
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.48.4103/CNV2ClinicalAnalysis_nozzle_onlysig_focal.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.48.4103/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/404124/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/SKCM-Regional_LN/3215665/SKCM-Regional_LN.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SKCM-Regional_LN", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"                  "-oT=SKCM-Regional_LN"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=116, in cluster file=112, common to both=112
[1]  39 112
[1] "Amp Peak  1(1p12) mutation analysis"
[1] 3
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         32                          80 
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         32                          80 
[1] "Amp Peak  2(1q44) mutation analysis"
[1] 3
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                         54                          58 
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                         54                          58 
[1] "Amp Peak  3(3p13) mutation analysis"
[1] 3
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                         24                          88 
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                         24                          88 
[1] "Amp Peak  4(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                            32                             80 
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                            32                             80 
[1] "Amp Peak  5(5q35.3) mutation analysis"
[1] 3
  AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE 
                           13                            99 
  AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE 
                           13                            99 
[1] "Amp Peak  6(6p25.1) mutation analysis"
[1] 3
  AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE 
                           61                            51 
  AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE 
                           61                            51 
[1] "Amp Peak  7(6q12) mutation analysis"
[1] 3
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         23                          89 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         23                          89 
[1] "Amp Peak  8(7p22.1) mutation analysis"
[1] 3
  AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE 
                           60                            52 
  AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE 
                           60                            52 
[1] "Amp Peak  9(7q34) mutation analysis"
[1] 3
  AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE 
                         62                          50 
  AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE 
                         62                          50 
[1] "Amp Peak 10(8q11.21) mutation analysis"
[1] 3
  AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE 
                            41                             71 
  AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE 
                            41                             71 
[1] "Amp Peak 11(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            50                             62 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            50                             62 
[1] "Amp Peak 12(9p24.1) mutation analysis"
[1] 3
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                            5                           107 
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                            5                           107 
[1] "Amp Peak 13(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                            19                             93 
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                            19                             93 
[1] "Amp Peak 14(12q14.1) mutation analysis"
[1] 3
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                            20                             92 
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                            20                             92 
[1] "Amp Peak 15(15q26.2) mutation analysis"
[1] 3
  AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE 
                            43                             69 
  AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE 
                            43                             69 
[1] "Amp Peak 16(17q25.3) mutation analysis"
[1] 3
  AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE 
                            44                             68 
  AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE 
                            44                             68 
[1] "Amp Peak 17(19p13.2) mutation analysis"
[1] 3
  AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE 
                            19                             93 
  AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE 
                            19                             93 
[1] "Amp Peak 18(22q13.2) mutation analysis"
[1] 3
  AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE 
                            48                             64 
  AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE 
                            48                             64 
[1] "Del Peak  1(1p36.31) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            27                             85 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            27                             85 
[1] "Del Peak  2(1p21.3) mutation analysis"
[1] 3
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                           30                            82 
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                           30                            82 
[1] "Del Peak  3(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           21                            91 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           21                            91 
[1] "Del Peak  4(3p24.3) mutation analysis"
[1] 3
  DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE 
                           17                            95 
  DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE 
                           17                            95 
[1] "Del Peak  5(4q34.3) mutation analysis"
[1] 3
  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                           23                            89 
  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                           23                            89 
[1] "Del Peak  6(5q31.3) mutation analysis"
[1] 3
  DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE 
                           45                            67 
  DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE 
                           45                            67 
[1] "Del Peak  7(6q25.3) mutation analysis"
[1] 3
  DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE 
                           67                            45 
  DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE 
                           67                            45 
[1] "Del Peak  8(6q26) mutation analysis"
[1] 3
  DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE 
                         63                          49 
  DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE 
                         63                          49 
[1] "Del Peak  9(8p23.3) mutation analysis"
[1] 3
  DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE 
                           29                            83 
  DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE 
                           29                            83 
[1] "Del Peak 10(9p23) mutation analysis"
[1] 3
  DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE 
                         75                          37 
  DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE 
                         75                          37 
[1] "Del Peak 11(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           86                            26 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           86                            26 
