
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/399292/SKCM-NRAS_Hotspot_Mutants.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/SKCM-NRAS_Hotspot_Mutants/3157510/1.GDAC_mergedClustering.Finished/SKCM-NRAS_Hotspot_Mutants.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SKCM-NRAS_Hotspot_Mutants", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"                           "-oT=SKCM-NRAS_Hotspot_Mutants"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=62, in cluster file=62, common to both=62
[1] "Reduce the number of clustering variables from 108 to 106."
[1] 106  62
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              12               50 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              12               50 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            13             49 
  TP53 MUTATED TP53 WILD-TYPE 
            13             49 
[1] "MUM1L1 MUTATION ANALYSIS"
[1] 3
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
              13               49 
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
              13               49 
[1] "CD163L1 MUTATION ANALYSIS"
[1] 3
  CD163L1 MUTATED CD163L1 WILD-TYPE 
               21                41 
  CD163L1 MUTATED CD163L1 WILD-TYPE 
               21                41 
[1] "PSG4 MUTATION ANALYSIS"
[1] 3
  PSG4 MUTATED PSG4 WILD-TYPE 
            12             50 
  PSG4 MUTATED PSG4 WILD-TYPE 
            12             50 
[1] "PPP6C MUTATION ANALYSIS"
[1] 3
  PPP6C MUTATED PPP6C WILD-TYPE 
             10              52 
  PPP6C MUTATED PPP6C WILD-TYPE 
             10              52 
[1] "ZNF99 MUTATION ANALYSIS"
[1] 3
  ZNF99 MUTATED ZNF99 WILD-TYPE 
             16              46 
  ZNF99 MUTATED ZNF99 WILD-TYPE 
             16              46 
[1] "KHDRBS2 MUTATION ANALYSIS"
[1] 3
  KHDRBS2 MUTATED KHDRBS2 WILD-TYPE 
               10                52 
  KHDRBS2 MUTATED KHDRBS2 WILD-TYPE 
               10                52 
[1] "POTEG MUTATION ANALYSIS"
[1] 3
  POTEG MUTATED POTEG WILD-TYPE 
             10              52 
  POTEG MUTATED POTEG WILD-TYPE 
             10              52 
[1] "MARCO MUTATION ANALYSIS"
[1] 3
  MARCO MUTATED MARCO WILD-TYPE 
             13              49 
  MARCO MUTATED MARCO WILD-TYPE 
             13              49 
[1] "SGCZ MUTATION ANALYSIS"
[1] 3
  SGCZ MUTATED SGCZ WILD-TYPE 
             9             53 
  SGCZ MUTATED SGCZ WILD-TYPE 
             9             53 
[1] "GLRB MUTATION ANALYSIS"
[1] 3
  GLRB MUTATED GLRB WILD-TYPE 
            10             52 
  GLRB MUTATED GLRB WILD-TYPE 
            10             52 
[1] "OR2W1 MUTATION ANALYSIS"
[1] 3
  OR2W1 MUTATED OR2W1 WILD-TYPE 
              8              54 
  OR2W1 MUTATED OR2W1 WILD-TYPE 
              8              54 
[1] "C4ORF22 MUTATION ANALYSIS"
[1] 3
  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
                7                55 
  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
                7                55 
[1] "UGT2B28 MUTATION ANALYSIS"
[1] 3
  UGT2B28 MUTATED UGT2B28 WILD-TYPE 
               11                51 
  UGT2B28 MUTATED UGT2B28 WILD-TYPE 
               11                51 
[1] "ZNF676 MUTATION ANALYSIS"
[1] 3
  ZNF676 MUTATED ZNF676 WILD-TYPE 
              11               51 
  ZNF676 MUTATED ZNF676 WILD-TYPE 
              11               51 
[1] "LIPI MUTATION ANALYSIS"
[1] 3
  LIPI MUTATED LIPI WILD-TYPE 
             9             53 
  LIPI MUTATED LIPI WILD-TYPE 
             9             53 
[1] "CADM2 MUTATION ANALYSIS"
[1] 3
  CADM2 MUTATED CADM2 WILD-TYPE 
              8              54 
  CADM2 MUTATED CADM2 WILD-TYPE 
              8              54 
[1] "CDH9 MUTATION ANALYSIS"
[1] 3
  CDH9 MUTATED CDH9 WILD-TYPE 
            11             51 
  CDH9 MUTATED CDH9 WILD-TYPE 
            11             51 
[1] "OR52E2 MUTATION ANALYSIS"
[1] 3
  OR52E2 MUTATED OR52E2 WILD-TYPE 
               7               55 
  OR52E2 MUTATED OR52E2 WILD-TYPE 
               7               55 
[1] "CLEC5A MUTATION ANALYSIS"
[1] 3
  CLEC5A MUTATED CLEC5A WILD-TYPE 
               5               57 
  CLEC5A MUTATED CLEC5A WILD-TYPE 
               5               57 
[1] "HIST1H2AA MUTATION ANALYSIS"
[1] 3
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  5                  57 
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  5                  57 
[1] "KIAA1257 MUTATION ANALYSIS"
[1] 3
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
                 8                 54 
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
                 8                 54 
[1] "PCDH18 MUTATION ANALYSIS"
[1] 3
  PCDH18 MUTATED PCDH18 WILD-TYPE 
              16               46 
  PCDH18 MUTATED PCDH18 WILD-TYPE 
              16               46 
[1] "SPOCK3 MUTATION ANALYSIS"
[1] 3
  SPOCK3 MUTATED SPOCK3 WILD-TYPE 
               9               53 
  SPOCK3 MUTATED SPOCK3 WILD-TYPE 
               9               53 
[1] "OR2G6 MUTATION ANALYSIS"
[1] 3
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             10              52 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             10              52 
[1] "STXBP5L MUTATION ANALYSIS"
[1] 3
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               14                48 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               14                48 
[1] "CNGB3 MUTATION ANALYSIS"
[1] 3
  CNGB3 MUTATED CNGB3 WILD-TYPE 
             15              47 
  CNGB3 MUTATED CNGB3 WILD-TYPE 
             15              47 
[1] "HHIPL2 MUTATION ANALYSIS"
[1] 3
  HHIPL2 MUTATED HHIPL2 WILD-TYPE 
               4               58 
  HHIPL2 MUTATED HHIPL2 WILD-TYPE 
               4               58 
[1] "OR10G8 MUTATION ANALYSIS"
[1] 3
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               6               56 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               6               56 
[1] "UGT2B4 MUTATION ANALYSIS"
[1] 3
  UGT2B4 MUTATED UGT2B4 WILD-TYPE 
              11               51 
  UGT2B4 MUTATED UGT2B4 WILD-TYPE 
              11               51 
[1] "ZBBX MUTATION ANALYSIS"
[1] 3
  ZBBX MUTATED ZBBX WILD-TYPE 
            11             51 
  ZBBX MUTATED ZBBX WILD-TYPE 
            11             51 
[1] "C1QTNF9 MUTATION ANALYSIS"
[1] 3
  C1QTNF9 MUTATED C1QTNF9 WILD-TYPE 
                6                56 
  C1QTNF9 MUTATED C1QTNF9 WILD-TYPE 
                6                56 
[1] "HCRTR2 MUTATION ANALYSIS"
[1] 3
  HCRTR2 MUTATED HCRTR2 WILD-TYPE 
               9               53 
  HCRTR2 MUTATED HCRTR2 WILD-TYPE 
               9               53 
[1] "KRT78 MUTATION ANALYSIS"
[1] 3
  KRT78 MUTATED KRT78 WILD-TYPE 
              7              55 
  KRT78 MUTATED KRT78 WILD-TYPE 
              7              55 
[1] "BCLAF1 MUTATION ANALYSIS"
[1] 3
  BCLAF1 MUTATED BCLAF1 WILD-TYPE 
              14               48 
  BCLAF1 MUTATED BCLAF1 WILD-TYPE 
              14               48 
[1] "LPAR1 MUTATION ANALYSIS"
[1] 3
  LPAR1 MUTATED LPAR1 WILD-TYPE 
              6              56 
  LPAR1 MUTATED LPAR1 WILD-TYPE 
              6              56 
[1] "STK31 MUTATION ANALYSIS"
[1] 3
  STK31 MUTATED STK31 WILD-TYPE 
             10              52 
  STK31 MUTATED STK31 WILD-TYPE 
             10              52 
[1] "HBG2 MUTATION ANALYSIS"
[1] 3
  HBG2 MUTATED HBG2 WILD-TYPE 
             4             58 
  HBG2 MUTATED HBG2 WILD-TYPE 
             4             58 
[1] "BAGE2 MUTATION ANALYSIS"
[1] 3
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              4              58 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              4              58 
[1] "ADH1B MUTATION ANALYSIS"
[1] 3
  ADH1B MUTATED ADH1B WILD-TYPE 
              6              56 
  ADH1B MUTATED ADH1B WILD-TYPE 
              6              56 
[1] "CNTN4 MUTATION ANALYSIS"
[1] 3
  CNTN4 MUTATED CNTN4 WILD-TYPE 
             12              50 
  CNTN4 MUTATED CNTN4 WILD-TYPE 
             12              50 
[1] "DEFA4 MUTATION ANALYSIS"
[1] 3
  DEFA4 MUTATED DEFA4 WILD-TYPE 
              5              57 
  DEFA4 MUTATED DEFA4 WILD-TYPE 
              5              57 
[1] "FAM117B MUTATION ANALYSIS"
[1] 3
  FAM117B MUTATED FAM117B WILD-TYPE 
                6                56 
  FAM117B MUTATED FAM117B WILD-TYPE 
                6                56 
[1] "GFRAL MUTATION ANALYSIS"
[1] 3
  GFRAL MUTATED GFRAL WILD-TYPE 
             10              52 
  GFRAL MUTATED GFRAL WILD-TYPE 
             10              52 
[1] "ST8SIA3 MUTATION ANALYSIS"
[1] 3
  ST8SIA3 MUTATED ST8SIA3 WILD-TYPE 
                8                54 
  ST8SIA3 MUTATED ST8SIA3 WILD-TYPE 
                8                54 
[1] "DSPP MUTATION ANALYSIS"
[1] 3
  DSPP MUTATED DSPP WILD-TYPE 
             9             53 
  DSPP MUTATED DSPP WILD-TYPE 
             9             53 
[1] "OR10K2 MUTATION ANALYSIS"
[1] 3
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               8               54 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               8               54 
[1] "CLEC17A MUTATION ANALYSIS"
[1] 3
  CLEC17A MUTATED CLEC17A WILD-TYPE 
                5                57 
  CLEC17A MUTATED CLEC17A WILD-TYPE 
                5                57 
[1] "POU6F2 MUTATION ANALYSIS"
[1] 3
  POU6F2 MUTATED POU6F2 WILD-TYPE 
               9               53 
  POU6F2 MUTATED POU6F2 WILD-TYPE 
               9               53 
[1] "LRRIQ3 MUTATION ANALYSIS"
[1] 3
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10               52 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10               52 
[1] "ARID2 MUTATION ANALYSIS"
[1] 3
  ARID2 MUTATED ARID2 WILD-TYPE 
             11              51 
  ARID2 MUTATED ARID2 WILD-TYPE 
             11              51 
[1] "GAS2 MUTATION ANALYSIS"
[1] 3
  GAS2 MUTATED GAS2 WILD-TYPE 
             7             55 
  GAS2 MUTATED GAS2 WILD-TYPE 
             7             55 
[1] "SIRPB1 MUTATION ANALYSIS"
[1] 3
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
               6               56 
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
               6               56 
[1] "ACTC1 MUTATION ANALYSIS"
[1] 3
  ACTC1 MUTATED ACTC1 WILD-TYPE 
              6              56 
  ACTC1 MUTATED ACTC1 WILD-TYPE 
              6              56 
[1] "PRB2 MUTATION ANALYSIS"
[1] 3
  PRB2 MUTATED PRB2 WILD-TYPE 
             9             53 
  PRB2 MUTATED PRB2 WILD-TYPE 
             9             53 
[1] "C15ORF23 MUTATION ANALYSIS"
[1] 3
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                 4                 58 
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                 4                 58 
[1] "FASLG MUTATION ANALYSIS"
[1] 3
  FASLG MUTATED FASLG WILD-TYPE 
              5              57 
  FASLG MUTATED FASLG WILD-TYPE 
              5              57 
[1] "PAK7 MUTATION ANALYSIS"
[1] 3
  PAK7 MUTATED PAK7 WILD-TYPE 
            12             50 
  PAK7 MUTATED PAK7 WILD-TYPE 
            12             50 
[1] "SIGLEC14 MUTATION ANALYSIS"
[1] 3
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 6                 56 
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 6                 56 
[1] "TPTE2 MUTATION ANALYSIS"
[1] 3
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              8              54 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              8              54 
[1] "APBB1IP MUTATION ANALYSIS"
[1] 3
  APBB1IP MUTATED APBB1IP WILD-TYPE 
                6                56 
  APBB1IP MUTATED APBB1IP WILD-TYPE 
                6                56 
[1] "ANGPT1 MUTATION ANALYSIS"
[1] 3
  ANGPT1 MUTATED ANGPT1 WILD-TYPE 
               8               54 
  ANGPT1 MUTATED ANGPT1 WILD-TYPE 
               8               54 
[1] "ARL16 MUTATION ANALYSIS"
[1] 3
  ARL16 MUTATED ARL16 WILD-TYPE 
              3              59 
  ARL16 MUTATED ARL16 WILD-TYPE 
              3              59 
[1] "ARMC4 MUTATION ANALYSIS"
[1] 3
  ARMC4 MUTATED ARMC4 WILD-TYPE 
             15              47 
  ARMC4 MUTATED ARMC4 WILD-TYPE 
             15              47 
[1] "CD2 MUTATION ANALYSIS"
[1] 3
  CD2 MUTATED CD2 WILD-TYPE 
            3            59 
  CD2 MUTATED CD2 WILD-TYPE 
            3            59 
[1] "FRG2B MUTATION ANALYSIS"
[1] 3
  FRG2B MUTATED FRG2B WILD-TYPE 
              5              57 
  FRG2B MUTATED FRG2B WILD-TYPE 
              5              57 
[1] "KRTAP12-1 MUTATION ANALYSIS"
[1] 3
  KRTAP12-1 MUTATED KRTAP12-1 WILD-TYPE 
                  3                  59 
  KRTAP12-1 MUTATED KRTAP12-1 WILD-TYPE 
                  3                  59 
[1] "CYP4X1 MUTATION ANALYSIS"
[1] 3
  CYP4X1 MUTATED CYP4X1 WILD-TYPE 
               7               55 
  CYP4X1 MUTATED CYP4X1 WILD-TYPE 
               7               55 
[1] "DSG1 MUTATION ANALYSIS"
[1] 3
  DSG1 MUTATED DSG1 WILD-TYPE 
            14             48 
  DSG1 MUTATED DSG1 WILD-TYPE 
            14             48 
[1] "ADAM7 MUTATION ANALYSIS"
[1] 3
  ADAM7 MUTATED ADAM7 WILD-TYPE 
             13              49 
  ADAM7 MUTATED ADAM7 WILD-TYPE 
             13              49 
[1] "KCNQ5 MUTATION ANALYSIS"
[1] 3
  KCNQ5 MUTATED KCNQ5 WILD-TYPE 
             10              52 
  KCNQ5 MUTATED KCNQ5 WILD-TYPE 
             10              52 
[1] "POF1B MUTATION ANALYSIS"
[1] 3
  POF1B MUTATED POF1B WILD-TYPE 
             10              52 
  POF1B MUTATED POF1B WILD-TYPE 
             10              52 
[1] "TCEB3C MUTATION ANALYSIS"
[1] 3
  TCEB3C MUTATED TCEB3C WILD-TYPE 
               7               55 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
               7               55 
[1] "F2RL1 MUTATION ANALYSIS"
[1] 3
  F2RL1 MUTATED F2RL1 WILD-TYPE 
              6              56 
  F2RL1 MUTATED F2RL1 WILD-TYPE 
              6              56 
[1] "SNCAIP MUTATION ANALYSIS"
[1] 3
  SNCAIP MUTATED SNCAIP WILD-TYPE 
              12               50 
  SNCAIP MUTATED SNCAIP WILD-TYPE 
              12               50 
[1] "LOC649330 MUTATION ANALYSIS"
[1] 3
  LOC649330 MUTATED LOC649330 WILD-TYPE 
                  8                  54 
  LOC649330 MUTATED LOC649330 WILD-TYPE 
                  8                  54 
[1] "UGT2A3 MUTATION ANALYSIS"
[1] 3
  UGT2A3 MUTATED UGT2A3 WILD-TYPE 
               8               54 
  UGT2A3 MUTATED UGT2A3 WILD-TYPE 
               8               54 
[1] "C3ORF71 MUTATION ANALYSIS"
[1] 3
  C3ORF71 MUTATED C3ORF71 WILD-TYPE 
                3                59 
  C3ORF71 MUTATED C3ORF71 WILD-TYPE 
                3                59 
[1] "NDUFA13 MUTATION ANALYSIS"
[1] 3
  NDUFA13 MUTATED NDUFA13 WILD-TYPE 
                4                58 
  NDUFA13 MUTATED NDUFA13 WILD-TYPE 
                4                58 
[1] "ZIM3 MUTATION ANALYSIS"
[1] 3
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             8             54 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             8             54 
[1] "DDX3X MUTATION ANALYSIS"
[1] 3
  DDX3X MUTATED DDX3X WILD-TYPE 
              7              55 
  DDX3X MUTATED DDX3X WILD-TYPE 
              7              55 
[1] "LILRB4 MUTATION ANALYSIS"
[1] 3
  LILRB4 MUTATED LILRB4 WILD-TYPE 
               8               54 
  LILRB4 MUTATED LILRB4 WILD-TYPE 
               8               54 
[1] "TLR4 MUTATION ANALYSIS"
[1] 3
  TLR4 MUTATED TLR4 WILD-TYPE 
            11             51 
  TLR4 MUTATED TLR4 WILD-TYPE 
            11             51 
[1] "ZNF479 MUTATION ANALYSIS"
[1] 3
  ZNF479 MUTATED ZNF479 WILD-TYPE 
               5               57 
  ZNF479 MUTATED ZNF479 WILD-TYPE 
               5               57 
[1] "GABRG1 MUTATION ANALYSIS"
[1] 3
  GABRG1 MUTATED GABRG1 WILD-TYPE 
               8               54 
  GABRG1 MUTATED GABRG1 WILD-TYPE 
               8               54 
[1] "KLRC3 MUTATION ANALYSIS"
[1] 3
  KLRC3 MUTATED KLRC3 WILD-TYPE 
              4              58 
  KLRC3 MUTATED KLRC3 WILD-TYPE 
              4              58 
[1] "OR1N2 MUTATION ANALYSIS"
[1] 3
  OR1N2 MUTATED OR1N2 WILD-TYPE 
              7              55 
  OR1N2 MUTATED OR1N2 WILD-TYPE 
              7              55 
[1] "HHLA2 MUTATION ANALYSIS"
[1] 3
  HHLA2 MUTATED HHLA2 WILD-TYPE 
              6              56 
  HHLA2 MUTATED HHLA2 WILD-TYPE 
              6              56 
[1] "SYCE1 MUTATION ANALYSIS"
[1] 3
  SYCE1 MUTATED SYCE1 WILD-TYPE 
              6              56 
  SYCE1 MUTATED SYCE1 WILD-TYPE 
              6              56 
[1] "RGPD3 MUTATION ANALYSIS"
[1] 3
  RGPD3 MUTATED RGPD3 WILD-TYPE 
             12              50 
  RGPD3 MUTATED RGPD3 WILD-TYPE 
             12              50 
[1] "CDH10 MUTATION ANALYSIS"
[1] 3
  CDH10 MUTATED CDH10 WILD-TYPE 
             13              49 
  CDH10 MUTATED CDH10 WILD-TYPE 
             13              49 
[1] "C6ORF105 MUTATION ANALYSIS"
[1] 3
  C6ORF105 MUTATED C6ORF105 WILD-TYPE 
                 5                 57 
  C6ORF105 MUTATED C6ORF105 WILD-TYPE 
                 5                 57 
[1] "FPR2 MUTATION ANALYSIS"
[1] 3
  FPR2 MUTATED FPR2 WILD-TYPE 
             5             57 
  FPR2 MUTATED FPR2 WILD-TYPE 
             5             57 
[1] "UGT1A7 MUTATION ANALYSIS"
[1] 3
  UGT1A7 MUTATED UGT1A7 WILD-TYPE 
               4               58 
  UGT1A7 MUTATED UGT1A7 WILD-TYPE 
               4               58 
[1] "JAKMIP1 MUTATION ANALYSIS"
[1] 3
  JAKMIP1 MUTATED JAKMIP1 WILD-TYPE 
                9                53 
  JAKMIP1 MUTATED JAKMIP1 WILD-TYPE 
                9                53 
[1] "CYLC2 MUTATION ANALYSIS"
[1] 3
  CYLC2 MUTATED CYLC2 WILD-TYPE 
              6              56 
  CYLC2 MUTATED CYLC2 WILD-TYPE 
              6              56 
[1] "DRGX MUTATION ANALYSIS"
[1] 3
  DRGX MUTATED DRGX WILD-TYPE 
             6             56 
  DRGX MUTATED DRGX WILD-TYPE 
             6             56 
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
             5             57 
  IDH1 MUTATED IDH1 WILD-TYPE 
             5             57 
[1] "ASB5 MUTATION ANALYSIS"
[1] 3
  ASB5 MUTATED ASB5 WILD-TYPE 
             6             56 
  ASB5 MUTATED ASB5 WILD-TYPE 
             6             56 
[1] "COL21A1 MUTATION ANALYSIS"
[1] 3
  COL21A1 MUTATED COL21A1 WILD-TYPE 
               11                51 
  COL21A1 MUTATED COL21A1 WILD-TYPE 
               11                51 
[1] "OR4M2 MUTATION ANALYSIS"
[1] 3
  OR4M2 MUTATED OR4M2 WILD-TYPE 
              7              55 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
              7              55 
[1] "ANKRD45 MUTATION ANALYSIS"
[1] 3
  ANKRD45 MUTATED ANKRD45 WILD-TYPE 
                7                55 
  ANKRD45 MUTATED ANKRD45 WILD-TYPE 
                7                55 
[1] "LCE1B MUTATION ANALYSIS"
[1] 3
  LCE1B MUTATED LCE1B WILD-TYPE 
              5              57 
  LCE1B MUTATED LCE1B WILD-TYPE 
              5              57 
[1] "MGAM MUTATION ANALYSIS"
[1] 3
  MGAM MUTATED MGAM WILD-TYPE 
            21             41 
  MGAM MUTATED MGAM WILD-TYPE 
            21             41 
[1] "ACSM2B MUTATION ANALYSIS"
[1] 3
  ACSM2B MUTATED ACSM2B WILD-TYPE 
               9               53 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
               9               53 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 8 rows and 62 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 62 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=2, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CDKN2A MUTATION ANALYSIS
D1V1, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              7                9
  CLUS_2              3                9
  CLUS_3              2               18
  CLUS_4              0               14
D1V2, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               15
  CLUS_2              5               16
  CLUS_3              4               19
D1V3, binary
                  cls
clus                0  1
  CDKN2A MUTATED    3  5
  CDKN2A WILD-TYPE 17 15
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      3    5
  CDKN2A WILD-TYPE   17   15
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               17
  CLUS_2              5               15
D1V4, multiclass
D1V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              6               16
  CLUS_2              2               21
  CLUS_3              4               13
D1V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              4               10
  CLUS_2              3               21
  CLUS_3              5               19
D1V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               12
  CLUS_2              2                7
  CLUS_3              3               16
  CLUS_4              5               15
D1V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              1                6
  CLUS_2              2               12
  CLUS_3              9               32

