Del Peak  6(4p16.3) mutation analysis"
[1] 3
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                           64                           224 
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                           64                           224 
[1] "Del Peak  7(4q34.3) mutation analysis"
[1] 3
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           80                           208 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           80                           208 
[1] "Del Peak  8(5q11.2) mutation analysis"
[1] 3
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                           76                           212 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                           76                           212 
[1] "Del Peak  9(5q31.3) mutation analysis"
[1] 3
  DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE 
                          104                           184 
  DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE 
                          104                           184 
[1] "Del Peak 10(6q16.3) mutation analysis"
[1] 3
  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                          160                           128 
  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                          160                           128 
[1] "Del Peak 11(6q26) mutation analysis"
[1] 3
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                        173                         115 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                        173                         115 
[1] "Del Peak 12(6q27) mutation analysis"
[1] 3
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                        171                         117 
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                        171                         117 
[1] "Del Peak 13(8p23.3) mutation analysis"
[1] 3
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                           75                           213 
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                           75                           213 
[1] "Del Peak 14(9p23) mutation analysis"
[1] 3
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                        199                          89 
  DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE 
                        199                          89 
[1] "Del Peak 15(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                          223                            65 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                          223                            65 
[1] "Del Peak 16(10p15.3) mutation analysis"
[1] 3
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                           161                            127 
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                           161                            127 
[1] "Del Peak 17(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                            178                             110 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                            178                             110 
[1] "Del Peak 18(10q26.3) mutation analysis"
[1] 3
  DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE 
                           180                            108 
  DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE 
                           180                            108 
[1] "Del Peak 19(11q23.3) mutation analysis"
[1] 3
  DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE 
                           154                            134 
  DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE 
                           154                            134 
[1] "Del Peak 20(12q24.33) mutation analysis"
[1] 3
  DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE 
                             68                             220 
  DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE 
                             68                             220 
[1] "Del Peak 21(13q34) mutation analysis"
[1] 3
  DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE 
                          64                          224 
  DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE 
                          64                          224 
[1] "Del Peak 22(14q32.2) mutation analysis"
[1] 3
  DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE 
                            96                            192 
  DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE 
                            96                            192 
[1] "Del Peak 23(15q13.3) mutation analysis"
[1] 3
  DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE 
                            61                            227 
  DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE 
                            61                            227 
[1] "Del Peak 24(15q15.1) mutation analysis"
[1] 3
  DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE 
                            67                            221 
  DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE 
                            67                            221 
[1] "Del Peak 25(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                            52                            236 
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                            52                            236 
[1] "Del Peak 26(16q12.1) mutation analysis"
[1] 3
  DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE 
                            96                            192 
  DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE 
                            96                            192 
[1] "Del Peak 27(16q24.3) mutation analysis"
[1] 3
  DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE 
                           106                            182 
  DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE 
                           106                            182 
[1] "Del Peak 28(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE 
                            83                            205 
  DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE 
                            83                            205 
[1] "Del Peak 29(22q12.1) mutation analysis"
[1] 3
  DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE 
                            45                            243 
  DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE 
                            45                            243 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 8 rows and 288 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 288 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p12) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        15                          39
  CLUS_2                        30                          65
  CLUS_3                        11                          57
  CLUS_4                        28                          43
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        22                          49
  CLUS_2                        31                          74
  CLUS_3                        31                          81
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        19                          54
  CLUS_2                        13                          29
  CLUS_3                        16                          31
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        16                          37
  CLUS_2                        19                          52
  CLUS_3                        13                          25
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                         9                          35
  CLUS_2                        28                          53
  CLUS_3                        24                          61
  CLUS_4                        21                          51
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        25                          54
  CLUS_2                        32                          83
  CLUS_3                        25                          63
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        35                          87
  CLUS_2                        26                          62
  CLUS_3                        20                          52
D1V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  1(1P12) MUTATED     50   31
  AMP PEAK  1(1P12) WILD-TYPE  126   75
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        50                         126
  CLUS_2                        31                          75

Clustering(2) Variable = Amp Peak  2(1q44) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        20                          34
  CLUS_2                        59                          36
  CLUS_3                        24                          44
  CLUS_4                        46                          25
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        46                          25
  CLUS_2                        50                          55
  CLUS_3                        53                          59
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        39                          34
  CLUS_2                        19                          23
  CLUS_3                        25                          22
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        26                          27
  CLUS_2                        38                          33
  CLUS_3                        19                          19
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        17                          27
  CLUS_2                        47                          34
  CLUS_3                        48                          37
  CLUS_4                        34                          38
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        43                          36
  CLUS_2                        56                          59
  CLUS_3                        47                          41
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        67                          55
  CLUS_2                        39                          49
  CLUS_3                        41                          31
D2V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q44) MUTATED     92   55
  AMP PEAK  2(1Q44) WILD-TYPE   84   51
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        92                          84
  CLUS_2                        55                          51

Clustering(3) Variable = Amp Peak  3(3p13) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                        14                          40
  CLUS_2                        20                          75
  CLUS_3                        14                          54
  CLUS_4                        23                          48
D3V2, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                        16                          55
  CLUS_2                        22                          83
  CLUS_3                        33                          79
D3V3, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                        15                          58
  CLUS_2                        11                          31
  CLUS_3                        17                          30
D3V4, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                        10                          43
  CLUS_2                        22                          49
  CLUS_3                        11                          27
D3V5, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         6                          38
  CLUS_2                        20                          61
  CLUS_3                        21                          64
  CLUS_4                        22                          50
D3V6, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                        15                          64
  CLUS_2                        31                          84
  CLUS_3                        23                          65
D3V7, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                        28                          94
  CLUS_2                        24                          64
  CLUS_3                        17                          55
D3V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  3(3P13) MUTATED     44   25
  AMP PEAK  3(3P13) WILD-TYPE  132   81
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                        44                         132
  CLUS_2                        25                          81

Clustering(4) Variable = Amp Peak  4(4q12) mutation analysis
D4V1, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         5                          49
  CLUS_2                        25                          70
  CLUS_3                         7                          61
  CLUS_4                        13                          58
D4V2, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        14                          57
  CLUS_2                        20                          85
  CLUS_3                        16                          96
D4V3, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        13                          60
  CLUS_2                         9                          33
  CLUS_3                         7                          40
D4V4, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         7                          46
  CLUS_2                        18                          53
  CLUS_3                         4                          34
D4V5, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         5                          39
  CLUS_2                        18                          63
  CLUS_3                        13                          72
  CLUS_4                        12                          60
D4V6, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        14                          65
  CLUS_2                        20                          95
  CLUS_3                        14                          74
D4V7, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        26                          96
  CLUS_2                        12                          76
  CLUS_3                        12                          60
D4V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(4Q12) MUTATED     39   11
  AMP PEAK  4(4Q12) WILD-TYPE  137   95
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        39                         137
  CLUS_2                        11                          95

Clustering(5) Variable = Amp Peak  5(5p15.33) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           14                             40
  CLUS_2                           37                             58
  CLUS_3                            6                             62
  CLUS_4                           25                             46
D5V2, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           24                             47
  CLUS_2                           32                             73
  CLUS_3                           26                             86
D5V3, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           20                             53
  CLUS_2                           15                             27
  CLUS_3                           10                             37
D5V4, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           14                             39
  CLUS_2                           22                             49
  CLUS_3                            9                             29
D5V5, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           14                             30
  CLUS_2                           27                             54
  CLUS_3                           25                             60
  CLUS_4                           16                             56
D5V6, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           24                             55
  CLUS_2                           33                             82
  CLUS_3                           25                             63
D5V7, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           40                             82
  CLUS_2                           17                             71
  CLUS_3                           23                             49
D5V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(5P15.33) MUTATED     54   26
  AMP PEAK  5(5P15.33) WILD-TYPE  122   80
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           54                            122
  CLUS_2                           26                             80