[1] "Del Peak 12(10p15.3) mutation analysis"
[1] 3
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                            55                             57 
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                            55                             57 
[1] "Del Peak 13(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             64                              48 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             64                              48 
[1] "Del Peak 14(11q23.1) mutation analysis"
[1] 3
  DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE 
                            61                             51 
  DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE 
                            61                             51 
[1] "Del Peak 15(12q24.33) mutation analysis"
[1] 3
  DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE 
                             21                              91 
  DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE 
                             21                              91 
[1] "Del Peak 16(13q34) mutation analysis"
[1] 3
  DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE 
                          31                           81 
  DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE 
                          31                           81 
[1] "Del Peak 17(15q13.3) mutation analysis"
[1] 3
  DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE 
                            25                             87 
  DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE 
                            25                             87 
[1] "Del Peak 18(15q15.3) mutation analysis"
[1] 3
  DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE 
                            26                             86 
  DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE 
                            26                             86 
[1] "Del Peak 19(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                            22                             90 
  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                            22                             90 
[1] "Del Peak 20(16q12.1) mutation analysis"
[1] 3
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                            38                             74 
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                            38                             74 
[1] "Del Peak 21(16q24.2) mutation analysis"
[1] 3
  DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE 
                            43                             69 
  DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE 
                            43                             69 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "DAYSTOSUBMITTEDSPECIMENDX"             
 [5] "VITALSTATUS"                           
 [6] "DCCUPLOADDATE"                         
 [7] "PRIMARYSITEOFDESEASE"                  
 [8] "GENDER"                                
 [9] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[10] "RADIATIONTHERAPY"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "DISTANT.METASTASIS"                    
[13] "LYMPH.NODE.METASTASIS"                 
[14] "TUMOR.STAGECODE"                       
[15] "NEOPLASM.DISEASESTAGE"                 
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 112 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
          NA           NA         3687           NA           NA           NA 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE 
          NA           NA           NA           NA           NA           NA 
TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 
          NA         4511           82          194          345           98 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F3 
        1487           NA         3564           NA          713           NA 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
        6553          477           NA           NA           NA           NA 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
          NA         2399         1455           NA         1205          979 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
          NA           NA         1716          440         1700        10523 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB 
          NA           NA         2401          743         1787         1446 
TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
        1315         4134         5536          686         2717         1664 
TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
        1673         1691          595         2042           NA         3931 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
          NA           NA           NA         4403         6175           NA 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
          NA         7562           NA         3150         4150         1265 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
         129         3733          786          112          813           NA 
TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
          NA           NA           NA           NA           NA         1340 
TCGA-ER-A19O TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z4 
          NA         2433         2448         4885           NA           NA 
TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZP 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-FW-A3TV TCGA-GN-A264 
        4525         1505          378          699           NA           NA 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
        2577           NA           NA         1204 
Variable 1:'AGE':	nDistinctValues=55,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=54,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=56,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOSUBMITTEDSPECIMENDX':	nDistinctValues=57,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 6:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=24,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DISTANT.METASTASIS':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'LYMPH.NODE.METASTASIS':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGECODE':	nDistinctValues=15,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NEOPLASM.DISEASESTAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                   "GENDER"                "DISTANT.METASTASIS"   
[4] "LYMPH.NODE.METASTASIS" "TUMOR.STAGECODE"       "NEOPLASM.DISEASESTAGE"
[1] "TUMOR.?STAGE" "5"           
[1] "stage2"
vv
 T0  T1 T1A T1B  T2 T2A T2B  T3 T3A T3B  T4 T4A T4B TIS  TX 
  4   4  10   3  12  12   4   3  13   7   1   5  15   1   8 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 112 columns, 1 survival variables, and 6 non-survival variables.
AGE, nv=55, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
DISTANT.METASTASIS, nv=4, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=10, binary=FALSE, numeric=FALSE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=13, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p12) mutation analysis
D1V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  1(1P12) MUTATED   13 19
  AMP PEAK  1(1P12) WILD-TYPE 42 36
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         32                          78 
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         19                          36 
$`AMP PEAK  1(1P12) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A3F3 
       16.57        43.40        11.87        11.34         3.22        10.49 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       33.73        26.86         4.93        47.84        13.97        39.62 
TCGA-EE-A29L TCGA-EE-A29X TCGA-EE-A2GB TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GL 
        2.56        17.92        47.54        22.55        89.33        55.00 
TCGA-EE-A2MD TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MM TCGA-EE-A2MQ TCGA-EE-A2MR 
       47.28       204.62        96.23       167.87        43.23       103.56 
TCGA-EE-A3AB TCGA-EE-A3AD TCGA-ER-A19L TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1ZH 
      122.73         3.68       131.08        80.48       160.60        32.71 
TCGA-GN-A264 TCGA-GN-A267 
      117.93        64.41 

