Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-D3-A1Q4-06A-11D-A194-01	TCGA-D3-A1Q5-06A-11D-A194-01	TCGA-D3-A1Q6-06A-11D-A194-01	TCGA-D3-A1Q7-06A-11D-A192-01	TCGA-D3-A1Q9-06A-11D-A192-01	TCGA-D3-A1QA-06A-11D-A194-01	TCGA-D3-A2J7-06A-11D-A194-01	TCGA-D3-A2J9-06A-11D-A194-01	TCGA-D3-A2JA-06A-11D-A194-01	TCGA-D3-A2JD-06A-11D-A192-01	TCGA-D3-A2JG-06A-11D-A194-01	TCGA-D3-A2JK-06A-11D-A194-01	TCGA-D3-A2JN-06A-11D-A194-01	TCGA-D3-A2JP-06A-11D-A192-01	TCGA-D3-A3C1-06A-12D-A194-01	TCGA-D3-A3C3-06A-12D-A192-01	TCGA-D3-A3C6-06A-12D-A194-01	TCGA-D3-A3C7-06A-11D-A194-01	TCGA-D3-A3CB-06A-11D-A194-01	TCGA-D3-A3CE-06A-11D-A192-01	TCGA-D3-A3MO-06A-11D-A219-01	TCGA-D3-A3MR-06A-11D-A219-01	TCGA-D3-A3MU-06A-11D-A219-01	TCGA-D9-A148-06A-11D-A192-01	TCGA-D9-A1JX-06A-11D-A192-01	TCGA-DA-A1HW-06A-11D-A192-01	TCGA-DA-A1HY-06A-11D-A192-01	TCGA-DA-A1I0-06A-11D-A20B-01	TCGA-DA-A1I2-06A-21D-A192-01	TCGA-DA-A1I4-06A-11D-A194-01	TCGA-DA-A1I5-06A-11D-A191-01	TCGA-DA-A1I7-06A-22D-A191-01	TCGA-DA-A1I8-06A-11D-A191-01	TCGA-DA-A3F5-06A-11D-A20B-01	TCGA-DA-A3F8-06A-11D-A20B-01	TCGA-EE-A17Y-06A-11D-A194-01	TCGA-EE-A183-06A-11D-A194-01	TCGA-EE-A20B-06A-11D-A194-01	TCGA-EE-A20F-06A-21D-A194-01	TCGA-EE-A20H-06A-11D-A191-01	TCGA-EE-A29A-06A-12D-A194-01	TCGA-EE-A29C-06A-21D-A191-01	TCGA-EE-A29E-06A-11D-A191-01	TCGA-EE-A29H-06A-12D-A191-01	TCGA-EE-A29M-06A-11D-A194-01	TCGA-EE-A29P-06A-11D-A191-01	TCGA-EE-A29T-06A-11D-A191-01	TCGA-EE-A29W-06A-11D-A194-01	TCGA-EE-A2A6-06A-11D-A191-01	TCGA-EE-A2GB-06A-11D-A191-01	TCGA-EE-A2GE-06A-11D-A194-01	TCGA-EE-A2GH-06A-11D-A194-01	TCGA-EE-A2GS-06A-12D-A191-01	TCGA-EE-A2GT-06A-12D-A191-01	TCGA-EE-A2M5-06A-12D-A191-01	TCGA-EE-A2M6-06A-12D-A191-01	TCGA-EE-A2M7-06A-11D-A191-01	TCGA-EE-A2M8-06A-12D-A194-01	TCGA-EE-A2ME-06A-11D-A191-01	TCGA-EE-A2MG-06A-11D-A191-01	TCGA-EE-A2MH-06A-11D-A191-01	TCGA-EE-A2MK-06A-11D-A194-01	TCGA-EE-A2MP-06A-11D-A191-01	TCGA-EE-A3AB-06A-11D-A194-01	TCGA-EE-A3AD-06A-11D-A194-01	TCGA-EE-A3AF-06A-11D-A194-01	TCGA-EE-A3AG-06A-31D-A194-01	TCGA-EE-A3AH-06A-11D-A194-01	TCGA-EE-A3J3-06A-11D-A20B-01	TCGA-EE-A3J4-06A-11D-A20B-01	TCGA-EE-A3JB-06A-11D-A219-01	TCGA-EE-A3JE-06A-11D-A20B-01	TCGA-ER-A193-06A-12D-A191-01	TCGA-ER-A198-06A-11D-A194-01	TCGA-ER-A19B-06A-11D-A194-01	TCGA-ER-A19C-06A-11D-A194-01	TCGA-ER-A19E-06A-11D-A191-01	TCGA-ER-A19G-06A-11D-A194-01	TCGA-ER-A19H-06A-12D-A194-01	TCGA-ER-A19J-06A-11D-A194-01	TCGA-ER-A19O-06A-11D-A191-01	TCGA-ER-A19P-06A-11D-A194-01	TCGA-ER-A19Q-06A-11D-A191-01	TCGA-ER-A19S-06A-11D-A194-01	TCGA-ER-A2NC-06A-11D-A191-01	TCGA-ER-A2ND-06A-11D-A194-01	TCGA-ER-A2NG-06A-11D-A194-01	TCGA-FS-A1YX-06A-11D-A191-01	TCGA-FS-A1YY-06A-11D-A191-01	TCGA-FS-A1Z7-06A-11D-A191-01	TCGA-FS-A1ZC-06A-11D-A191-01	TCGA-FS-A1ZD-06A-11D-A191-01	TCGA-FS-A1ZF-06A-12D-A191-01	TCGA-FS-A1ZH-06A-11D-A191-01	TCGA-FS-A1ZM-06A-12D-A191-01	TCGA-FS-A1ZR-06A-21D-A191-01	TCGA-FS-A1ZS-06A-12D-A191-01	TCGA-GN-A262-06A-11D-A194-01	TCGA-GN-A265-06A-21D-A191-01	
Amplification Peak  1	1q43    	chr1:233951521-249250621(probes 120419:129200)	chr1:243515654-243686912(probes 127100:127228)	chr1:233699001-249250621(probes 120213:129200)	0.0074517	  0.0074517		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	1	0	0	0	1	1	1	0	0	1	0	0	0	0	1	0	1	1	1	1	0	2	0	1	1	0	1	1	1	0	1	0	1	0	1	0	1	0	0	1	0	1	1	1	1	1	2	1	1	1	0	0	0	1	0	0	0	0	0	1	1	1	0	1	1	1	0	0	0	0	0	0	1	0	1	1	0	0	1	2	0	0	1	0	1	0	0	2	2	1	1	0	0	0	0	0	
Amplification Peak  2	2q36.2  	chr2:225481923-226025854(probes 250573:250937)	chr2:225795673-225817667(probes 250764:250781)	chr2:225482137-226026325(probes 250574:250939)	0.063941	   0.063941		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	1	0	1	0	0	0	2	1	0	0	1	0	1	0	0	0	1	0	0	0	0	2	0	0	1	0	0	0	0	0	1	1	1	1	0	0	0	2	1	0	0	0	1	0	1	1	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	
Amplification Peak  3	3p13    	chr3:69742187-70087344(probes 300337:300646)    	chr3:69811572-69887441(probes 300405:300489)    	chr3:59705136-79585249(probes 293981:306190)    	2.5245e-08	 2.5245e-08		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	2	2	0	0	1	0	2	0	0	0	1	0	0	0	1	1	0	1	0	0	0	2	0	0	0	1	2	0	0	1	1	0	0	1	1	0	0	0	0	2	1	0	1	1	0	0	0	1	0	0	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	
Amplification Peak  4	5p15.33 	chr5:1-1287702(probes 469775:469825)               	chr5:1-986552(probes 469775:469802)                 	chr5:1-1325766(probes 469775:469842)               	0.042211	   0.042211		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	2	0	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	2	2	0	0	0	0	1	0	1	0	0	1	0	0	0	1	0	2	0	0	1	0	1	0	2	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	1	1	0	2	1	1	0	0	0	0	0	2	1	0	2	0	0	1	1	1	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	1	
Amplification Peak  5	6p25.3  	chr6:1-43038705(probes 570326:595795)            	chr6:1-1582558(probes 570326:570815)              	chr6:1-5228487(probes 570326:573346)              	0.097778	   0.097778		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	1	1	2	0	1	0	0	1	0	0	0	0	1	1	0	0	1	0	1	1	1	0	0	0	2	1	1	0	0	0	0	0	1	1	0	0	2	1	0	0	0	0	1	0	0	0	1	0	1	1	2	0	1	1	0	1	0	0	2	1	0	1	1	1	0	2	1	0	0	0	0	0	2	2	0	0	1	1	1	1	1	1	0	0	1	0	0	1	0	0	1	2	1	0	0	0	
Amplification Peak  6	7q21.11 	chr7:57921705-106117961(probes 700256:720642)  	chr7:83568747-83584372(probes 709665:709673)    	chr7:83568747-83594122(probes 709665:709683)    	0.03645	    0.21774		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	1	1	0	1	0	0	1	1	1	1	0	1	1	2	0	0	1	1	2	1	1	2	1	1	1	1	0	2	1	1	2	1	2	1	1	1	1	0	2	2	1	1	0	1	1	2	2	2	1	1	0	0	0	0	2	1	0	0	0	1	2	0	2	0	1	1	1	1	2	1	0	0	1	2	1	2	1	1	2	1	1	0	1	0	1	0	1	0	2	1	2	2	0	2	1	1	0	1	
Amplification Peak  7	7q34    	chr7:140360645-140746356(probes 739178:739481)	chr7:140594086-140666819(probes 739390:739438)	chr7:117682930-159138663(probes 726702:748222)	6.9714e-06	 1.3363e-05		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	1	0	1	2	1	1	1	1	1	0	1	1	2	2	0	2	1	2	1	1	2	1	1	1	1	2	2	1	1	2	1	2	1	1	1	1	0	2	2	1	1	2	1	1	2	2	2	1	1	1	0	1	0	2	1	1	0	0	1	2	0	2	0	1	1	1	1	2	1	0	1	1	2	1	2	1	1	2	2	1	1	1	0	1	0	1	0	2	1	1	2	1	2	1	1	0	1	
Amplification Peak  8	8q21.13 	chr8:78718362-84367165(probes 791013:794007)    	chr8:80975490-80988804(probes 792214:792221)    	chr8:80975490-80993668(probes 792214:792224)    	0.23047	    0.23407		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	1	0	1	0	1	0	1	1	0	0	2	2	1	2	1	0	1	1	1	1	1	0	0	1	0	1	1	1	0	0	0	1	0	1	0	1	0	0	0	1	1	1	0	0	1	0	0	0	1	1	1	0	0	1	1	1	0	0	2	0	0	1	2	0	1	0	1	2	0	0	0	0	0	1	0	1	1	2	0	0	2	1	1	1	0	1	1	1	1	1	0	0	1	1	1	0	1	
Amplification Peak  9	8q24.21 	chr8:96826502-146364022(probes 800918:829801)  	chr8:128653002-128809606(probes 819761:819880)	chr8:119744187-132886442(probes 813764:822630)	0.041071	   0.096414		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	1	0	1	0	1	0	1	0	0	0	2	2	1	0	2	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	0	1	0	1	0	1	0	0	0	1	1	1	0	0	1	0	0	0	1	1	1	0	0	2	1	1	0	0	1	0	1	1	2	0	2	0	1	2	0	0	0	1	0	1	0	1	2	2	2	0	2	1	1	1	0	1	1	1	1	2	0	0	1	1	1	0	0	
Amplification Peak 10	12q15   	chr12:67369366-69374775(probes 1091309:1092792)	chr12:67459732-68175872(probes 1091380:1091884)	chr12:67372407-69375204(probes 1091310:1092794)	0.02034	    0.02034		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	1	0	1	0	0	0	0	0	0	0	1	0	2	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	