Clustering(2) Variable = TP53 MUTATION ANALYSIS
D2V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            6             10
  CLUS_2            2             10
  CLUS_3            3             17
  CLUS_4            2             12
D2V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            3             18
  CLUS_3            9             14
D2V3, binary
                cls
clus              0  1
  TP53 MUTATED    4  3
  TP53 WILD-TYPE 16 17
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      4    3
  TP53 WILD-TYPE   16   17
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4             16
  CLUS_2            3             17
D2V4, multiclass
D2V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4             18
  CLUS_2            5             18
  CLUS_3            4             13
D2V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4             10
  CLUS_2            6             18
  CLUS_3            3             21
D2V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            3             11
  CLUS_2            2              7
  CLUS_3            2             17
  CLUS_4            6             14
D2V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            2              5
  CLUS_2            0             14
  CLUS_3           11             30

Clustering(3) Variable = MUM1L1 MUTATION ANALYSIS
D3V1, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              5               11
  CLUS_2              2               10
  CLUS_3              4               16
  CLUS_4              2               12
D3V2, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              3               15
  CLUS_2              6               15
  CLUS_3              4               19
D3V3, binary
                  cls
clus                0  1
  MUM1L1 MUTATED    2  6
  MUM1L1 WILD-TYPE 18 14
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MUM1L1 MUTATED      2    6
  MUM1L1 WILD-TYPE   18   14
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              2               18
  CLUS_2              6               14
D3V4, multiclass
D3V5, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              5               17
  CLUS_2              2               21
  CLUS_3              6               11
D3V6, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              6                8
  CLUS_2              2               22
  CLUS_3              5               19
D3V7, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              2               12
  CLUS_2              3                6
  CLUS_3              6               13
  CLUS_4              2               18
D3V8, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              2               12
  CLUS_3             10               31

Clustering(4) Variable = CD163L1 MUTATION ANALYSIS
D4V1, multiclass
        clus
vv       CD163L1 MUTATED CD163L1 WILD-TYPE
  CLUS_1               4                12
  CLUS_2               5                 7
  CLUS_3               7                13
  CLUS_4               5                 9
D4V2, multiclass
        clus
vv       CD163L1 MUTATED CD163L1 WILD-TYPE
  CLUS_1               2                16
  CLUS_2               7                14
  CLUS_3              12                11
D4V3, binary
                   cls
clus                 0  1
  CD163L1 MUTATED    7  7
  CD163L1 WILD-TYPE 13 13
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CD163L1 MUTATED      7    7
  CD163L1 WILD-TYPE   13   13
        clus
vv       CD163L1 MUTATED CD163L1 WILD-TYPE
  CLUS_1               7                13
  CLUS_2               7                13
D4V4, multiclass
D4V5, multiclass
        clus
vv       CD163L1 MUTATED CD163L1 WILD-TYPE
  CLUS_1               7                15
  CLUS_2               7                16
  CLUS_3               7                10
D4V6, multiclass
        clus
vv       CD163L1 MUTATED CD163L1 WILD-TYPE
  CLUS_1               4                10
  CLUS_2              10                14
  CLUS_3               7                17
D4V7, multiclass
        clus
vv       CD163L1 MUTATED CD163L1 WILD-TYPE
  CLUS_1               5                 9
  CLUS_2               5                 4
  CLUS_3               7                12
  CLUS_4               4                16
D4V8, multiclass
        clus
vv       CD163L1 MUTATED CD163L1 WILD-TYPE
  CLUS_1               3                 4
  CLUS_2               5                 9
  CLUS_3              13                28

Clustering(5) Variable = PSG4 MUTATION ANALYSIS
D5V1, multiclass
        clus
vv       PSG4 MUTATED PSG4 WILD-TYPE
  CLUS_1            3             13
  CLUS_2            4              8
  CLUS_3            5             15
  CLUS_4            0             14
D5V2, multiclass
        clus
vv       PSG4 MUTATED PSG4 WILD-TYPE
  CLUS_1            3             15
  CLUS_2            4             17
  CLUS_3            5             18
D5V3, binary
                cls
clus              0  1
  PSG4 MUTATED    4  4
  PSG4 WILD-TYPE 16 16
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG4 MUTATED      4    4
  PSG4 WILD-TYPE   16   16
        clus
vv       PSG4 MUTATED PSG4 WILD-TYPE
  CLUS_1            4             16
  CLUS_2            4             16
D5V4, multiclass
D5V5, multiclass
        clus
vv       PSG4 MUTATED PSG4 WILD-TYPE
  CLUS_1            3             19
  CLUS_2            5             18
  CLUS_3            4             13
D5V6, multiclass
        clus
vv       PSG4 MUTATED PSG4 WILD-TYPE
  CLUS_1            2             12
  CLUS_2            6             18
  CLUS_3            4             20
D5V7, multiclass
        clus
vv       PSG4 MUTATED PSG4 WILD-TYPE
  CLUS_1            3             11
  CLUS_2            2              7
  CLUS_3            1             18
  CLUS_4            6             14
D5V8, multiclass
        clus
vv       PSG4 MUTATED PSG4 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            2             12
  CLUS_3           10             31

Clustering(6) Variable = PPP6C MUTATION ANALYSIS
D6V1, multiclass
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             3              13
  CLUS_2             2              10
  CLUS_3             2              18
  CLUS_4             3              11
D6V2, multiclass
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             2              16
  CLUS_2             3              18
  CLUS_3             5              18
D6V3, binary
                 cls
clus               0  1
  PPP6C MUTATED    1  3
  PPP6C WILD-TYPE 19 17
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PPP6C MUTATED      1    3
  PPP6C WILD-TYPE   19   17
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             1              19
  CLUS_2             3              17
D6V4, multiclass
D6V5, multiclass
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             5              17
  CLUS_2             3              20
  CLUS_3             2              15
D6V6, multiclass
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             1              13
  CLUS_2             5              19
  CLUS_3             4              20
D6V7, multiclass
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             1              13
  CLUS_2             2               7
  CLUS_3             2              17
  CLUS_4             5              15
D6V8, multiclass
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             2               5
  CLUS_2             1              13
  CLUS_3             7              34

Clustering(7) Variable = ZNF99 MUTATION ANALYSIS
D7V1, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             4              12
  CLUS_2             6               6
  CLUS_3             3              17
  CLUS_4             3              11
D7V2, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             4              14
  CLUS_2             5              16
  CLUS_3             7              16
D7V3, binary
                 cls
clus               0  1
  ZNF99 MUTATED    5  9
  ZNF99 WILD-TYPE 15 11
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF99 MUTATED      5    9
  ZNF99 WILD-TYPE   15   11
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             5              15
  CLUS_2             9              11
D7V4, multiclass
D7V5, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             5              17
  CLUS_2             3              20
  CLUS_3             8               9
D7V6, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             5               9
  CLUS_2             6              18
  CLUS_3             5              19
D7V7, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             3              11
  CLUS_2             2               7
  CLUS_3             7              12
  CLUS_4             4              16
D7V8, multiclass
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             5               9
  CLUS_3            10              31

Clustering(8) Variable = KHDRBS2 MUTATION ANALYSIS
D8V1, multiclass
        clus
vv       KHDRBS2 MUTATED KHDRBS2 WILD-TYPE
  CLUS_1               3                13
  CLUS_2               4                 8
  CLUS_3               2                18
  CLUS_4               1                13
D8V2, multiclass
        clus
vv       KHDRBS2 MUTATED KHDRBS2 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               3                18
  CLUS_3               6                17
D8V3, binary
                   cls
clus                 0  1
  KHDRBS2 MUTATED    2  7
  KHDRBS2 WILD-TYPE 18 13
[1] "tbl2"
                   cls
clus                [,1] [,2]
  KHDRBS2 MUTATED      2    7
  KHDRBS2 WILD-TYPE   18   13
        clus
vv       KHDRBS2 MUTATED KHDRBS2 WILD-TYPE
  CLUS_1               2                18
  CLUS_2               7                13
D8V4, multiclass
D8V5, multiclass
        clus
vv       KHDRBS2 MUTATED KHDRBS2 WILD-TYPE
  CLUS_1               1                21
  CLUS_2               6                17
  CLUS_3               3                14
D8V6, multiclass
        clus
vv       KHDRBS2 MUTATED KHDRBS2 WILD-TYPE
  CLUS_1               2                12
  CLUS_2               7                17
  CLUS_3               1                23
D8V7, multiclass
        clus
vv       KHDRBS2 MUTATED KHDRBS2 WILD-TYPE
  CLUS_1               1                13
  CLUS_2               3                 6
  CLUS_3               3                16
  CLUS_4               3                17
D8V8, multiclass
        clus
vv       KHDRBS2 MUTATED KHDRBS2 WILD-TYPE
  CLUS_1               2                 5
  CLUS_2               2                12
  CLUS_3               6                35

Clustering(9) Variable = POTEG MUTATION ANALYSIS
D9V1, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             4              12
  CLUS_2             1              11
  CLUS_3             1              19
  CLUS_4             4              10
D9V2, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             3              15
  CLUS_2             2              19
  CLUS_3             5              18
D9V3, binary
                 cls
clus               0  1
  POTEG MUTATED    5  3
  POTEG WILD-TYPE 15 17
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEG MUTATED      5    3
  POTEG WILD-TYPE   15   17
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             5              15
  CLUS_2             3              17
D9V4, multiclass
D9V5, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             5              17
  CLUS_2             3              20
  CLUS_3             2              15
D9V6, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             3              11
  CLUS_2             2              22
  CLUS_3             5              19
D9V7, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             0              14
  CLUS_2             1               8
  CLUS_3             5              14
  CLUS_4             4              16
D9V8, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2              12
  CLUS_3             8              33

Clustering(10) Variable = MARCO MUTATION ANALYSIS
D10V1, multiclass
        clus
vv       MARCO MUTATED MARCO WILD-TYPE
  CLUS_1             4              12
  CLUS_2             4               8
  CLUS_3             5              15
  CLUS_4             0              14
D10V2, multiclass
        clus
vv       MARCO MUTATED MARCO WILD-TYPE
  CLUS_1             2              16
  CLUS_2             6              15
  CLUS_3             5              18
D10V3, binary
                 cls
clus               0  1
  MARCO MUTATED    3  6
  MARCO WILD-TYPE 17 14
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MARCO MUTATED      3    6
  MARCO WILD-TYPE   17   14
        clus
vv       MARCO MUTATED MARCO WILD-TYPE
  CLUS_1             3              17
  CLUS_2             6              14
D10V4, multiclass
D10V5, multiclass
        clus
vv       MARCO MUTATED MARCO WILD-TYPE
  CLUS_1             2              20
  CLUS_2             8              15
  CLUS_3             3              14
D10V6, multiclass
        clus
vv       MARCO MUTATED MARCO WILD-TYPE
  CLUS_1             1              13
  CLUS_2             9              15
  CLUS_3             3              21
D10V7, multiclass
        clus
vv       MARCO MUTATED MARCO WILD-TYPE
  CLUS_1             2              12
  CLUS_2             4               5
  CLUS_3             4              15
  CLUS_4             3              17
D10V8, multiclass
        clus
vv       MARCO MUTATED MARCO WILD-TYPE
  CLUS_1             3               4
  CLUS_2             2              12
  CLUS_3             8              33

Clustering(11) Variable = SGCZ MUTATION ANALYSIS
D11V1, multiclass
        clus
vv       SGCZ MUTATED SGCZ WILD-TYPE
  CLUS_1            2             14
  CLUS_2            2             10
  CLUS_3            2             18
  CLUS_4            3             11
D11V2, multiclass
        clus
vv       SGCZ MUTATED SGCZ WILD-TYPE
  CLUS_1            2             16
  CLUS_2            5             16
  CLUS_3            2             21
D11V3, binary
                cls
clus              0  1
  SGCZ MUTATED    0  6
  SGCZ WILD-TYPE 20 14
[1] "tbl2"
                cls
clus             [,1] [,2]
  SGCZ MUTATED      0    6
  SGCZ WILD-TYPE   20   14
        clus
vv       SGCZ MUTATED SGCZ WILD-TYPE
  CLUS_1            0             20
  CLUS_2            6             14
D11V4, multiclass
D11V5, multiclass
        clus
vv       SGCZ MUTATED SGCZ WILD-TYPE
  CLUS_1            3             19
  CLUS_2            4             19
  CLUS_3            2             15
D11V6, multiclass
        clus
vv       SGCZ MUTATED SGCZ WILD-TYPE
  CLUS_1            1             13
  CLUS_2            5             19
  CLUS_3            3             21
D11V7, multiclass
        clus
vv       SGCZ MUTATED SGCZ WILD-TYPE
  CLUS_1            1             13
  CLUS_2            2              7
  CLUS_3            3             16
  CLUS_4            3             17
D11V8, multiclass
        clus
vv       SGCZ MUTATED SGCZ WILD-TYPE
  CLUS_1            1              6
  CLUS_2            2             12
  CLUS_3            6             35

Clustering(12) Variable = GLRB MUTATION ANALYSIS
D12V1, multiclass
        clus
vv       GLRB MUTATED GLRB WILD-TYPE
  CLUS_1            3             13
  CLUS_2            2             10
  CLUS_3            4             16
  CLUS_4            1             13
D12V2, multiclass
        clus
vv       GLRB MUTATED GLRB WILD-TYPE
  CLUS_1            5             13
  CLUS_2            4             17
  CLUS_3            1             22
D12V3, binary
                cls
clus              0  1
  GLRB MUTATED    2  5
  GLRB WILD-TYPE 18 15
[1] "tbl2"
                cls
clus             [,1] [,2]
  GLRB MUTATED      2    5
  GLRB WILD-TYPE   18   15
        clus
vv       GLRB MUTATED GLRB WILD-TYPE
  CLUS_1            2             18
  CLUS_2            5             15
D12V4, multiclass
D12V5, multiclass
        clus
vv       GLRB MUTATED GLRB WILD-TYPE
  CLUS_1            4             18
  CLUS_2            2             21
  CLUS_3            4             13
D12V6, multiclass
        clus
vv       GLRB MUTATED GLRB WILD-TYPE
  CLUS_1            3             11
  CLUS_2            3             21
  CLUS_3            4             20
D12V7, multiclass
        clus
vv       GLRB MUTATED GLRB WILD-TYPE
  CLUS_1            2             12
  CLUS_2            1              8
  CLUS_3            5             14
  CLUS_4            2             18
D12V8, multiclass
        clus
vv       GLRB MUTATED GLRB WILD-TYPE
  CLUS_1            0              7
  CLUS_2            3             11
  CLUS_3            7             34

Clustering(13) Variable = OR2W1 MUTATION ANALYSIS
D13V1, multiclass
        clus
vv       OR2W1 MUTATED OR2W1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             1              11
  CLUS_3             6              14
  CLUS_4             0              14
D13V2, multiclass
        clus
vv       OR2W1 MUTATED OR2W1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             5              16
  CLUS_3             3              20
D13V3, binary
                 cls
clus               0  1
  OR2W1 MUTATED    3  2
  OR2W1 WILD-TYPE 17 18
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2W1 MUTATED      3    2
  OR2W1 WILD-TYPE   17   18
        clus
vv       OR2W1 MUTATED OR2W1 WILD-TYPE
  CLUS_1             3              17
  CLUS_2             2              18
D13V4, multiclass
D13V5, multiclass
        clus
vv       OR2W1 MUTATED OR2W1 WILD-TYPE
  CLUS_1             2              20
  CLUS_2             4              19
  CLUS_3             2              15
D13V6, multiclass
        clus
vv       OR2W1 MUTATED OR2W1 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             4              20
  CLUS_3             3              21
D13V7, multiclass
        clus
vv       OR2W1 MUTATED OR2W1 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             3               6
  CLUS_3             3              16
  CLUS_4             2              18
D13V8, multiclass
        clus
vv       OR2W1 MUTATED OR2W1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2              12
  CLUS_3             5              36

Clustering(14) Variable = C4ORF22 MUTATION ANALYSIS
D14V1, multiclass
        clus
vv       C4ORF22 MUTATED C4ORF22 WILD-TYPE
  CLUS_1               2                14
  CLUS_2               2                10
  CLUS_3               1                19
  CLUS_4               2                12
D14V2, multiclass
        clus
vv       C4ORF22 MUTATED C4ORF22 WILD-TYPE
  CLUS_1               2                16
  CLUS_2               2                19
  CLUS_3               3                20
D14V3, binary
                   cls
clus                 0  1
  C4ORF22 MUTATED    0  4
  C4ORF22 WILD-TYPE 20 16
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C4ORF22 MUTATED      0    4
  C4ORF22 WILD-TYPE   20   16
        clus
vv       C4ORF22 MUTATED C4ORF22 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               4                16
D14V4, multiclass
D14V5, multiclass
        clus
vv       C4ORF22 MUTATED C4ORF22 WILD-TYPE
  CLUS_1               2                20
  CLUS_2               1                22
  CLUS_3               4                13
D14V6, multiclass
        clus
vv       C4ORF22 MUTATED C4ORF22 WILD-TYPE
  CLUS_1               2                12
  CLUS_2               2                22
  CLUS_3               3                21
D14V7, multiclass
        clus
vv       C4ORF22 MUTATED C4ORF22 WILD-TYPE
  CLUS_1               1                13
  CLUS_2               1                 8
  CLUS_3               2                17
  CLUS_4               3                17
D14V8, multiclass
        clus
vv       C4ORF22 MUTATED C4ORF22 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               1                13
  CLUS_3               6                35