$`AMP PEAK  1(1P12) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 
      112.54       121.22        28.08        31.59        65.49        23.77 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JW 
       12.10        58.03        60.23        24.53       148.31         2.70 
TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1IB 
        6.38        48.89        36.03       117.17       176.55        23.44 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A20F TCGA-EE-A29H 
      215.44        15.68        29.82         8.65        78.87        32.19 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A2A0 
       18.58        56.42        14.47        55.89       345.96        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH 
       78.94        24.43        58.75        43.23       135.91       182.01 
TCGA-EE-A2GK TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       54.71        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       28.80        19.76        61.51       103.27       103.17        16.96 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A2MT 
      144.76       203.01        47.54       248.61       136.44        41.59 
TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19F 
        4.24        25.84        26.73        13.81       138.77        26.37 
TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1YW TCGA-FS-A1Z4 
        6.41        61.05        44.05        79.99       216.92        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZP TCGA-FS-A1ZS 
        7.76        53.52         9.70        47.38        74.73       148.77 
TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A265 TCGA-GN-A268 TCGA-GN-A26D 
       49.48        12.43        22.98        84.72        62.76        39.58 

  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                       2.56                        2.70 
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                     204.62                      345.96 
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                     43.315                      48.215 
[1] "2.6 - 204.6 (43.3)" "2.7 - 346.0 (48.2)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
  "AMP PEAK  1(1P12) MUTATED"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "AMP PEAK  1(1P12) MUTATED" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"AMP PEAK  1(1P12) WILD-TYPE"   "AMP PEAK  1(1P12) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
"AMP PEAK  1(1P12) WILD-TYPE" "AMP PEAK  1(1P12) WILD-TYPE" 
[1] "hr=" "1.5"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  1(1P12) MUTATED      9   23
  AMP PEAK  1(1P12) WILD-TYPE   26   54
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  FEMALE                         9                          26
  MALE                          23                          54
                             vv
clus                          M0 M1 M1B M1C
  AMP PEAK  1(1P12) MUTATED   27  0   0   1
  AMP PEAK  1(1P12) WILD-TYPE 71  1   2   0
D1V4, multiclass
     clus
vv    AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  M0                         27                          71
  M1                          0                           1
  M1B                         0                           2
  M1C                         1                           0
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  1(1P12) MUTATED   15  0   2   4  0   1   1   1  4  0
  AMP PEAK  1(1P12) WILD-TYPE 46  1   1   6  1   2   7   0  9  2
D1V5, multiclass
D1V6, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  1(1P12) MUTATED             0       3        2        3        4
  AMP PEAK  1(1P12) WILD-TYPE           1      12        5        8        9
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  1(1P12) MUTATED           1         2         0         0
  AMP PEAK  1(1P12) WILD-TYPE         4         3         2         4
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  1(1P12) MUTATED            3          3          6        1
  AMP PEAK  1(1P12) WILD-TYPE          0          7         12        2
D1V7, multiclass

Clustering(2) Variable = Amp Peak  2(1q44) mutation analysis
D2V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  2(1Q44) MUTATED   32 22
  AMP PEAK  2(1Q44) WILD-TYPE 23 33
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                         54                          56 
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                         22                          33 
$`AMP PEAK  2(1Q44) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD 
       16.57       121.22        28.08        65.49        23.77        11.87 
TCGA-D3-A3CE TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HY 
       60.23         2.70         6.38        11.34         3.22       117.17 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A29D 
       10.49       215.44         8.65        33.73         4.93        13.97 
TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2A1 
       39.62         2.56        56.42        14.47       345.96        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       24.43        58.75        47.54       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M7 TCGA-EE-A2MJ TCGA-EE-A2ML 
       89.33        55.59        67.13        28.80        96.23       203.01 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AH TCGA-ER-A19F TCGA-FR-A3YN 
      122.73        25.84         3.68       138.77        26.37        80.48 
TCGA-FR-A44A TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZP TCGA-GN-A267 TCGA-GN-A26D 
      160.60        32.71        47.38        74.73        64.41        39.58 

$`AMP PEAK  2(1Q44) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CF 
      112.54        31.59        43.40        12.10        58.03        24.53 
TCGA-D9-A148 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F8 
      148.31        48.89        36.03       176.55        23.44        15.68 
TCGA-EE-A17X TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29N 
       29.82        26.86        78.87        47.84        32.19        18.58 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2GC TCGA-EE-A2GK TCGA-EE-A2GL 
       55.89        17.92        46.82        43.23        54.71        55.00 
TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       19.56        21.67       129.24        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MM 
      103.27       103.17        16.96       204.62       144.76       167.87 
TCGA-EE-A3AA TCGA-EE-A3AE TCGA-EE-A3AF TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        4.24        26.73        13.81         6.41       131.08        61.05 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZD 
       44.05        79.99       216.92        28.08         7.76        53.52 
TCGA-FS-A1ZG TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A264 
        9.70       148.77        49.48        12.43        22.98       117.93 
TCGA-GN-A265 TCGA-GN-A268 
       84.72        62.76 