Clustering(6) Variable = Amp Peak  6(5q35.3) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           2                            52
  CLUS_2                          23                            72
  CLUS_3                           3                            65
  CLUS_4                          14                            57
D6V2, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                          23                            48
  CLUS_2                          12                            93
  CLUS_3                           7                           105
D6V3, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           8                            65
  CLUS_2                           7                            35
  CLUS_3                           6                            41
D6V4, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           6                            47
  CLUS_2                          11                            60
  CLUS_3                           4                            34
D6V5, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           5                            39
  CLUS_2                          17                            64
  CLUS_3                          13                            72
  CLUS_4                           6                            66
D6V6, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                          13                            66
  CLUS_2                          13                           102
  CLUS_3                          15                            73
D6V7, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                          24                            98
  CLUS_2                          10                            78
  CLUS_3                           7                            65
D6V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(5Q35.3) MUTATED     30   11
  AMP PEAK  6(5Q35.3) WILD-TYPE  146   95
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                          30                           146
  CLUS_2                          11                            95

Clustering(7) Variable = Amp Peak  7(6p25.1) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE
  CLUS_1                          19                            35
  CLUS_2                          76                            19
  CLUS_3                          29                            39
  CLUS_4                          33                            38
D7V2, multiclass
        clus
vv       AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE
  CLUS_1                          46                            25
  CLUS_2                          65                            40
  CLUS_3                          46                            66
D7V3, multiclass
        clus
vv       AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE
  CLUS_1                          47                            26
  CLUS_2                          25                            17
  CLUS_3                          19                            28
D7V4, multiclass
        clus
vv       AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE
  CLUS_1                          32                            21
  CLUS_2                          42                            29
  CLUS_3                          17                            21
D7V5, multiclass
        clus
vv       AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE
  CLUS_1                          21                            23
  CLUS_2                          53                            28
  CLUS_3                          43                            42
  CLUS_4                          36                            36
D7V6, multiclass
        clus
vv       AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE
  CLUS_1                          49                            30
  CLUS_2                          62                            53
  CLUS_3                          42                            46
D7V7, multiclass
        clus
vv       AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE
  CLUS_1                          81                            41
  CLUS_2                          35                            53
  CLUS_3                          37                            35
D7V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(6P25.1) MUTATED    113   40
  AMP PEAK  7(6P25.1) WILD-TYPE   63   66
        clus
vv       AMP PEAK  7(6P25.1) MUTATED AMP PEAK  7(6P25.1) WILD-TYPE
  CLUS_1                         113                            63
  CLUS_2                          40                            66

Clustering(8) Variable = Amp Peak  8(6q12) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        11                          43
  CLUS_2                        25                          70
  CLUS_3                        15                          53
  CLUS_4                        10                          61
D8V2, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        14                          57
  CLUS_2                        22                          83
  CLUS_3                        25                          87
D8V3, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        20                          53
  CLUS_2                         8                          34
  CLUS_3                         7                          40
D8V4, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        14                          39
  CLUS_2                        15                          56
  CLUS_3                         6                          32
D8V5, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                         2                          42
  CLUS_2                        17                          64
  CLUS_3                        15                          70
  CLUS_4                        24                          48
D8V6, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        12                          67
  CLUS_2                        31                          84
  CLUS_3                        15                          73
D8V7, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        28                          94
  CLUS_2                        15                          73
  CLUS_3                        17                          55
D8V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6Q12) MUTATED     42   18
  AMP PEAK  8(6Q12) WILD-TYPE  134   88
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        42                         134
  CLUS_2                        18                          88

Clustering(9) Variable = Amp Peak  9(7p22.3) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE
  CLUS_1                          25                            29
  CLUS_2                          45                            50
  CLUS_3                          23                            45
  CLUS_4                          60                            11
D9V2, multiclass
        clus
vv       AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE
  CLUS_1                          36                            35
  CLUS_2                          61                            44
  CLUS_3                          56                            56
D9V3, multiclass
        clus
vv       AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE
  CLUS_1                          41                            32
  CLUS_2                          21                            21
  CLUS_3                          28                            19
D9V4, multiclass
        clus
vv       AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE
  CLUS_1                          30                            23
  CLUS_2                          36                            35
  CLUS_3                          24                            14
D9V5, multiclass
        clus
vv       AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE
  CLUS_1                          20                            24
  CLUS_2                          42                            39
  CLUS_3                          54                            31
  CLUS_4                          35                            37
D9V6, multiclass
        clus
vv       AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE
  CLUS_1                          40                            39
  CLUS_2                          56                            59
  CLUS_3                          55                            33
D9V7, multiclass
        clus
vv       AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE
  CLUS_1                          63                            59
  CLUS_2                          47                            41
  CLUS_3                          39                            33
D9V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(7P22.3) MUTATED     88   61
  AMP PEAK  9(7P22.3) WILD-TYPE   88   45
        clus
vv       AMP PEAK  9(7P22.3) MUTATED AMP PEAK  9(7P22.3) WILD-TYPE
  CLUS_1                          88                            88
  CLUS_2                          61                            45

Clustering(10) Variable = Amp Peak 10(7q34) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE
  CLUS_1                        24                          30
  CLUS_2                        52                          43
  CLUS_3                        34                          34
  CLUS_4                        62                           9
D10V2, multiclass
        clus
vv       AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE
  CLUS_1                        34                          37
  CLUS_2                        67                          38
  CLUS_3                        71                          41
D10V3, multiclass
        clus
vv       AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE
  CLUS_1                        43                          30
  CLUS_2                        23                          19
  CLUS_3                        30                          17
D10V4, multiclass
        clus
vv       AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE
  CLUS_1                        30                          23
  CLUS_2                        40                          31
  CLUS_3                        26                          12
D10V5, multiclass
        clus
vv       AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE
  CLUS_1                        22                          22
  CLUS_2                        43                          38
  CLUS_3                        59                          26
  CLUS_4                        43                          29
D10V6, multiclass
        clus
vv       AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE
  CLUS_1                        39                          40
  CLUS_2                        69                          46
  CLUS_3                        59                          29
D10V7, multiclass
        clus
vv       AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE
  CLUS_1                        70                          52
  CLUS_2                        51                          37
  CLUS_3                        47                          25
D10V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 10(7Q34) MUTATED    101   67
  AMP PEAK 10(7Q34) WILD-TYPE   75   39
        clus
vv       AMP PEAK 10(7Q34) MUTATED AMP PEAK 10(7Q34) WILD-TYPE
  CLUS_1                       101                          75
  CLUS_2                        67                          39

Clustering(11) Variable = Amp Peak 11(8q11.22) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE
  CLUS_1                           14                             40
  CLUS_2                           51                             44
  CLUS_3                           17                             51
  CLUS_4                           38                             33
D11V2, multiclass
        clus
vv       AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE
  CLUS_1                           37                             34
  CLUS_2                           38                             67
  CLUS_3                           45                             67
D11V3, multiclass
        clus
vv       AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE
  CLUS_1                           32                             41
  CLUS_2                           13                             29
  CLUS_3                           21                             26
D11V4, multiclass
        clus
vv       AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE
  CLUS_1                           24                             29
  CLUS_2                           24                             47
  CLUS_3                           18                             20
D11V5, multiclass
        clus
vv       AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE
  CLUS_1                           20                             24
  CLUS_2                           28                             53
  CLUS_3                           45                             40
  CLUS_4                           24                             48
D11V6, multiclass
        clus
vv       AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE
  CLUS_1                           35                             44
  CLUS_2                           38                             77
  CLUS_3                           44                             44
D11V7, multiclass
        clus
vv       AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE
  CLUS_1                           47                             75
  CLUS_2                           43                             45
  CLUS_3                           27                             45
D11V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8Q11.22) MUTATED     73   44
  AMP PEAK 11(8Q11.22) WILD-TYPE  103   62
        clus
vv       AMP PEAK 11(8Q11.22) MUTATED AMP PEAK 11(8Q11.22) WILD-TYPE
  CLUS_1                           73                            103
  CLUS_2                           44                             62