Amplification Peak 11	15q26.2 	chr15:96964574-97231548(probes 1277912:1278066)	chr15:96967336-97098673(probes 1277913:1277987)	chr15:96842270-97235622(probes 1277837:1278068)	0.037896	   0.037896		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	1	0	0	1	1	1	0	0	1	0	1	1	0	0	1	1	0	0	2	1	0	1	0	0	0	0	0	1	0	2	0	1	1	0	1	1	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	1	1	0	0	0	0	0	1	1	0	1	1	0	1	0	0	0	2	0	0	2	0	0	0	0	0	1	0	1	0	0	0	0	0	1	1	1	0	0	0	0	0	0	1	
Amplification Peak 12	17q24.3 	chr17:45634386-81195210(probes 1339803:1358531)	chr17:70265862-70354608(probes 1353980:1354062)	chr17:67931810-74561949(probes 1352175:1355919)	0.095607	   0.095607		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	0	0	1	1	0	0	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	1	0	0	1	0	0	0	0	1	0	1	0	1	0	0	1	1	0	1	0	1	0	1	0	0	1	1	0	1	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	1	0	0	1	0	0	0	2	1	0	1	0	1	0	1	
Amplification Peak 13	19p13.2 	chr19:7296453-7398264(probes 1403242:1403249)    	chr19:7300056-7397014(probes 1403243:1403248)    	chr19:7300056-7405648(probes 1403243:1403251)    	0.032586	   0.032586		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	2	0	1	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	1	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	1	0	2	0	0	0	0	0	1	0	0	1	2	1	1	0	0	1	0	1	0	0	
Amplification Peak 14	22q13.32	chr22:46335313-51304566(probes 1497803:1500006)	chr22:48954289-48960611(probes 1499749:1499751)	chr22:48382101-51304566(probes 1499183:1500006)	0.10945	    0.10945		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	1	0	1	0	1	0	1	0	0	0	0	1	0	0	0	0	0	1	2	0	1	1	1	1	0	1	0	0	0	1	1	1	0	2	0	0	0	1	0	0	0	0	2	0	0	1	2	1	0	1	0	0	0	2	1	0	2	0	0	0	0	1	1	0	1	0	0	0	1	0	0	0	2	2	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	1	1	0	1	0	1	
Deletion Peak  1	1p36.31 	chr1:1-13739155(probes 1:5331)                       	chr1:5619360-5625689(probes 1560:1561)                	chr1:1-6905905(probes 1:2261)                         	0.00086889	  0.0069719		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	1	1	0	0	1	0	1	1	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	1	1	1	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	1	0	1	1	1	0	0	0	0	0	0	0	0	0	
Deletion Peak  2	1p22.1  	chr1:76538397-114523464(probes 41505:64029)        	chr1:93289794-93310876(probes 51762:51770)          	chr1:76136546-114501967(probes 41209:64017)        	0.0016279	  0.0025474		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	1	0	1	0	0	1	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	1	0	0	1	1	1	1	1	0	1	0	1	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	1	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	1	1	1	0	1	0	0	0	0	0	0	1	1	0	
Deletion Peak  3	2q37.3  	chr2:234677660-243199373(probes 255721:260560)    	chr2:239748105-240337579(probes 259172:259341)    	chr2:236534202-243199373(probes 257099:260560)    	0.0059136	  0.0059136		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	0	1	1	1	0	0	0	0	1	0	1	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	1	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	1	0	1	0	0	1	1	0	0	1	0	0	0	0	0	1	0	0	0	1	0	1	1	0	0	0	0	0	1	0	0	0	0	
Deletion Peak  4	3p26.1  	chr3:1-81811783(probes 260561:307448)                	chr3:8660144-8701688(probes 264210:264236)            	chr3:8650633-8772088(probes 264209:264256)            	0.084199	   0.087198		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	1	0	1	0	1	0	1	0	1	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	1	0	1	1	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	1	0	0	0	0	1	0	1	1	1	0	0	0	0	0	0	1	0	0	1	0	
Deletion Peak  5	3q27.2  	chr3:109128554-198022430(probes 319721:366985)    	chr3:185676351-185704890(probes 360502:360514)    	chr3:185683329-185696138(probes 360509:360510)    	0.2092	    0.20446		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	1	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	
Deletion Peak  6	4p16.3  	chr4:1-6915319(probes 366986:370119)                  	chr4:3576499-3624138(probes 367984:367993)            	chr4:3582639-3627605(probes 367987:367997)            	0.071319	   0.073957		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	1	1	0	1	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	1	0	1	1	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	1	0	1	0	
Deletion Peak  7	4q34.3  	chr4:178911874-183060693(probes 465226:467355)    	chr4:181521852-182082855(probes 466564:466567)    	chr4:180598680-191154276(probes 465902:469774)    	7.0015e-05	 7.0015e-05		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	1	1	0	0	0	0	1	0	1	1	1	0	1	0	1	0	1	0	0	1	0	1	1	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	1	1	0	1	0	1	0	0	0	0	0	0	1	0	1	1	0	0	0	1	0	1	0	0	0	0	0	0	
Deletion Peak  8	5q11.2  	chr5:1-180915260(probes 469775:570325)               	chr5:58260298-59787985(probes 500866:501810)        	chr5:58883803-58885578(probes 501339:501340)        	0.082369	    0.23008		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	0	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	1	1	1	0	1	0	0	1	1	0	1	0	1	0	0	0	1	0	1	1	0	1	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	1	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	
Deletion Peak  9	5q31.3  	chr5:133558221-158916359(probes 541730:557380)    	chr5:142667584-142788710(probes 546844:546891)    	chr5:136460856-157411929(probes 543550:556384)    	0.0063705	  0.0093291		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	0	0	1	1	1	0	0	0	0	1	1	0	0	0	0	0	1	1	1	1	1	0	0	1	1	1	1	0	1	0	0	0	1	0	1	1	0	1	1	0	0	0	1	1	0	0	1	0	1	0	0	0	1	0	0	1	1	1	0	0	1	0	0	1	0	0	0	1	0	0	0	1	0	0	0	1	0	0	1	0	1	0	0	1	0	1	0	1	0	0	1	0	
Deletion Peak 10	6q25.2  	chr6:101844516-171115067(probes 625993:666860)    	chr6:154722218-154835181(probes 658090:658172)    	chr6:102799470-171115067(probes 626527:666860)    	8.0176e-05	  0.0060067		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	0	1	0	0	1	0	0	1	1	1	1	1	0	0	1	0	1	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	1	0	1	0	1	1	1	0	0	0	1	1	1	1	1	1	1	0	1	1	1	0	0	0	1	0	1	1	1	1	1	1	1	1	1	0	1	1	0	0	1	1	1	1	1	1	1	0	0	
Deletion Peak 11	6q27    	chr6:127756786-171115067(probes 640698:666860)    	chr6:169855301-170106708(probes 666440:666608)    	chr6:102799470-171115067(probes 626527:666860)    	2.9564e-05	   0.016207		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	0	1	0	0	1	0	0	1	1	1	1	1	0	0	1	0	1	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	1	0	1	1	1	0	1	1	0	1	1	1	1	1	0	1	0	1	1	1	0	0	0	1	1	1	1	1	1	1	0	1	1	1	1	0	1	1	0	0	1	1	1	1	1	1	1	0	0	1	1	0	0	1	1	1	1	1	1	1	0	0	
Deletion Peak 12	9p21.3  	chr9:21959052-21997722(probes 843294:843307)        	chr9:21959052-21997722(probes 843294:843307)        	chr9:19463399-30829554(probes 841490:848210)        	5.3742e-88	 5.3742e-88		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	0	0	0	1	0	0	0	0	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	0	1	0	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	0	1	1	0	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	
Deletion Peak 13	9q21.2  	chr9:38614979-88357924(probes 852999:865278)        	chr9:79220175-79522032(probes 858879:859145)        	chr9:79375311-79381290(probes 859013:859014)        	0.088185	   0.087198		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	1	1	0	0	0	0	0	0	1	0	1	1	1	0	0	1	1	1	1	0	1	0	0	1	1	1	0	1	1	0	1	0	1	1	1	0	0	0	0	0	1	0	1	0	1	1	0	1	0	0	1	0	1	0	0	1	1	1	0	1	1	1	0	1	0	1	1	1	0	1	1	0	0	1	0	0	1	1	0	0	0	0	0	1	0	1	0	1	1	1	1	1	1	1	