  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                       2.56                        4.24 
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                     345.96                      216.92 
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                      47.46                       47.05 
[1] "2.6 - 346.0 (47.5)" "4.2 - 216.9 (47.0)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "AMP PEAK  2(1Q44) MUTATED"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
  "AMP PEAK  2(1Q44) MUTATED" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
"AMP PEAK  2(1Q44) WILD-TYPE"   "AMP PEAK  2(1Q44) MUTATED" 
[1] "hr=" "1.5"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q44) MUTATED     17   37
  AMP PEAK  2(1Q44) WILD-TYPE   18   40
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  FEMALE                        17                          18
  MALE                          37                          40
                             vv
clus                          M0 M1 M1B M1C
  AMP PEAK  2(1Q44) MUTATED   48  0   1   1
  AMP PEAK  2(1Q44) WILD-TYPE 50  1   1   0
D2V4, multiclass
     clus
vv    AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  M0                         48                          50
  M1                          0                           1
  M1B                         1                           1
  M1C                         1                           0
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  2(1Q44) MUTATED   28  0   2   7  0   2   1   1  8  2
  AMP PEAK  2(1Q44) WILD-TYPE 33  1   1   3  1   1   7   0  5  0
D2V5, multiclass
D2V6, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  2(1Q44) MUTATED             0       6        4        6        8
  AMP PEAK  2(1Q44) WILD-TYPE           1       9        3        5        5
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  2(1Q44) MUTATED           0         1         2         1
  AMP PEAK  2(1Q44) WILD-TYPE         5         4         0         3
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  2(1Q44) MUTATED            3          4         10        2
  AMP PEAK  2(1Q44) WILD-TYPE          0          6          8        1
D2V7, multiclass

Clustering(3) Variable = Amp Peak  3(3p13) mutation analysis
D3V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  3(3P13) MUTATED   13 11
  AMP PEAK  3(3P13) WILD-TYPE 42 44
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                         24                          86 
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                         11                          44 
$`AMP PEAK  3(3P13) MUTATED`
TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2JD TCGA-D3-A3CE TCGA-DA-A1HW TCGA-DA-A3F5 
       31.59        65.49        11.87        60.23        36.03       215.44 
TCGA-DA-A3F8 TCGA-EE-A20F TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29R TCGA-EE-A29T 
       15.68        78.87        32.19         2.56        14.47       345.96 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2MP TCGA-EE-A3AE 
      182.01        22.55        21.67       129.24       248.61        26.73 
TCGA-ER-A19L TCGA-ER-A19M TCGA-FR-A44A TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A268 
      131.08        61.05       160.60       117.93        84.72        62.76 

$`AMP PEAK  3(3P13) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J9 
       16.57       112.54       121.22        28.08        43.40        23.77 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX 
       12.10        58.03        24.53       148.31         2.70         6.38 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1IB 
       11.34         3.22        48.89       117.17       176.55        23.44 
TCGA-DA-A3F3 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 
       10.49        29.82         8.65        33.73        26.86         4.93 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S 
       47.84        13.97        39.62        18.58        56.42        55.89 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB 
       17.92        46.82        78.94        24.43        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS 
       43.23       135.91        89.33        54.71        55.00        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       19.56        67.13        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      203.01       167.87        47.54        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF 
       41.59         4.24       122.73        25.84         3.68        13.81 
TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A3YN 
      138.77        26.37         6.41        44.05        79.99        80.48 
TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZH 
      216.92        28.08         7.76        53.52         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZP TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 
       47.38        74.73       148.77        49.48        12.43        22.98 
TCGA-GN-A267 TCGA-GN-A26D 
       64.41        39.58 

  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                       2.56                        2.70 
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                     345.96                      216.92 
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                     61.905                      45.435 
[1] "2.6 - 346.0 (61.9)" "2.7 - 216.9 (45.4)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
  "AMP PEAK  3(3P13) MUTATED"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
"AMP PEAK  3(3P13) WILD-TYPE" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  3(3P13) WILD-TYPE"   "AMP PEAK  3(3P13) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "AMP PEAK  3(3P13) MUTATED" "AMP PEAK  3(3P13) WILD-TYPE" 
[1] "hr=" "1.6"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  3(3P13) MUTATED      9   15
  AMP PEAK  3(3P13) WILD-TYPE   26   62
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  FEMALE                         9                          26
  MALE                          15                          62
                             vv
clus                          M0 M1 M1B M1C
  AMP PEAK  3(3P13) MUTATED   21  0   0   0
  AMP PEAK  3(3P13) WILD-TYPE 77  1   2   1
D3V4, multiclass
     clus
vv    AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  M0                         21                          77
  M1                          0                           1
  M1B                         0                           2
  M1C                         0                           1
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  3(3P13) MUTATED   12  0   0   4  0   1   1   0  2  1
  AMP PEAK  3(3P13) WILD-TYPE 49  1   3   6  1   2   7   1 11  1
D3V5, multiclass
D3V6, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  3(3P13) MUTATED             0       4        3        2        2
  AMP PEAK  3(3P13) WILD-TYPE           1      11        4        9       11
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  3(3P13) MUTATED           0         1         0         1
  AMP PEAK  3(3P13) WILD-TYPE         5         4         2         3
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  3(3P13) MUTATED            0          3          4        0
  AMP PEAK  3(3P13) WILD-TYPE          3          7         14        3
D3V7, multiclass