Clustering(15) Variable = UGT2B28 MUTATION ANALYSIS
D15V1, multiclass
        clus
vv       UGT2B28 MUTATED UGT2B28 WILD-TYPE
  CLUS_1               2                14
  CLUS_2               3                 9
  CLUS_3               3                17
  CLUS_4               3                11
D15V2, multiclass
        clus
vv       UGT2B28 MUTATED UGT2B28 WILD-TYPE
  CLUS_1               2                16
  CLUS_2               2                19
  CLUS_3               7                16
D15V3, binary
                   cls
clus                 0  1
  UGT2B28 MUTATED    3  5
  UGT2B28 WILD-TYPE 17 15
[1] "tbl2"
                   cls
clus                [,1] [,2]
  UGT2B28 MUTATED      3    5
  UGT2B28 WILD-TYPE   17   15
        clus
vv       UGT2B28 MUTATED UGT2B28 WILD-TYPE
  CLUS_1               3                17
  CLUS_2               5                15
D15V4, multiclass
D15V5, multiclass
        clus
vv       UGT2B28 MUTATED UGT2B28 WILD-TYPE
  CLUS_1               3                19
  CLUS_2               4                19
  CLUS_3               4                13
D15V6, multiclass
        clus
vv       UGT2B28 MUTATED UGT2B28 WILD-TYPE
  CLUS_1               4                10
  CLUS_2               4                20
  CLUS_3               3                21
D15V7, multiclass
        clus
vv       UGT2B28 MUTATED UGT2B28 WILD-TYPE
  CLUS_1               2                12
  CLUS_2               3                 6
  CLUS_3               1                18
  CLUS_4               5                15
D15V8, multiclass
        clus
vv       UGT2B28 MUTATED UGT2B28 WILD-TYPE
  CLUS_1               2                 5
  CLUS_2               2                12
  CLUS_3               7                34

Clustering(16) Variable = ZNF676 MUTATION ANALYSIS
D16V1, multiclass
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              4               12
  CLUS_2              4                8
  CLUS_3              3               17
  CLUS_4              0               14
D16V2, multiclass
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              3               15
  CLUS_2              5               16
  CLUS_3              3               20
D16V3, binary
                  cls
clus                0  1
  ZNF676 MUTATED    3  5
  ZNF676 WILD-TYPE 17 15
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF676 MUTATED      3    5
  ZNF676 WILD-TYPE   17   15
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              3               17
  CLUS_2              5               15
D16V4, multiclass
D16V5, multiclass
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              3               19
  CLUS_2              4               19
  CLUS_3              4               13
D16V6, multiclass
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              2               12
  CLUS_2              5               19
  CLUS_3              4               20
D16V7, multiclass
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              3               11
  CLUS_2              1                8
  CLUS_3              4               15
  CLUS_4              3               17
D16V8, multiclass
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              4               10
  CLUS_3              7               34

Clustering(17) Variable = LIPI MUTATION ANALYSIS
D17V1, multiclass
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            3             13
  CLUS_2            2             10
  CLUS_3            3             17
  CLUS_4            1             13
D17V2, multiclass
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            3             15
  CLUS_2            3             18
  CLUS_3            3             20
D17V3, binary
                cls
clus              0  1
  LIPI MUTATED    2  2
  LIPI WILD-TYPE 18 18
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIPI MUTATED      2    2
  LIPI WILD-TYPE   18   18
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            2             18
  CLUS_2            2             18
D17V4, multiclass
D17V5, multiclass
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            2             20
  CLUS_2            6             17
  CLUS_3            1             16
D17V6, multiclass
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            2             12
  CLUS_2            4             20
  CLUS_3            3             21
D17V7, multiclass
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            1             13
  CLUS_2            1              8
  CLUS_3            2             17
  CLUS_4            5             15
D17V8, multiclass
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            1              6
  CLUS_2            1             13
  CLUS_3            7             34

Clustering(18) Variable = CADM2 MUTATION ANALYSIS
D18V1, multiclass
        clus
vv       CADM2 MUTATED CADM2 WILD-TYPE
  CLUS_1             4              12
  CLUS_2             2              10
  CLUS_3             2              18
  CLUS_4             0              14
D18V2, multiclass
        clus
vv       CADM2 MUTATED CADM2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             2              19
  CLUS_3             5              18
D18V3, binary
                 cls
clus               0  1
  CADM2 MUTATED    2  2
  CADM2 WILD-TYPE 18 18
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CADM2 MUTATED      2    2
  CADM2 WILD-TYPE   18   18
        clus
vv       CADM2 MUTATED CADM2 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             2              18
D18V4, multiclass
D18V5, multiclass
        clus
vv       CADM2 MUTATED CADM2 WILD-TYPE
  CLUS_1             3              19
  CLUS_2             2              21
  CLUS_3             3              14
D18V6, multiclass
        clus
vv       CADM2 MUTATED CADM2 WILD-TYPE
  CLUS_1             2              12
  CLUS_2             3              21
  CLUS_3             3              21
D18V7, multiclass
        clus
vv       CADM2 MUTATED CADM2 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             3               6
  CLUS_3             2              17
  CLUS_4             2              18
D18V8, multiclass
        clus
vv       CADM2 MUTATED CADM2 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             4              10
  CLUS_3             2              39

Clustering(19) Variable = CDH9 MUTATION ANALYSIS
D19V1, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            2             10
  CLUS_3            4             16
  CLUS_4            3             11
D19V2, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            3             18
  CLUS_3            7             16
D19V3, binary
                cls
clus              0  1
  CDH9 MUTATED    5  3
  CDH9 WILD-TYPE 15 17
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED      5    3
  CDH9 WILD-TYPE   15   17
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            5             15
  CLUS_2            3             17
D19V4, multiclass
D19V5, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            3             19
  CLUS_2            3             20
  CLUS_3            5             12
D19V6, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            4             10
  CLUS_2            4             20
  CLUS_3            3             21
D19V7, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            3             11
  CLUS_2            1              8
  CLUS_3            2             17
  CLUS_4            5             15
D19V8, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            3             11
  CLUS_3            8             33

Clustering(20) Variable = OR52E2 MUTATION ANALYSIS
D20V1, multiclass
        clus
vv       OR52E2 MUTATED OR52E2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              0               12
  CLUS_3              3               17
  CLUS_4              4               10
D20V2, multiclass
        clus
vv       OR52E2 MUTATED OR52E2 WILD-TYPE
  CLUS_1              3               15
  CLUS_2              2               19
  CLUS_3              2               21
D20V3, binary
                  cls
clus                0  1
  OR52E2 MUTATED    4  2
  OR52E2 WILD-TYPE 16 18
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52E2 MUTATED      4    2
  OR52E2 WILD-TYPE   16   18
        clus
vv       OR52E2 MUTATED OR52E2 WILD-TYPE
  CLUS_1              4               16
  CLUS_2              2               18
D20V4, multiclass
D20V5, multiclass
        clus
vv       OR52E2 MUTATED OR52E2 WILD-TYPE
  CLUS_1              2               20
  CLUS_2              3               20
  CLUS_3              2               15
D20V6, multiclass
        clus
vv       OR52E2 MUTATED OR52E2 WILD-TYPE
  CLUS_1              1               13
  CLUS_2              4               20
  CLUS_3              2               22
D20V7, multiclass
        clus
vv       OR52E2 MUTATED OR52E2 WILD-TYPE
  CLUS_1              2               12
  CLUS_2              1                8
  CLUS_3              2               17
  CLUS_4              2               18
D20V8, multiclass
        clus
vv       OR52E2 MUTATED OR52E2 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              2               12
  CLUS_3              4               37

Clustering(21) Variable = CLEC5A MUTATION ANALYSIS
D21V1, multiclass
        clus
vv       CLEC5A MUTATED CLEC5A WILD-TYPE
  CLUS_1              3               13
  CLUS_2              0               12
  CLUS_3              2               18
  CLUS_4              0               14
D21V2, multiclass
        clus
vv       CLEC5A MUTATED CLEC5A WILD-TYPE
  CLUS_1              1               17
  CLUS_2              3               18
  CLUS_3              1               22
D21V3, binary
                  cls
clus                0  1
  CLEC5A MUTATED    0  4
  CLEC5A WILD-TYPE 20 16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLEC5A MUTATED      0    4
  CLEC5A WILD-TYPE   20   16
        clus
vv       CLEC5A MUTATED CLEC5A WILD-TYPE
  CLUS_1              0               20
  CLUS_2              4               16
D21V4, multiclass
D21V5, multiclass
        clus
vv       CLEC5A MUTATED CLEC5A WILD-TYPE
  CLUS_1              0               22
  CLUS_2              3               20
  CLUS_3              2               15
D21V6, multiclass
        clus
vv       CLEC5A MUTATED CLEC5A WILD-TYPE
  CLUS_1              2               12
  CLUS_2              3               21
  CLUS_3              0               24
D21V7, multiclass
        clus
vv       CLEC5A MUTATED CLEC5A WILD-TYPE
  CLUS_1              2               12
  CLUS_2              0                9
  CLUS_3              3               16
  CLUS_4              0               20
D21V8, multiclass
        clus
vv       CLEC5A MUTATED CLEC5A WILD-TYPE
  CLUS_1              0                7
  CLUS_2              1               13
  CLUS_3              4               37

Clustering(22) Variable = HIST1H2AA MUTATION ANALYSIS
D22V1, multiclass
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 1                  15
  CLUS_2                 1                  11
  CLUS_3                 2                  18
  CLUS_4                 1                  13
D22V2, multiclass
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 1                  17
  CLUS_2                 1                  20
  CLUS_3                 3                  20
D22V3, binary
                     cls
clus                   0  1
  HIST1H2AA MUTATED    2  1
  HIST1H2AA WILD-TYPE 18 19
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  HIST1H2AA MUTATED      2    1
  HIST1H2AA WILD-TYPE   18   19
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 2                  18
  CLUS_2                 1                  19
D22V4, multiclass
D22V5, multiclass
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 2                  20
  CLUS_2                 1                  22
  CLUS_3                 2                  15
D22V6, multiclass
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 0                  14
  CLUS_2                 3                  21
  CLUS_3                 2                  22
D22V7, multiclass
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 0                  14
  CLUS_2                 2                   7
  CLUS_3                 1                  18
  CLUS_4                 2                  18
D22V8, multiclass
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 2                   5
  CLUS_2                 1                  13
  CLUS_3                 2                  39

Clustering(23) Variable = KIAA1257 MUTATION ANALYSIS
D23V1, multiclass
        clus
vv       KIAA1257 MUTATED KIAA1257 WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                2                 10
  CLUS_3                2                 18
  CLUS_4                1                 13
D23V2, multiclass
        clus
vv       KIAA1257 MUTATED KIAA1257 WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                2                 19
  CLUS_3                2                 21
D23V3, binary
                    cls
clus                  0  1
  KIAA1257 MUTATED    0  6
  KIAA1257 WILD-TYPE 20 14
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1257 MUTATED      0    6
  KIAA1257 WILD-TYPE   20   14
        clus
vv       KIAA1257 MUTATED KIAA1257 WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                6                 14
D23V4, multiclass
D23V5, multiclass
        clus
vv       KIAA1257 MUTATED KIAA1257 WILD-TYPE
  CLUS_1                3                 19
  CLUS_2                2                 21
  CLUS_3                3                 14
D23V6, multiclass
        clus
vv       KIAA1257 MUTATED KIAA1257 WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                3                 21
  CLUS_3                3                 21
D23V7, multiclass
        clus
vv       KIAA1257 MUTATED KIAA1257 WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                0                  9
  CLUS_3                2                 17
  CLUS_4                3                 17
D23V8, multiclass
        clus
vv       KIAA1257 MUTATED KIAA1257 WILD-TYPE
  CLUS_1                0                  7
  CLUS_2                2                 12
  CLUS_3                6                 35

Clustering(24) Variable = PCDH18 MUTATION ANALYSIS
D24V1, multiclass
        clus
vv       PCDH18 MUTATED PCDH18 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              4                8
  CLUS_3              7               13
  CLUS_4              2               12
D24V2, multiclass
        clus
vv       PCDH18 MUTATED PCDH18 WILD-TYPE
  CLUS_1              4               14
  CLUS_2              6               15
  CLUS_3              6               17
D24V3, binary
                  cls
clus                0  1
  PCDH18 MUTATED    4  7
  PCDH18 WILD-TYPE 16 13
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH18 MUTATED      4    7
  PCDH18 WILD-TYPE   16   13
        clus
vv       PCDH18 MUTATED PCDH18 WILD-TYPE
  CLUS_1              4               16
  CLUS_2              7               13
D24V4, multiclass
D24V5, multiclass
        clus
vv       PCDH18 MUTATED PCDH18 WILD-TYPE
  CLUS_1              3               19
  CLUS_2              9               14
  CLUS_3              4               13
D24V6, multiclass
        clus
vv       PCDH18 MUTATED PCDH18 WILD-TYPE
  CLUS_1              3               11
  CLUS_2              8               16
  CLUS_3              5               19
D24V7, multiclass
        clus
vv       PCDH18 MUTATED PCDH18 WILD-TYPE
  CLUS_1              3               11
  CLUS_2              2                7
  CLUS_3              6               13
  CLUS_4              5               15
D24V8, multiclass
        clus
vv       PCDH18 MUTATED PCDH18 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              6                8
  CLUS_3              9               32

Clustering(25) Variable = SPOCK3 MUTATION ANALYSIS
D25V1, multiclass
        clus
vv       SPOCK3 MUTATED SPOCK3 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              4                8
  CLUS_3              1               19
  CLUS_4              3               11
D25V2, multiclass
        clus
vv       SPOCK3 MUTATED SPOCK3 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              1               20
  CLUS_3              6               17
D25V3, binary
                  cls
clus                0  1
  SPOCK3 MUTATED    2  5
  SPOCK3 WILD-TYPE 18 15
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPOCK3 MUTATED      2    5
  SPOCK3 WILD-TYPE   18   15
        clus
vv       SPOCK3 MUTATED SPOCK3 WILD-TYPE
  CLUS_1              2               18
  CLUS_2              5               15
D25V4, multiclass
D25V5, multiclass
        clus
vv       SPOCK3 MUTATED SPOCK3 WILD-TYPE
  CLUS_1              2               20
  CLUS_2              4               19
  CLUS_3              3               14
D25V6, multiclass
        clus
vv       SPOCK3 MUTATED SPOCK3 WILD-TYPE
  CLUS_1              2               12
  CLUS_2              5               19
  CLUS_3              2               22
D25V7, multiclass
        clus
vv       SPOCK3 MUTATED SPOCK3 WILD-TYPE
  CLUS_1              3               11
  CLUS_2              3                6
  CLUS_3              1               18
  CLUS_4              2               18
D25V8, multiclass
        clus
vv       SPOCK3 MUTATED SPOCK3 WILD-TYPE
  CLUS_1              2                5
  CLUS_2              1               13
  CLUS_3              6               35

Clustering(26) Variable = OR2G6 MUTATION ANALYSIS
D26V1, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              11
  CLUS_3             4              16
  CLUS_4             3              11
D26V2, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1              20
  CLUS_3             8              15
D26V3, binary
                 cls
clus               0  1
  OR2G6 MUTATED    3  3
  OR2G6 WILD-TYPE 17 17
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2G6 MUTATED      3    3
  OR2G6 WILD-TYPE   17   17
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             3              17
  CLUS_2             3              17
D26V4, multiclass
D26V5, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             3              19
  CLUS_2             5              18
  CLUS_3             2              15
D26V6, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             5              19
  CLUS_3             4              20
D26V7, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             2              12
  CLUS_2             2               7
  CLUS_3             3              16
  CLUS_4             3              17
D26V8, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             4              10
  CLUS_3             5              36

Clustering(27) Variable = STXBP5L MUTATION ANALYSIS
D27V1, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               5                11
  CLUS_2               4                 8
  CLUS_3               3                17
  CLUS_4               2                12
D27V2, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               6                12
  CLUS_2               5                16
  CLUS_3               3                20
D27V3, binary
                   cls
clus                 0  1
  STXBP5L MUTATED    4  7
  STXBP5L WILD-TYPE 16 13
[1] "tbl2"
                   cls
clus                [,1] [,2]
  STXBP5L MUTATED      4    7
  STXBP5L WILD-TYPE   16   13
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               4                16
  CLUS_2               7                13
D27V4, multiclass
D27V5, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               6                16
  CLUS_2               6                17
  CLUS_3               2                15
D27V6, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               1                13
  CLUS_2               7                17
  CLUS_3               6                18
D27V7, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               3                11
  CLUS_2               3                 6
  CLUS_3               6                13
  CLUS_4               2                18
D27V8, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               2                 5
  CLUS_2               3                11
  CLUS_3               9                32

Clustering(28) Variable = CNGB3 MUTATION ANALYSIS
D28V1, multiclass
        clus
vv       CNGB3 MUTATED CNGB3 WILD-TYPE
  CLUS_1             4              12
  CLUS_2             4               8
  CLUS_3             3              17
  CLUS_4             4              10
D28V2, multiclass
        clus
vv       CNGB3 MUTATED CNGB3 WILD-TYPE
  CLUS_1             4              14
  CLUS_2             4              17
  CLUS_3             7              16
D28V3, binary
                 cls
clus               0  1
  CNGB3 MUTATED    1  9
  CNGB3 WILD-TYPE 19 11
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGB3 MUTATED      1    9
  CNGB3 WILD-TYPE   19   11
        clus
vv       CNGB3 MUTATED CNGB3 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             9              11
D28V4, multiclass
D28V5, multiclass
        clus
vv       CNGB3 MUTATED CNGB3 WILD-TYPE
  CLUS_1             5              17
  CLUS_2             4              19
  CLUS_3             6              11
D28V6, multiclass
        clus
vv       CNGB3 MUTATED CNGB3 WILD-TYPE
  CLUS_1             6               8
  CLUS_2             4              20
  CLUS_3             5              19
D28V7, multiclass
        clus
vv       CNGB3 MUTATED CNGB3 WILD-TYPE
  CLUS_1             3              11
  CLUS_2             2               7
  CLUS_3             4              15
  CLUS_4             6              14
D28V8, multiclass
        clus
vv       CNGB3 MUTATED CNGB3 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             5               9
  CLUS_3            10              31