Deletion Peak 14	10q21.1 	chr10:38987170-66592074(probes 923965:936219)      	chr10:52831005-54061437(probes 927620:928586)      	chr10:52930316-54140902(probes 927701:928630)      	0.020088	   0.047185		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	1	0	0	0	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	0	1	0	0	1	1	1	1	1	1	1	0	0	1	0	1	0	0	0	1	1	1	1	1	1	1	1	0	1	0	0	1	1	1	0	1	1	1	0	1	1	1	0	1	1	1	1	1	1	0	0	1	1	0	1	0	0	1	0	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	0	
Deletion Peak 15	10q23.31	chr10:89617158-90034038(probes 950060:950489)      	chr10:89617402-89735596(probes 950061:950248)      	chr10:89440002-90295429(probes 949935:950625)      	5.6847e-08	 5.2903e-07		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	1	0	0	0	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	0	1	1	1	0	0	0	1	1	1	1	1	1	1	1	0	1	0	0	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	0	1	0	0	1	0	1	1	0	1	0	1	1	1	1	1	1	1	1	0	1	0	
Deletion Peak 16	11q22.3 	chr11:103906053-128463796(probes 1035863:1052489)	chr11:108338341-108388137(probes 1038334:1038344)	chr11:92784204-135006516(probes 1028839:1056042)  	6.833e-05	  6.833e-05		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	1	1	0	1	0	0	1	0	0	1	0	0	0	1	1	0	0	1	0	1	1	1	1	0	1	0	0	1	0	1	1	0	1	0	1	1	1	1	1	0	1	1	1	1	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	1	1	0	1	1	0	0	1	0	0	1	1	1	0	0	1	1	
Deletion Peak 17	12q24.32	chr12:69750840-133851895(probes 1093038:1130020)  	chr12:126922270-127363489(probes 1127714:1127822)	chr12:126779776-127532518(probes 1127585:1127975)	0.079884	   0.081818		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	0	0	0	1	0	0	1	1	0	0	0	1	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	1	1	0	0	0	0	
Deletion Peak 18	14q31.1 	chr14:78263652-107349540(probes 1219154:1236162)  	chr14:79744218-80334035(probes 1220278:1220684)    	chr14:80073125-80074798(probes 1220482:1220483)    	0.039393	   0.038428		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	1	0	1	0	0	0	0	1	1	1	0	1	1	1	0	0	0	0	0	1	1	0	1	1	0	0	1	0	1	1	1	0	0	0	0	1	0	1	0	1	0	1	1	0	0	1	1	1	0	0	0	
Deletion Peak 19	15q21.1 	chr15:36216473-54921359(probes 1241613:1252763)    	chr15:44823263-44859672(probes 1246476:1246490)    	chr15:37042933-54540556(probes 1242230:1252497)    	0.0015584	  0.0015584		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	1	0	0	0	0	1	0	0	1	1	1	0	1	1	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	
Deletion Peak 20	16q23.3 	chr16:73418707-90354753(probes 1310761:1321528)    	chr16:82658729-83217258(probes 1317818:1318181)    	chr16:82896341-82896695(probes 1318000:1318001)    	0.052187	   0.051275		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	1	0	1	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	1	0	1	0	0	0	1	0	0	1	0	1	0	0	0	0	0	1	0	1	0	1	1	0	0	0	0	0	0	1	0	0	0	0	1	0	
Deletion Peak 21	17q12   	chr17:13971526-61507293(probes 1328891:1348538)    	chr17:36824189-37386898(probes 1336300:1336558)    	chr17:36730242-37459547(probes 1336252:1336589)    	0.13922	    0.13987		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	1	1	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	1	0	0	1	0	0	0	1	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	1	1	0	0	0	1	0	
Deletion Peak 22	19p13.3 	chr19:1-3814391(probes 1401217:1402048)               	chr19:1107036-1186532(probes 1401366:1401381)        	chr19:1118551-1201083(probes 1401369:1401385)        	0.081818	   0.081818		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	1	0	0	1	1	1	1	0	0	0	0	0	1	0	1	0	1	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	1	0	0	1	1	1	0	0	0	0	1	0	0	1	0	1	1	0	0	1	0	0	0	1	1	0	1	1	0	0	0	0	1	1	1	0	0	0	1	0	
Amplification Peak  1 - CN values	1q43    	chr1:233951521-249250621(probes 120419:129200)	chr1:243515654-243686912(probes 127100:127228)	chr1:233699001-249250621(probes 120213:129200)	0.0074517	  0.0074517		Actual Copy Change Given	0.0083351	0.0019418	0.00041593	0.73132	-0.15664	0.043519	0.0047687	0.38949	0.41927	0.67437	-0.069867	0.009378	0.13465	0.0024271	-0.022881	-0.0034627	0.054346	0.77329	0	0.75349	0.72943	0.41301	0.76388	-0.36454	1.383	0.088403	0.64433	0.25006	0.084787	0.84801	0.53081	0.88526	0.063652	0.15912	-0.15994	0.3933	-0.013127	0.87156	-0.66753	0.5231	-0.016277	0.052952	0.4958	0.0018618	0.40227	0.22304	0.23184	0.24187	0.50359	1.0546	0.23117	0.31354	0.81649	0.0027989	0	-0.12382	0.83766	0.021183	0.0011093	-0.077114	0.0023581	0.0016178	0.10191	0.37004	0.46132	0.0098669	0.53274	0.82333	0.16049	0.0098153	0.023706	0.029641	-0.28527	-0.013412	-0.015759	0.61843	-0.076678	0.67376	0.52013	0	0	0.39214	1.1344	0.025488	0.0011093	0.29846	-0.48449	0.17226	0.0079175	0.010146	1.2259	1.9318	0.83145	0.23132	0.016665	0.0027745	-0.0020368	0.019083	0.081033	
Amplification Peak  2 - CN values	2q36.2  	chr2:225481923-226025854(probes 250573:250937)	chr2:225795673-225817667(probes 250764:250781)	chr2:225482137-226026325(probes 250574:250939)	0.063941	   0.063941		Actual Copy Change Given	-0.005814	-0.0087846	0.34892	-0.0015243	0.36383	-0.26266	0.00046559	0.00597	2.5271	0.49061	-0.12875	0.0025721	0.35104	-0.028013	0.36805	0.0040243	-0.74024	0.013074	0.12653	-0.03196	-0.0047079	-0.082535	-0.16307	1.3069	-0.011749	-0.032587	0.23241	-0.47247	0.018523	-0.0094659	0.0041632	0.00083195	0.20195	0.28438	0.11749	0.31263	0.0081959	-0.27862	-0.63019	3.6569	0.41496	-0.36431	-0.015116	-0.069578	0.15636	-0.43534	0.2523	0.44051	1.4129	0.0032144	0	-0.031223	-0.0085766	-0.00041585	-0.074945	0.26028	0.36543	-0.0043418	-0.024524	0.039649	-0.097495	-0.53839	0.00097064	0.07988	-0.031831	-0.76252	0.72338	0	-0.24594	-0.015329	0.35715	-0.21673	0.029325	-0.0041988	0.43361	-0.51063	0.33205	0.4701	-0.057116	0.022304	0.0072217	-0.12343	0.015028	0.012892	0.35304	-0.38597	0.047694	-0.25986	-0.67742	0.0081959	-0.0013161	0.46519	-0.015342	0.013492	0.25101	-0.0267	-0.00069303	0.0058309	0.021183	
Amplification Peak  3 - CN values	3p13    	chr3:69742187-70087344(probes 300337:300646)    	chr3:69811572-69887441(probes 300405:300489)    	chr3:59705136-79585249(probes 293981:306190)    	2.5245e-08	 2.5245e-08		Actual Copy Change Given	-0.50505	-0.60429	-0.0019399	-0.13587	3.6569	3.6569	-0.40823	0.003191	0.33978	0.0036076	3.6569	0.0033462	-0.32878	-0.00090132	0.41396	0.010564	-0.77375	-0.79695	0.118	0.55861	-0.0019399	0.27333	-0.005546	0.034959	0.021323	1.7231	0.0029133	0.0043021	-0.46249	0.48329	2.9968	-0.43322	0.019783	0.83215	0.18609	-0.35019	0.050108	0.12155	0.46024	-0.61431	0.017544	-0.029857	-0.0081982	3.6569	0.61854	-0.13324	0.46038	0.25131	0.010703	-0.0046845	0.083198	0.36904	0.023706	-0.0018014	0.21223	2.5767	0	-0.10145	0.0026357	0.049285	0.033127	0.01219	0.23535	0	0	0.001803	-0.51897	0.016912	-0.2289	0.0029133	-0.38705	0.028376	0.034818	0.029421	0.033127	0	0.045566	0.47387	0.047552	0.040609	0.00013863	-0.00027724	0.0020805	0.10085	0.0040243	-0.52842	1.3341	-0.63396	0	-0.00069303	0.036653	-0.014277	0.007368	0.013074	-0.35602	0.0056919	0.0062441	0.097542	2.6467	