Clustering(4) Variable = Amp Peak  4(5p15.33) mutation analysis
D4V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  4(5P15.33) MUTATED   17 14
  AMP PEAK  4(5P15.33) WILD-TYPE 38 41
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                            31                             79 
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                            14                             41 
$`AMP PEAK  4(5P15.33) MUTATED`
TCGA-D3-A1Q9 TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JW 
       31.59        12.10        58.03        24.53       148.31         2.70 
TCGA-DA-A1HV TCGA-DA-A1I2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A181 TCGA-EE-A29D 
       48.89       176.55        10.49       215.44        33.73        13.97 
TCGA-EE-A29E TCGA-EE-A29T TCGA-EE-A2A0 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MP 
       39.62       345.96        46.82       129.24        28.80       248.61 
TCGA-EE-A2MS TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AH 
      136.44         4.24       122.73         3.68        26.73       138.77 
TCGA-ER-A19M TCGA-ER-A19N TCGA-FR-A44A TCGA-FS-A1ZG TCGA-GN-A264 TCGA-GN-A265 
       61.05        44.05       160.60         9.70       117.93        84.72 
TCGA-GN-A26D 
       39.58 

$`AMP PEAK  4(5P15.33) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 
       16.57       112.54       121.22        28.08        43.40        65.49 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A3CE TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       23.77        11.87        60.23         6.38        11.34         3.22 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1IB TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       36.03       117.17        23.44        15.68        29.82         8.65 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L 
       26.86         4.93        78.87        47.84        32.19         2.56 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A1 
       18.58        56.42        14.47        55.89        17.92        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH 
       24.43        58.75        47.54        43.23       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GT 
       22.55        89.33        54.71        55.00        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
       67.13        21.67        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A3AC 
      167.87        47.54        43.23       103.56        41.59        25.84 
TCGA-EE-A3AF TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A1A1 TCGA-FR-A3YN 
       13.81        26.37         6.41       131.08        79.99        80.48 
TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZH TCGA-FS-A1ZJ 
      216.92        28.08         7.76        53.52        32.71        47.38 
TCGA-FS-A1ZP TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A267 
       74.73       148.77        49.48        12.43        22.98        64.41 
TCGA-GN-A268 
       62.76 

  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                          2.70                           2.56 
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                        345.96                         216.92 
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                         46.82                          47.38 
[1] "2.7 - 346.0 (46.8)" "2.6 - 216.9 (47.4)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
[1] "hr=" "1.5"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(5P15.33) MUTATED     11   21
  AMP PEAK  4(5P15.33) WILD-TYPE   24   56
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  FEMALE                           11                             24
  MALE                             21                             56
                                vv
clus                             M0 M1 M1B M1C
  AMP PEAK  4(5P15.33) MUTATED   24  0   1   0
  AMP PEAK  4(5P15.33) WILD-TYPE 74  1   1   1
D4V4, multiclass
     clus
vv    AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  M0                            24                             74
  M1                             0                              1
  M1B                            1                              1
  M1C                            0                              1
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  4(5P15.33) MUTATED   12  0   0   3  0   2   5   0  3  1
  AMP PEAK  4(5P15.33) WILD-TYPE 49  1   3   7  1   1   3   1 10  1
D4V5, multiclass
D4V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  4(5P15.33) MUTATED             0       2        1        2        5
  AMP PEAK  4(5P15.33) WILD-TYPE           1      13        6        9        8
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  4(5P15.33) MUTATED           1         0         1         0
  AMP PEAK  4(5P15.33) WILD-TYPE         4         5         1         4
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  4(5P15.33) MUTATED            0          5          6        0
  AMP PEAK  4(5P15.33) WILD-TYPE          3          5         12        3
D4V7, multiclass

Clustering(5) Variable = Amp Peak  5(5q35.3) mutation analysis
D5V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  5(5Q35.3) MUTATED    8  5
  AMP PEAK  5(5Q35.3) WILD-TYPE 47 50
  AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE 
                           13                            97 
  AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE 
                            5                            50 
$`AMP PEAK  5(5Q35.3) MUTATED`
TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JW TCGA-EE-A29H TCGA-EE-A29R TCGA-EE-A29T 
       24.53       148.31         2.70        32.19        14.47       345.96 
TCGA-EE-A2GJ TCGA-EE-A2M7 TCGA-EE-A2MS TCGA-EE-A2MT TCGA-ER-A19F TCGA-FS-A1ZD 
       89.33        28.80       136.44        41.59        26.37        53.52 
TCGA-FS-A1ZJ 
       47.38 