Clustering(12) Variable = Amp Peak 12(8q24.3) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE
  CLUS_1                          17                            37
  CLUS_2                          61                            34
  CLUS_3                          19                            49
  CLUS_4                          42                            29
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE
  CLUS_1                          43                            28
  CLUS_2                          47                            58
  CLUS_3                          49                            63
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE
  CLUS_1                          36                            37
  CLUS_2                          19                            23
  CLUS_3                          23                            24
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE
  CLUS_1                          24                            29
  CLUS_2                          34                            37
  CLUS_3                          20                            18
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE
  CLUS_1                          21                            23
  CLUS_2                          38                            43
  CLUS_3                          50                            35
  CLUS_4                          27                            45
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE
  CLUS_1                          39                            40
  CLUS_2                          49                            66
  CLUS_3                          48                            40
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE
  CLUS_1                          58                            64
  CLUS_2                          47                            41
  CLUS_3                          31                            41
D12V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(8Q24.3) MUTATED     88   48
  AMP PEAK 12(8Q24.3) WILD-TYPE   88   58
        clus
vv       AMP PEAK 12(8Q24.3) MUTATED AMP PEAK 12(8Q24.3) WILD-TYPE
  CLUS_1                          88                            88
  CLUS_2                          48                            58

Clustering(13) Variable = Amp Peak 13(9p24.1) mutation analysis
D13V1, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           4                            50
  CLUS_2                           7                            88
  CLUS_3                           4                            64
  CLUS_4                           7                            64
D13V2, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           8                            63
  CLUS_2                           7                            98
  CLUS_3                           7                           105
D13V3, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           9                            64
  CLUS_2                           2                            40
  CLUS_3                           4                            43
D13V4, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           5                            48
  CLUS_2                           6                            65
  CLUS_3                           4                            34
D13V5, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           2                            42
  CLUS_2                           6                            75
  CLUS_3                           8                            77
  CLUS_4                           5                            67
D13V6, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           3                            76
  CLUS_2                          11                           104
  CLUS_3                           7                            81
D13V7, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           6                           116
  CLUS_2                          11                            77
  CLUS_3                           5                            67
D13V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(9P24.1) MUTATED     12   10
  AMP PEAK 13(9P24.1) WILD-TYPE  164   96
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          12                           164
  CLUS_2                          10                            96

Clustering(14) Variable = Amp Peak 14(11q13.3) mutation analysis
D14V1, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                           27                             68
  CLUS_3                            6                             62
  CLUS_4                            8                             63
D14V2, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           18                             53
  CLUS_2                           13                             92
  CLUS_3                           20                             92
D14V3, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           13                             60
  CLUS_2                            6                             36
  CLUS_3                            7                             40
D14V4, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           10                             43
  CLUS_2                           12                             59
  CLUS_3                            4                             34
D14V5, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                            5                             39
  CLUS_2                           19                             62
  CLUS_3                           16                             69
  CLUS_4                           10                             62
D14V6, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           12                             67
  CLUS_2                           20                             95
  CLUS_3                           18                             70
D14V7, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           22                            100
  CLUS_2                           17                             71
  CLUS_3                           10                             62
D14V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(11Q13.3) MUTATED     32   17
  AMP PEAK 14(11Q13.3) WILD-TYPE  144   89
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           32                            144
  CLUS_2                           17                             89

Clustering(15) Variable = Amp Peak 15(11q13.4) mutation analysis
D15V1, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                           27                             68
  CLUS_3                            4                             64
  CLUS_4                            7                             64
D15V2, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                           20                             51
  CLUS_2                           11                             94
  CLUS_3                           17                             95
D15V3, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                           14                             59
  CLUS_2                            5                             37
  CLUS_3                            6                             41
D15V4, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                           10                             43
  CLUS_2                           11                             60
  CLUS_3                            4                             34
D15V5, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                            5                             39
  CLUS_2                           18                             63
  CLUS_3                           17                             68
  CLUS_4                            7                             65
D15V6, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                           11                             68
  CLUS_2                           16                             99
  CLUS_3                           20                             68
D15V7, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                           19                            103
  CLUS_2                           18                             70
  CLUS_3                            9                             63
D15V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(11Q13.4) MUTATED     30   16
  AMP PEAK 15(11Q13.4) WILD-TYPE  146   90
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                           30                            146
  CLUS_2                           16                             90

Clustering(16) Variable = Amp Peak 16(12q15) mutation analysis
D16V1, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          8                           46
  CLUS_2                         13                           82
  CLUS_3                          3                           65
  CLUS_4                         19                           52
D16V2, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         11                           60
  CLUS_2                         16                           89
  CLUS_3                         16                           96
D16V3, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         10                           63
  CLUS_2                          7                           35
  CLUS_3                          9                           38
D16V4, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          6                           47
  CLUS_2                         14                           57
  CLUS_3                          6                           32
D16V5, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          6                           38
  CLUS_2                         14                           67
  CLUS_3                         13                           72
  CLUS_4                          9                           63
D16V6, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         11                           68
  CLUS_2                         17                           98
  CLUS_3                         14                           74
D16V7, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         19                          103
  CLUS_2                         14                           74
  CLUS_3                         10                           62
D16V8, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 16(12Q15) MUTATED     25   18
  AMP PEAK 16(12Q15) WILD-TYPE  151   88
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         25                          151
  CLUS_2                         18                           88

Clustering(17) Variable = Amp Peak 17(13q31.3) mutation analysis
D17V1, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           16                             38
  CLUS_2                           48                             47
  CLUS_3                            4                             64
  CLUS_4                           10                             61
D17V2, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           35                             36
  CLUS_2                           25                             80
  CLUS_3                           18                             94
D17V3, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           19                             54
  CLUS_2                           10                             32
  CLUS_3                           12                             35
D17V4, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           14                             39
  CLUS_2                           18                             53
  CLUS_3                            9                             29
D17V5, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           10                             34
  CLUS_2                           21                             60
  CLUS_3                           36                             49
  CLUS_4                           10                             62
D17V6, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           24                             55
  CLUS_2                           23                             92
  CLUS_3                           30                             58
D17V7, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           35                             87
  CLUS_2                           24                             64
  CLUS_3                           15                             57
D17V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(13Q31.3) MUTATED     48   26
  AMP PEAK 17(13Q31.3) WILD-TYPE  128   80
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           48                            128
  CLUS_2                           26                             80

Clustering(18) Variable = Amp Peak 18(15q24.3) mutation analysis
D18V1, multiclass
        clus
vv       AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                           29                             66
  CLUS_3                           11                             57
  CLUS_4                           36                             35
D18V2, multiclass
        clus
vv       AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE
  CLUS_1                           20                             51
  CLUS_2                           33                             72
  CLUS_3                           33                             79
D18V3, multiclass
        clus
vv       AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE
  CLUS_1                           22                             51
  CLUS_2                           10                             32
  CLUS_3                           13                             34
D18V4, multiclass
        clus
vv       AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE
  CLUS_1                           16                             37
  CLUS_2                           22                             49
  CLUS_3                            7                             31
D18V5, multiclass
        clus
vv       AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE
  CLUS_1                            2                             42
  CLUS_2                           25                             56
  CLUS_3                           33                             52
  CLUS_4                           24                             48
D18V6, multiclass
        clus
vv       AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE
  CLUS_1                           12                             67
  CLUS_2                           40                             75
  CLUS_3                           32                             56
D18V7, multiclass
        clus
vv       AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE
  CLUS_1                           34                             88
  CLUS_2                           26                             62
  CLUS_3                           23                             49
D18V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(15Q24.3) MUTATED     46   37
  AMP PEAK 18(15Q24.3) WILD-TYPE  130   69
        clus
vv       AMP PEAK 18(15Q24.3) MUTATED AMP PEAK 18(15Q24.3) WILD-TYPE
  CLUS_1                           46                            130
  CLUS_2                           37                             69