Amplification Peak  4 - CN values	5p15.33 	chr5:1-1287702(probes 469775:469825)               	chr5:1-986552(probes 469775:469802)                 	chr5:1-1325766(probes 469775:469842)               	0.042211	   0.042211		Actual Copy Change Given	0.0083351	0.65369	-0.0087146	0	2.5552	-0.018379	0.010753	-0.00013862	-0.089865	-0.27248	-0.10487	0.54683	0.35528	0.38891	-0.029584	0.0022193	0.14853	0.055088	0.012795	-0.009736	0.00597	-0.019314	1.5783	1.012	0.017824	-0.15157	-0.0015243	0.04883	0.50533	0.00090902	0.14043	-0.0053992	0.02525	0.76197	-0.0015872	-0.37517	0.078871	0.12702	-0.75866	1.0906	0	-0.38347	0.3579	-0.0074746	0.10818	-0.11267	0.92128	0.22993	-0.0020784	-0.11441	-0.30475	0	0.023987	-0.0060904	0.021183	0.55354	0.26618	0.013353	-0.0011087	0.050422	0.029977	0.00078549	0.5617	0.10687	0.87534	-0.0085766	0.95898	0.87667	0.22808	-0.021235	-0.38347	0.033244	0.024285	-0.083508	1.3695	0.12299	-0.0026322	1.2645	0.0036076	-0.020549	0.47753	0.18601	0.59728	0.057753	-0.0083834	0.53567	-0.51273	0.15517	0.83785	-0.020687	-0.036129	-0.56485	0.016171	0.011121	-0.38737	-0.0078883	0.020623	-0.97623	0.10799	
Amplification Peak  5 - CN values	6p25.3  	chr6:1-43038705(probes 570326:595795)            	chr6:1-1582558(probes 570326:570815)              	chr6:1-5228487(probes 570326:573346)              	0.097778	   0.097778		Actual Copy Change Given	0.0055529	-0.012151	-0.011335	0.37526	0.40344	1.601	-0.40701	0.54083	-0.095286	-0.0038779	0.75605	0.003835	-0.36297	-0.0060217	-0.35531	0.40561	0.4132	-0.010779	-0.053611	0.38446	-0.0073339	0.31675	0.45719	0.36411	0.013353	0.05637	0	0.92351	0.5142	0.45897	0	0.0065262	-0.6385	-0.15744	-0.0023349	0.35746	0.17287	0.090045	-0.013402	1.5754	0.89694	0.06208	-0.024798	0.020542	0.098997	0.68821	-0.079476	-0.57407	-0.0020784	0.54562	0.053094	0.46707	0.81532	0.96966	-0.11926	0.21745	0.26863	0.001803	0.14946	0.014881	0.019223	1.1086	0.57148	0.093911	0.44957	0.77252	0.64194	0.023566	1.0565	0.87727	-0.0083005	-0.01502	0.014749	0.0168	-0.51223	0.98087	1.2848	-0.005024	0.027919	0.78331	0.49389	0.27058	0.60834	0.51903	0.49459	0.0045349	-0.060748	0.20045	-0.00013862	0	0.63554	-0.03095	0.032307	0.63627	2.0485	0.80733	-0.38593	0.015587	0	
Amplification Peak  6 - CN values	7q21.11 	chr7:57921705-106117961(probes 700256:720642)  	chr7:83568747-83584372(probes 709665:709673)    	chr7:83568747-83594122(probes 709665:709683)    	0.03645	    0.21774		Actual Copy Change Given	1.0113	0.61426	0.4789	-0.0039392	0.33394	-0.61241	0.0057417	0.15771	0.76628	0.52372	0.71848	0	0.40822	0.39338	1.1368	0.012516	0	0.76102	0.43378	1.5034	0.75166	0.31033	1.6408	0.29676	0.67382	0.20541	0.88766	0.0040243	0.94874	0.45272	0.55691	0.94058	0.62315	1.3438	0.55124	0.3264	0.64396	0.11028	-0.0085766	1.3741	1.7769	0.61244	0.80811	0.0033887	0.1851	0.78127	1.0166	0.98908	0.97378	0.52839	0.47924	-0.038442	0.017404	0.00015537	-0.017529	2.1167	0.56561	0.014872	0.092605	0.050655	0.76044	1.0645	-0.18244	1.8201	0.018426	0.72531	0.84768	0.82314	0.50863	1.6341	0.40277	0.052987	0.026233	0.73353	0.95693	0.13908	1.2049	0.44201	0.48716	1.5157	0.48251	0.13155	-0.0059522	0.48229	-0.0055375	0.5199	0.038771	0.18665	0.0002218	1.1455	0.63116	3.6569	1.6568	-0.30694	0.93706	0.39662	0.39911	0.04586	0.16814	
Amplification Peak  7 - CN values	7q34    	chr7:140360645-140746356(probes 739178:739481)	chr7:140594086-140666819(probes 739390:739438)	chr7:117682930-159138663(probes 726702:748222)	6.9714e-06	 1.3363e-05		Actual Copy Change Given	-0.00055444	0.61426	0.4789	-0.0039392	0.39197	1.1136	0.39419	0.15771	0.76628	0.52643	0.71848	0	0.40822	0.39338	2.6095	3.6569	0.040962	1.4803	0.43378	1.4915	0.75166	0.31033	1.6408	0.29676	0.67382	0.85462	0.88366	1.3246	0.94874	0.45272	0.55691	1.667	0.63297	1.3438	0.55576	0.25981	0.64396	0.10153	0.015447	1.3741	1.7448	0.61244	0.76472	1.7533	0.1851	0.78127	1.0166	0.98908	0.96987	0.52839	0.47924	0.68794	-0.019704	0.37347	-0.027472	1.8961	0.59368	0.47855	0.092605	0.050655	0.75521	1.0645	-0.18244	1.8185	0.01598	0.72531	0.86394	0.82314	0.49857	1.6341	0.38844	0.052987	0.60593	0.7474	0.92239	0.13658	2.0331	0.42194	0.47564	1.4992	0.95878	0.13155	0.59458	0.48229	-0.017666	0.51752	0.038771	0.20442	0.0002218	1.1455	0.63116	0.47032	3.1029	0.32125	0.91962	0.38326	0.3692	0.036793	0.16814	
Amplification Peak  8 - CN values	8q21.13 	chr8:78718362-84367165(probes 791013:794007)    	chr8:80975490-80988804(probes 792214:792221)    	chr8:80975490-80993668(probes 792214:792224)    	0.23047	    0.23407		Actual Copy Change Given	0.97997	0.021323	0.47452	0.083416	0.41379	-0.0090165	0.37683	-0.00055444	0.6596	0.27269	-0.04726	-0.004372	0.92655	1.0784	0.34404	1.3499	0.11557	-0.0076101	0.49013	0.37588	0.73435	0.29907	0.73237	0.04259	0.0048579	0.13554	-0.26083	0.43176	0.48682	0.45608	0.010022	0.0282	0	0.56881	-0.00013533	0.4215	0	0.11973	-0.0083109	-0.011473	-0.0070576	0.63372	0.8122	0.86045	-0.1499	0.075049	0.62679	-0.028366	-0.0078863	-0.01269	0.1625	0.43017	0.81396	-0.00096547	-0.099999	0.58614	0.27647	0.20921	-0.0026322	0.053771	3.6569	0.0091238	-0.12655	0.70251	1.2844	-0.0023553	0.24311	0.0079175	0.59134	1.1143	0.016286	0.029079	-0.0047079	-0.012482	0.020343	0.86433	-0.19604	0.43508	0.49545	3.3269	-0.0016629	-0.090229	1.0829	0.14841	0.69055	0.52707	0.022725	0.2708	0.66493	0.56205	0.6199	0.4789	0.012541	0.012097	0.24035	0.76485	0.56756	0.032281	0.18904	
Amplification Peak  9 - CN values	8q24.21 	chr8:96826502-146364022(probes 800918:829801)  	chr8:128653002-128809606(probes 819761:819880)	chr8:119744187-132886442(probes 813764:822630)	0.041071	   0.096414		Actual Copy Change Given	0.98825	0.017969	0.48975	0.083416	0.41379	-0.0090165	0.38623	-0.00055444	0.6596	0.020343	-0.04726	0.0022193	0.92655	1.0955	0.34404	-0.0042929	0.98951	0.013911	0.49044	0.39041	0.74233	0.32237	0.73237	0.04259	0.0048579	0.13554	0.45803	0.85462	0.48682	0.45608	0.010022	0.027807	0.02806	0.56881	-0.00013533	0.41865	0	0.11761	-0.0083109	-0.0027707	-0.0070576	0.62118	0.80926	0.88674	-0.1499	0.075049	0.6277	0	-0.0078863	-0.01269	0.1625	0.43017	0.81396	0.00069327	-0.099999	3.6569	0.27647	0.20921	0	0.053771	0.27669	0.0091238	0.17437	0.74043	1.2846	-0.0023553	0.98266	0.0079175	0.60449	1.2331	0.016286	0.029079	-0.0047079	0.76702	0.016006	0.84297	-0.19604	0.43508	0.97408	3.3269	0.9596	-0.090229	1.0655	0.14841	0.69055	0.53093	0.022725	0.2708	0.66493	0.56205	0.63956	0.96884	0.012541	0.012097	0.25179	0.79007	0.56756	0.032281	-0.054902	
Amplification Peak 10 - CN values	12q15   	chr12:67369366-69374775(probes 1091309:1092792)	chr12:67459732-68175872(probes 1091380:1091884)	chr12:67372407-69375204(probes 1091310:1092794)	0.02034	    0.02034		Actual Copy Change Given	0.0033299	0.0019418	0.32834	-0.0053992	0.37743	-0.0050103	0.013403	0	0	0.0016642	0.021183	0.011539	0.23024	-0.0038091	2.9829	-0.0077482	0.12329	-0.0035183	0.0027369	-0.045689	0	0.14132	0	0.028481	0.0062481	0.12373	0.00097064	-0.0076946	0.004719	0.00049299	0.0058877	-0.0010658	0.032704	0.33918	0.0001505	0.35668	-0.0023553	-0.30713	-0.032774	-0.013402	0.0024969	0.063509	0.010564	0.065698	0	-0.26823	-0.0018014	-0.0066432	0.43783	0.45567	0.0282	0.27335	-0.013801	-0.38392	0.12933	0.024689	-0.033349	0.021861	0.0040243	-0.25171	-0.014503	-0.54081	-0.20137	0.098415	-0.50034	-0.00027724	-0.0085766	0.0063871	-0.20809	0.0094491	0.019026	0.092206	3.6569	0.023802	0.46974	0.086088	-0.43539	0.012872	0.49753	-0.0091286	0.0034687	0.034959	0.0054139	-0.14596	-0.0034627	0.019177	0.03369	-0.63169	-0.0018014	-0.0022168	-0.0029535	-0.019726	0.007247	-0.29236	3.6569	0.0032207	-0.075745	0.011679	-0.026125	