$`AMP PEAK  5(5Q35.3) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE 
       65.49        23.77        11.87        12.10        58.03        60.23 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
        6.38        11.34         3.22        48.89        36.03       117.17 
TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
      176.55        23.44        10.49       215.44        15.68        29.82 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C 
        8.65        33.73        26.86         4.93        78.87        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S 
       13.97        39.62         2.56        18.58        56.42        55.89 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB 
       17.92        46.82        78.94        24.43        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL 
       43.23       135.91       182.01        22.55        54.71        55.00 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M8 
       55.59        19.56        67.13        21.67       129.24        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       43.23       103.56         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
       26.73        13.81       138.77         6.41       131.08        61.05 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z4 
       44.05        79.99        80.48       160.60       216.92        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZP TCGA-FS-A1ZS TCGA-FS-A1ZW 
        7.76         9.70        32.71        74.73       148.77        49.48 
TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       12.43        22.98       117.93        84.72        64.41        62.76 
TCGA-GN-A26D 
       39.58 

  AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE 
                         2.70                          2.56 
  AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE 
                       345.96                        248.61 
  AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE 
                        41.59                         47.54 
[1] "2.7 - 346.0 (41.6)" "2.6 - 248.6 (47.5)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
  "AMP PEAK  5(5Q35.3) MUTATED"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
  "AMP PEAK  5(5Q35.3) MUTATED" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
  "AMP PEAK  5(5Q35.3) MUTATED" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "AMP PEAK  5(5Q35.3) MUTATED" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "AMP PEAK  5(5Q35.3) MUTATED"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
  "AMP PEAK  5(5Q35.3) MUTATED" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
  "AMP PEAK  5(5Q35.3) MUTATED"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
  "AMP PEAK  5(5Q35.3) MUTATED" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
  "AMP PEAK  5(5Q35.3) MUTATED" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "AMP PEAK  5(5Q35.3) MUTATED" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "AMP PEAK  5(5Q35.3) MUTATED"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
  "AMP PEAK  5(5Q35.3) MUTATED" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
  "AMP PEAK  5(5Q35.3) MUTATED"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
  "AMP PEAK  5(5Q35.3) MUTATED" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
  "AMP PEAK  5(5Q35.3) MUTATED" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "AMP PEAK  5(5Q35.3) MUTATED" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "AMP PEAK  5(5Q35.3) MUTATED"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
  "AMP PEAK  5(5Q35.3) MUTATED" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"AMP PEAK  5(5Q35.3) WILD-TYPE"   "AMP PEAK  5(5Q35.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"AMP PEAK  5(5Q35.3) WILD-TYPE" "AMP PEAK  5(5Q35.3) WILD-TYPE" 
[1] "hr=" "1.4"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(5Q35.3) MUTATED      5    8
  AMP PEAK  5(5Q35.3) WILD-TYPE   30   69
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  FEMALE                           5                            30
  MALE                             8                            69
                               vv
clus                            M0 M1 M1B M1C
  AMP PEAK  5(5Q35.3) MUTATED   12  0   1   0
  AMP PEAK  5(5Q35.3) WILD-TYPE 86  1   1   1
D5V4, multiclass
     clus
vv    AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  M0                           12                            86
  M1                            0                             1
  M1B                           1                             1
  M1C                           0                             1
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  5(5Q35.3) MUTATED    8  0   0   1  0   1   0   0  2  1
  AMP PEAK  5(5Q35.3) WILD-TYPE 53  1   3   9  1   2   8   1 11  1
D5V5, multiclass
D5V6, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  5(5Q35.3) MUTATED             0       1        2        1        2
  AMP PEAK  5(5Q35.3) WILD-TYPE           1      14        5       10       11
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  5(5Q35.3) MUTATED           1         0         0         0
  AMP PEAK  5(5Q35.3) WILD-TYPE         4         5         2         4
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  5(5Q35.3) MUTATED            0          0          2        0
  AMP PEAK  5(5Q35.3) WILD-TYPE          3         10         16        3
D5V7, multiclass

Clustering(6) Variable = Amp Peak  6(6p25.1) mutation analysis
D6V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  6(6P25.1) MUTATED   25 35
  AMP PEAK  6(6P25.1) WILD-TYPE 30 20
  AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE 
                           60                            50 
  AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE 
                           35                            20 
$`AMP PEAK  6(6P25.1) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A3C6 
       16.57       121.22        31.59        65.49        23.77        58.03 
TCGA-D3-A3CE TCGA-D9-A148 TCGA-D9-A1JW TCGA-DA-A1HV TCGA-DA-A1I2 TCGA-DA-A3F3 
       60.23       148.31         2.70        48.89       176.55        10.49 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A29D TCGA-EE-A29L 
        8.65        33.73        26.86         4.93        13.97         2.56 
TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A2GB TCGA-EE-A2GH TCGA-EE-A2GJ 
       56.42        14.47        55.89        47.54       182.01        89.33 
TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.00        55.59        19.56        67.13       129.24        28.80 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM 
       47.28       103.27       204.62        96.23       144.76       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A3AA TCGA-EE-A3AD 
       47.54       248.61        43.23       136.44         4.24         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N 
       26.73        13.81        26.37         6.41        61.05        44.05 
TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZP 
      216.92        28.08         9.70        32.71        47.38        74.73 
TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       49.48        12.43       117.93        64.41        62.76        39.58 