Clustering(19) Variable = Amp Peak 19(17q25.3) mutation analysis
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                           43                             52
  CLUS_3                           11                             57
  CLUS_4                           29                             42
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           34                             37
  CLUS_2                           32                             73
  CLUS_3                           27                             85
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           27                             46
  CLUS_2                           22                             20
  CLUS_3                           10                             37
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           16                             37
  CLUS_2                           35                             36
  CLUS_3                            8                             30
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           36                             45
  CLUS_3                           23                             62
  CLUS_4                           23                             49
D19V6, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           24                             55
  CLUS_2                           42                             73
  CLUS_3                           25                             63
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           47                             75
  CLUS_2                           24                             64
  CLUS_3                           21                             51
D19V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q25.3) MUTATED     65   27
  AMP PEAK 19(17Q25.3) WILD-TYPE  111   79
        clus
vv       AMP PEAK 19(17Q25.3) MUTATED AMP PEAK 19(17Q25.3) WILD-TYPE
  CLUS_1                           65                            111
  CLUS_2                           27                             79

Clustering(20) Variable = Amp Peak 20(19p13.2) mutation analysis
D20V1, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                           22                             73
  CLUS_3                            6                             62
  CLUS_4                           19                             52
D20V2, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           16                             55
  CLUS_2                           23                             82
  CLUS_3                           18                             94
D20V3, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           15                             58
  CLUS_2                            7                             35
  CLUS_3                           10                             37
D20V4, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           16                             37
  CLUS_2                            8                             63
  CLUS_3                            8                             30
D20V5, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            4                             40
  CLUS_2                           15                             66
  CLUS_3                           26                             59
  CLUS_4                           10                             62
D20V6, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           12                             67
  CLUS_2                           14                            101
  CLUS_3                           29                             59
D20V7, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           18                            104
  CLUS_2                           17                             71
  CLUS_3                           20                             52
D20V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) MUTATED     25   30
  AMP PEAK 20(19P13.2) WILD-TYPE  151   76
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           25                            151
  CLUS_2                           30                             76

Clustering(21) Variable = Amp Peak 21(20q13.2) mutation analysis
D21V1, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                           20                             34
  CLUS_2                           53                             42
  CLUS_3                           23                             45
  CLUS_4                           52                             19
D21V2, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                           45                             26
  CLUS_2                           49                             56
  CLUS_3                           54                             58
D21V3, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                           40                             33
  CLUS_2                           18                             24
  CLUS_3                           26                             21
D21V4, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                           28                             25
  CLUS_2                           36                             35
  CLUS_3                           20                             18
D21V5, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                           19                             25
  CLUS_2                           40                             41
  CLUS_3                           55                             30
  CLUS_4                           32                             40
D21V6, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                           39                             40
  CLUS_2                           54                             61
  CLUS_3                           53                             35
D21V7, multiclass
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                           59                             63
  CLUS_2                           47                             41
  CLUS_3                           38                             34
D21V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(20Q13.2) MUTATED     85   59
  AMP PEAK 21(20Q13.2) WILD-TYPE   91   47
        clus
vv       AMP PEAK 21(20Q13.2) MUTATED AMP PEAK 21(20Q13.2) WILD-TYPE
  CLUS_1                           85                             91
  CLUS_2                           59                             47

Clustering(22) Variable = Amp Peak 22(22q13.2) mutation analysis
D22V1, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           12                             42
  CLUS_2                           31                             64
  CLUS_3                           21                             47
  CLUS_4                           50                             21
D22V2, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           33                             38
  CLUS_2                           41                             64
  CLUS_3                           40                             72
D22V3, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           31                             42
  CLUS_2                           16                             26
  CLUS_3                           14                             33
D22V4, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           20                             33
  CLUS_2                           30                             41
  CLUS_3                           11                             27
D22V5, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           32                             49
  CLUS_3                           37                             48
  CLUS_4                           29                             43
D22V6, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           30                             49
  CLUS_2                           44                             71
  CLUS_3                           37                             51
D22V7, multiclass
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           44                             78
  CLUS_2                           34                             54
  CLUS_3                           33                             39
D22V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(22Q13.2) MUTATED     67   44
  AMP PEAK 22(22Q13.2) WILD-TYPE  109   62
        clus
vv       AMP PEAK 22(22Q13.2) MUTATED AMP PEAK 22(22Q13.2) WILD-TYPE
  CLUS_1                           67                            109
  CLUS_2                           44                             62

Clustering(23) Variable = Del Peak  1(1p36.31) mutation analysis
D23V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           16                             38
  CLUS_2                           32                             63
  CLUS_3                            5                             63
  CLUS_4                           17                             54
D23V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           31                             40
  CLUS_2                           23                             82
  CLUS_3                           16                             96
D23V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           17                             56
  CLUS_2                            9                             33
  CLUS_3                            9                             38
D23V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            8                             45
  CLUS_2                           20                             51
  CLUS_3                            7                             31
D23V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           14                             30
  CLUS_2                           20                             61
  CLUS_3                           27                             58
  CLUS_4                            9                             63
D23V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           27                             52
  CLUS_2                           17                             98
  CLUS_3                           26                             62
D23V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           34                             88
  CLUS_2                           15                             73
  CLUS_3                           20                             52
D23V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.31) MUTATED     48   21
  DEL PEAK  1(1P36.31) WILD-TYPE  128   85
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           48                            128
  CLUS_2                           21                             85

Clustering(24) Variable = Del Peak  2(1p22.1) mutation analysis
D24V1, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          16                            38
  CLUS_2                          28                            67
  CLUS_3                           6                            62
  CLUS_4                          23                            48
D24V2, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          33                            38
  CLUS_2                          15                            90
  CLUS_3                          25                            87
D24V3, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          19                            54
  CLUS_2                          10                            32
  CLUS_3                          11                            36
D24V4, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          12                            41
  CLUS_2                          23                            48
  CLUS_3                           5                            33
D24V5, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          10                            34
  CLUS_2                          17                            64
  CLUS_3                          37                            48
  CLUS_4                           9                            63
D24V6, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          16                            63
  CLUS_2                          21                            94
  CLUS_3                          36                            52
D24V7, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          30                            92
  CLUS_2                          22                            66
  CLUS_3                          20                            52
D24V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED     42   30
  DEL PEAK  2(1P22.1) WILD-TYPE  134   76
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          42                           134
  CLUS_2                          30                            76

Clustering(25) Variable = Del Peak  3(2q37.3) mutation analysis
D25V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          16                            38
  CLUS_2                          29                            66
  CLUS_3                           8                            60
  CLUS_4                          17                            54
D25V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          22                            49
  CLUS_2                          27                            78
  CLUS_3                          21                            91
D25V3, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          19                            54
  CLUS_2                          11                            31
  CLUS_3                           8                            39
D25V4, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          10                            43
  CLUS_2                          22                            49
  CLUS_3                           6                            32
D25V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           9                            35
  CLUS_2                          33                            48
  CLUS_3                          15                            70
  CLUS_4                          12                            60
D25V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          23                            56
  CLUS_2                          29                            86
  CLUS_3                          17                            71
D25V7, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          38                            84
  CLUS_2                          19                            69
  CLUS_3                          11                            61
D25V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED     48   20
  DEL PEAK  3(2Q37.3) WILD-TYPE  128   86
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          48                           128
  CLUS_2                          20                            86