Amplification Peak 11 - CN values	15q26.2 	chr15:96964574-97231548(probes 1277912:1278066)	chr15:96967336-97098673(probes 1277913:1277987)	chr15:96842270-97235622(probes 1277837:1278068)	0.037896	   0.037896		Actual Copy Change Given	0.015866	0.60557	-0.047934	0.010098	0.29215	0.0085875	-0.0067318	0.51176	0.30105	0.24638	-0.023703	0.017824	0.1619	0.012864	0.37719	0.43176	-0.068195	0.038771	0.4509	0.36372	0.013074	0.07815	1.026	0.35186	-0.037898	0.82431	-0.0059522	-0.02151	0.040044	0.0036848	0.023145	0.36707	-0.26673	3.6569	0.017061	0.2355	0.61262	0.053997	0.14548	0.52136	-0.01849	0.036512	-0.056307	0.041801	0.09304	-0.3206	0.28786	0.49372	-0.0011087	-0.035225	-0.0081624	0.30889	-0.019418	-0.059135	-0.23361	0.56116	0.25699	0.023426	0.0019418	0.066832	-0.12499	-0.54062	0.17862	0.10703	0.05072	0.74594	0.16745	0.012202	0.62279	0.029466	-0.0066432	-0.23175	1.1136	-0.0032909	0.018243	2.6239	-0.1736	-0.0041941	0.034959	-0.019006	-0.014503	0.19117	0.012697	0.13727	-0.00041585	0	0	-0.67122	0.025531	0.61262	0.61879	0.44528	0.025697	0	-0.60833	0.030451	-0.021373	-0.0059522	0.47632	
Amplification Peak 12 - CN values	17q24.3 	chr17:45634386-81195210(probes 1339803:1358531)	chr17:70265862-70354608(probes 1353980:1354062)	chr17:67931810-74561949(probes 1352175:1355919)	0.095607	   0.095607		Actual Copy Change Given	0.49268	-0.037218	-0.017391	0.0070826	0.30425	0.88342	-0.018716	-0.0095426	-0.079244	0.73397	-0.62159	0.030169	-0.21763	0.00326	-0.39969	0.36861	0.084569	-0.0056757	-0.00069303	0.35146	0.71528	0.083198	0.077133	0.58811	-0.060076	-0.53409	0.44952	-0.0023553	-0.489	-0.00707	-0.27105	0.36068	-0.26288	0.10497	0.0081328	0.24591	-0.035993	0.021791	0.65921	0.49614	-0.032314	0.15876	-0.11704	0.14763	0.078727	0.51986	-0.018141	-0.032996	0.489	0.50085	0.020763	0.59332	-0.03966	-0.37954	-0.14542	-0.57398	0.24435	0.021183	0.0016642	-0.23126	0.03863	-0.00032368	0.91663	0.060222	0.019126	-0.010922	-0.041838	-0.028765	0.083198	0.050534	-0.42789	0.02332	-0.28932	-0.003507	-0.039801	0.12064	0.62916	-0.025385	0.039902	-0.033814	-0.015054	-0.0067813	0.58256	-0.18059	0.52853	-0.025801	-0.031086	0.15861	0.018103	0.013632	-0.046989	2.1497	0.85941	-0.32251	0.27659	0.020607	0.28977	-0.050911	0.18798	
Amplification Peak 13 - CN values	19p13.2 	chr19:7296453-7398264(probes 1403242:1403249)    	chr19:7300056-7397014(probes 1403243:1403248)    	chr19:7300056-7405648(probes 1403243:1403251)    	0.032586	   0.032586		Actual Copy Change Given	-0.042374	0.4811	0.29596	-0.0033243	-0.69776	0.017098	-0.045857	-0.017529	0.39874	-0.13212	0.010424	-0.035585	-0.06933	0.38791	0.046133	-0.059269	-0.025438	-0.063838	0.0028299	-0.087468	-0.095912	0.057511	1.416	-0.44835	-0.10079	-0.55005	-0.018902	0.50741	0.021603	-0.042501	-0.27762	-0.14712	-0.55086	2.0558	-0.001033	0.11257	-0.052126	-0.064865	0.0016642	-0.13251	-0.057385	-0.043873	0.23566	-0.77503	0	0.20052	-0.019314	0.15986	-0.031632	-0.088352	-0.047801	0.30793	-0.10998	0.031155	0.050961	0.35528	0.22684	0.019503	-0.051856	0.40098	0.0027745	-0.016626	-0.21255	-0.24618	-0.28438	-0.031086	-0.085855	-0.088639	0.082765	1.7326	-0.087168	0.0092051	0.006109	-0.059178	-0.11443	-0.21528	0.19056	0.11136	-0.48288	2.0365	-0.019863	0.037217	-0.60497	-0.11421	0	0.41585	-0.11325	0.077718	0.66106	1.8047	0.49666	0.60485	-0.085045	-0.33029	0.14961	-0.039952	0.19558	-0.11155	-0.0094046	
Amplification Peak 14 - CN values	22q13.32	chr22:46335313-51304566(probes 1497803:1500006)	chr22:48954289-48960611(probes 1499749:1499751)	chr22:48382101-51304566(probes 1499183:1500006)	0.10945	    0.10945		Actual Copy Change Given	0.00458	-0.058058	0.22962	0.016565	0.34551	0.016539	0.35943	-0.016429	0.75256	0.07988	0.096816	0.00097064	-0.055634	0.43454	0.016146	-0.034223	0.072467	-0.026577	-0.0081624	0.29256	1.4505	-0.028355	0.69259	0.87667	0.51909	0.14927	-0.045364	0.45649	-0.47681	0.0098051	0.015501	0.72886	0.40644	0.5266	0.02182	0.9138	0.035524	-0.051946	0.064082	0.47272	0.003191	-0.44846	-0.13484	0.063284	1.1637	-0.094136	-0.011878	0.20396	1.0036	0.56333	0.043582	0.30457	0.0011093	0.023145	0.039195	1.7604	0.25308	0.042449	0.99841	-0.22451	0.0094491	0.019176	-0.023703	0.12285	0.15477	-0.0035614	0.73246	-1.0005	0.054945	0.051219	0.65571	0.02304	0.040044	-0.0094488	1.5404	3.6318	-0.51146	0.80708	-0.49185	-0.05442	-0.02058	-0.13781	0.014609	-0.10241	0.021603	-0.029629	0.66919	-0.36306	-0.69387	0.11272	-0.063166	0.38568	0.0037991	0.29151	0.45099	0.027076	0.28089	-0.055499	0.53046	
Deletion Peak  1 - CN values	1p36.31 	chr1:1-13739155(probes 1:5331)                       	chr1:5619360-5625689(probes 1560:1561)                	chr1:1-6905905(probes 1:2261)                         	0.00086889	  0.0069719		Actual Copy Change Given	-0.50695	-0.01037	0.00041593	0.0062481	-0.086784	0.020399	-0.023654	-0.010508	0.41873	0.23597	0.050108	-0.63434	0.16595	0.017893	0.3799	-0.0034627	-0.7845	0.010842	0	-0.96519	0.00597	0.16926	0.036221	-0.099873	-0.81137	0.088403	0.64526	-0.22305	-0.49026	0.0038237	0.024689	-0.52235	0.088692	-0.30275	-0.15994	-0.45676	0.26781	0.13595	-0.63765	-1.2929	-0.018506	0	0.39364	0.038407	0.055515	-0.072214	0.25043	0.22515	0	0.48564	-0.16115	-0.062495	-0.022224	0.0091705	-0.48827	0.31992	-0.05725	0.023566	-0.0064611	0.065149	0.010424	-0.56154	0.42385	-0.23936	-0.39159	-0.79909	-0.068127	-0.018353	-0.22564	0.033267	-0.063703	0	0.071391	0.01494	-0.0040162	-0.20672	0.013074	-0.57578	0.042874	-0.066922	-0.018249	0.00013863	0.015587	-0.27921	-0.005814	-0.57709	0.65204	-0.72623	-0.68661	-0.10197	-0.044957	-0.070853	0.018688	0.19798	0.061753	0.016425	-0.072007	-0.0045695	0.09827	
Deletion Peak  2 - CN values	1p22.1  	chr1:76538397-114523464(probes 41505:64029)        	chr1:93289794-93310876(probes 51762:51770)          	chr1:76136546-114501967(probes 41209:64017)        	0.0016279	  0.0025474		Actual Copy Change Given	-0.50463	-0.01037	0.00041593	0.0062481	-0.53936	0.020399	-0.39904	-0.010508	0.41873	-0.27105	0.044999	0.009378	-0.34847	0	0.3799	-0.0034627	0.067732	0.013353	0	-0.46933	-0.80078	0.16926	0.036221	0.0076392	-0.021373	0.088403	-0.0063754	-0.22305	-0.51465	0.0038237	0.0055188	-0.43799	-0.62236	-0.39096	-0.15994	-0.3592	0.12896	-0.70573	0.0016521	-0.58823	0.0015255	-0.5201	0.39364	0	0.96206	0	-0.31984	0.24187	0	0.0037699	-0.13794	0.32705	0.0054139	0.0091705	0.0011516	0.45649	-0.026577	-0.052757	0.0011093	0.043753	0.0023581	-0.54111	-0.21964	-0.23015	-0.39282	0.0098669	0.26938	-0.88116	-0.19987	0.033267	0.030217	0	-0.60867	0.01494	-0.0040162	-0.20672	0.051672	1.188	0.50684	0	0	0.00013863	0.00041593	-0.30114	0.0011093	-0.49822	-0.45651	-0.62236	0.011539	-0.10197	0.0023048	-0.0087146	0.019245	0.23132	0.016665	0.0027745	-0.38302	-0.93622	0.16867	
Deletion Peak  3 - CN values	2q37.3  	chr2:234677660-243199373(probes 255721:260560)    	chr2:239748105-240337579(probes 259172:259341)    	chr2:236534202-243199373(probes 257099:260560)    	0.0059136	  0.0059136		Actual Copy Change Given	-0.005814	-0.054151	0.34892	-0.0015243	0.3311	-0.26266	0.00046559	0.00597	0.54784	-0.65193	-0.12875	-0.67177	0.3543	-0.047328	0.36805	0.0040243	-0.74024	0.013074	-0.27081	-0.03196	-0.058866	-0.082535	-0.16307	-0.80053	-0.011749	-0.032587	0.23241	-0.47247	0.018523	-0.0094659	0.0041632	-0.07731	0.20195	0.28438	0.11749	0.31263	0.0081959	-0.27862	-0.63019	-0.68387	0.41496	-0.36431	-0.19963	-0.069578	0.15636	-0.43534	0.2523	0.44051	0.97812	0.0032144	0	-0.031223	-0.0085766	-0.00041585	-0.074945	0.26028	0.31562	-0.0043418	-0.027168	0.039649	-0.14335	-0.53839	0.00097064	0.07988	-0.031831	-0.79076	-0.19137	-0.023703	-0.24594	-0.015329	0.35715	-0.21673	-0.47923	-0.0041988	0.43361	-0.51063	0.33205	0.38051	-0.057116	0.022304	0.0072217	-0.12343	0.015028	0.012892	0.35304	-0.42073	0.047694	-0.32428	-0.65994	0.0081959	-0.0013161	0.37347	-0.015342	0.013492	-0.45422	-0.0267	-0.00069303	0.0058309	0.021183	