$`AMP PEAK  6(6P25.1) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3CF 
      112.54        28.08        43.40        11.87        12.10        24.53 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1IB 
        6.38        11.34         3.22        36.03       117.17        23.44 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E 
      215.44        15.68        29.82        78.87        47.84        39.62 
TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       32.19        18.58       345.96        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GK 
       24.43        58.75        43.23       135.91        22.55        54.71 
TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2ML 
       21.67        19.76        61.51       103.17        16.96       203.01 
TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AH TCGA-ER-A19L 
      103.56        41.59       122.73        25.84       138.77       131.08 
TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZS 
       79.99        80.48       160.60         7.76        53.52       148.77 
TCGA-FW-A3R5 TCGA-GN-A265 
       22.98        84.72 

  AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE 
                         2.56                          3.22 
  AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE 
                       248.61                        345.96 
  AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE 
                       47.540                        43.315 
[1] "2.6 - 248.6 (47.5)" "3.2 - 346.0 (43.3)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"AMP PEAK  6(6P25.1) WILD-TYPE" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
  "AMP PEAK  6(6P25.1) MUTATED" "AMP PEAK  6(6P25.1) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"AMP PEAK  6(6P25.1) WILD-TYPE"   "AMP PEAK  6(6P25.1) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "AMP PEAK  6(6P25.1) MUTATED"   "AMP PEAK  6(6P25.1) MUTATED" 
[1] "hr=" "1.4"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(6P25.1) MUTATED     23   38
  AMP PEAK  6(6P25.1) WILD-TYPE   12   39
        clus
vv       AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE
  FEMALE                          23                            12
  MALE                            38                            39
                               vv
clus                            M0 M1 M1B M1C
  AMP PEAK  6(6P25.1) MUTATED   52  1   1   1
  AMP PEAK  6(6P25.1) WILD-TYPE 46  0   1   0
D6V4, multiclass
     clus
vv    AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE
  M0                           52                            46
  M1                            1                             0
  M1B                           1                             1
  M1C                           1                             0
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  6(6P25.1) MUTATED   34  0   3   4  0   3   4   1  7  0
  AMP PEAK  6(6P25.1) WILD-TYPE 27  1   0   6  1   0   4   0  6  2
D6V5, multiclass
D6V6, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  6(6P25.1) MUTATED             0       9        3        6        7
  AMP PEAK  6(6P25.1) WILD-TYPE           1       6        4        5        6
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  6(6P25.1) MUTATED           3         3         2         1
  AMP PEAK  6(6P25.1) WILD-TYPE         2         2         0         3
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  6(6P25.1) MUTATED            3          5          9        2
  AMP PEAK  6(6P25.1) WILD-TYPE          0          5          9        1
D6V7, multiclass

Clustering(7) Variable = Amp Peak  7(6q12) mutation analysis
D7V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  7(6Q12) MUTATED   13 10
  AMP PEAK  7(6Q12) WILD-TYPE 42 45
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         23                          87 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         10                          45 
$`AMP PEAK  7(6Q12) MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D9-A1JW TCGA-DA-A1HV TCGA-EE-A181 
      121.22        65.49        23.77         2.70        48.89        33.73 
TCGA-EE-A183 TCGA-EE-A2GB TCGA-EE-A2GH TCGA-EE-A2GT TCGA-EE-A2ME TCGA-EE-A2MI 
       26.86        47.54       182.01        19.56       103.27       204.62 
TCGA-EE-A2MN TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AD TCGA-EE-A3AE 
       47.54       136.44        41.59         4.24         3.68        26.73 
TCGA-ER-A19M TCGA-ER-A19N TCGA-FS-A1ZW TCGA-GN-A267 TCGA-GN-A268 
       61.05        44.05        49.48        64.41        62.76 