Clustering(29) Variable = HHIPL2 MUTATION ANALYSIS
D29V1, multiclass
        clus
vv       HHIPL2 MUTATED HHIPL2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              0               12
  CLUS_3              3               17
  CLUS_4              0               14
D29V2, multiclass
        clus
vv       HHIPL2 MUTATED HHIPL2 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              3               18
  CLUS_3              0               23
D29V3, binary
                  cls
clus                0  1
  HHIPL2 MUTATED    1  1
  HHIPL2 WILD-TYPE 19 19
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HHIPL2 MUTATED      1    1
  HHIPL2 WILD-TYPE   19   19
        clus
vv       HHIPL2 MUTATED HHIPL2 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              1               19
D29V4, multiclass
[1] "Remove cluster labels:" "HHIPL2 MUTATED"        
clus
  HHIPL2 MUTATED HHIPL2 WILD-TYPE 
               2               38 
      TCGA-D3-A1Q8       TCGA-D3-A1QB       TCGA-D3-A2JO       TCGA-DA-A1HV 
"HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" 
      TCGA-EE-A17X       TCGA-EE-A184       TCGA-EE-A185       TCGA-EE-A20C 
"HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" 
      TCGA-EE-A29G       TCGA-EE-A29L       TCGA-EE-A29R       TCGA-EE-A29S 
"HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" 
      TCGA-EE-A29V       TCGA-EE-A2A2       TCGA-EE-A2GL       TCGA-EE-A2GP 
"HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ML 
"HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" 
      TCGA-EE-A2MM       TCGA-EE-A2MN       TCGA-EE-A3AC       TCGA-ER-A195 
"HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" 
      TCGA-ER-A199       TCGA-ER-A19D       TCGA-ER-A19N       TCGA-ER-A2NC 
"HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" 
      TCGA-ER-A2NE       TCGA-ER-A2NH       TCGA-FS-A1YW       TCGA-FS-A1Z0 
"HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" 
      TCGA-FS-A1Z3       TCGA-FS-A1ZP       TCGA-FS-A1ZQ       TCGA-FS-A1ZT 
"HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268 
"HHIPL2 WILD-TYPE" "HHIPL2 WILD-TYPE" 
D29V5, multiclass
        clus
vv       HHIPL2 MUTATED HHIPL2 WILD-TYPE
  CLUS_1              2               20
  CLUS_2              2               21
  CLUS_3              0               17
D29V6, multiclass
        clus
vv       HHIPL2 MUTATED HHIPL2 WILD-TYPE
  CLUS_1              0               14
  CLUS_2              2               22
  CLUS_3              2               22
D29V7, multiclass
        clus
vv       HHIPL2 MUTATED HHIPL2 WILD-TYPE
  CLUS_1              1               13
  CLUS_2              0                9
  CLUS_3              2               17
  CLUS_4              1               19
D29V8, multiclass
        clus
vv       HHIPL2 MUTATED HHIPL2 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              1               13
  CLUS_3              3               38

Clustering(30) Variable = OR10G8 MUTATION ANALYSIS
D30V1, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              4                8
  CLUS_3              0               20
  CLUS_4              1               13
D30V2, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              3               15
  CLUS_2              0               21
  CLUS_3              3               20
D30V3, binary
                  cls
clus                0  1
  OR10G8 MUTATED    1  2
  OR10G8 WILD-TYPE 19 18
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G8 MUTATED      1    2
  OR10G8 WILD-TYPE   19   18
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              2               18
D30V4, multiclass
D30V5, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              5               17
  CLUS_2              0               23
  CLUS_3              1               16
D30V6, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              0               14
  CLUS_2              1               23
  CLUS_3              5               19
D30V7, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              2               12
  CLUS_2              0                9
  CLUS_3              1               18
  CLUS_4              3               17
D30V8, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              2               12
  CLUS_3              4               37

Clustering(31) Variable = UGT2B4 MUTATION ANALYSIS
D31V1, multiclass
        clus
vv       UGT2B4 MUTATED UGT2B4 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              3                9
  CLUS_3              3               17
  CLUS_4              2               12
D31V2, multiclass
        clus
vv       UGT2B4 MUTATED UGT2B4 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              3               18
  CLUS_3              6               17
D31V3, binary
                  cls
clus                0  1
  UGT2B4 MUTATED    4  3
  UGT2B4 WILD-TYPE 16 17
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UGT2B4 MUTATED      4    3
  UGT2B4 WILD-TYPE   16   17
        clus
vv       UGT2B4 MUTATED UGT2B4 WILD-TYPE
  CLUS_1              4               16
  CLUS_2              3               17
D31V4, multiclass
D31V5, multiclass
        clus
vv       UGT2B4 MUTATED UGT2B4 WILD-TYPE
  CLUS_1              4               18
  CLUS_2              3               20
  CLUS_3              4               13
D31V6, multiclass
        clus
vv       UGT2B4 MUTATED UGT2B4 WILD-TYPE
  CLUS_1              1               13
  CLUS_2              7               17
  CLUS_3              3               21
D31V7, multiclass
        clus
vv       UGT2B4 MUTATED UGT2B4 WILD-TYPE
  CLUS_1              1               13
  CLUS_2              3                6
  CLUS_3              1               18
  CLUS_4              6               14
D31V8, multiclass
        clus
vv       UGT2B4 MUTATED UGT2B4 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              2               12
  CLUS_3              8               33

Clustering(32) Variable = ZBBX MUTATION ANALYSIS
D32V1, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             10
  CLUS_3            5             15
  CLUS_4            3             11
D32V2, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            3             15
  CLUS_2            4             17
  CLUS_3            4             19
D32V3, binary
                cls
clus              0  1
  ZBBX MUTATED    4  4
  ZBBX WILD-TYPE 16 16
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZBBX MUTATED      4    4
  ZBBX WILD-TYPE   16   16
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            4             16
  CLUS_2            4             16
D32V4, multiclass
D32V5, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            3             19
  CLUS_2            6             17
  CLUS_3            2             15
D32V6, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            2             12
  CLUS_2            7             17
  CLUS_3            2             22
D32V7, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            2             12
  CLUS_2            2              7
  CLUS_3            1             18
  CLUS_4            6             14
D32V8, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            1              6
  CLUS_2            2             12
  CLUS_3            8             33

Clustering(33) Variable = C1QTNF9 MUTATION ANALYSIS
D33V1, multiclass
        clus
vv       C1QTNF9 MUTATED C1QTNF9 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               3                 9
  CLUS_3               2                18
  CLUS_4               0                14
D33V2, multiclass
        clus
vv       C1QTNF9 MUTATED C1QTNF9 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               3                18
  CLUS_3               2                21
D33V3, binary
                   cls
clus                 0  1
  C1QTNF9 MUTATED    0  2
  C1QTNF9 WILD-TYPE 20 18
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1QTNF9 MUTATED      0    2
  C1QTNF9 WILD-TYPE   20   18
        clus
vv       C1QTNF9 MUTATED C1QTNF9 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               2                18
D33V4, multiclass
[1] "Remove cluster labels:" "C1QTNF9 MUTATED"       
clus
  C1QTNF9 MUTATED C1QTNF9 WILD-TYPE 
                2                38 
       TCGA-D3-A1Q1        TCGA-D3-A1Q8        TCGA-D3-A2J8        TCGA-D3-A2JO 
"C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-EE-A17X        TCGA-EE-A184        TCGA-EE-A185 
"C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" 
       TCGA-EE-A20C        TCGA-EE-A29G        TCGA-EE-A29L        TCGA-EE-A29R 
"C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A2A2        TCGA-EE-A2GL 
"C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GU        TCGA-EE-A2MC        TCGA-EE-A2ML 
"C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" 
       TCGA-EE-A2MM        TCGA-EE-A2MN        TCGA-EE-A3AC        TCGA-ER-A195 
"C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" 
       TCGA-ER-A199        TCGA-ER-A19D        TCGA-ER-A19N        TCGA-ER-A2NC 
"C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" 
       TCGA-ER-A2NE        TCGA-ER-A2NH        TCGA-FS-A1YW        TCGA-FS-A1Z0 
"C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" 
       TCGA-FS-A1Z3        TCGA-FS-A1ZP        TCGA-FS-A1ZQ        TCGA-FS-A1ZT 
"C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268 
"C1QTNF9 WILD-TYPE" "C1QTNF9 WILD-TYPE" 
D33V5, multiclass
        clus
vv       C1QTNF9 MUTATED C1QTNF9 WILD-TYPE
  CLUS_1               2                20
  CLUS_2               3                20
  CLUS_3               1                16
D33V6, multiclass
        clus
vv       C1QTNF9 MUTATED C1QTNF9 WILD-TYPE
  CLUS_1               1                13
  CLUS_2               2                22
  CLUS_3               3                21
D33V7, multiclass
        clus
vv       C1QTNF9 MUTATED C1QTNF9 WILD-TYPE
  CLUS_1               2                12
  CLUS_2               1                 8
  CLUS_3               1                18
  CLUS_4               2                18
D33V8, multiclass
        clus
vv       C1QTNF9 MUTATED C1QTNF9 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               3                11
  CLUS_3               3                38

Clustering(34) Variable = HCRTR2 MUTATION ANALYSIS
D34V1, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              4               12
  CLUS_2              2               10
  CLUS_3              2               18
  CLUS_4              1               13
D34V2, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1               20
  CLUS_3              7               16
D34V3, binary
                  cls
clus                0  1
  HCRTR2 MUTATED    3  4
  HCRTR2 WILD-TYPE 17 16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HCRTR2 MUTATED      3    4
  HCRTR2 WILD-TYPE   17   16
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              3               17
  CLUS_2              4               16
D34V4, multiclass
D34V5, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              2               20
  CLUS_2              4               19
  CLUS_3              3               14
D34V6, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              2               12
  CLUS_2              5               19
  CLUS_3              2               22
D34V7, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              1               13
  CLUS_2              4                5
  CLUS_3              1               18
  CLUS_4              3               17
D34V8, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              2                5
  CLUS_2              1               13
  CLUS_3              6               35

Clustering(35) Variable = KRT78 MUTATION ANALYSIS
D35V1, multiclass
        clus
vv       KRT78 MUTATED KRT78 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             2              10
  CLUS_3             2              18
  CLUS_4             1              13
D35V2, multiclass
        clus
vv       KRT78 MUTATED KRT78 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             2              19
  CLUS_3             5              18
D35V3, binary
                 cls
clus               0  1
  KRT78 MUTATED    1  2
  KRT78 WILD-TYPE 19 18
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT78 MUTATED      1    2
  KRT78 WILD-TYPE   19   18
        clus
vv       KRT78 MUTATED KRT78 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             2              18
D35V4, multiclass
D35V5, multiclass
        clus
vv       KRT78 MUTATED KRT78 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             4              19
  CLUS_3             2              15
D35V6, multiclass
        clus
vv       KRT78 MUTATED KRT78 WILD-TYPE
  CLUS_1             2              12
  CLUS_2             3              21
  CLUS_3             2              22
D35V7, multiclass
        clus
vv       KRT78 MUTATED KRT78 WILD-TYPE
  CLUS_1             3              11
  CLUS_2             0               9
  CLUS_3             2              17
  CLUS_4             2              18
D35V8, multiclass
        clus
vv       KRT78 MUTATED KRT78 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             4              10
  CLUS_3             3              38

Clustering(36) Variable = BCLAF1 MUTATION ANALYSIS
D36V1, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              4               12
  CLUS_2              2               10
  CLUS_3              6               14
  CLUS_4              2               12
D36V2, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              5               16
  CLUS_3              7               16
D36V3, binary
                  cls
clus                0  1
  BCLAF1 MUTATED    4  6
  BCLAF1 WILD-TYPE 16 14
[1] "tbl2"
                  cls
clus               [,1] [,2]
  BCLAF1 MUTATED      4    6
  BCLAF1 WILD-TYPE   16   14
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              4               16
  CLUS_2              6               14
D36V4, multiclass
D36V5, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              4               18
  CLUS_2              6               17
  CLUS_3              4               13
D36V6, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              2               12
  CLUS_2              8               16
  CLUS_3              4               20
D36V7, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              1               13
  CLUS_2              3                6
  CLUS_3              6               13
  CLUS_4              4               16
D36V8, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              5                9
  CLUS_3              8               33

Clustering(37) Variable = LPAR1 MUTATION ANALYSIS
D37V1, multiclass
        clus
vv       LPAR1 MUTATED LPAR1 WILD-TYPE
  CLUS_1             3              13
  CLUS_2             1              11
  CLUS_3             2              18
  CLUS_4             0              14
D37V2, multiclass
        clus
vv       LPAR1 MUTATED LPAR1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             4              17
  CLUS_3             2              21
D37V3, binary
                 cls
clus               0  1
  LPAR1 MUTATED    2  3
  LPAR1 WILD-TYPE 18 17
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPAR1 MUTATED      2    3
  LPAR1 WILD-TYPE   18   17
        clus
vv       LPAR1 MUTATED LPAR1 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             3              17
D37V4, multiclass
D37V5, multiclass
        clus
vv       LPAR1 MUTATED LPAR1 WILD-TYPE
  CLUS_1             0              22
  CLUS_2             3              20
  CLUS_3             3              14
D37V6, multiclass
        clus
vv       LPAR1 MUTATED LPAR1 WILD-TYPE
  CLUS_1             2              12
  CLUS_2             4              20
  CLUS_3             0              24
D37V7, multiclass
        clus
vv       LPAR1 MUTATED LPAR1 WILD-TYPE
  CLUS_1             2              12
  CLUS_2             2               7
  CLUS_3             2              17
  CLUS_4             0              20
D37V8, multiclass
        clus
vv       LPAR1 MUTATED LPAR1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             0              14
  CLUS_3             5              36

Clustering(38) Variable = STK31 MUTATION ANALYSIS
D38V1, multiclass
        clus
vv       STK31 MUTATED STK31 WILD-TYPE
  CLUS_1             5              11
  CLUS_2             2              10
  CLUS_3             3              17
  CLUS_4             0              14
D38V2, multiclass
        clus
vv       STK31 MUTATED STK31 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             3              18
  CLUS_3             6              17
D38V3, binary
                 cls
clus               0  1
  STK31 MUTATED    3  1
  STK31 WILD-TYPE 17 19
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK31 MUTATED      3    1
  STK31 WILD-TYPE   17   19
        clus
vv       STK31 MUTATED STK31 WILD-TYPE
  CLUS_1             3              17
  CLUS_2             1              19
D38V4, multiclass
D38V5, multiclass
        clus
vv       STK31 MUTATED STK31 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             5              18
  CLUS_3             4              13
D38V6, multiclass
        clus
vv       STK31 MUTATED STK31 WILD-TYPE
  CLUS_1             3              11
  CLUS_2             5              19
  CLUS_3             2              22
D38V7, multiclass
        clus
vv       STK31 MUTATED STK31 WILD-TYPE
  CLUS_1             2              12
  CLUS_2             2               7
  CLUS_3             2              17
  CLUS_4             4              16
D38V8, multiclass
        clus
vv       STK31 MUTATED STK31 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2              12
  CLUS_3             7              34

Clustering(39) Variable = HBG2 MUTATION ANALYSIS
D39V1, multiclass
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            1             11
  CLUS_3            0             20
  CLUS_4            1             13
D39V2, multiclass
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            1             20
  CLUS_3            2             21
D39V3, binary
                cls
clus              0  1
  HBG2 MUTATED    1  2
  HBG2 WILD-TYPE 19 18
[1] "tbl2"
                cls
clus             [,1] [,2]
  HBG2 MUTATED      1    2
  HBG2 WILD-TYPE   19   18
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            2             18
D39V4, multiclass
D39V5, multiclass
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  CLUS_1            2             20
  CLUS_2            1             22
  CLUS_3            1             16
D39V6, multiclass
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  CLUS_1            1             13
  CLUS_2            1             23
  CLUS_3            2             22
D39V7, multiclass
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  CLUS_1            1             13
  CLUS_2            0              9
  CLUS_3            2             17
  CLUS_4            1             19
D39V8, multiclass
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1             13
  CLUS_3            3             38

Clustering(40) Variable = BAGE2 MUTATION ANALYSIS
D40V1, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             0              12
  CLUS_3             2              18
  CLUS_4             0              14
D40V2, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             2              19
  CLUS_3             1              22
D40V3, binary
                 cls
clus               0  1
  BAGE2 MUTATED    0  2
  BAGE2 WILD-TYPE 20 18
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BAGE2 MUTATED      0    2
  BAGE2 WILD-TYPE   20   18
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             2              18
D40V4, multiclass
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              2              38 
     TCGA-D3-A1Q1      TCGA-D3-A1Q8      TCGA-D3-A1QB      TCGA-D3-A2J8 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-D3-A2JO      TCGA-DA-A1HV      TCGA-EE-A17X      TCGA-EE-A184 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A20C      TCGA-EE-A29G      TCGA-EE-A29L      TCGA-EE-A29R 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A29S      TCGA-EE-A29V      TCGA-EE-A2A2      TCGA-EE-A2GL 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GU      TCGA-EE-A2MC      TCGA-EE-A2MD 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN      TCGA-EE-A3AC 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-ER-A199      TCGA-ER-A19D      TCGA-ER-A19N      TCGA-ER-A2NC 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-ER-A2NE      TCGA-ER-A2NH      TCGA-FS-A1YW      TCGA-FS-A1Z0 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-FS-A1Z3      TCGA-FS-A1ZP      TCGA-FS-A1ZQ      TCGA-FS-A1ZT 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
D40V5, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             0              22
  CLUS_2             1              22
  CLUS_3             3              14
D40V6, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             3              11
  CLUS_2             1              23
  CLUS_3             0              24
D40V7, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             0               9
  CLUS_3             3              16
  CLUS_4             1              19
D40V8, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2              12
  CLUS_3             2              39

Clustering(41) Variable = ADH1B MUTATION ANALYSIS
D41V1, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             1              15
  CLUS_2             1              11
  CLUS_3             2              18
  CLUS_4             2              12
D41V2, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             3              15
  CLUS_2             2              19
  CLUS_3             1              22
D41V3, binary
                 cls
clus               0  1
  ADH1B MUTATED    1  3
  ADH1B WILD-TYPE 19 17
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADH1B MUTATED      1    3
  ADH1B WILD-TYPE   19   17
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             1              19
  CLUS_2             3              17
D41V4, multiclass
D41V5, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             2              20
  CLUS_2             3              20
  CLUS_3             1              16
D41V6, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             1              13
  CLUS_2             3              21
  CLUS_3             2              22
D41V7, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             0              14
  CLUS_2             0               9
  CLUS_3             3              16
  CLUS_4             3              17
D41V8, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2              12
  CLUS_3             4              37

Clustering(42) Variable = CNTN4 MUTATION ANALYSIS
D42V1, multiclass
        clus
vv       CNTN4 MUTATED CNTN4 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3               9
  CLUS_3             5              15
  CLUS_4             3              11
D42V2, multiclass
        clus
vv       CNTN4 MUTATED CNTN4 WILD-TYPE
  CLUS_1             4              14
  CLUS_2             3              18
  CLUS_3             5              18
D42V3, binary
                 cls
clus               0  1
  CNTN4 MUTATED    6  4
  CNTN4 WILD-TYPE 14 16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN4 MUTATED      6    4
  CNTN4 WILD-TYPE   14   16
        clus
vv       CNTN4 MUTATED CNTN4 WILD-TYPE
  CLUS_1             6              14
  CLUS_2             4              16
D42V4, multiclass
D42V5, multiclass
        clus
vv       CNTN4 MUTATED CNTN4 WILD-TYPE
  CLUS_1             5              17
  CLUS_2             4              19
  CLUS_3             3              14
D42V6, multiclass
        clus
vv       CNTN4 MUTATED CNTN4 WILD-TYPE
  CLUS_1             2              12
  CLUS_2             5              19
  CLUS_3             5              19
D42V7, multiclass
        clus
vv       CNTN4 MUTATED CNTN4 WILD-TYPE
  CLUS_1             3              11
  CLUS_2             1               8
  CLUS_3             4              15
  CLUS_4             4              16
D42V8, multiclass
        clus
vv       CNTN4 MUTATED CNTN4 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             5               9
  CLUS_3             7              34

Clustering(43) Variable = DEFA4 MUTATION ANALYSIS
D43V1, multiclass
        clus
vv       DEFA4 MUTATED DEFA4 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             1              11
  CLUS_3             2              18
  CLUS_4             1              13
D43V2, multiclass
        clus
vv       DEFA4 MUTATED DEFA4 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             2              19
  CLUS_3             3              20
D43V3, binary
                 cls
clus               0  1
  DEFA4 MUTATED    2  2
  DEFA4 WILD-TYPE 18 18
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DEFA4 MUTATED      2    2
  DEFA4 WILD-TYPE   18   18
        clus
vv       DEFA4 MUTATED DEFA4 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             2              18
D43V4, multiclass
D43V5, multiclass
        clus
vv       DEFA4 MUTATED DEFA4 WILD-TYPE
  CLUS_1             3              19
  CLUS_2             0              23
  CLUS_3             2              15
D43V6, multiclass
        clus
vv       DEFA4 MUTATED DEFA4 WILD-TYPE
  CLUS_1             2              12
  CLUS_2             0              24
  CLUS_3             3              21
D43V7, multiclass
        clus
vv       DEFA4 MUTATED DEFA4 WILD-TYPE
  CLUS_1             2              12
  CLUS_2             1               8
  CLUS_3             1              18
  CLUS_4             1              19
D43V8, multiclass
        clus
vv       DEFA4 MUTATED DEFA4 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1              13
  CLUS_3             4              37