Deletion Peak  4 - CN values	3p26.1  	chr3:1-81811783(probes 260561:307448)                	chr3:8660144-8701688(probes 264210:264236)            	chr3:8650633-8772088(probes 264209:264256)            	0.084199	   0.087198		Actual Copy Change Given	-0.50838	-0.61258	-0.0019399	-0.13587	-0.10867	-0.07016	-0.40823	-0.0016935	-0.12476	0.0036076	-0.75573	0.008892	-0.33996	-0.00090132	0.41396	0.010564	-0.7908	-0.80136	0.118	-0.040671	0.0025986	0.27333	-0.005546	0.026246	0.021323	-0.55255	0.0077783	0.0043021	-0.4434	-0.0016358	-0.27862	-0.43322	0.019783	-0.048883	0.18609	-0.37739	0.060365	0.12155	-0.67536	0.59358	0.017544	-0.029857	-0.027808	0.78377	0.64066	-0.10979	0.5998	0.25131	0.018103	-0.0074487	0.083198	-0.032627	0.023706	-0.0018014	0.21339	-0.4959	-0.3634	-1.2213	0.0026357	0.049285	0.036653	-0.025255	0.23535	0	0.0014296	0.001803	0.01664	0.01433	-0.21131	0.00025005	-0.4128	0.028376	0.034818	0.01291	0.031436	0	-0.14592	0.44845	-0.48754	0.040609	-0.011206	-0.00027724	0.0040243	-0.31334	0.0040243	-0.52842	-0.22441	-0.64173	0	0.004719	0.0097276	-0.014277	0.011286	0.013074	-0.35602	0.0056919	-0.014503	-0.94294	-0.056173	
Deletion Peak  5 - CN values	3q27.2  	chr3:109128554-198022430(probes 319721:366985)    	chr3:185676351-185704890(probes 360502:360514)    	chr3:185683329-185696138(probes 360509:360510)    	0.2092	    0.20446		Actual Copy Change Given	0.017264	-0.60274	-0.0019399	-0.13587	-0.064374	-0.0095684	0.0097775	0.0094491	0.3393	0.00055459	-0.73582	0.0066329	0.53432	0.41605	0.41396	0.0083351	0.14994	0.011261	0.118	-0.04745	-0.0019399	0.29088	-0.005546	0.067375	0.021323	-0.57763	0.0052749	0.0043021	-0.45565	-0.0064601	-0.28382	-0.4207	0.010632	0.31659	0.18609	-0.35019	0.050108	0.12104	0.60812	0.58059	0.022585	0.066515	0	-0.83822	0.61854	-0.12922	0.46038	0.2675	0.0086135	0	0.083198	-0.017391	-0.87619	0.0019418	0.25357	1.1364	-0.0048945	-0.10145	0.0026357	0.049285	0.033127	0.0052283	0.24264	0	0	0.001803	0.56099	0.010842	-0.21627	-0.011749	0.041317	0.028376	0.018663	0.018338	0.022725	0	-0.45736	0.48281	-0.48123	0.045424	0.00013863	-0.00027724	0.0070826	-0.30854	-0.0062286	0.54201	0.047126	-0.63468	-0.010514	-0.00069303	-0.0012473	0.0081959	-0.0093796	0.013074	-0.35946	-0.0030938	-0.011473	-0.94062	-0.0023553	
Deletion Peak  6 - CN values	4p16.3  	chr4:1-6915319(probes 366986:370119)                  	chr4:3576499-3624138(probes 367984:367993)            	chr4:3582639-3627605(probes 367987:367997)            	0.071319	   0.073957		Actual Copy Change Given	-0.50795	0.0282	-0.0015243	-0.0040162	0.39761	-0.69316	0.022915	-0.0083786	-0.13034	0.0077783	0	0.017684	-0.35886	-0.01025	-0.0037395	0.0079175	0.1829	0.80034	-0.0023553	0.38066	-0.61652	-0.089699	-0.24363	-0.81794	0.0044411	-0.54562	-0.0083487	-0.014641	0	0.0060508	0.0043021	0.024127	0.038771	0.7614	-0.1913	0.045282	0.0054695	-0.27806	-0.37459	0	-0.030612	-0.51918	0.0075	-0.98833	-0.20037	0.51376	0.028622	-0.28299	0.013632	0.55039	0.054629	-0.068247	0.019783	0.0076392	-0.13949	-0.21119	-0.025346	0.0093098	-0.045364	0	0.026176	0.0091238	0.24225	-0.57999	-0.009086	0.00083195	-0.41729	-0.014083	0.2664	0.054091	0.71961	-0.11466	-0.28501	0.033504	0.020343	-0.096968	-0.48764	-0.04811	0.54365	-0.011026	0.0013868	0	-0.0026322	-0.14866	-0.010953	-0.53025	-0.46341	0.2061	-0.0084385	-0.020412	-0.012713	-0.0026322	0.015892	0.0065262	1.0713	-0.61873	-0.0037395	-0.48029	-0.058058	
Deletion Peak  7 - CN values	4q34.3  	chr4:178911874-183060693(probes 465226:467355)    	chr4:181521852-182082855(probes 466564:466567)    	chr4:180598680-191154276(probes 465902:469774)    	7.0015e-05	 7.0015e-05		Actual Copy Change Given	-0.50795	0.020483	-0.013457	-0.010094	-0.068663	0.0030262	0.013961	0.0090312	-0.10161	-0.31937	0	-0.0048813	-0.35886	-0.0079558	0	0.015447	0.14035	-1.2929	-0.0023553	0.36356	-0.0023553	-0.09026	0.49406	-0.72172	0.021183	-1.2929	-0.49861	-0.0071067	-0.0041546	0	0.0079175	-0.42637	0.0069435	-0.28382	-0.1913	-0.33168	0.01447	-0.2644	0.34795	-0.63727	-0.019575	-0.51918	0.0075	0.69231	-0.21156	0.51376	-0.2894	-0.28299	-0.51218	0.0012714	0.029149	-0.037233	0.025671	-0.0091286	-0.14138	-0.50836	-0.025346	0.0093098	0.0024969	0.098445	0.019104	0.010935	0.24965	-0.054727	0.84737	0.0015255	-1.0874	0.021183	0.24311	-0.97495	-0.38537	-0.11466	-0.28822	-0.029985	-0.47025	-0.096968	-0.48764	-0.025796	0.47255	0.014609	-0.0018014	0	0.59332	-0.25259	-0.005814	-0.46135	-0.18295	0.23985	-0.0084385	-0.025072	-1.2929	0.018803	-0.92554	0.011136	0.22289	0	0.028622	0.062223	-0.058058	
Deletion Peak  8 - CN values	5q11.2  	chr5:1-180915260(probes 469775:570325)               	chr5:58260298-59787985(probes 500866:501810)        	chr5:58883803-58885578(probes 501339:501340)        	0.082369	    0.23008		Actual Copy Change Given	0.0083351	0.62151	-0.0087146	0	-0.13083	-0.018379	0.010753	-0.00013862	-0.089865	-0.27774	-0.091821	-0.61882	0.15621	0.40485	-0.41089	0.0022193	-0.76411	0.014659	0.0097813	0.0040948	0.00597	-0.019314	1.3924	-0.33272	-0.72473	-0.55005	0.012376	-0.4534	-0.0091286	0.00090902	-0.572	-0.42844	0.01872	-0.18421	-0.0015872	-0.35897	0.078871	0.12702	-0.0077483	-0.61221	0	-0.35624	-0.88366	-0.0053809	-0.49538	-0.23239	-0.038442	0.2321	-0.00093861	-0.11441	-0.30475	0	-0.0008316	-0.0036851	0.040326	0.078871	-0.026304	0.013353	-0.0011087	0.050422	0.029977	0.00078549	-0.19124	-0.57891	-0.55093	0	0.44782	-0.9177	0.22572	-0.021235	-0.38347	0.033244	0.024285	0.019038	-0.48607	0.11045	0.017684	0.016525	-0.49975	0.010146	0	0.18601	0.0022193	0.051276	-0.0083834	-0.51469	0.053094	-0.63451	0.0023581	-0.020961	0.049966	0.53204	0.014747	0.011121	2.1114	-0.0026322	0.020623	-0.94379	0.10799	
Deletion Peak  9 - CN values	5q31.3  	chr5:133558221-158916359(probes 541730:557380)    	chr5:142667584-142788710(probes 546844:546891)    	chr5:136460856-157411929(probes 543550:556384)    	0.0063705	  0.0093291		Actual Copy Change Given	0.0083351	0.020483	-0.0087146	0	-0.59331	-0.018379	0.010753	-0.00013862	-0.089865	-0.27977	-0.74351	-0.61882	0.15621	0.40485	0.33238	0.0022193	-0.77074	-0.72721	-0.0089906	0	-0.045093	-0.019314	0.5958	-0.33272	-0.73556	-0.54431	-0.48817	-0.47309	-0.0091286	0.010502	-0.572	-0.42996	-0.63194	-0.20921	-0.0015872	-0.35897	0.078871	0.12702	0	-0.61221	0	-0.48311	-0.90411	-0.0053809	-0.49566	-0.23239	-0.038442	0.2321	0.0052749	-0.11441	-0.30475	0	-0.0008316	-0.40241	0.027778	-0.55096	0.24404	0.013353	-0.0011087	-0.25646	0.050677	0.00078549	-0.19124	-0.57891	-0.55093	0	-0.077535	-0.9177	0.22572	-0.0034627	-0.37842	0.042909	0.010982	0.019738	-0.49414	0.11045	-0.031359	0	-0.50142	0.010146	0	0.18601	-0.63007	0.051276	0.001803	-0.51469	0.053094	-0.6449	0.0023581	-0.020961	-0.66085	-0.053206	-0.89334	0.011121	-0.36706	-0.0026322	0	-0.94863	0.11345	