Clustering(26) Variable = Del Peak  4(3p26.1) mutation analysis
D26V1, multiclass
        clus
vv       DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          14                            40
  CLUS_2                          15                            80
  CLUS_3                           9                            59
  CLUS_4                          13                            58
D26V2, multiclass
        clus
vv       DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          11                            60
  CLUS_2                          17                            88
  CLUS_3                          23                            89
D26V3, multiclass
        clus
vv       DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          13                            60
  CLUS_2                          10                            32
  CLUS_3                           8                            39
D26V4, multiclass
        clus
vv       DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          11                            42
  CLUS_2                          14                            57
  CLUS_3                           6                            32
D26V5, multiclass
        clus
vv       DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                           5                            39
  CLUS_2                          14                            67
  CLUS_3                          21                            64
  CLUS_4                          11                            61
D26V6, multiclass
        clus
vv       DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          12                            67
  CLUS_2                          18                            97
  CLUS_3                          21                            67
D26V7, multiclass
        clus
vv       DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          19                           103
  CLUS_2                          19                            69
  CLUS_3                          12                            60
D26V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P26.1) MUTATED     31   19
  DEL PEAK  4(3P26.1) WILD-TYPE  145   87
        clus
vv       DEL PEAK  4(3P26.1) MUTATED DEL PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          31                           145
  CLUS_2                          19                            87

Clustering(27) Variable = Del Peak  5(3q23) mutation analysis
D27V1, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                        10                          44
  CLUS_2                        15                          80
  CLUS_3                         6                          62
  CLUS_4                         9                          62
D27V2, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                        11                          60
  CLUS_2                        21                          84
  CLUS_3                         8                         104
D27V3, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                        14                          59
  CLUS_2                         8                          34
  CLUS_3                         5                          42
D27V4, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                         9                          44
  CLUS_2                        14                          57
  CLUS_3                         4                          34
D27V5, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                         4                          40
  CLUS_2                        15                          66
  CLUS_3                        13                          72
  CLUS_4                         8                          64
D27V6, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                        11                          68
  CLUS_2                        16                          99
  CLUS_3                        13                          75
D27V7, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                        19                         103
  CLUS_2                         9                          79
  CLUS_3                        11                          61
D27V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(3Q23) MUTATED     27   12
  DEL PEAK  5(3Q23) WILD-TYPE  149   94
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                        27                         149
  CLUS_2                        12                          94

Clustering(28) Variable = Del Peak  6(4p16.3) mutation analysis
D28V1, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          12                            42
  CLUS_2                          20                            75
  CLUS_3                          11                            57
  CLUS_4                          21                            50
D28V2, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          19                            52
  CLUS_2                          25                            80
  CLUS_3                          20                            92
D28V3, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          17                            56
  CLUS_2                          10                            32
  CLUS_3                          12                            35
D28V4, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          13                            40
  CLUS_2                          19                            52
  CLUS_3                           7                            31
D28V5, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           8                            36
  CLUS_2                          22                            59
  CLUS_3                          23                            62
  CLUS_4                          11                            61
D28V6, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          16                            63
  CLUS_2                          24                            91
  CLUS_3                          24                            64
D28V7, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          25                            97
  CLUS_2                          19                            69
  CLUS_3                          19                            53
D28V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4P16.3) MUTATED     36   27
  DEL PEAK  6(4P16.3) WILD-TYPE  140   79
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          36                           140
  CLUS_2                          27                            79

Clustering(29) Variable = Del Peak  7(4q34.3) mutation analysis
D29V1, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          13                            41
  CLUS_2                          24                            71
  CLUS_3                          12                            56
  CLUS_4                          31                            40
D29V2, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          25                            46
  CLUS_2                          24                            81
  CLUS_3                          31                            81
D29V3, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          19                            54
  CLUS_2                           9                            33
  CLUS_3                          15                            32
D29V4, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          17                            36
  CLUS_2                          18                            53
  CLUS_3                           8                            30
D29V5, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          14                            30
  CLUS_2                          19                            62
  CLUS_3                          30                            55
  CLUS_4                          16                            56
D29V6, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          19                            60
  CLUS_2                          28                            87
  CLUS_3                          32                            56
D29V7, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          27                            95
  CLUS_2                          28                            60
  CLUS_3                          25                            47
D29V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q34.3) MUTATED     40   40
  DEL PEAK  7(4Q34.3) WILD-TYPE  136   66
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          40                           136
  CLUS_2                          40                            66

Clustering(30) Variable = Del Peak  8(5q11.2) mutation analysis
D30V1, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          25                            29
  CLUS_2                          17                            78
  CLUS_3                           6                            62
  CLUS_4                          28                            43
D30V2, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          13                            58
  CLUS_2                          34                            71
  CLUS_3                          29                            83
D30V3, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          18                            55
  CLUS_2                          15                            27
  CLUS_3                          12                            35
D30V4, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          11                            42
  CLUS_2                          26                            45
  CLUS_3                           8                            30
D30V5, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                           9                            35
  CLUS_2                          24                            57
  CLUS_3                          26                            59
  CLUS_4                          17                            55
D30V6, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          22                            57
  CLUS_2                          31                            84
  CLUS_3                          23                            65
D30V7, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          27                            95
  CLUS_2                          25                            63
  CLUS_3                          22                            50
D30V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q11.2) MUTATED     45   29
  DEL PEAK  8(5Q11.2) WILD-TYPE  131   77
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          45                           131
  CLUS_2                          29                            77

Clustering(31) Variable = Del Peak  9(5q31.3) mutation analysis
D31V1, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          32                            22
  CLUS_2                          23                            72
  CLUS_3                          14                            54
  CLUS_4                          35                            36
D31V2, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          11                            60
  CLUS_2                          52                            53
  CLUS_3                          41                            71
D31V3, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          23                            50
  CLUS_2                          20                            22
  CLUS_3                          17                            30
D31V4, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          18                            35
  CLUS_2                          29                            42
  CLUS_3                          13                            25
D31V5, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          14                            30
  CLUS_2                          30                            51
  CLUS_3                          34                            51
  CLUS_4                          25                            47
D31V6, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          28                            51
  CLUS_2                          41                            74
  CLUS_3                          34                            54
D31V7, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          38                            84
  CLUS_2                          34                            54
  CLUS_3                          30                            42
D31V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(5Q31.3) MUTATED     62   40
  DEL PEAK  9(5Q31.3) WILD-TYPE  114   66
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          62                           114
  CLUS_2                          40                            66

Clustering(32) Variable = Del Peak 10(6q16.3) mutation analysis
D32V1, multiclass
        clus
vv       DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  CLUS_1                           6                            48
  CLUS_2                          77                            18
  CLUS_3                          28                            40
  CLUS_4                          49                            22
D32V2, multiclass
        clus
vv       DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  CLUS_1                          43                            28
  CLUS_2                          65                            40
  CLUS_3                          52                            60
D32V3, multiclass
        clus
vv       DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  CLUS_1                          39                            34
  CLUS_2                          21                            21
  CLUS_3                          29                            18
D32V4, multiclass
        clus
vv       DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  CLUS_1                          28                            25
  CLUS_2                          37                            34
  CLUS_3                          24                            14
D32V5, multiclass
        clus
vv       DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  CLUS_1                          22                            22
  CLUS_2                          45                            36
  CLUS_3                          59                            26
  CLUS_4                          30                            42
D32V6, multiclass
        clus
vv       DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  CLUS_1                          42                            37
  CLUS_2                          57                            58
  CLUS_3                          57                            31
D32V7, multiclass
        clus
vv       DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  CLUS_1                          70                            52
  CLUS_2                          46                            42
  CLUS_3                          42                            30
D32V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(6Q16.3) MUTATED     98   60
  DEL PEAK 10(6Q16.3) WILD-TYPE   78   46
        clus
vv       DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  CLUS_1                          98                            78
  CLUS_2                          60                            46