Clustering(44) Variable = FAM117B MUTATION ANALYSIS
D44V1, multiclass
        clus
vv       FAM117B MUTATED FAM117B WILD-TYPE
  CLUS_1               2                14
  CLUS_2               2                10
  CLUS_3               1                19
  CLUS_4               1                13
D44V2, multiclass
        clus
vv       FAM117B MUTATED FAM117B WILD-TYPE
  CLUS_1               1                17
  CLUS_2               2                19
  CLUS_3               3                20
D44V3, binary
                   cls
clus                 0  1
  FAM117B MUTATED    1  3
  FAM117B WILD-TYPE 19 17
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM117B MUTATED      1    3
  FAM117B WILD-TYPE   19   17
        clus
vv       FAM117B MUTATED FAM117B WILD-TYPE
  CLUS_1               1                19
  CLUS_2               3                17
D44V4, multiclass
D44V5, multiclass
        clus
vv       FAM117B MUTATED FAM117B WILD-TYPE
  CLUS_1               1                21
  CLUS_2               2                21
  CLUS_3               3                14
D44V6, multiclass
        clus
vv       FAM117B MUTATED FAM117B WILD-TYPE
  CLUS_1               2                12
  CLUS_2               3                21
  CLUS_3               1                23
D44V7, multiclass
        clus
vv       FAM117B MUTATED FAM117B WILD-TYPE
  CLUS_1               2                12
  CLUS_2               0                 9
  CLUS_3               2                17
  CLUS_4               2                18
D44V8, multiclass
        clus
vv       FAM117B MUTATED FAM117B WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               1                13
  CLUS_3               5                36

Clustering(45) Variable = GFRAL MUTATION ANALYSIS
D45V1, multiclass
        clus
vv       GFRAL MUTATED GFRAL WILD-TYPE
  CLUS_1             4              12
  CLUS_2             3               9
  CLUS_3             2              18
  CLUS_4             1              13
D45V2, multiclass
        clus
vv       GFRAL MUTATED GFRAL WILD-TYPE
  CLUS_1             3              15
  CLUS_2             2              19
  CLUS_3             5              18
D45V3, binary
                 cls
clus               0  1
  GFRAL MUTATED    1  4
  GFRAL WILD-TYPE 19 16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRAL MUTATED      1    4
  GFRAL WILD-TYPE   19   16
        clus
vv       GFRAL MUTATED GFRAL WILD-TYPE
  CLUS_1             1              19
  CLUS_2             4              16
D45V4, multiclass
D45V5, multiclass
        clus
vv       GFRAL MUTATED GFRAL WILD-TYPE
  CLUS_1             3              19
  CLUS_2             1              22
  CLUS_3             6              11
D45V6, multiclass
        clus
vv       GFRAL MUTATED GFRAL WILD-TYPE
  CLUS_1             5               9
  CLUS_2             1              23
  CLUS_3             4              20
D45V7, multiclass
        clus
vv       GFRAL MUTATED GFRAL WILD-TYPE
  CLUS_1             4              10
  CLUS_2             1               8
  CLUS_3             2              17
  CLUS_4             3              17
D45V8, multiclass
        clus
vv       GFRAL MUTATED GFRAL WILD-TYPE
  CLUS_1             1               6
  CLUS_2             3              11
  CLUS_3             6              35

Clustering(46) Variable = ST8SIA3 MUTATION ANALYSIS
D46V1, multiclass
        clus
vv       ST8SIA3 MUTATED ST8SIA3 WILD-TYPE
  CLUS_1               5                11
  CLUS_2               2                10
  CLUS_3               1                19
  CLUS_4               0                14
D46V2, multiclass
        clus
vv       ST8SIA3 MUTATED ST8SIA3 WILD-TYPE
  CLUS_1               3                15
  CLUS_2               1                20
  CLUS_3               4                19
D46V3, binary
                   cls
clus                 0  1
  ST8SIA3 MUTATED    2  3
  ST8SIA3 WILD-TYPE 18 17
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ST8SIA3 MUTATED      2    3
  ST8SIA3 WILD-TYPE   18   17
        clus
vv       ST8SIA3 MUTATED ST8SIA3 WILD-TYPE
  CLUS_1               2                18
  CLUS_2               3                17
D46V4, multiclass
D46V5, multiclass
        clus
vv       ST8SIA3 MUTATED ST8SIA3 WILD-TYPE
  CLUS_1               3                19
  CLUS_2               3                20
  CLUS_3               2                15
D46V6, multiclass
        clus
vv       ST8SIA3 MUTATED ST8SIA3 WILD-TYPE
  CLUS_1               2                12
  CLUS_2               2                22
  CLUS_3               4                20
D46V7, multiclass
        clus
vv       ST8SIA3 MUTATED ST8SIA3 WILD-TYPE
  CLUS_1               0                14
  CLUS_2               2                 7
  CLUS_3               2                17
  CLUS_4               4                16
D46V8, multiclass
        clus
vv       ST8SIA3 MUTATED ST8SIA3 WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               2                12
  CLUS_3               5                36

Clustering(47) Variable = DSPP MUTATION ANALYSIS
D47V1, multiclass
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            3             13
  CLUS_2            3              9
  CLUS_3            3             17
  CLUS_4            0             14
D47V2, multiclass
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2             19
  CLUS_3            6             17
D47V3, binary
                cls
clus              0  1
  DSPP MUTATED    3  4
  DSPP WILD-TYPE 17 16
[1] "tbl2"
                cls
clus             [,1] [,2]
  DSPP MUTATED      3    4
  DSPP WILD-TYPE   17   16
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            3             17
  CLUS_2            4             16
D47V4, multiclass
D47V5, multiclass
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            2             20
  CLUS_2            4             19
  CLUS_3            3             14
D47V6, multiclass
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            2             12
  CLUS_2            5             19
  CLUS_3            2             22
D47V7, multiclass
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            3             11
  CLUS_2            3              6
  CLUS_3            2             17
  CLUS_4            1             19
D47V8, multiclass
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            1              6
  CLUS_2            1             13
  CLUS_3            7             34

Clustering(48) Variable = OR10K2 MUTATION ANALYSIS
D48V1, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              3                9
  CLUS_3              1               19
  CLUS_4              1               13
D48V2, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              3               15
  CLUS_2              2               19
  CLUS_3              3               20
D48V3, binary
                  cls
clus                0  1
  OR10K2 MUTATED    2  4
  OR10K2 WILD-TYPE 18 16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10K2 MUTATED      2    4
  OR10K2 WILD-TYPE   18   16
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              2               18
  CLUS_2              4               16
D48V4, multiclass
D48V5, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              2               20
  CLUS_2              5               18
  CLUS_3              1               16
D48V6, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              0               14
  CLUS_2              5               19
  CLUS_3              3               21
D48V7, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              0               14
  CLUS_2              1                8
  CLUS_3              3               16
  CLUS_4              4               16
D48V8, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              1               13
  CLUS_3              7               34

Clustering(49) Variable = CLEC17A MUTATION ANALYSIS
D49V1, multiclass
        clus
vv       CLEC17A MUTATED CLEC17A WILD-TYPE
  CLUS_1               3                13
  CLUS_2               1                11
  CLUS_3               1                19
  CLUS_4               0                14
D49V2, multiclass
        clus
vv       CLEC17A MUTATED CLEC17A WILD-TYPE
  CLUS_1               3                15
  CLUS_2               0                21
  CLUS_3               2                21
D49V3, binary
                   cls
clus                 0  1
  CLEC17A MUTATED    1  2
  CLEC17A WILD-TYPE 19 18
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CLEC17A MUTATED      1    2
  CLEC17A WILD-TYPE   19   18
        clus
vv       CLEC17A MUTATED CLEC17A WILD-TYPE
  CLUS_1               1                19
  CLUS_2               2                18
D49V4, multiclass
D49V5, multiclass
        clus
vv       CLEC17A MUTATED CLEC17A WILD-TYPE
  CLUS_1               1                21
  CLUS_2               4                19
  CLUS_3               0                17
D49V6, multiclass
        clus
vv       CLEC17A MUTATED CLEC17A WILD-TYPE
  CLUS_1               0                14
  CLUS_2               3                21
  CLUS_3               2                22
D49V7, multiclass
        clus
vv       CLEC17A MUTATED CLEC17A WILD-TYPE
  CLUS_1               1                13
  CLUS_2               0                 9
  CLUS_3               2                17
  CLUS_4               2                18
D49V8, multiclass
        clus
vv       CLEC17A MUTATED CLEC17A WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               0                14
  CLUS_3               5                36

Clustering(50) Variable = POU6F2 MUTATION ANALYSIS
D50V1, multiclass
        clus
vv       POU6F2 MUTATED POU6F2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              1               11
  CLUS_3              2               18
  CLUS_4              5                9
D50V2, multiclass
        clus
vv       POU6F2 MUTATED POU6F2 WILD-TYPE
  CLUS_1              3               15
  CLUS_2              1               20
  CLUS_3              5               18
D50V3, binary
                  cls
clus                0  1
  POU6F2 MUTATED    3  3
  POU6F2 WILD-TYPE 17 17
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POU6F2 MUTATED      3    3
  POU6F2 WILD-TYPE   17   17
        clus
vv       POU6F2 MUTATED POU6F2 WILD-TYPE
  CLUS_1              3               17
  CLUS_2              3               17
D50V4, multiclass
D50V5, multiclass
        clus
vv       POU6F2 MUTATED POU6F2 WILD-TYPE
  CLUS_1              3               19
  CLUS_2              3               20
  CLUS_3              3               14
D50V6, multiclass
        clus
vv       POU6F2 MUTATED POU6F2 WILD-TYPE
  CLUS_1              2               12
  CLUS_2              4               20
  CLUS_3              3               21
D50V7, multiclass
        clus
vv       POU6F2 MUTATED POU6F2 WILD-TYPE
  CLUS_1              2               12
  CLUS_2              2                7
  CLUS_3              2               17
  CLUS_4              3               17
D50V8, multiclass
        clus
vv       POU6F2 MUTATED POU6F2 WILD-TYPE
  CLUS_1              2                5
  CLUS_2              0               14
  CLUS_3              7               34

Clustering(51) Variable = LRRIQ3 MUTATION ANALYSIS
D51V1, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              4               12
  CLUS_2              1               11
  CLUS_3              4               16
  CLUS_4              1               13
D51V2, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              4               17
  CLUS_3              4               19
D51V3, binary
                  cls
clus                0  1
  LRRIQ3 MUTATED    4  4
  LRRIQ3 WILD-TYPE 16 16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      4    4
  LRRIQ3 WILD-TYPE   16   16
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              4               16
  CLUS_2              4               16
D51V4, multiclass
D51V5, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              1               21
  CLUS_2              7               16
  CLUS_3              2               15
D51V6, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              1               13
  CLUS_2              8               16
  CLUS_3              1               23
D51V7, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              3               11
  CLUS_2              1                8
  CLUS_3              3               16
  CLUS_4              3               17
D51V8, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              2               12
  CLUS_3              7               34

Clustering(52) Variable = ARID2 MUTATION ANALYSIS
D52V1, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             2              10
  CLUS_3             5              15
  CLUS_4             2              12
D52V2, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3              15
  CLUS_2             4              17
  CLUS_3             4              19
D52V3, binary
                 cls
clus               0  1
  ARID2 MUTATED    4  4
  ARID2 WILD-TYPE 16 16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED      4    4
  ARID2 WILD-TYPE   16   16
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             4              16
  CLUS_2             4              16
D52V4, multiclass
D52V5, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3              19
  CLUS_2             6              17
  CLUS_3             2              15
D52V6, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             7              17
  CLUS_3             3              21
D52V7, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2              12
  CLUS_2             3               6
  CLUS_3             3              16
  CLUS_4             3              17
D52V8, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             1              13
  CLUS_3             8              33

Clustering(53) Variable = GAS2 MUTATION ANALYSIS
D53V1, multiclass
        clus
vv       GAS2 MUTATED GAS2 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             10
  CLUS_3            2             18
  CLUS_4            2             12
D53V2, multiclass
        clus
vv       GAS2 MUTATED GAS2 WILD-TYPE
  CLUS_1            3             15
  CLUS_2            2             19
  CLUS_3            2             21
D53V3, binary
                cls
clus              0  1
  GAS2 MUTATED    2  2
  GAS2 WILD-TYPE 18 18
[1] "tbl2"
                cls
clus             [,1] [,2]
  GAS2 MUTATED      2    2
  GAS2 WILD-TYPE   18   18
        clus
vv       GAS2 MUTATED GAS2 WILD-TYPE
  CLUS_1            2             18
  CLUS_2            2             18
D53V4, multiclass
D53V5, multiclass
        clus
vv       GAS2 MUTATED GAS2 WILD-TYPE
  CLUS_1            2             20
  CLUS_2            4             19
  CLUS_3            1             16
D53V6, multiclass
        clus
vv       GAS2 MUTATED GAS2 WILD-TYPE
  CLUS_1            1             13
  CLUS_2            3             21
  CLUS_3            3             21
D53V7, multiclass
        clus
vv       GAS2 MUTATED GAS2 WILD-TYPE
  CLUS_1            1             13
  CLUS_2            2              7
  CLUS_3            2             17
  CLUS_4            2             18
D53V8, multiclass
        clus
vv       GAS2 MUTATED GAS2 WILD-TYPE
  CLUS_1            2              5
  CLUS_2            0             14
  CLUS_3            5             36

Clustering(54) Variable = SIRPB1 MUTATION ANALYSIS
D54V1, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              0               12
  CLUS_3              4               16
  CLUS_4              2               12
D54V2, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              3               18
  CLUS_3              2               21
D54V3, binary
                  cls
clus                0  1
  SIRPB1 MUTATED    2  2
  SIRPB1 WILD-TYPE 18 18
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SIRPB1 MUTATED      2    2
  SIRPB1 WILD-TYPE   18   18
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              2               18
  CLUS_2              2               18
D54V4, multiclass
D54V5, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              1               21
  CLUS_2              3               20
  CLUS_3              2               15
D54V6, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              1               13
  CLUS_2              3               21
  CLUS_3              2               22
D54V7, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              0               14
  CLUS_2              0                9
  CLUS_3              3               16
  CLUS_4              3               17
D54V8, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              3               11
  CLUS_3              3               38

Clustering(55) Variable = ACTC1 MUTATION ANALYSIS
D55V1, multiclass
        clus
vv       ACTC1 MUTATED ACTC1 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              11
  CLUS_3             1              19
  CLUS_4             2              12
D55V2, multiclass
        clus
vv       ACTC1 MUTATED ACTC1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             2              19
  CLUS_3             4              19
D55V3, binary
                 cls
clus               0  1
  ACTC1 MUTATED    1  3
  ACTC1 WILD-TYPE 19 17
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACTC1 MUTATED      1    3
  ACTC1 WILD-TYPE   19   17
        clus
vv       ACTC1 MUTATED ACTC1 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             3              17
D55V4, multiclass
D55V5, multiclass
        clus
vv       ACTC1 MUTATED ACTC1 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             4              19
  CLUS_3             1              16
D55V6, multiclass
        clus
vv       ACTC1 MUTATED ACTC1 WILD-TYPE
  CLUS_1             2              12
  CLUS_2             3              21
  CLUS_3             1              23
D55V7, multiclass
        clus
vv       ACTC1 MUTATED ACTC1 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             1               8
  CLUS_3             2              17
  CLUS_4             3              17
D55V8, multiclass
        clus
vv       ACTC1 MUTATED ACTC1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             0              14
  CLUS_3             5              36

Clustering(56) Variable = PRB2 MUTATION ANALYSIS
D56V1, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            0             12
  CLUS_3            5             15
  CLUS_4            2             12
D56V2, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            3             15
  CLUS_2            3             18
  CLUS_3            3             20
D56V3, binary
                cls
clus              0  1
  PRB2 MUTATED    3  3
  PRB2 WILD-TYPE 17 17
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB2 MUTATED      3    3
  PRB2 WILD-TYPE   17   17
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            3             17
  CLUS_2            3             17
D56V4, multiclass
D56V5, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2             20
  CLUS_2            5             18
  CLUS_3            2             15
D56V6, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2             12
  CLUS_2            5             19
  CLUS_3            2             22
D56V7, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2             12
  CLUS_2            2              7
  CLUS_3            3             16
  CLUS_4            2             18
D56V8, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            1              6
  CLUS_2            1             13
  CLUS_3            7             34

Clustering(57) Variable = C15ORF23 MUTATION ANALYSIS
D57V1, multiclass
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                0                 12
  CLUS_3                3                 17
  CLUS_4                1                 13
D57V2, multiclass
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                3                 18
  CLUS_3                1                 22
D57V3, binary
                    cls
clus                  0  1
  C15ORF23 MUTATED    2  1
  C15ORF23 WILD-TYPE 18 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C15ORF23 MUTATED      2    1
  C15ORF23 WILD-TYPE   18   19
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                1                 19
D57V4, multiclass
D57V5, multiclass
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                1                 21
  CLUS_2                2                 21
  CLUS_3                1                 16
D57V6, multiclass
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                1                 23
  CLUS_3                2                 22
D57V7, multiclass
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                0                 14
  CLUS_2                1                  8
  CLUS_3                3                 16
  CLUS_4                0                 20
D57V8, multiclass
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                0                 14
  CLUS_3                3                 38

Clustering(58) Variable = FASLG MUTATION ANALYSIS
D58V1, multiclass
        clus
vv       FASLG MUTATED FASLG WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3               9
  CLUS_3             2              18
  CLUS_4             0              14
D58V2, multiclass
        clus
vv       FASLG MUTATED FASLG WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1              20
  CLUS_3             3              20
D58V3, binary
                 cls
clus               0  1
  FASLG MUTATED    3  2
  FASLG WILD-TYPE 17 18
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FASLG MUTATED      3    2
  FASLG WILD-TYPE   17   18
        clus
vv       FASLG MUTATED FASLG WILD-TYPE
  CLUS_1             3              17
  CLUS_2             2              18
D58V4, multiclass
D58V5, multiclass
        clus
vv       FASLG MUTATED FASLG WILD-TYPE
  CLUS_1             2              20
  CLUS_2             2              21
  CLUS_3             1              16
D58V6, multiclass
        clus
vv       FASLG MUTATED FASLG WILD-TYPE
  CLUS_1             1              13
  CLUS_2             2              22
  CLUS_3             2              22
D58V7, multiclass
        clus
vv       FASLG MUTATED FASLG WILD-TYPE
  CLUS_1             3              11
  CLUS_2             1               8
  CLUS_3             1              18
  CLUS_4             0              20
D58V8, multiclass
        clus
vv       FASLG MUTATED FASLG WILD-TYPE
  CLUS_1             0               7
  CLUS_2             3              11
  CLUS_3             2              39

Clustering(59) Variable = PAK7 MUTATION ANALYSIS
D59V1, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            4              8
  CLUS_3            4             16
  CLUS_4            2             12
D59V2, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            2             16
  CLUS_2            4             17
  CLUS_3            6             17
D59V3, binary
                cls
clus              0  1
  PAK7 MUTATED    2  5
  PAK7 WILD-TYPE 18 15
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAK7 MUTATED      2    5
  PAK7 WILD-TYPE   18   15
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            2             18
  CLUS_2            5             15
D59V4, multiclass
D59V5, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            4             18
  CLUS_2            6             17
  CLUS_3            2             15
D59V6, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            1             13
  CLUS_2            7             17
  CLUS_3            4             20
D59V7, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            1             13
  CLUS_2            5              4
  CLUS_3            1             18
  CLUS_4            5             15
D59V8, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            3              4
  CLUS_2            2             12
  CLUS_3            7             34