Deletion Peak 10 - CN values	6q25.2  	chr6:101844516-171115067(probes 625993:666860)    	chr6:154722218-154835181(probes 658090:658172)    	chr6:102799470-171115067(probes 626527:666860)    	8.0176e-05	  0.0060067		Actual Copy Change Given	-0.51383	-0.62207	0.014888	0.35962	-0.58009	-0.01329	-0.40646	-0.016841	-0.09185	-0.20137	0.008117	0.027076	-0.62912	-0.43967	-0.39379	-0.42364	-0.77392	-0.005814	-0.053611	-0.49229	0.0063871	-0.12369	-0.32983	-0.33491	-0.73979	0.036611	-0.74534	0.018383	-0.0067813	-0.48617	-0.0027196	-0.428	-0.63641	-0.50929	0.0042391	-0.3983	-0.33063	-0.70755	-0.67903	-0.61374	-0.95435	-0.52307	-0.017803	-0.89693	-0.51548	0.07186	-0.30357	-0.54512	-0.54098	-0.58342	-0.29497	0.1155	-0.89206	0.31546	-0.26733	-0.32472	-0.36113	-0.0023553	-0.091949	0.014881	-0.41322	-1.1444	-0.61997	-0.58078	-0.86657	-0.79151	-0.52133	0.015587	-0.61451	-0.33006	-0.78404	-0.091254	0.014609	0.023101	-0.48743	0.1783	-0.48533	-0.49085	-0.49767	-0.87494	-0.51074	-0.13355	-0.63528	-0.32997	-0.21812	0.019281	-0.20008	-0.64123	-0.00013862	-0.040616	-0.65175	-0.58088	-0.9094	-0.64215	-0.63739	-0.83962	-0.37414	0.060651	0	
Deletion Peak 11 - CN values	6q27    	chr6:127756786-171115067(probes 640698:666860)    	chr6:169855301-170106708(probes 666440:666608)    	chr6:102799470-171115067(probes 626527:666860)    	2.9564e-05	   0.016207		Actual Copy Change Given	-0.51383	-0.62207	0	0.39429	-0.5897	-0.01329	-0.40646	-0.016841	-0.09185	-0.20137	0.008117	0.027076	-0.62912	-0.43967	-0.39379	-0.42364	-0.80329	-0.005814	-0.053611	-0.4959	0.0063871	-0.12369	-0.32983	-0.33491	-0.73979	0.036611	-0.74534	0.018383	-0.0067813	-0.96756	0.0049969	-0.428	-0.63641	-0.50929	0.0042391	-0.3983	-0.33063	-0.70755	0.022164	-0.6761	-0.99854	-0.52307	-0.017803	-0.8927	-0.51548	0.076056	-0.30357	-0.54512	-0.54098	-0.58342	-0.29497	0.1155	-0.89206	0.31546	-0.26733	-0.32472	-0.36113	-0.015151	-0.091949	0.027667	-0.41322	-1.1372	-0.61997	-0.58078	-0.89025	-0.80708	-0.52133	0.015587	-0.61451	-0.33006	-0.78404	-0.10425	0.014609	-0.80537	-0.48743	0.1783	0.13228	-0.48536	-0.49767	-0.93777	-0.51074	-0.13355	-0.63528	-0.32997	0.48889	0.019877	-0.20008	-0.67177	-0.00013862	-0.040616	-0.65175	-0.60504	-0.9094	-0.66254	-0.63739	-0.83962	-0.37414	0.060651	0	
Deletion Peak 12 - CN values	9p21.3  	chr9:21959052-21997722(probes 843294:843307)        	chr9:21959052-21997722(probes 843294:843307)        	chr9:19463399-30829554(probes 841490:848210)        	5.3742e-88	 5.3742e-88		Actual Copy Change Given	-0.51166	-1.2929	-0.39675	0.010564	0.33444	0.78655	-0.40192	-0.042322	0.34238	-0.011473	0.0034687	-0.6171	-0.78032	-0.43469	-0.40882	-1.183	-0.78121	-1.2929	-0.046583	-1.2929	-1.2929	-0.12291	-0.18578	-0.35521	-1.2929	-0.8855	-1.2929	0	-1.2929	-0.46551	-1.1413	-1.2929	-0.61986	-0.51969	0.0050728	-1.156	0.0026975	-0.30647	-1.2929	-1.2929	-1.2929	-0.53063	-0.87705	-1.2929	0.040751	-0.44701	-0.96953	-1.2929	-0.54108	-0.57958	-0.12668	-0.35099	-1.2929	-0.0024938	-0.59273	-0.53256	-0.037898	-0.22453	0.0037465	-0.093772	-0.74368	-1.2929	-0.18672	-1.2659	-0.91384	-0.78443	-0.51105	-1.2929	-0.60381	-1.2929	-0.38504	-0.47625	-1.2929	0.018198	-1.2929	-0.69224	-0.46632	-1.2929	-0.49036	-0.8679	-0.50432	-0.13316	-1.2398	-0.30137	-1.2929	-1.2929	-0.458	-1.2929	-0.72217	-1.2074	-1.2929	-1.2929	-1.2929	-1.2711	-1.0887	-1.2929	-1.2929	0.77291	-0.39986	
Deletion Peak 13 - CN values	9q21.2  	chr9:38614979-88357924(probes 852999:865278)        	chr9:79220175-79522032(probes 858879:859145)        	chr9:79375311-79381290(probes 859013:859014)        	0.088185	   0.087198		Actual Copy Change Given	0.015168	-0.63501	0.26028	0.010564	0.33444	-0.91802	-0.40192	-0.042322	-0.09621	-0.011473	0.0034687	0.0040243	-0.046041	-0.43469	-0.081339	-0.42626	-0.78242	-0.77268	-0.046583	-0.065903	-0.83946	-0.12291	-0.18578	-0.74516	-0.040345	-0.52184	0	0	-0.50815	-0.47252	-0.55867	-0.0052616	-0.61986	-0.20883	0.01064	-0.38173	-0.012257	-0.35143	-0.64556	-0.63793	-0.028296	0.032704	0.13702	0.036148	0.040751	-0.44701	-0.015318	-0.29177	-0.00097017	-0.57958	-0.12668	-0.053746	-0.86607	-0.0024938	0.12035	-0.60957	-0.037898	-0.22453	0.0037465	-0.093772	-0.37019	-0.53848	-0.20747	0.12461	-0.91933	-0.77939	-0.51105	0.0066653	-0.60381	0.020343	-0.39923	-0.20321	-0.60514	0.020298	-0.50043	-0.69224	0.09638	0.43222	-0.49036	-0.0015243	-0.0092666	-0.13316	-0.62501	0.031253	0.39114	0.40006	0.015168	0.14607	-0.7144	0.014888	-0.65761	0.48509	-0.88749	-0.32275	-0.61386	-0.82146	-0.40963	-0.95413	-0.11032	
Deletion Peak 14 - CN values	10q21.1 	chr10:38987170-66592074(probes 923965:936219)      	chr10:52831005-54061437(probes 927620:928586)      	chr10:52930316-54140902(probes 927701:928630)      	0.020088	   0.047185		Actual Copy Change Given	-0.50733	-1.259	-0.40992	-0.37132	-0.59556	-0.019358	-0.0096311	-0.0066432	-0.12775	-0.28013	-0.73091	-0.62589	-0.11548	-0.88631	-0.40915	-0.43387	-0.77943	0.017684	-0.0045695	-0.4797	-0.84475	-0.11182	-0.41363	-0.35704	-0.03885	-0.54865	0.21791	-0.017181	-0.50432	-0.47564	-0.56873	-0.45907	-0.96646	-0.21305	-0.37709	-0.034904	-0.013657	-0.73281	0.0024969	-0.65518	-0.037163	0.054945	-0.046718	-0.86685	-0.47194	-0.44992	-0.29721	-0.28239	-0.54441	-1.1674	-0.3866	-0.049695	-0.86436	0	-0.054822	-0.56406	-0.36556	-0.22367	-0.024798	-0.24798	-0.37842	-0.54364	0.0020805	-0.1025	-0.92909	-0.78184	-0.00070165	-0.91191	-0.6122	-0.90168	-0.39397	-0.22978	-0.60777	-0.078187	0	-0.69342	-0.47986	-0.032354	-0.49413	-0.026051	-0.0070576	-0.13626	0.0030522	-0.25168	-0.73617	-0.062404	-0.46812	-0.66226	-0.70621	-0.6171	-0.65966	-0.59283	-0.89936	-0.64222	-0.61799	-0.82782	-0.011473	-0.95319	-0.062898	
Deletion Peak 15 - CN values	10q23.31	chr10:89617158-90034038(probes 950060:950489)      	chr10:89617402-89735596(probes 950061:950248)      	chr10:89440002-90295429(probes 949935:950625)      	5.6847e-08	 5.2903e-07		Actual Copy Change Given	-0.50733	-0.62274	-0.41043	-0.37132	-1.2441	0.0053879	0.006576	-0.0091298	-0.48652	-0.28013	-0.73091	-0.62589	-0.11548	-0.42325	-0.40915	0.40377	-0.77943	-0.78294	-0.0045695	-0.4797	-1.2929	-0.13225	-0.41363	-0.35704	-1.1993	-0.54865	0.21791	-0.017181	-0.50432	-0.47411	-0.56873	-0.45907	-0.96049	-0.21305	-0.37709	-0.90783	-0.012162	-0.73281	-1.1671	-0.62873	-0.037163	0.050534	-0.039394	-0.86102	-0.47194	-0.44992	-0.29721	-0.28239	-0.54441	-0.86199	-0.3866	-0.049695	-0.63083	0	-0.054822	-0.52818	-0.36556	-0.22367	-0.024798	-0.24798	-0.37842	-0.54253	-0.60844	-0.1025	-0.92909	-0.78184	-0.50557	-0.90927	-0.60555	-1.2929	-0.39397	-0.22978	-0.60777	0.023241	0.0114	-0.69342	-0.46865	-0.0051623	-0.49413	-0.035576	-0.0070576	-0.13626	0.0030522	-0.25168	-0.90737	-0.062404	-0.48583	0.18646	-0.70621	-0.85987	-0.64666	-0.59283	-0.89936	-0.64222	-0.61799	-1.2929	-0.011473	-1.2929	-0.062898	
Deletion Peak 16 - CN values	11q22.3 	chr11:103906053-128463796(probes 1035863:1052489)	chr11:108338341-108388137(probes 1038334:1038344)	chr11:92784204-135006516(probes 1028839:1056042)  	6.833e-05	  6.833e-05		Actual Copy Change Given	0.00013863	-0.62429	-0.012024	-0.37256	-1.0855	0.00052866	-0.40358	0.00083195	-0.0010057	-0.28495	0.0070826	0.0030522	-0.12362	0.39637	0.37298	0.7862	-0.20156	-0.75227	0.23643	0.35669	-0.3856	0	-0.79348	-1.1699	-0.70621	-0.4787	-0.0049844	-0.51135	0.0060901	-0.0022784	-0.32112	-0.0067813	-0.30868	-0.20411	-0.00047869	-0.80587	-0.016396	-0.23137	-0.65015	-1.2571	-0.49892	-0.54522	-0.023292	-0.88537	-0.50151	-0.12978	-0.3133	0.23132	-0.0073339	-0.57327	-0.18999	-0.048613	-0.04726	-0.060345	0.16941	-0.14798	-0.041024	-0.061958	-0.07401	-0.090069	-0.024661	0.0050893	-0.53388	-0.5767	-0.92642	-0.0045695	-0.53212	-0.012162	0	0	0.37907	-0.043704	-0.2446	0	0.0087528	-0.53307	0.044857	-0.022309	-0.011887	-0.037082	-0.49955	-0.0011087	-0.62846	-0.32957	-0.037665	-0.52362	-0.47438	0.042024	0.013632	-0.6192	0.013772	0.4765	-0.88811	-0.63707	-0.18437	-0.018765	0.36051	-0.95826	-0.1652	