Clustering(33) Variable = Del Peak 11(6q26) mutation analysis
D33V1, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         7                          47
  CLUS_2                        84                          11
  CLUS_3                        32                          36
  CLUS_4                        50                          21
D33V2, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        46                          25
  CLUS_2                        68                          37
  CLUS_3                        59                          53
D33V3, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        47                          26
  CLUS_2                        22                          20
  CLUS_3                        28                          19
D33V4, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        33                          20
  CLUS_2                        43                          28
  CLUS_3                        21                          17
D33V5, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        24                          20
  CLUS_2                        46                          35
  CLUS_3                        65                          20
  CLUS_4                        35                          37
D33V6, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        45                          34
  CLUS_2                        63                          52
  CLUS_3                        62                          26
D33V7, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        79                          43
  CLUS_2                        49                          39
  CLUS_3                        43                          29
D33V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q26) MUTATED    108   63
  DEL PEAK 11(6Q26) WILD-TYPE   68   43
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                       108                          68
  CLUS_2                        63                          43

Clustering(34) Variable = Del Peak 12(6q27) mutation analysis
D34V1, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                         7                          47
  CLUS_2                        81                          14
  CLUS_3                        34                          34
  CLUS_4                        49                          22
D34V2, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        43                          28
  CLUS_2                        68                          37
  CLUS_3                        60                          52
D34V3, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        46                          27
  CLUS_2                        22                          20
  CLUS_3                        28                          19
D34V4, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        32                          21
  CLUS_2                        42                          29
  CLUS_3                        22                          16
D34V5, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        24                          20
  CLUS_2                        45                          36
  CLUS_3                        64                          21
  CLUS_4                        35                          37
D34V6, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        43                          36
  CLUS_2                        65                          50
  CLUS_3                        60                          28
D34V7, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        77                          45
  CLUS_2                        49                          39
  CLUS_3                        43                          29
D34V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 12(6Q27) MUTATED    106   63
  DEL PEAK 12(6Q27) WILD-TYPE   70   43
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                       106                          70
  CLUS_2                        63                          43

Clustering(35) Variable = Del Peak 13(8p23.3) mutation analysis
D35V1, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                           8                            46
  CLUS_2                          35                            60
  CLUS_3                          13                            55
  CLUS_4                          19                            52
D35V2, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          26                            45
  CLUS_2                          30                            75
  CLUS_3                          19                            93
D35V3, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          21                            52
  CLUS_2                          13                            29
  CLUS_3                          10                            37
D35V4, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          13                            40
  CLUS_2                          23                            48
  CLUS_3                           8                            30
D35V5, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                           8                            36
  CLUS_2                          25                            56
  CLUS_3                          25                            60
  CLUS_4                          15                            57
D35V6, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          21                            58
  CLUS_2                          31                            84
  CLUS_3                          21                            67
D35V7, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          37                            85
  CLUS_2                          17                            71
  CLUS_3                          20                            52
D35V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(8P23.3) MUTATED     51   23
  DEL PEAK 13(8P23.3) WILD-TYPE  125   83
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          51                           125
  CLUS_2                          23                            83

Clustering(36) Variable = Del Peak 14(9p23) mutation analysis
D36V1, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        48                           6
  CLUS_2                        76                          19
  CLUS_3                        28                          40
  CLUS_4                        47                          24
D36V2, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        55                          16
  CLUS_2                        76                          29
  CLUS_3                        68                          44
D36V3, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        49                          24
  CLUS_2                        28                          14
  CLUS_3                        32                          15
D36V4, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        37                          16
  CLUS_2                        46                          25
  CLUS_3                        26                          12
D36V5, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        31                          13
  CLUS_2                        52                          29
  CLUS_3                        72                          13
  CLUS_4                        42                          30
D36V6, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        59                          20
  CLUS_2                        67                          48
  CLUS_3                        71                          17
D36V7, multiclass
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                        85                          37
  CLUS_2                        59                          29
  CLUS_3                        50                          22
D36V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(9P23) MUTATED    125   69
  DEL PEAK 14(9P23) WILD-TYPE   51   37
        clus
vv       DEL PEAK 14(9P23) MUTATED DEL PEAK 14(9P23) WILD-TYPE
  CLUS_1                       125                          51
  CLUS_2                        69                          37

Clustering(37) Variable = Del Peak 15(9p21.3) mutation analysis
D37V1, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          51                             3
  CLUS_2                          86                             9
  CLUS_3                          30                            38
  CLUS_4                          56                            15
D37V2, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          63                             8
  CLUS_2                          87                            18
  CLUS_3                          73                            39
D37V3, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          58                            15
  CLUS_2                          33                             9
  CLUS_3                          34                            13
D37V4, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          42                            11
  CLUS_2                          55                            16
  CLUS_3                          28                            10
D37V5, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          35                             9
  CLUS_2                          59                            22
  CLUS_3                          80                             5
  CLUS_4                          47                            25
D37V6, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          67                            12
  CLUS_2                          76                            39
  CLUS_3                          78                            10
D37V7, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          95                            27
  CLUS_2                          66                            22
  CLUS_3                          57                            15
D37V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(9P21.3) MUTATED    137   81
  DEL PEAK 15(9P21.3) WILD-TYPE   39   25
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                         137                            39
  CLUS_2                          81                            25

Clustering(38) Variable = Del Peak 16(10p15.3) mutation analysis
D38V1, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           34                             20
  CLUS_2                           51                             44
  CLUS_3                           22                             46
  CLUS_4                           54                             17
D38V2, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           47                             24
  CLUS_2                           62                             43
  CLUS_3                           52                             60
D38V3, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           41                             32
  CLUS_2                           23                             19
  CLUS_3                           27                             20
D38V4, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           31                             22
  CLUS_2                           40                             31
  CLUS_3                           20                             18
D38V5, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           21                             23
  CLUS_2                           40                             41
  CLUS_3                           65                             20
  CLUS_4                           32                             40
D38V6, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           46                             33
  CLUS_2                           47                             68
  CLUS_3                           65                             23
D38V7, multiclass
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                           68                             54
  CLUS_2                           54                             34
  CLUS_3                           39                             33
D38V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(10P15.3) MUTATED    100   61
  DEL PEAK 16(10P15.3) WILD-TYPE   76   45
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  CLUS_1                          100                             76
  CLUS_2                           61                             45

Clustering(39) Variable = Del Peak 17(10q23.31) mutation analysis
D39V1, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            42                              12
  CLUS_2                            53                              42
  CLUS_3                            23                              45
  CLUS_4                            60                              11
D39V2, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            51                              20
  CLUS_2                            67                              38
  CLUS_3                            60                              52
D39V3, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            45                              28
  CLUS_2                            21                              21
  CLUS_3                            29                              18
D39V4, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            31                              22
  CLUS_2                            44                              27
  CLUS_3                            20                              18
D39V5, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            23                              21
  CLUS_2                            46                              35
  CLUS_3                            69                              16
  CLUS_4                            38                              34
D39V6, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            46                              33
  CLUS_2                            63                              52
  CLUS_3                            67                              21
D39V7, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            74                              48
  CLUS_2                            53                              35
  CLUS_3                            49                              23
D39V8, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(10Q23.31) MUTATED    108   68
  DEL PEAK 17(10Q23.31) WILD-TYPE   68   38
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                           108                              68
  CLUS_2                            68                              38