Clustering(60) Variable = SIGLEC14 MUTATION ANALYSIS
D60V1, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                1                 11
  CLUS_3                0                 20
  CLUS_4                2                 12
D60V2, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                1                 20
  CLUS_3                4                 19
D60V3, binary
                    cls
clus                  0  1
  SIGLEC14 MUTATED    0  1
  SIGLEC14 WILD-TYPE 20 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SIGLEC14 MUTATED      0    1
  SIGLEC14 WILD-TYPE   20   19
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                1                 19
D60V4, multiclass
[1] "Remove cluster labels:" "SIGLEC14 MUTATED"      
clus
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 1                 39 
        TCGA-D3-A1Q1         TCGA-D3-A1Q8         TCGA-D3-A1QB 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A2J8         TCGA-D3-A2JO         TCGA-DA-A1HV 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A184         TCGA-EE-A185 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A20C         TCGA-EE-A29G         TCGA-EE-A29L 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29R         TCGA-EE-A29S         TCGA-EE-A2A2 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GL         TCGA-EE-A2GP         TCGA-EE-A2GU 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MC         TCGA-EE-A2MD         TCGA-EE-A2ML 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A3AC 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A195         TCGA-ER-A199         TCGA-ER-A19D 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A19N         TCGA-ER-A2NC         TCGA-ER-A2NE 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A2NH         TCGA-FS-A1YW         TCGA-FS-A1Z0 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1Z3         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZT         TCGA-GN-A267         TCGA-GN-A268 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
D60V5, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                3                 19
  CLUS_2                1                 22
  CLUS_3                2                 15
D60V6, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                2                 22
  CLUS_3                2                 22
D60V7, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                0                 14
  CLUS_2                1                  8
  CLUS_3                1                 18
  CLUS_4                4                 16
D60V8, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                0                 14
  CLUS_3                5                 36

Clustering(61) Variable = TPTE2 MUTATION ANALYSIS
D61V1, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             3               9
  CLUS_3             2              18
  CLUS_4             1              13
D61V2, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             2              19
  CLUS_3             4              19
D61V3, binary
                 cls
clus               0  1
  TPTE2 MUTATED    2  4
  TPTE2 WILD-TYPE 18 16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TPTE2 MUTATED      2    4
  TPTE2 WILD-TYPE   18   16
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             4              16
D61V4, multiclass
D61V5, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              20
  CLUS_2             2              21
  CLUS_3             4              13
D61V6, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              11
  CLUS_2             3              21
  CLUS_3             2              22
D61V7, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              11
  CLUS_2             2               7
  CLUS_3             1              18
  CLUS_4             2              18
D61V8, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2              12
  CLUS_3             6              35

Clustering(62) Variable = APBB1IP MUTATION ANALYSIS
D62V1, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               0                16
  CLUS_2               1                11
  CLUS_3               4                16
  CLUS_4               1                13
D62V2, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               2                16
  CLUS_2               2                19
  CLUS_3               2                21
D62V3, binary
                   cls
clus                 0  1
  APBB1IP MUTATED    0  2
  APBB1IP WILD-TYPE 20 18
[1] "tbl2"
                   cls
clus                [,1] [,2]
  APBB1IP MUTATED      0    2
  APBB1IP WILD-TYPE   20   18
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               0                20
  CLUS_2               2                18
D62V4, multiclass
[1] "Remove cluster labels:" "APBB1IP MUTATED"       
clus
  APBB1IP MUTATED APBB1IP WILD-TYPE 
                2                38 
       TCGA-D3-A1Q1        TCGA-D3-A1Q8        TCGA-D3-A1QB        TCGA-D3-A2JO 
"APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" 
       TCGA-DA-A1HV        TCGA-EE-A184        TCGA-EE-A185        TCGA-EE-A20C 
"APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" 
       TCGA-EE-A29G        TCGA-EE-A29L        TCGA-EE-A29R        TCGA-EE-A29S 
"APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" 
       TCGA-EE-A29V        TCGA-EE-A2A2        TCGA-EE-A2GL        TCGA-EE-A2GP 
"APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ML 
"APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" 
       TCGA-EE-A2MM        TCGA-EE-A2MN        TCGA-EE-A3AC        TCGA-ER-A195 
"APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" 
       TCGA-ER-A199        TCGA-ER-A19D        TCGA-ER-A19N        TCGA-ER-A2NC 
"APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" 
       TCGA-ER-A2NE        TCGA-ER-A2NH        TCGA-FS-A1YW        TCGA-FS-A1Z0 
"APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" 
       TCGA-FS-A1Z3        TCGA-FS-A1ZP        TCGA-FS-A1ZQ        TCGA-FS-A1ZT 
"APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268 
"APBB1IP WILD-TYPE" "APBB1IP WILD-TYPE" 
D62V5, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               2                20
  CLUS_2               2                21
  CLUS_3               2                15
D62V6, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               1                13
  CLUS_2               2                22
  CLUS_3               3                21
D62V7, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               2                12
  CLUS_2               0                 9
  CLUS_3               3                16
  CLUS_4               1                19
D62V8, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               3                11
  CLUS_3               3                38

Clustering(63) Variable = ANGPT1 MUTATION ANALYSIS
D63V1, multiclass
        clus
vv       ANGPT1 MUTATED ANGPT1 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              2               10
  CLUS_3              2               18
  CLUS_4              2               12
D63V2, multiclass
        clus
vv       ANGPT1 MUTATED ANGPT1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              3               18
  CLUS_3              4               19
D63V3, binary
                  cls
clus                0  1
  ANGPT1 MUTATED    1  3
  ANGPT1 WILD-TYPE 19 17
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANGPT1 MUTATED      1    3
  ANGPT1 WILD-TYPE   19   17
        clus
vv       ANGPT1 MUTATED ANGPT1 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              3               17
D63V4, multiclass
D63V5, multiclass
        clus
vv       ANGPT1 MUTATED ANGPT1 WILD-TYPE
  CLUS_1              1               21
  CLUS_2              5               18
  CLUS_3              2               15
D63V6, multiclass
        clus
vv       ANGPT1 MUTATED ANGPT1 WILD-TYPE
  CLUS_1              0               14
  CLUS_2              6               18
  CLUS_3              2               22
D63V7, multiclass
        clus
vv       ANGPT1 MUTATED ANGPT1 WILD-TYPE
  CLUS_1              0               14
  CLUS_2              2                7
  CLUS_3              4               15
  CLUS_4              2               18
D63V8, multiclass
        clus
vv       ANGPT1 MUTATED ANGPT1 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              2               12
  CLUS_3              5               36

Clustering(64) Variable = ARL16 MUTATION ANALYSIS
D64V1, multiclass
        clus
vv       ARL16 MUTATED ARL16 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              11
  CLUS_3             0              20
  CLUS_4             2              12
D64V2, multiclass
        clus
vv       ARL16 MUTATED ARL16 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1              20
  CLUS_3             1              22
D64V3, binary
                 cls
clus               0  1
  ARL16 MUTATED    2  1
  ARL16 WILD-TYPE 18 19
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARL16 MUTATED      2    1
  ARL16 WILD-TYPE   18   19
        clus
vv       ARL16 MUTATED ARL16 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             1              19
D64V4, multiclass
D64V5, multiclass
        clus
vv       ARL16 MUTATED ARL16 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             1              22
  CLUS_3             1              16
D64V6, multiclass
        clus
vv       ARL16 MUTATED ARL16 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             1              23
  CLUS_3             2              22
D64V7, multiclass
        clus
vv       ARL16 MUTATED ARL16 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             1               8
  CLUS_3             2              17
  CLUS_4             0              20
D64V8, multiclass
        clus
vv       ARL16 MUTATED ARL16 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             1              13
  CLUS_3             1              40

Clustering(65) Variable = ARMC4 MUTATION ANALYSIS
D65V1, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             3              13
  CLUS_2             2              10
  CLUS_3             6              14
  CLUS_4             4              10
D65V2, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             4              14
  CLUS_2             6              15
  CLUS_3             5              18
D65V3, binary
                 cls
clus               0  1
  ARMC4 MUTATED    4  5
  ARMC4 WILD-TYPE 16 15
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARMC4 MUTATED      4    5
  ARMC4 WILD-TYPE   16   15
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             4              16
  CLUS_2             5              15
D65V4, multiclass
D65V5, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             3              19
  CLUS_2             8              15
  CLUS_3             4              13
D65V6, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             2              12
  CLUS_2             9              15
  CLUS_3             4              20
D65V7, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             3               6
  CLUS_3             5              14
  CLUS_4             6              14
D65V8, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             2              12
  CLUS_3            11              30

Clustering(66) Variable = CD2 MUTATION ANALYSIS
D66V1, multiclass
        clus
vv       CD2 MUTATED CD2 WILD-TYPE
  CLUS_1           1            15
  CLUS_2           1            11
  CLUS_3           1            19
  CLUS_4           0            14
D66V2, multiclass
        clus
vv       CD2 MUTATED CD2 WILD-TYPE
  CLUS_1           2            16
  CLUS_2           0            21
  CLUS_3           1            22
D66V3, binary
               cls
clus             0  1
  CD2 MUTATED    0  1
  CD2 WILD-TYPE 20 19
[1] "tbl2"
               cls
clus            [,1] [,2]
  CD2 MUTATED      0    1
  CD2 WILD-TYPE   20   19
        clus
vv       CD2 MUTATED CD2 WILD-TYPE
  CLUS_1           0            20
  CLUS_2           1            19
D66V4, multiclass
[1] "Remove cluster labels:" "CD2 MUTATED"           
clus
  CD2 MUTATED CD2 WILD-TYPE 
            1            39 
   TCGA-D3-A1Q1    TCGA-D3-A1Q8    TCGA-D3-A1QB    TCGA-D3-A2J8    TCGA-D3-A2JO 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1HV    TCGA-EE-A17X    TCGA-EE-A184    TCGA-EE-A185    TCGA-EE-A20C 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A29G    TCGA-EE-A29L    TCGA-EE-A29R    TCGA-EE-A29S    TCGA-EE-A29V 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2GL    TCGA-EE-A2GU    TCGA-EE-A2MC    TCGA-EE-A2MD 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN    TCGA-EE-A3AC    TCGA-ER-A195 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-ER-A199    TCGA-ER-A19D    TCGA-ER-A19N    TCGA-ER-A2NC    TCGA-ER-A2NE 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-ER-A2NH    TCGA-FS-A1YW    TCGA-FS-A1Z0    TCGA-FS-A1Z3    TCGA-FS-A1ZP 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZT    TCGA-GN-A267    TCGA-GN-A268 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
D66V5, multiclass
        clus
vv       CD2 MUTATED CD2 WILD-TYPE
  CLUS_1           2            20
  CLUS_2           1            22
  CLUS_3           0            17
D66V6, multiclass
        clus
vv       CD2 MUTATED CD2 WILD-TYPE
  CLUS_1           0            14
  CLUS_2           1            23
  CLUS_3           2            22
D66V7, multiclass
        clus
vv       CD2 MUTATED CD2 WILD-TYPE
  CLUS_1           2            12
  CLUS_2           0             9
  CLUS_3           1            18
  CLUS_4           0            20
D66V8, multiclass
        clus
vv       CD2 MUTATED CD2 WILD-TYPE
  CLUS_1           0             7
  CLUS_2           1            13
  CLUS_3           2            39

Clustering(67) Variable = FRG2B MUTATION ANALYSIS
D67V1, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             1              15
  CLUS_2             0              12
  CLUS_3             4              16
  CLUS_4             0              14
D67V2, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             0              18
  CLUS_2             3              18
  CLUS_3             2              21
D67V3, binary
                 cls
clus               0  1
  FRG2B MUTATED    3  2
  FRG2B WILD-TYPE 17 18
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FRG2B MUTATED      3    2
  FRG2B WILD-TYPE   17   18
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             3              17
  CLUS_2             2              18
D67V4, multiclass
D67V5, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             1              21
  CLUS_2             4              19
  CLUS_3             0              17
D67V6, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             0              14
  CLUS_2             4              20
  CLUS_3             1              23
D67V7, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             1              13
  CLUS_2             1               8
  CLUS_3             2              17
  CLUS_4             1              19
D67V8, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             0               7
  CLUS_2             3              11
  CLUS_3             2              39

Clustering(68) Variable = KRTAP12-1 MUTATION ANALYSIS
D68V1, multiclass
        clus
vv       KRTAP12-1 MUTATED KRTAP12-1 WILD-TYPE
  CLUS_1                 0                  16
  CLUS_2                 1                  11
  CLUS_3                 1                  19
  CLUS_4                 1                  13
D68V2, multiclass
        clus
vv       KRTAP12-1 MUTATED KRTAP12-1 WILD-TYPE
  CLUS_1                 0                  18
  CLUS_2                 2                  19
  CLUS_3                 1                  22
D68V3, binary
                     cls
clus                   0  1
  KRTAP12-1 MUTATED    0  2
  KRTAP12-1 WILD-TYPE 20 18
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP12-1 MUTATED      0    2
  KRTAP12-1 WILD-TYPE   20   18
        clus
vv       KRTAP12-1 MUTATED KRTAP12-1 WILD-TYPE
  CLUS_1                 0                  20
  CLUS_2                 2                  18
D68V4, multiclass
[1] "Remove cluster labels:" "KRTAP12-1 MUTATED"     
clus
  KRTAP12-1 MUTATED KRTAP12-1 WILD-TYPE 
                  2                  38 
         TCGA-D3-A1Q1          TCGA-D3-A1Q8          TCGA-D3-A2J8 
"KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" 
         TCGA-D3-A2JO          TCGA-DA-A1HV          TCGA-EE-A17X 
"KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" 
         TCGA-EE-A184          TCGA-EE-A185          TCGA-EE-A20C 
"KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" 
         TCGA-EE-A29G          TCGA-EE-A29L          TCGA-EE-A29R 
"KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" 
         TCGA-EE-A29S          TCGA-EE-A29V          TCGA-EE-A2A2 
"KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" 
         TCGA-EE-A2GL          TCGA-EE-A2GP          TCGA-EE-A2GU 
"KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" 
         TCGA-EE-A2MC          TCGA-EE-A2ML          TCGA-EE-A2MM 
"KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" 
         TCGA-EE-A2MN          TCGA-EE-A3AC          TCGA-ER-A195 
"KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" 
         TCGA-ER-A199          TCGA-ER-A19D          TCGA-ER-A19N 
"KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" 
         TCGA-ER-A2NC          TCGA-ER-A2NE          TCGA-ER-A2NH 
"KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" 
         TCGA-FS-A1YW          TCGA-FS-A1Z0          TCGA-FS-A1Z3 
"KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" 
         TCGA-FS-A1ZP          TCGA-FS-A1ZQ          TCGA-FS-A1ZT 
"KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" 
         TCGA-GN-A267          TCGA-GN-A268 
"KRTAP12-1 WILD-TYPE" "KRTAP12-1 WILD-TYPE" 
D68V5, multiclass
        clus
vv       KRTAP12-1 MUTATED KRTAP12-1 WILD-TYPE
  CLUS_1                 0                  22
  CLUS_2                 2                  21
  CLUS_3                 1                  16
D68V6, multiclass
        clus
vv       KRTAP12-1 MUTATED KRTAP12-1 WILD-TYPE
  CLUS_1                 0                  14
  CLUS_2                 3                  21
  CLUS_3                 0                  24
D68V7, multiclass
        clus
vv       KRTAP12-1 MUTATED KRTAP12-1 WILD-TYPE
  CLUS_1                 1                  13
  CLUS_2                 1                   8
  CLUS_3                 0                  19
  CLUS_4                 1                  19
D68V8, multiclass
        clus
vv       KRTAP12-1 MUTATED KRTAP12-1 WILD-TYPE
  CLUS_1                 0                   7
  CLUS_2                 1                  13
  CLUS_3                 2                  39

Clustering(69) Variable = CYP4X1 MUTATION ANALYSIS
D69V1, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              1               11
  CLUS_3              4               16
  CLUS_4              0               14
D69V2, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              4               17
  CLUS_3              2               21
D69V3, binary
                  cls
clus                0  1
  CYP4X1 MUTATED    2  1
  CYP4X1 WILD-TYPE 18 19
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP4X1 MUTATED      2    1
  CYP4X1 WILD-TYPE   18   19
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              2               18
  CLUS_2              1               19
D69V4, multiclass
D69V5, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              3               19
  CLUS_2              3               20
  CLUS_3              1               16
D69V6, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              1               13
  CLUS_2              2               22
  CLUS_3              4               20
D69V7, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              1               13
  CLUS_2              2                7
  CLUS_3              2               17
  CLUS_4              2               18
D69V8, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              2               12
  CLUS_3              4               37

Clustering(70) Variable = DSG1 MUTATION ANALYSIS
D70V1, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            4             12
  CLUS_2            2             10
  CLUS_3            5             15
  CLUS_4            3             11
D70V2, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            3             15
  CLUS_2            5             16
  CLUS_3            6             17
D70V3, binary
                cls
clus              0  1
  DSG1 MUTATED    3  5
  DSG1 WILD-TYPE 17 15
[1] "tbl2"
                cls
clus             [,1] [,2]
  DSG1 MUTATED      3    5
  DSG1 WILD-TYPE   17   15
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            3             17
  CLUS_2            5             15
D70V4, multiclass
D70V5, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            5             17
  CLUS_2            5             18
  CLUS_3            4             13
D70V6, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            3             11
  CLUS_2            6             18
  CLUS_3            5             19
D70V7, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            2             12
  CLUS_2            3              6
  CLUS_3            3             16
  CLUS_4            6             14
D70V8, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            2              5
  CLUS_2            3             11
  CLUS_3            9             32

Clustering(71) Variable = ADAM7 MUTATION ANALYSIS
D71V1, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             5               7
  CLUS_3             4              16
  CLUS_4             2              12
D71V2, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             6              15
  CLUS_3             6              17
D71V3, binary
                 cls
clus               0  1
  ADAM7 MUTATED    1  5
  ADAM7 WILD-TYPE 19 15
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADAM7 MUTATED      1    5
  ADAM7 WILD-TYPE   19   15
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             5              15
D71V4, multiclass
D71V5, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             3              19
  CLUS_2             9              14
  CLUS_3             1              16
D71V6, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             8              16
  CLUS_3             4              20
D71V7, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             3               6
  CLUS_3             4              15
  CLUS_4             5              15
D71V8, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             4              10
  CLUS_3             7              34

Clustering(72) Variable = KCNQ5 MUTATION ANALYSIS
D72V1, multiclass
        clus
vv       KCNQ5 MUTATED KCNQ5 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             2              10
  CLUS_3             4              16
  CLUS_4             2              12
D72V2, multiclass
        clus
vv       KCNQ5 MUTATED KCNQ5 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             3              18
  CLUS_3             7              16
D72V3, binary
                 cls
clus               0  1
  KCNQ5 MUTATED    3  2
  KCNQ5 WILD-TYPE 17 18
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNQ5 MUTATED      3    2
  KCNQ5 WILD-TYPE   17   18
        clus
vv       KCNQ5 MUTATED KCNQ5 WILD-TYPE
  CLUS_1             3              17
  CLUS_2             2              18
D72V4, multiclass
D72V5, multiclass
        clus
vv       KCNQ5 MUTATED KCNQ5 WILD-TYPE
  CLUS_1             2              20
  CLUS_2             6              17
  CLUS_3             2              15
D72V6, multiclass
        clus
vv       KCNQ5 MUTATED KCNQ5 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             7              17
  CLUS_3             2              22
D72V7, multiclass
        clus
vv       KCNQ5 MUTATED KCNQ5 WILD-TYPE
  CLUS_1             2              12
  CLUS_2             3               6
  CLUS_3             2              17
  CLUS_4             3              17
D72V8, multiclass
        clus
vv       KCNQ5 MUTATED KCNQ5 WILD-TYPE
  CLUS_1             3               4
  CLUS_2             0              14
  CLUS_3             7              34

Clustering(73) Variable = POF1B MUTATION ANALYSIS
D73V1, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             3              13
  CLUS_2             1              11
  CLUS_3             4              16
  CLUS_4             2              12
D73V2, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             2              16
  CLUS_2             4              17
  CLUS_3             4              19
D73V3, binary
                 cls
clus               0  1
  POF1B MUTATED    3  2
  POF1B WILD-TYPE 17 18
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POF1B MUTATED      3    2
  POF1B WILD-TYPE   17   18
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             3              17
  CLUS_2             2              18
D73V4, multiclass
D73V5, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             3              19
  CLUS_2             4              19
  CLUS_3             3              14
D73V6, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             1              13
  CLUS_2             6              18
  CLUS_3             3              21
D73V7, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             1              13
  CLUS_2             2               7
  CLUS_3             4              15
  CLUS_4             3              17
D73V8, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             2               5
  CLUS_2             1              13
  CLUS_3             7              34