Deletion Peak 17 - CN values	12q24.32	chr12:69750840-133851895(probes 1093038:1130020)  	chr12:126922270-127363489(probes 1127714:1127822)	chr12:126779776-127532518(probes 1127585:1127975)	0.079884	   0.081818		Actual Copy Change Given	0.0033299	-0.015329	0.32834	0.021323	0.30255	-1.0216	-0.41153	0	0	0.0016642	0.021183	-0.01561	0.32608	-0.0038091	-0.41915	-0.01106	-0.79742	-0.0029091	0.0027369	-0.057978	0	0.14132	0.043431	-0.35214	0.0062481	0.1348	0.00097064	-0.0076946	0.015028	0.00049299	0.0084743	0.0055529	0.032704	0.29087	0.0001505	0.32394	-0.0023553	-0.30713	0.022865	-1.2929	0.0024969	0.53029	0.010564	0.017044	0	0.090786	-0.0018014	-0.022611	-0.099077	0.45567	0.0282	-0.046041	0.017264	0.0044411	0.12638	-0.0077027	-0.033132	-0.097942	0.00055459	-0.23542	-0.014503	-0.54081	-0.20137	0.098415	-0.50034	-0.00027724	-0.0085766	0.0063871	-0.21608	0.0094491	0.019026	-0.2315	-0.62455	-0.0066874	0.46974	0.086088	-0.17612	-0.01577	0.020203	-0.0091286	-0.021812	0.034959	0.0019418	-0.14596	-0.0034627	-0.49353	0.03369	-0.6667	-0.0018014	-0.0022168	-0.028588	-0.064508	0.007247	-0.31692	-0.37767	0.0032207	-0.075745	0.011679	0.05025	
Deletion Peak 18 - CN values	14q31.1 	chr14:78263652-107349540(probes 1219154:1236162)  	chr14:79744218-80334035(probes 1220278:1220684)    	chr14:80073125-80074798(probes 1220482:1220483)    	0.039393	   0.038428		Actual Copy Change Given	-0.51166	0.0024969	-0.010508	0.0013868	0.37727	0	0	-0.0008316	0.20866	-0.0080244	-0.077631	-0.0036011	-0.3511	-0.89377	-0.012438	0.0058309	0.11845	0	-0.0033243	-0.4817	-0.012713	-0.098418	-0.077753	0	0.0048579	0.076135	-0.75392	0.023095	0.49044	-0.00061601	-0.56803	0.44528	-0.96689	-0.41278	0.0086896	-0.4023	-0.0123	0.029092	0.0062481	0.54577	-0.022801	-0.53622	-0.040073	0.084473	0.10424	-0.34398	-0.30803	-0.034768	-0.54935	-0.0059289	-0.30157	0.30521	0.0079175	0.00055664	0.1255	-0.54708	-0.37155	-0.22404	0.011539	-0.25101	-0.38067	-0.54192	0	0.097542	0.016329	0.0043021	-0.0037147	-0.92694	-0.22096	-0.073343	-0.4064	-0.23383	0	-0.00059878	-0.50598	0.083611	-0.4748	-0.47937	-0.4992	-0.010508	-0.0042929	0.028341	0.0013868	-0.29257	-0.0069195	-0.5228	0.029747	-0.65919	0.0049969	-0.61738	-0.65239	-0.02603	-0.010528	-0.32182	-0.39867	-0.82757	0.042631	0.011121	0.13721	
Deletion Peak 19 - CN values	15q21.1 	chr15:36216473-54921359(probes 1241613:1252763)    	chr15:44823263-44859672(probes 1246476:1246490)    	chr15:37042933-54540556(probes 1242230:1252497)    	0.0015584	  0.0015584		Actual Copy Change Given	0.015866	0.58256	-0.043466	0.011261	0.30537	0.0085875	-0.0067318	0.51176	-0.081639	0.24638	-0.023703	0.017824	0.1619	0.012864	0.39147	-0.41575	-0.78391	0.013213	0.45258	0.36372	0.013074	0.07815	-0.096448	-0.3567	-0.030828	-0.54421	-0.0059522	-0.0053082	0.040044	0.0036848	0.023145	0.36707	-0.26673	0.36592	0.017061	0.2355	-0.3463	0.053997	0.022557	0.52136	-0.01849	0.036512	-0.056307	0.022364	0.09304	-0.3206	0.28786	0.49372	-0.0025523	-0.024744	-0.0081624	-0.048613	-0.01849	-0.059135	-0.23361	0.50794	0.26265	0.023426	0.0019418	0.066832	-0.43918	-0.53015	0.17862	-0.56783	0.05072	0.012795	0.16745	0.015866	-1.0037	0.031014	0	-0.23175	-0.48617	-0.77857	0.20488	-0.70181	-0.77107	-0.96231	0.021463	-0.85932	-0.011611	0.19117	0.014051	0.13727	-0.005261	0	0.020623	-0.67122	0.025531	0.016146	-0.0016629	0.44528	0.032166	0	-0.60257	0.030451	-0.021373	0	-0.032314	
Deletion Peak 20 - CN values	16q23.3 	chr16:73418707-90354753(probes 1310761:1321528)    	chr16:82658729-83217258(probes 1317818:1318181)    	chr16:82896341-82896695(probes 1318000:1318001)    	0.052187	   0.051275		Actual Copy Change Given	-0.51084	-0.63263	0.38469	-0.27129	0.33561	-0.14816	-0.012251	-0.0083005	-0.06642	-0.015466	0.021043	-0.0085766	-0.35791	-0.016361	0.25949	-0.016017	0.11089	0.055515	-0.014916	-0.49678	0.027076	0.085654	-0.77931	-0.79727	-0.050641	-0.53713	-0.011198	-0.060211	-0.50629	-0.44894	0.012934	-0.032996	0.065513	0.065513	-0.37733	0.10133	-0.0037395	0.008104	0.021463	0.51577	-0.045499	0.018103	-0.06142	-0.90321	-0.23459	-0.45376	0	-0.59837	-0.017403	-0.026691	0.044574	-0.057789	-0.070402	0.008892	-0.15848	0.43294	0.26514	0.022865	-0.0086166	-0.14061	0.035383	-0.54445	0.21991	-0.21973	0.03317	-0.78967	-0.061689	-0.0012473	0.15248	-0.32542	-0.03395	0.014746	-0.604	-0.015098	-0.53896	-0.041159	0.45922	-0.073738	0.5359	-0.033269	-0.53388	0.13066	-0.63765	-0.085099	-0.76604	-0.54687	-0.0094046	0.15129	0.031155	0.010424	-0.014916	-0.049559	-0.89831	-0.013815	0.019083	0.029606	-0.042924	-0.83202	-0.081624	
Deletion Peak 21 - CN values	17q12   	chr17:13971526-61507293(probes 1328891:1348538)    	chr17:36824189-37386898(probes 1336300:1336558)    	chr17:36730242-37459547(probes 1336252:1336589)    	0.13922	    0.13987		Actual Copy Change Given	-0.0027707	-0.050251	-0.017391	0.0070826	0.27418	0.88342	-0.018716	-0.0095426	-0.079244	-0.29497	-0.61221	-0.0031859	-0.21763	0.00326	-0.39969	0.3486	0.08197	-0.01037	-0.00069303	0.35146	-0.037762	0.083198	0.077133	0.58811	-0.060076	-0.53409	-0.01409	-0.0023553	-0.49141	-0.00707	-0.27105	-0.49736	-0.24873	-0.091252	0.0081328	0.24591	-0.035993	0.021791	0.026373	-0.083465	-0.032314	-0.58598	-0.14262	-0.80729	0.078727	0.51986	-0.013815	-0.032996	-0.015191	-0.043172	0.020763	0.28279	-0.03245	-0.37954	-0.14542	-0.57398	0.24435	0.021183	0.0016642	-0.23126	0.03863	0.017777	-0.23985	0.060222	0.019126	-0.010922	-0.56587	-0.034904	0.083198	0.055088	-0.42789	0.02332	-0.28679	-0.003507	-0.060211	0.12064	-0.50898	-0.061361	0.033972	-0.033814	-0.015054	-0.0067813	-0.0045695	-0.18059	0.52853	-0.034812	-0.53865	0.15861	0.018103	0.013632	-0.046989	-0.60012	-0.899	-0.32251	0.27659	0.020607	0.28977	-0.97856	0.18798	
Deletion Peak 22 - CN values	19p13.3 	chr19:1-3814391(probes 1401217:1402048)               	chr19:1107036-1186532(probes 1401366:1401381)        	chr19:1118551-1201083(probes 1401369:1401385)        	0.081818	   0.081818		Actual Copy Change Given	-0.042374	0.4811	0.29596	-0.0033243	-0.70064	0.017098	-0.045857	-0.017529	0.39874	-0.13212	0.61697	-0.035585	-0.06933	0.38791	0.046133	-0.059269	-0.025438	-0.063838	0.010006	-0.087468	-0.095912	0.057511	-0.033822	-0.44835	-0.10079	-0.55005	-0.018902	-0.22502	0.021603	-0.042501	-0.27762	-0.58451	-0.55086	-0.29414	-0.001033	0.11257	-0.052126	-0.064865	0.0016642	-0.13251	-0.057385	-0.60274	0.23566	-0.77503	0	0.20052	-0.019314	0.15986	-0.53804	-0.11598	-0.047801	0.21714	-0.10998	0.031155	0.050961	0.39363	0.22684	0.019503	-0.051856	-0.22167	0.0027745	-0.016626	-0.21255	-0.24618	-0.28438	-0.031086	-0.085855	-0.088639	0.082765	-0.93997	-0.087168	0.0092051	-0.60844	-0.059178	-0.11443	-0.21528	0.19056	0.11136	-0.48288	-0.060211	-0.019863	0.037217	-0.60497	-0.11421	0	-0.65476	-0.11325	0.077718	0.66106	0.011679	0.49666	-0.64001	-0.1208	-0.33029	0.12155	-0.039952	0.19558	-0.1233	-0.0094046	