Clustering(40) Variable = Del Peak 18(10q26.3) mutation analysis
D40V1, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           43                             11
  CLUS_2                           56                             39
  CLUS_3                           26                             42
  CLUS_4                           55                             16
D40V2, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           51                             20
  CLUS_2                           66                             39
  CLUS_3                           63                             49
D40V3, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           45                             28
  CLUS_2                           21                             21
  CLUS_3                           29                             18
D40V4, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           32                             21
  CLUS_2                           42                             29
  CLUS_3                           21                             17
D40V5, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           23                             21
  CLUS_2                           45                             36
  CLUS_3                           70                             15
  CLUS_4                           39                             33
D40V6, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           44                             35
  CLUS_2                           63                             52
  CLUS_3                           70                             18
D40V7, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           73                             49
  CLUS_2                           59                             29
  CLUS_3                           46                             26
D40V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q26.3) MUTATED    110   68
  DEL PEAK 18(10Q26.3) WILD-TYPE   66   38
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                          110                             66
  CLUS_2                           68                             38

Clustering(41) Variable = Del Peak 19(11q23.3) mutation analysis
D41V1, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           23                             31
  CLUS_2                           54                             41
  CLUS_3                           25                             43
  CLUS_4                           52                             19
D41V2, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           46                             25
  CLUS_2                           54                             51
  CLUS_3                           54                             58
D41V3, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           40                             33
  CLUS_2                           26                             16
  CLUS_3                           23                             24
D41V4, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           27                             26
  CLUS_2                           45                             26
  CLUS_3                           17                             21
D41V5, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           21                             23
  CLUS_2                           50                             31
  CLUS_3                           46                             39
  CLUS_4                           34                             38
D41V6, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           40                             39
  CLUS_2                           67                             48
  CLUS_3                           44                             44
D41V7, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           69                             53
  CLUS_2                           41                             47
  CLUS_3                           42                             30
D41V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q23.3) MUTATED    102   50
  DEL PEAK 19(11Q23.3) WILD-TYPE   74   56
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                          102                             74
  CLUS_2                           50                             56

Clustering(42) Variable = Del Peak 20(12q24.33) mutation analysis
D42V1, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                             8                              46
  CLUS_2                            30                              65
  CLUS_3                            14                              54
  CLUS_4                            16                              55
D42V2, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            23                              48
  CLUS_2                            28                              77
  CLUS_3                            17                              95
D42V3, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            20                              53
  CLUS_2                             8                              34
  CLUS_3                            11                              36
D42V4, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            12                              41
  CLUS_2                            19                              52
  CLUS_3                             8                              30
D42V5, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            11                              33
  CLUS_2                            14                              67
  CLUS_3                            24                              61
  CLUS_4                            19                              53
D42V6, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            22                              57
  CLUS_2                            21                              94
  CLUS_3                            25                              63
D42V7, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            29                              93
  CLUS_2                            21                              67
  CLUS_3                            16                              56
D42V8, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 20(12Q24.33) MUTATED     45   21
  DEL PEAK 20(12Q24.33) WILD-TYPE  131   85
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            45                             131
  CLUS_2                            21                              85

Clustering(43) Variable = Del Peak 21(13q34) mutation analysis
D43V1, multiclass
        clus
vv       DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE
  CLUS_1                          9                           45
  CLUS_2                         12                           83
  CLUS_3                         13                           55
  CLUS_4                         30                           41
D43V2, multiclass
        clus
vv       DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE
  CLUS_1                          7                           64
  CLUS_2                         23                           82
  CLUS_3                         34                           78
D43V3, multiclass
        clus
vv       DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         14                           59
  CLUS_2                         10                           32
  CLUS_3                         12                           35
D43V4, multiclass
        clus
vv       DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         12                           41
  CLUS_2                         15                           56
  CLUS_3                          9                           29
D43V5, multiclass
        clus
vv       DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE
  CLUS_1                          7                           37
  CLUS_2                         18                           63
  CLUS_3                         17                           68
  CLUS_4                         21                           51
D43V6, multiclass
        clus
vv       DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         10                           69
  CLUS_2                         29                           86
  CLUS_3                         24                           64
D43V7, multiclass
        clus
vv       DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         25                           97
  CLUS_2                         22                           66
  CLUS_3                         15                           57
D43V8, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 21(13Q34) MUTATED     38   24
  DEL PEAK 21(13Q34) WILD-TYPE  138   82
        clus
vv       DEL PEAK 21(13Q34) MUTATED DEL PEAK 21(13Q34) WILD-TYPE
  CLUS_1                         38                          138
  CLUS_2                         24                           82

Clustering(44) Variable = Del Peak 22(14q32.2) mutation analysis
D44V1, multiclass
        clus
vv       DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                           45                             50
  CLUS_3                           13                             55
  CLUS_4                           28                             43
D44V2, multiclass
        clus
vv       DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE
  CLUS_1                           26                             45
  CLUS_2                           35                             70
  CLUS_3                           35                             77
D44V3, multiclass
        clus
vv       DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE
  CLUS_1                           28                             45
  CLUS_2                            8                             34
  CLUS_3                           17                             30
D44V4, multiclass
        clus
vv       DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE
  CLUS_1                           20                             33
  CLUS_2                           19                             52
  CLUS_3                           14                             24
D44V5, multiclass
        clus
vv       DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           18                             63
  CLUS_3                           41                             44
  CLUS_4                           23                             49
D44V6, multiclass
        clus
vv       DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE
  CLUS_1                           23                             56
  CLUS_2                           32                             83
  CLUS_3                           40                             48
D44V7, multiclass
        clus
vv       DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE
  CLUS_1                           36                             86
  CLUS_2                           33                             55
  CLUS_3                           24                             48
D44V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q32.2) MUTATED     54   39
  DEL PEAK 22(14Q32.2) WILD-TYPE  122   67
        clus
vv       DEL PEAK 22(14Q32.2) MUTATED DEL PEAK 22(14Q32.2) WILD-TYPE
  CLUS_1                           54                            122
  CLUS_2                           39                             67

Clustering(45) Variable = Del Peak 23(15q13.3) mutation analysis
D45V1, multiclass
        clus
vv       DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE
  CLUS_1                            7                             47
  CLUS_2                           25                             70
  CLUS_3                           11                             57
  CLUS_4                           18                             53
D45V2, multiclass
        clus
vv       DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE
  CLUS_1                           18                             53
  CLUS_2                           28                             77
  CLUS_3                           15                             97
D45V3, multiclass
        clus
vv       DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE
  CLUS_1                           17                             56
  CLUS_2                            8                             34
  CLUS_3                            9                             38
D45V4, multiclass
        clus
vv       DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE
  CLUS_1                           13                             40
  CLUS_2                           13                             58
  CLUS_3                            8                             30
D45V5, multiclass
        clus
vv       DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           21                             60
  CLUS_3                           18                             67
  CLUS_4                           12                             60
D45V6, multiclass
        clus
vv       DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE
  CLUS_1                           19                             60
  CLUS_2                           22                             93
  CLUS_3                           19                             69
D45V7, multiclass
        clus
vv       DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE
  CLUS_1                           24                             98
  CLUS_2                           23                             65
  CLUS_3                           13                             59
D45V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(15Q13.3) MUTATED     38   22
  DEL PEAK 23(15Q13.3) WILD-TYPE  138   84
        clus
vv       DEL PEAK 23(15Q13.3) MUTATED DEL PEAK 23(15Q13.3) WILD-TYPE
  CLUS_1                           38                            138
  CLUS_2                           22                             84