Clustering(74) Variable = TCEB3C MUTATION ANALYSIS
D74V1, multiclass
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              3               13
  CLUS_2              1               11
  CLUS_3              2               18
  CLUS_4              1               13
D74V2, multiclass
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1               20
  CLUS_3              5               18
D74V3, binary
                  cls
clus                0  1
  TCEB3C MUTATED    2  3
  TCEB3C WILD-TYPE 18 17
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCEB3C MUTATED      2    3
  TCEB3C WILD-TYPE   18   17
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              2               18
  CLUS_2              3               17
D74V4, multiclass
D74V5, multiclass
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              2               20
  CLUS_2              3               20
  CLUS_3              2               15
D74V6, multiclass
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              2               12
  CLUS_2              3               21
  CLUS_3              2               22
D74V7, multiclass
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              0               14
  CLUS_2              4                5
  CLUS_3              2               17
  CLUS_4              1               19
D74V8, multiclass
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              3                4
  CLUS_2              2               12
  CLUS_3              2               39

Clustering(75) Variable = F2RL1 MUTATION ANALYSIS
D75V1, multiclass
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              11
  CLUS_3             3              17
  CLUS_4             0              14
D75V2, multiclass
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             2              19
  CLUS_3             2              21
D75V3, binary
                 cls
clus               0  1
  F2RL1 MUTATED    2  1
  F2RL1 WILD-TYPE 18 19
[1] "tbl2"
                 cls
clus              [,1] [,2]
  F2RL1 MUTATED      2    1
  F2RL1 WILD-TYPE   18   19
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             1              19
D75V4, multiclass
D75V5, multiclass
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             3              19
  CLUS_2             2              21
  CLUS_3             1              16
D75V6, multiclass
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             2              22
  CLUS_3             3              21
D75V7, multiclass
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             4              10
  CLUS_2             0               9
  CLUS_3             2              17
  CLUS_4             0              20
D75V8, multiclass
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2              12
  CLUS_3             4              37

Clustering(76) Variable = SNCAIP MUTATION ANALYSIS
D76V1, multiclass
        clus
vv       SNCAIP MUTATED SNCAIP WILD-TYPE
  CLUS_1              0               16
  CLUS_2              4                8
  CLUS_3              4               16
  CLUS_4              4               10
D76V2, multiclass
        clus
vv       SNCAIP MUTATED SNCAIP WILD-TYPE
  CLUS_1              4               14
  CLUS_2              5               16
  CLUS_3              3               20
D76V3, binary
                  cls
clus                0  1
  SNCAIP MUTATED    3  2
  SNCAIP WILD-TYPE 17 18
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SNCAIP MUTATED      3    2
  SNCAIP WILD-TYPE   17   18
        clus
vv       SNCAIP MUTATED SNCAIP WILD-TYPE
  CLUS_1              3               17
  CLUS_2              2               18
D76V4, multiclass
D76V5, multiclass
        clus
vv       SNCAIP MUTATED SNCAIP WILD-TYPE
  CLUS_1              5               17
  CLUS_2              6               17
  CLUS_3              1               16
D76V6, multiclass
        clus
vv       SNCAIP MUTATED SNCAIP WILD-TYPE
  CLUS_1              0               14
  CLUS_2              5               19
  CLUS_3              7               17
D76V7, multiclass
        clus
vv       SNCAIP MUTATED SNCAIP WILD-TYPE
  CLUS_1              0               14
  CLUS_2              4                5
  CLUS_3              1               18
  CLUS_4              7               13
D76V8, multiclass
        clus
vv       SNCAIP MUTATED SNCAIP WILD-TYPE
  CLUS_1              2                5
  CLUS_2              2               12
  CLUS_3              8               33

Clustering(77) Variable = LOC649330 MUTATION ANALYSIS
D77V1, multiclass
        clus
vv       LOC649330 MUTATED LOC649330 WILD-TYPE
  CLUS_1                 4                  12
  CLUS_2                 0                  12
  CLUS_3                 4                  16
  CLUS_4                 0                  14
D77V2, multiclass
        clus
vv       LOC649330 MUTATED LOC649330 WILD-TYPE
  CLUS_1                 2                  16
  CLUS_2                 4                  17
  CLUS_3                 2                  21
D77V3, binary
                     cls
clus                   0  1
  LOC649330 MUTATED    3  4
  LOC649330 WILD-TYPE 17 16
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  LOC649330 MUTATED      3    4
  LOC649330 WILD-TYPE   17   16
        clus
vv       LOC649330 MUTATED LOC649330 WILD-TYPE
  CLUS_1                 3                  17
  CLUS_2                 4                  16
D77V4, multiclass
D77V5, multiclass
        clus
vv       LOC649330 MUTATED LOC649330 WILD-TYPE
  CLUS_1                 1                  21
  CLUS_2                 5                  18
  CLUS_3                 2                  15
D77V6, multiclass
        clus
vv       LOC649330 MUTATED LOC649330 WILD-TYPE
  CLUS_1                 2                  12
  CLUS_2                 4                  20
  CLUS_3                 2                  22
D77V7, multiclass
        clus
vv       LOC649330 MUTATED LOC649330 WILD-TYPE
  CLUS_1                 1                  13
  CLUS_2                 1                   8
  CLUS_3                 4                  15
  CLUS_4                 2                  18
D77V8, multiclass
        clus
vv       LOC649330 MUTATED LOC649330 WILD-TYPE
  CLUS_1                 1                   6
  CLUS_2                 2                  12
  CLUS_3                 5                  36

Clustering(78) Variable = UGT2A3 MUTATION ANALYSIS
D78V1, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3                9
  CLUS_3              3               17
  CLUS_4              2               12
D78V2, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              4               17
  CLUS_3              3               20
D78V3, binary
                  cls
clus                0  1
  UGT2A3 MUTATED    3  4
  UGT2A3 WILD-TYPE 17 16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UGT2A3 MUTATED      3    4
  UGT2A3 WILD-TYPE   17   16
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              3               17
  CLUS_2              4               16
D78V4, multiclass
D78V5, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              1               21
  CLUS_2              4               19
  CLUS_3              3               14
D78V6, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              1               13
  CLUS_2              6               18
  CLUS_3              1               23
D78V7, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              1               13
  CLUS_2              3                6
  CLUS_3              4               15
  CLUS_4              0               20
D78V8, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              2                5
  CLUS_2              3               11
  CLUS_3              3               38

Clustering(79) Variable = C3ORF71 MUTATION ANALYSIS
D79V1, multiclass
        clus
vv       C3ORF71 MUTATED C3ORF71 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               1                11
  CLUS_3               2                18
  CLUS_4               0                14
D79V2, multiclass
        clus
vv       C3ORF71 MUTATED C3ORF71 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               2                19
  CLUS_3               0                23
D79V3, binary
                   cls
clus                 0  1
  C3ORF71 MUTATED    1  2
  C3ORF71 WILD-TYPE 19 18
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C3ORF71 MUTATED      1    2
  C3ORF71 WILD-TYPE   19   18
        clus
vv       C3ORF71 MUTATED C3ORF71 WILD-TYPE
  CLUS_1               1                19
  CLUS_2               2                18
D79V4, multiclass
D79V5, multiclass
        clus
vv       C3ORF71 MUTATED C3ORF71 WILD-TYPE
  CLUS_1               1                21
  CLUS_2               2                21
  CLUS_3               0                17
D79V6, multiclass
        clus
vv       C3ORF71 MUTATED C3ORF71 WILD-TYPE
  CLUS_1               0                14
  CLUS_2               2                22
  CLUS_3               1                23
D79V7, multiclass
        clus
vv       C3ORF71 MUTATED C3ORF71 WILD-TYPE
  CLUS_1               0                14
  CLUS_2               0                 9
  CLUS_3               2                17
  CLUS_4               1                19
D79V8, multiclass
        clus
vv       C3ORF71 MUTATED C3ORF71 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               2                12
  CLUS_3               1                40

Clustering(80) Variable = NDUFA13 MUTATION ANALYSIS
D80V1, multiclass
        clus
vv       NDUFA13 MUTATED NDUFA13 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               0                12
  CLUS_3               1                19
  CLUS_4               3                11
D80V2, multiclass
        clus
vv       NDUFA13 MUTATED NDUFA13 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                21
  CLUS_3               3                20
D80V3, binary
                   cls
clus                 0  1
  NDUFA13 MUTATED    1  1
  NDUFA13 WILD-TYPE 19 19
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NDUFA13 MUTATED      1    1
  NDUFA13 WILD-TYPE   19   19
        clus
vv       NDUFA13 MUTATED NDUFA13 WILD-TYPE
  CLUS_1               1                19
  CLUS_2               1                19
D80V4, multiclass
[1] "Remove cluster labels:" "NDUFA13 MUTATED"       
clus
  NDUFA13 MUTATED NDUFA13 WILD-TYPE 
                2                38 
       TCGA-D3-A1Q1        TCGA-D3-A1Q8        TCGA-D3-A1QB        TCGA-D3-A2J8 
"NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" 
       TCGA-D3-A2JO        TCGA-DA-A1HV        TCGA-EE-A17X        TCGA-EE-A184 
"NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20C        TCGA-EE-A29G        TCGA-EE-A29R 
"NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" 
       TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A2GL        TCGA-EE-A2GP 
"NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ML 
"NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" 
       TCGA-EE-A2MM        TCGA-EE-A2MN        TCGA-EE-A3AC        TCGA-ER-A195 
"NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" 
       TCGA-ER-A199        TCGA-ER-A19D        TCGA-ER-A19N        TCGA-ER-A2NC 
"NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" 
       TCGA-ER-A2NE        TCGA-ER-A2NH        TCGA-FS-A1YW        TCGA-FS-A1Z0 
"NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" 
       TCGA-FS-A1Z3        TCGA-FS-A1ZP        TCGA-FS-A1ZQ        TCGA-FS-A1ZT 
"NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268 
"NDUFA13 WILD-TYPE" "NDUFA13 WILD-TYPE" 
D80V5, multiclass
        clus
vv       NDUFA13 MUTATED NDUFA13 WILD-TYPE
  CLUS_1               1                21
  CLUS_2               2                21
  CLUS_3               1                16
D80V6, multiclass
        clus
vv       NDUFA13 MUTATED NDUFA13 WILD-TYPE
  CLUS_1               1                13
  CLUS_2               2                22
  CLUS_3               1                23
D80V7, multiclass
        clus
vv       NDUFA13 MUTATED NDUFA13 WILD-TYPE
  CLUS_1               0                14
  CLUS_2               1                 8
  CLUS_3               0                19
  CLUS_4               3                17
D80V8, multiclass
        clus
vv       NDUFA13 MUTATED NDUFA13 WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               0                14
  CLUS_3               3                38

Clustering(81) Variable = ZIM3 MUTATION ANALYSIS
D81V1, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            0             12
  CLUS_3            6             14
  CLUS_4            1             13
D81V2, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            6             15
  CLUS_3            2             21
D81V3, binary
                cls
clus              0  1
  ZIM3 MUTATED    3  2
  ZIM3 WILD-TYPE 17 18
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIM3 MUTATED      3    2
  ZIM3 WILD-TYPE   17   18
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            3             17
  CLUS_2            2             18
D81V4, multiclass
D81V5, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            2             20
  CLUS_2            5             18
  CLUS_3            1             16
D81V6, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            2             12
  CLUS_2            5             19
  CLUS_3            1             23
D81V7, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            1             13
  CLUS_2            1              8
  CLUS_3            4             15
  CLUS_4            2             18
D81V8, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            1              6
  CLUS_2            2             12
  CLUS_3            5             36

Clustering(82) Variable = DDX3X MUTATION ANALYSIS
D82V1, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             2              14
  CLUS_2             2              10
  CLUS_3             2              18
  CLUS_4             1              13
D82V2, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             3              15
  CLUS_2             2              19
  CLUS_3             2              21
D82V3, binary
                 cls
clus               0  1
  DDX3X MUTATED    0  4
  DDX3X WILD-TYPE 20 16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DDX3X MUTATED      0    4
  DDX3X WILD-TYPE   20   16
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             0              20
  CLUS_2             4              16
D82V4, multiclass
D82V5, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             4              18
  CLUS_2             3              20
  CLUS_3             0              17
D82V6, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             1              13
  CLUS_2             2              22
  CLUS_3             4              20
D82V7, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             0              14
  CLUS_2             1               8
  CLUS_3             3              16
  CLUS_4             3              17
D82V8, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2              12
  CLUS_3             4              37

Clustering(83) Variable = LILRB4 MUTATION ANALYSIS
D83V1, multiclass
        clus
vv       LILRB4 MUTATED LILRB4 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              1               11
  CLUS_3              2               18
  CLUS_4              2               12
D83V2, multiclass
        clus
vv       LILRB4 MUTATED LILRB4 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              3               18
  CLUS_3              3               20
D83V3, binary
                  cls
clus                0  1
  LILRB4 MUTATED    3  4
  LILRB4 WILD-TYPE 17 16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LILRB4 MUTATED      3    4
  LILRB4 WILD-TYPE   17   16
        clus
vv       LILRB4 MUTATED LILRB4 WILD-TYPE
  CLUS_1              3               17
  CLUS_2              4               16
D83V4, multiclass
D83V5, multiclass
        clus
vv       LILRB4 MUTATED LILRB4 WILD-TYPE
  CLUS_1              2               20
  CLUS_2              1               22
  CLUS_3              5               12
D83V6, multiclass
        clus
vv       LILRB4 MUTATED LILRB4 WILD-TYPE
  CLUS_1              3               11
  CLUS_2              3               21
  CLUS_3              2               22
D83V7, multiclass
        clus
vv       LILRB4 MUTATED LILRB4 WILD-TYPE
  CLUS_1              3               11
  CLUS_2              3                6
  CLUS_3              1               18
  CLUS_4              1               19
D83V8, multiclass
        clus
vv       LILRB4 MUTATED LILRB4 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              1               13
  CLUS_3              6               35

Clustering(84) Variable = TLR4 MUTATION ANALYSIS
D84V1, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3              9
  CLUS_3            4             16
  CLUS_4            3             11
D84V2, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            5             13
  CLUS_2            4             17
  CLUS_3            2             21
D84V3, binary
                cls
clus              0  1
  TLR4 MUTATED    4  5
  TLR4 WILD-TYPE 16 15
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR4 MUTATED      4    5
  TLR4 WILD-TYPE   16   15
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            4             16
  CLUS_2            5             15
D84V4, multiclass
D84V5, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            3             19
  CLUS_2            5             18
  CLUS_3            3             14
D84V6, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            1             13
  CLUS_2            6             18
  CLUS_3            4             20
D84V7, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            2             12
  CLUS_2            2              7
  CLUS_3            5             14
  CLUS_4            2             18
D84V8, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            1              6
  CLUS_2            4             10
  CLUS_3            6             35

Clustering(85) Variable = ZNF479 MUTATION ANALYSIS
D85V1, multiclass
        clus
vv       ZNF479 MUTATED ZNF479 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               10
  CLUS_3              2               18
  CLUS_4              0               14
D85V2, multiclass
        clus
vv       ZNF479 MUTATED ZNF479 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              5               16
  CLUS_3              0               23
D85V3, binary
                  cls
clus                0  1
  ZNF479 MUTATED    0  3
  ZNF479 WILD-TYPE 20 17
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF479 MUTATED      0    3
  ZNF479 WILD-TYPE   20   17
        clus
vv       ZNF479 MUTATED ZNF479 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              3               17
D85V4, multiclass
D85V5, multiclass
        clus
vv       ZNF479 MUTATED ZNF479 WILD-TYPE
  CLUS_1              1               21
  CLUS_2              3               20
  CLUS_3              1               16
D85V6, multiclass
        clus
vv       ZNF479 MUTATED ZNF479 WILD-TYPE
  CLUS_1              0               14
  CLUS_2              3               21
  CLUS_3              2               22
D85V7, multiclass
        clus
vv       ZNF479 MUTATED ZNF479 WILD-TYPE
  CLUS_1              0               14
  CLUS_2              2                7
  CLUS_3              3               16
  CLUS_4              0               20
D85V8, multiclass
        clus
vv       ZNF479 MUTATED ZNF479 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              3               11
  CLUS_3              1               40

Clustering(86) Variable = GABRG1 MUTATION ANALYSIS
D86V1, multiclass
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              2               10
  CLUS_3              3               17
  CLUS_4              0               14
D86V2, multiclass
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              3               18
  CLUS_3              4               19
D86V3, binary
                  cls
clus                0  1
  GABRG1 MUTATED    2  4
  GABRG1 WILD-TYPE 18 16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG1 MUTATED      2    4
  GABRG1 WILD-TYPE   18   16
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  CLUS_1              2               18
  CLUS_2              4               16
D86V4, multiclass
D86V5, multiclass
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  CLUS_1              1               21
  CLUS_2              4               19
  CLUS_3              3               14
D86V6, multiclass
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  CLUS_1              2               12
  CLUS_2              5               19
  CLUS_3              1               23
D86V7, multiclass
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  CLUS_1              2               12
  CLUS_2              2                7
  CLUS_3              3               16
  CLUS_4              1               19
D86V8, multiclass
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              2               12
  CLUS_3              6               35

Clustering(87) Variable = KLRC3 MUTATION ANALYSIS
D87V1, multiclass
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              11
  CLUS_3             2              18
  CLUS_4             1              13
D87V2, multiclass
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1              20
  CLUS_3             3              20
D87V3, binary
                 cls
clus               0  1
  KLRC3 MUTATED    1  3
  KLRC3 WILD-TYPE 19 17
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLRC3 MUTATED      1    3
  KLRC3 WILD-TYPE   19   17
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             3              17
D87V4, multiclass
D87V5, multiclass
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             2              21
  CLUS_3             1              16
D87V6, multiclass
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             2              22
  CLUS_3             1              23
D87V7, multiclass
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             2               7
  CLUS_3             0              19
  CLUS_4             1              19
D87V8, multiclass
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2              12
  CLUS_3             1              40

Clustering(88) Variable = OR1N2 MUTATION ANALYSIS
D88V1, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             1              11
  CLUS_3             3              17
  CLUS_4             2              12
D88V2, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             3              18
  CLUS_3             4              19
D88V3, binary
                 cls
clus               0  1
  OR1N2 MUTATED    3  4
  OR1N2 WILD-TYPE 17 16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR1N2 MUTATED      3    4
  OR1N2 WILD-TYPE   17   16
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             3              17
  CLUS_2             4              16
D88V4, multiclass
D88V5, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             5              18
  CLUS_3             1              16
D88V6, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             5              19
  CLUS_3             2              22
D88V7, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             3               6
  CLUS_3             4              15
  CLUS_4             0              20
D88V8, multiclass
        clus
vv       OR1N2 MUTATED OR1N2 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             3              11
  CLUS_3             2              39

Clustering(89) Variable = HHLA2 MUTATION ANALYSIS
D89V1, multiclass
        clus
vv       HHLA2 MUTATED HHLA2 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              11
  CLUS_3             3              17
  CLUS_4             0              14
D89V2, multiclass
        clus
vv       HHLA2 MUTATED HHLA2 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             4              17
  CLUS_3             0              23
D89V3, binary
                 cls
clus               0  1
  HHLA2 MUTATED    0  5
  HHLA2 WILD-TYPE 20 15
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HHLA2 MUTATED      0    5
  HHLA2 WILD-TYPE   20   15
        clus
vv       HHLA2 MUTATED HHLA2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             5              15
D89V4, multiclass
D89V5, multiclass
        clus
vv       HHLA2 MUTATED HHLA2 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             2              21
  CLUS_3             3              14
D89V6, multiclass
        clus
vv       HHLA2 MUTATED HHLA2 WILD-TYPE
  CLUS_1             3              11
  CLUS_2             2              22
  CLUS_3             1              23
D89V7, multiclass
        clus
vv       HHLA2 MUTATED HHLA2 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             0               9
  CLUS_3             6              13
  CLUS_4             0              20
D89V8, multiclass
        clus
vv       HHLA2 MUTATED HHLA2 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             4              10
  CLUS_3             2              39