Clustering(46) Variable = Del Peak 24(15q15.1) mutation analysis
D46V1, multiclass
        clus
vv       DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE
  CLUS_1                            8                             46
  CLUS_2                           31                             64
  CLUS_3                           12                             56
  CLUS_4                           16                             55
D46V2, multiclass
        clus
vv       DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE
  CLUS_1                           20                             51
  CLUS_2                           30                             75
  CLUS_3                           17                             95
D46V3, multiclass
        clus
vv       DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE
  CLUS_1                           20                             53
  CLUS_2                           10                             32
  CLUS_3                            8                             39
D46V4, multiclass
        clus
vv       DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE
  CLUS_1                           15                             38
  CLUS_2                           16                             55
  CLUS_3                            7                             31
D46V5, multiclass
        clus
vv       DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           22                             59
  CLUS_3                           17                             68
  CLUS_4                           17                             55
D46V6, multiclass
        clus
vv       DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE
  CLUS_1                           20                             59
  CLUS_2                           26                             89
  CLUS_3                           18                             70
D46V7, multiclass
        clus
vv       DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE
  CLUS_1                           30                             92
  CLUS_2                           22                             66
  CLUS_3                           14                             58
D46V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(15Q15.1) MUTATED     45   21
  DEL PEAK 24(15Q15.1) WILD-TYPE  131   85
        clus
vv       DEL PEAK 24(15Q15.1) MUTATED DEL PEAK 24(15Q15.1) WILD-TYPE
  CLUS_1                           45                            131
  CLUS_2                           21                             85

Clustering(47) Variable = Del Peak 25(16p13.3) mutation analysis
D47V1, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                            8                             46
  CLUS_2                           19                             76
  CLUS_3                            9                             59
  CLUS_4                           16                             55
D47V2, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                           17                             54
  CLUS_2                           22                             83
  CLUS_3                           13                             99
D47V3, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                           20                             53
  CLUS_2                            4                             38
  CLUS_3                            7                             40
D47V4, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                           12                             41
  CLUS_2                           12                             59
  CLUS_3                            7                             31
D47V5, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           18                             63
  CLUS_3                           13                             72
  CLUS_4                           13                             59
D47V6, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                           10                             69
  CLUS_2                           27                             88
  CLUS_3                           15                             73
D47V7, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                           23                             99
  CLUS_2                           13                             75
  CLUS_3                           15                             57
D47V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) MUTATED     35   16
  DEL PEAK 25(16P13.3) WILD-TYPE  141   90
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                           35                            141
  CLUS_2                           16                             90

Clustering(48) Variable = Del Peak 26(16q12.1) mutation analysis
D48V1, multiclass
        clus
vv       DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                           31                             64
  CLUS_3                           21                             47
  CLUS_4                           34                             37
D48V2, multiclass
        clus
vv       DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE
  CLUS_1                           28                             43
  CLUS_2                           35                             70
  CLUS_3                           33                             79
D48V3, multiclass
        clus
vv       DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE
  CLUS_1                           30                             43
  CLUS_2                           10                             32
  CLUS_3                           19                             28
D48V4, multiclass
        clus
vv       DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE
  CLUS_1                           19                             34
  CLUS_2                           22                             49
  CLUS_3                           18                             20
D48V5, multiclass
        clus
vv       DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           33                             48
  CLUS_3                           25                             60
  CLUS_4                           23                             49
D48V6, multiclass
        clus
vv       DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE
  CLUS_1                           22                             57
  CLUS_2                           46                             69
  CLUS_3                           26                             62
D48V7, multiclass
        clus
vv       DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE
  CLUS_1                           43                             79
  CLUS_2                           27                             61
  CLUS_3                           23                             49
D48V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q12.1) MUTATED     65   28
  DEL PEAK 26(16Q12.1) WILD-TYPE  111   78
        clus
vv       DEL PEAK 26(16Q12.1) MUTATED DEL PEAK 26(16Q12.1) WILD-TYPE
  CLUS_1                           65                            111
  CLUS_2                           28                             78

Clustering(49) Variable = Del Peak 27(16q24.3) mutation analysis
D49V1, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                           11                             43
  CLUS_2                           43                             52
  CLUS_3                           22                             46
  CLUS_4                           30                             41
D49V2, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                           32                             39
  CLUS_2                           38                             67
  CLUS_3                           36                             76
D49V3, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                           32                             41
  CLUS_2                           14                             28
  CLUS_3                           15                             32
D49V4, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                           19                             34
  CLUS_2                           26                             45
  CLUS_3                           16                             22
D49V5, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                           12                             32
  CLUS_2                           39                             42
  CLUS_3                           27                             58
  CLUS_4                           25                             47
D49V6, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                           23                             56
  CLUS_2                           52                             63
  CLUS_3                           28                             60
D49V7, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                           51                             71
  CLUS_2                           28                             60
  CLUS_3                           24                             48
D49V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(16Q24.3) MUTATED     74   29
  DEL PEAK 27(16Q24.3) WILD-TYPE  102   77
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                           74                            102
  CLUS_2                           29                             77

Clustering(50) Variable = Del Peak 28(19p13.3) mutation analysis
D50V1, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           12                             42
  CLUS_2                           27                             68
  CLUS_3                           10                             58
  CLUS_4                           34                             37
D50V2, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           21                             50
  CLUS_2                           33                             72
  CLUS_3                           29                             83
D50V3, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           18                             55
  CLUS_2                           21                             21
  CLUS_3                           11                             36
D50V4, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           11                             42
  CLUS_2                           31                             40
  CLUS_3                            8                             30
D50V5, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           12                             32
  CLUS_2                           35                             46
  CLUS_3                           19                             66
  CLUS_4                           17                             55
D50V6, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           27                             52
  CLUS_2                           39                             76
  CLUS_3                           17                             71
D50V7, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           37                             85
  CLUS_2                           26                             62
  CLUS_3                           19                             53
D50V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(19P13.3) MUTATED     58   24
  DEL PEAK 28(19P13.3) WILD-TYPE  118   82
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           58                            118
  CLUS_2                           24                             82

Clustering(51) Variable = Del Peak 29(22q12.1) mutation analysis
D51V1, multiclass
        clus
vv       DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                           23                             72
  CLUS_3                            7                             61
  CLUS_4                            5                             66
D51V2, multiclass
        clus
vv       DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE
  CLUS_1                           15                             56
  CLUS_2                           16                             89
  CLUS_3                           14                             98
D51V3, multiclass
        clus
vv       DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE
  CLUS_1                           10                             63
  CLUS_2                            6                             36
  CLUS_3                            9                             38
D51V4, multiclass
        clus
vv       DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE
  CLUS_1                            6                             47
  CLUS_2                           14                             57
  CLUS_3                            5                             33
D51V5, multiclass
        clus
vv       DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE
  CLUS_1                            6                             38
  CLUS_2                           16                             65
  CLUS_3                           11                             74
  CLUS_4                           11                             61
D51V6, multiclass
        clus
vv       DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE
  CLUS_1                           15                             64
  CLUS_2                           16                             99
  CLUS_3                           13                             75
D51V7, multiclass
        clus
vv       DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE
  CLUS_1                           27                             95
  CLUS_2                           11                             77
  CLUS_3                            6                             66
D51V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(22Q12.1) MUTATED     32   12
  DEL PEAK 29(22Q12.1) WILD-TYPE  144   94
        clus
vv       DEL PEAK 29(22Q12.1) MUTATED DEL PEAK 29(22Q12.1) WILD-TYPE
  CLUS_1                           32                            144
  CLUS_2                           12                             94
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"             "RPPA_CNMF" 
                     V4                      V5                      V6 
   "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL" 
                     V7                      V8 
          "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