Clustering(90) Variable = SYCE1 MUTATION ANALYSIS
D90V1, multiclass
        clus
vv       SYCE1 MUTATED SYCE1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              10
  CLUS_3             3              17
  CLUS_4             1              13
D90V2, multiclass
        clus
vv       SYCE1 MUTATED SYCE1 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             3              18
  CLUS_3             1              22
D90V3, binary
                 cls
clus               0  1
  SYCE1 MUTATED    2  3
  SYCE1 WILD-TYPE 18 17
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYCE1 MUTATED      2    3
  SYCE1 WILD-TYPE   18   17
        clus
vv       SYCE1 MUTATED SYCE1 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             3              17
D90V4, multiclass
D90V5, multiclass
        clus
vv       SYCE1 MUTATED SYCE1 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             5              18
  CLUS_3             0              17
D90V6, multiclass
        clus
vv       SYCE1 MUTATED SYCE1 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             3              21
  CLUS_3             3              21
D90V7, multiclass
        clus
vv       SYCE1 MUTATED SYCE1 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             1               8
  CLUS_3             3              16
  CLUS_4             2              18
D90V8, multiclass
        clus
vv       SYCE1 MUTATED SYCE1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2              12
  CLUS_3             3              38

Clustering(91) Variable = RGPD3 MUTATION ANALYSIS
D91V1, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             4              12
  CLUS_2             4               8
  CLUS_3             2              18
  CLUS_4             2              12
D91V2, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             5              16
  CLUS_3             5              18
D91V3, binary
                 cls
clus               0  1
  RGPD3 MUTATED    1  5
  RGPD3 WILD-TYPE 19 15
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RGPD3 MUTATED      1    5
  RGPD3 WILD-TYPE   19   15
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             5              15
D91V4, multiclass
D91V5, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             3              19
  CLUS_2             4              19
  CLUS_3             5              12
D91V6, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             3              11
  CLUS_2             5              19
  CLUS_3             4              20
D91V7, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             2              12
  CLUS_2             2               7
  CLUS_3             2              17
  CLUS_4             6              14
D91V8, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             0              14
  CLUS_3            11              30

Clustering(92) Variable = CDH10 MUTATION ANALYSIS
D92V1, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             3              13
  CLUS_2             5               7
  CLUS_3             3              17
  CLUS_4             2              12
D92V2, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             4              14
  CLUS_2             5              16
  CLUS_3             4              19
D92V3, binary
                 cls
clus               0  1
  CDH10 MUTATED    3  5
  CDH10 WILD-TYPE 17 15
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED      3    5
  CDH10 WILD-TYPE   17   15
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             3              17
  CLUS_2             5              15
D92V4, multiclass
D92V5, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             4              18
  CLUS_2             5              18
  CLUS_3             4              13
D92V6, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             3              11
  CLUS_2             5              19
  CLUS_3             5              19
D92V7, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             4              10
  CLUS_2             2               7
  CLUS_3             2              17
  CLUS_4             5              15
D92V8, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2              12
  CLUS_3            10              31

Clustering(93) Variable = C6ORF105 MUTATION ANALYSIS
D93V1, multiclass
        clus
vv       C6ORF105 MUTATED C6ORF105 WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                0                 12
  CLUS_3                2                 18
  CLUS_4                0                 14
D93V2, multiclass
        clus
vv       C6ORF105 MUTATED C6ORF105 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                2                 19
  CLUS_3                2                 21
D93V3, binary
                    cls
clus                  0  1
  C6ORF105 MUTATED    2  2
  C6ORF105 WILD-TYPE 18 18
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C6ORF105 MUTATED      2    2
  C6ORF105 WILD-TYPE   18   18
        clus
vv       C6ORF105 MUTATED C6ORF105 WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                2                 18
D93V4, multiclass
D93V5, multiclass
        clus
vv       C6ORF105 MUTATED C6ORF105 WILD-TYPE
  CLUS_1                1                 21
  CLUS_2                4                 19
  CLUS_3                0                 17
D93V6, multiclass
        clus
vv       C6ORF105 MUTATED C6ORF105 WILD-TYPE
  CLUS_1                0                 14
  CLUS_2                4                 20
  CLUS_3                1                 23
D93V7, multiclass
        clus
vv       C6ORF105 MUTATED C6ORF105 WILD-TYPE
  CLUS_1                0                 14
  CLUS_2                1                  8
  CLUS_3                2                 17
  CLUS_4                2                 18
D93V8, multiclass
        clus
vv       C6ORF105 MUTATED C6ORF105 WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                0                 14
  CLUS_3                4                 37

Clustering(94) Variable = FPR2 MUTATION ANALYSIS
D94V1, multiclass
        clus
vv       FPR2 MUTATED FPR2 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            0             12
  CLUS_3            2             18
  CLUS_4            1             13
D94V2, multiclass
        clus
vv       FPR2 MUTATED FPR2 WILD-TYPE
  CLUS_1            2             16
  CLUS_2            2             19
  CLUS_3            1             22
D94V3, binary
                cls
clus              0  1
  FPR2 MUTATED    1  3
  FPR2 WILD-TYPE 19 17
[1] "tbl2"
                cls
clus             [,1] [,2]
  FPR2 MUTATED      1    3
  FPR2 WILD-TYPE   19   17
        clus
vv       FPR2 MUTATED FPR2 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            3             17
D94V4, multiclass
D94V5, multiclass
        clus
vv       FPR2 MUTATED FPR2 WILD-TYPE
  CLUS_1            1             21
  CLUS_2            2             21
  CLUS_3            2             15
D94V6, multiclass
        clus
vv       FPR2 MUTATED FPR2 WILD-TYPE
  CLUS_1            2             12
  CLUS_2            2             22
  CLUS_3            1             23
D94V7, multiclass
        clus
vv       FPR2 MUTATED FPR2 WILD-TYPE
  CLUS_1            1             13
  CLUS_2            0              9
  CLUS_3            2             17
  CLUS_4            2             18
D94V8, multiclass
        clus
vv       FPR2 MUTATED FPR2 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            3             11
  CLUS_3            2             39

Clustering(95) Variable = UGT1A7 MUTATION ANALYSIS
D95V1, multiclass
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              1               11
  CLUS_3              1               19
  CLUS_4              1               13
D95V2, multiclass
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1               20
  CLUS_3              2               21
D95V3, binary
                  cls
clus                0  1
  UGT1A7 MUTATED    2  1
  UGT1A7 WILD-TYPE 18 19
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UGT1A7 MUTATED      2    1
  UGT1A7 WILD-TYPE   18   19
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              2               18
  CLUS_2              1               19
D95V4, multiclass
D95V5, multiclass
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              2               20
  CLUS_2              1               22
  CLUS_3              1               16
D95V6, multiclass
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              0               14
  CLUS_2              2               22
  CLUS_3              2               22
D95V7, multiclass
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              0               14
  CLUS_2              2                7
  CLUS_3              0               19
  CLUS_4              2               18
D95V8, multiclass
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              1               13
  CLUS_3              3               38

Clustering(96) Variable = JAKMIP1 MUTATION ANALYSIS
D96V1, multiclass
        clus
vv       JAKMIP1 MUTATED JAKMIP1 WILD-TYPE
  CLUS_1               3                13
  CLUS_2               4                 8
  CLUS_3               1                19
  CLUS_4               1                13
D96V2, multiclass
        clus
vv       JAKMIP1 MUTATED JAKMIP1 WILD-TYPE
  CLUS_1               4                14
  CLUS_2               3                18
  CLUS_3               2                21
D96V3, binary
                   cls
clus                 0  1
  JAKMIP1 MUTATED    3  2
  JAKMIP1 WILD-TYPE 17 18
[1] "tbl2"
                   cls
clus                [,1] [,2]
  JAKMIP1 MUTATED      3    2
  JAKMIP1 WILD-TYPE   17   18
        clus
vv       JAKMIP1 MUTATED JAKMIP1 WILD-TYPE
  CLUS_1               3                17
  CLUS_2               2                18
D96V4, multiclass
D96V5, multiclass
        clus
vv       JAKMIP1 MUTATED JAKMIP1 WILD-TYPE
  CLUS_1               4                18
  CLUS_2               2                21
  CLUS_3               3                14
D96V6, multiclass
        clus
vv       JAKMIP1 MUTATED JAKMIP1 WILD-TYPE
  CLUS_1               2                12
  CLUS_2               3                21
  CLUS_3               4                20
D96V7, multiclass
        clus
vv       JAKMIP1 MUTATED JAKMIP1 WILD-TYPE
  CLUS_1               1                13
  CLUS_2               2                 7
  CLUS_3               2                17
  CLUS_4               4                16
D96V8, multiclass
        clus
vv       JAKMIP1 MUTATED JAKMIP1 WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               3                11
  CLUS_3               5                36

Clustering(97) Variable = CYLC2 MUTATION ANALYSIS
D97V1, multiclass
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              10
  CLUS_3             3              17
  CLUS_4             1              13
D97V2, multiclass
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             3              18
  CLUS_3             2              21
D97V3, binary
                 cls
clus               0  1
  CYLC2 MUTATED    2  2
  CYLC2 WILD-TYPE 18 18
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYLC2 MUTATED      2    2
  CYLC2 WILD-TYPE   18   18
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             2              18
D97V4, multiclass
D97V5, multiclass
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             4              19
  CLUS_3             1              16
D97V6, multiclass
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             5              19
  CLUS_3             1              23
D97V7, multiclass
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             3               6
  CLUS_3             0              19
  CLUS_4             3              17
D97V8, multiclass
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             0              14
  CLUS_3             4              37

Clustering(98) Variable = DRGX MUTATION ANALYSIS
D98V1, multiclass
        clus
vv       DRGX MUTATED DRGX WILD-TYPE
  CLUS_1            2             14
  CLUS_2            2             10
  CLUS_3            2             18
  CLUS_4            0             14
D98V2, multiclass
        clus
vv       DRGX MUTATED DRGX WILD-TYPE
  CLUS_1            1             17
  CLUS_2            4             17
  CLUS_3            1             22
D98V3, binary
                cls
clus              0  1
  DRGX MUTATED    2  3
  DRGX WILD-TYPE 18 17
[1] "tbl2"
                cls
clus             [,1] [,2]
  DRGX MUTATED      2    3
  DRGX WILD-TYPE   18   17
        clus
vv       DRGX MUTATED DRGX WILD-TYPE
  CLUS_1            2             18
  CLUS_2            3             17
D98V4, multiclass
D98V5, multiclass
        clus
vv       DRGX MUTATED DRGX WILD-TYPE
  CLUS_1            1             21
  CLUS_2            3             20
  CLUS_3            2             15
D98V6, multiclass
        clus
vv       DRGX MUTATED DRGX WILD-TYPE
  CLUS_1            2             12
  CLUS_2            3             21
  CLUS_3            1             23
D98V7, multiclass
        clus
vv       DRGX MUTATED DRGX WILD-TYPE
  CLUS_1            1             13
  CLUS_2            1              8
  CLUS_3            2             17
  CLUS_4            2             18
D98V8, multiclass
        clus
vv       DRGX MUTATED DRGX WILD-TYPE
  CLUS_1            1              6
  CLUS_2            1             13
  CLUS_3            4             37

Clustering(99) Variable = IDH1 MUTATION ANALYSIS
D99V1, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            1             11
  CLUS_3            0             20
  CLUS_4            2             12
D99V2, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0             21
  CLUS_3            4             19
D99V3, binary
                cls
clus              0  1
  IDH1 MUTATED    2  1
  IDH1 WILD-TYPE 18 19
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH1 MUTATED      2    1
  IDH1 WILD-TYPE   18   19
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            2             18
  CLUS_2            1             19
D99V4, multiclass
D99V5, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            2             20
  CLUS_2            0             23
  CLUS_3            3             14
D99V6, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1             13
  CLUS_2            2             22
  CLUS_3            2             22
D99V7, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             14
  CLUS_2            2              7
  CLUS_3            0             19
  CLUS_4            3             17
D99V8, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            2              5
  CLUS_2            0             14
  CLUS_3            3             38

Clustering(100) Variable = ASB5 MUTATION ANALYSIS
D100V1, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            3             13
  CLUS_2            1             11
  CLUS_3            1             19
  CLUS_4            1             13
D100V2, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2             19
  CLUS_3            3             20
D100V3, binary
                cls
clus              0  1
  ASB5 MUTATED    1  2
  ASB5 WILD-TYPE 19 18
[1] "tbl2"
                cls
clus             [,1] [,2]
  ASB5 MUTATED      1    2
  ASB5 WILD-TYPE   19   18
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            2             18
D100V4, multiclass
D100V5, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            2             20
  CLUS_2            1             22
  CLUS_3            3             14
D100V6, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            3             11
  CLUS_2            2             22
  CLUS_3            1             23
D100V7, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            1             13
  CLUS_2            2              7
  CLUS_3            0             19
  CLUS_4            3             17
D100V8, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            1              6
  CLUS_2            0             14
  CLUS_3            5             36

Clustering(101) Variable = COL21A1 MUTATION ANALYSIS
D101V1, multiclass
        clus
vv       COL21A1 MUTATED COL21A1 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               4                 8
  CLUS_3               2                18
  CLUS_4               4                10
D101V2, multiclass
        clus
vv       COL21A1 MUTATED COL21A1 WILD-TYPE
  CLUS_1               4                14
  CLUS_2               3                18
  CLUS_3               4                19
D101V3, binary
                   cls
clus                 0  1
  COL21A1 MUTATED    4  4
  COL21A1 WILD-TYPE 16 16
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL21A1 MUTATED      4    4
  COL21A1 WILD-TYPE   16   16
        clus
vv       COL21A1 MUTATED COL21A1 WILD-TYPE
  CLUS_1               4                16
  CLUS_2               4                16
D101V4, multiclass
D101V5, multiclass
        clus
vv       COL21A1 MUTATED COL21A1 WILD-TYPE
  CLUS_1               3                19
  CLUS_2               5                18
  CLUS_3               3                14
D101V6, multiclass
        clus
vv       COL21A1 MUTATED COL21A1 WILD-TYPE
  CLUS_1               1                13
  CLUS_2               4                20
  CLUS_3               6                18
D101V7, multiclass
        clus
vv       COL21A1 MUTATED COL21A1 WILD-TYPE
  CLUS_1               2                12
  CLUS_2               3                 6
  CLUS_3               4                15
  CLUS_4               2                18
D101V8, multiclass
        clus
vv       COL21A1 MUTATED COL21A1 WILD-TYPE
  CLUS_1               2                 5
  CLUS_2               3                11
  CLUS_3               6                35

Clustering(102) Variable = OR4M2 MUTATION ANALYSIS
D102V1, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             3              13
  CLUS_2             1              11
  CLUS_3             1              19
  CLUS_4             2              12
D102V2, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1              20
  CLUS_3             4              19
D102V3, binary
                 cls
clus               0  1
  OR4M2 MUTATED    3  3
  OR4M2 WILD-TYPE 17 17
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M2 MUTATED      3    3
  OR4M2 WILD-TYPE   17   17
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             3              17
  CLUS_2             3              17
D102V4, multiclass
D102V5, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             3              19
  CLUS_2             3              20
  CLUS_3             1              16
D102V6, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             3              21
  CLUS_3             3              21
D102V7, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             1               8
  CLUS_3             2              17
  CLUS_4             3              17
D102V8, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             0              14
  CLUS_3             6              35

Clustering(103) Variable = ANKRD45 MUTATION ANALYSIS
D103V1, multiclass
        clus
vv       ANKRD45 MUTATED ANKRD45 WILD-TYPE
  CLUS_1               5                11
  CLUS_2               0                12
  CLUS_3               1                19
  CLUS_4               1                13
D103V2, multiclass
        clus
vv       ANKRD45 MUTATED ANKRD45 WILD-TYPE
  CLUS_1               3                15
  CLUS_2               1                20
  CLUS_3               3                20
D103V3, binary
                   cls
clus                 0  1
  ANKRD45 MUTATED    3  4
  ANKRD45 WILD-TYPE 17 16
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD45 MUTATED      3    4
  ANKRD45 WILD-TYPE   17   16
        clus
vv       ANKRD45 MUTATED ANKRD45 WILD-TYPE
  CLUS_1               3                17
  CLUS_2               4                16
D103V4, multiclass
D103V5, multiclass
        clus
vv       ANKRD45 MUTATED ANKRD45 WILD-TYPE
  CLUS_1               2                20
  CLUS_2               3                20
  CLUS_3               2                15
D103V6, multiclass
        clus
vv       ANKRD45 MUTATED ANKRD45 WILD-TYPE
  CLUS_1               2                12
  CLUS_2               4                20
  CLUS_3               1                23
D103V7, multiclass
        clus
vv       ANKRD45 MUTATED ANKRD45 WILD-TYPE
  CLUS_1               1                13
  CLUS_2               0                 9
  CLUS_3               3                16
  CLUS_4               3                17
D103V8, multiclass
        clus
vv       ANKRD45 MUTATED ANKRD45 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               0                14
  CLUS_3               7                34

Clustering(104) Variable = LCE1B MUTATION ANALYSIS
D104V1, multiclass
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             2              14
  CLUS_2             2              10
  CLUS_3             0              20
  CLUS_4             1              13
D104V2, multiclass
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1              20
  CLUS_3             2              21
D104V3, binary
                 cls
clus               0  1
  LCE1B MUTATED    1  3
  LCE1B WILD-TYPE 19 17
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LCE1B MUTATED      1    3
  LCE1B WILD-TYPE   19   17
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             1              19
  CLUS_2             3              17
D104V4, multiclass
D104V5, multiclass
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             1              21
  CLUS_2             1              22
  CLUS_3             3              14
D104V6, multiclass
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             1              13
  CLUS_2             2              22
  CLUS_3             2              22
D104V7, multiclass
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             0              14
  CLUS_2             2               7
  CLUS_3             1              18
  CLUS_4             2              18
D104V8, multiclass
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             1               6
  CLUS_2             0              14
  CLUS_3             4              37

Clustering(105) Variable = MGAM MUTATION ANALYSIS
D105V1, multiclass
        clus
vv       MGAM MUTATED MGAM WILD-TYPE
  CLUS_1            4             12
  CLUS_2            5              7
  CLUS_3            7             13
  CLUS_4            5              9
D105V2, multiclass
        clus
vv       MGAM MUTATED MGAM WILD-TYPE
  CLUS_1            5             13
  CLUS_2            6             15
  CLUS_3           10             13
D105V3, binary
                cls
clus              0  1
  MGAM MUTATED    6  7
  MGAM WILD-TYPE 14 13
[1] "tbl2"
                cls
clus             [,1] [,2]
  MGAM MUTATED      6    7
  MGAM WILD-TYPE   14   13
        clus
vv       MGAM MUTATED MGAM WILD-TYPE
  CLUS_1            6             14
  CLUS_2            7             13
D105V4, multiclass
D105V5, multiclass
        clus
vv       MGAM MUTATED MGAM WILD-TYPE
  CLUS_1            5             17
  CLUS_2            8             15
  CLUS_3            8              9
D105V6, multiclass
        clus
vv       MGAM MUTATED MGAM WILD-TYPE
  CLUS_1            6              8
  CLUS_2            8             16
  CLUS_3            7             17
D105V7, multiclass
        clus
vv       MGAM MUTATED MGAM WILD-TYPE
  CLUS_1            6              8
  CLUS_2            3              6
  CLUS_3            5             14
  CLUS_4            7             13
D105V8, multiclass
        clus
vv       MGAM MUTATED MGAM WILD-TYPE
  CLUS_1            1              6
  CLUS_2            4             10
  CLUS_3           16             25

Clustering(106) Variable = ACSM2B MUTATION ANALYSIS
D106V1, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1              4               12
  CLUS_2              2               10
  CLUS_3              2               18
  CLUS_4              1               13
D106V2, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1              2               16
  CLUS_2              2               19
  CLUS_3              5               18
D106V3, binary
                  cls
clus                0  1
  ACSM2B MUTATED    3  3
  ACSM2B WILD-TYPE 17 17
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACSM2B MUTATED      3    3
  ACSM2B WILD-TYPE   17   17
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1              3               17
  CLUS_2              3               17
D106V4, multiclass
D106V5, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1              4               18
  CLUS_2              1               22
  CLUS_3              4               13
D106V6, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1              4               10
  CLUS_2              2               22
  CLUS_3              3               21
D106V7, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1              5                9
  CLUS_2              1                8
  CLUS_3              1               18
  CLUS_4              2               18
D106V8, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1              0                7
  CLUS_2              2               12
  CLUS_3              7               34
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"             "RPPA_CNMF" 
                     V4                      V5                      V6 
   "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL" 
                     V7                      V8 
          "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