$`AMP PEAK  7(6Q12) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JD 
       16.57       112.54        28.08        31.59        43.40        11.87 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JX 
       12.10        58.03        60.23        24.53       148.31         6.38 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1IB 
       11.34         3.22        36.03       117.17       176.55        23.44 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A185 
       10.49       215.44        15.68        29.82         8.65         4.93 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       78.87        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X 
       18.58        56.42        14.47        55.89       345.96        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GE 
       46.82        78.94        24.43        58.75        43.23       135.91 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GU 
       22.55        89.33        54.71        55.00        55.59        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
      103.17        16.96        96.23       144.76       203.01       167.87 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AF 
      248.61        43.23       103.56       122.73        25.84        13.81 
TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A1A1 TCGA-FR-A3YN 
      138.77        26.37         6.41       131.08        79.99        80.48 
TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZG 
      160.60       216.92        28.08         7.76        53.52         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZP TCGA-FS-A1ZS TCGA-FS-A4F9 TCGA-FW-A3R5 
       32.71        47.38        74.73       148.77        12.43        22.98 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A26D 
      117.93        84.72        39.58 

  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                       2.70                        2.56 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                     204.62                      345.96 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                      47.54                       46.82 
[1] "2.7 - 204.6 (47.5)" "2.6 - 346.0 (46.8)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
[1] "hr=" "1.2"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  7(6Q12) MUTATED      5   18
  AMP PEAK  7(6Q12) WILD-TYPE   30   59
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  FEMALE                         5                          30
  MALE                          18                          59
                             vv
clus                          M0 M1 M1B M1C
  AMP PEAK  7(6Q12) MUTATED   20  0   0   0
  AMP PEAK  7(6Q12) WILD-TYPE 78  1   2   1
D7V4, multiclass
     clus
vv    AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  M0                         20                          78
  M1                          0                           1
  M1B                         0                           2
  M1C                         0                           1
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  7(6Q12) MUTATED   14  0   3   0  0   1   1   0  1  0
  AMP PEAK  7(6Q12) WILD-TYPE 47  1   0  10  1   2   7   1 12  2
D7V5, multiclass
D7V6, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  7(6Q12) MUTATED             0       4        1        4        2
  AMP PEAK  7(6Q12) WILD-TYPE           1      11        6        7       11
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  7(6Q12) MUTATED           1         2         0         0
  AMP PEAK  7(6Q12) WILD-TYPE         4         3         2         4
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  7(6Q12) MUTATED            2          2          1        0
  AMP PEAK  7(6Q12) WILD-TYPE          1          8         17        3
D7V7, multiclass

Clustering(8) Variable = Amp Peak  8(7p22.1) mutation analysis
D8V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  8(7P22.1) MUTATED   28 31
  AMP PEAK  8(7P22.1) WILD-TYPE 27 24
  AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE 
                           59                            51 
  AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE 
                           31                            24 
$`AMP PEAK  8(7P22.1) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q9 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D9-A148 
       16.57       112.54        31.59        23.77        11.87       148.31 
TCGA-D9-A1JX TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I2 
        6.38         3.22        48.89        36.03       117.17       176.55 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L 
        8.65        33.73        47.84        13.97        39.62         2.56 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29T TCGA-EE-A2A0 TCGA-EE-A2A6 TCGA-EE-A2GB 
       18.58        56.42       345.96        46.82        58.75        47.54 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2M5 
      135.91       182.01        22.55        89.33        55.00        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN 
      129.24        28.80        96.23       144.76       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A3AA TCGA-EE-A3AB 
      248.61        43.23       103.56       136.44         4.24       122.73 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19J TCGA-ER-A19M 
        3.68        26.73        13.81       138.77         6.41        61.05 
TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZD 
       80.48       160.60       216.92        28.08         7.76        53.52 
TCGA-FS-A1ZH TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       32.71       117.93        64.41        62.76        39.58 

$`AMP PEAK  8(7P22.1) WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2JK TCGA-D3-A3C6 
      121.22        28.08        43.40        65.49        12.10        58.03 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-DA-A1IB TCGA-DA-A3F3 
       60.23        24.53         2.70        11.34        23.44        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F 
      215.44        15.68        29.82        26.86         4.93        78.87 
TCGA-EE-A29H TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 
       32.19        14.47        55.89        17.92        78.94        24.43 
TCGA-EE-A2GC TCGA-EE-A2GK TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M8 
       43.23        54.71        55.59        19.56        67.13        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2ML TCGA-EE-A2MT TCGA-EE-A3AC TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19N 
      203.01        41.59        25.84        26.37       131.08        44.05 
TCGA-ER-A1A1 TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZP TCGA-FS-A1ZS TCGA-FS-A1ZW 
       79.99         9.70        47.38        74.73       148.77        49.48 
TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A265 
       12.43        22.98        84.72 

  AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE 
                         2.56                          2.70 
  AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE 
                       345.96                        215.44 
  AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE 
                        47.84                         43.40 
[1] "2.6 - 346.0 (47.8)" "2.7 - 215.4 (43.4)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
  "AMP PEAK  8(7P22.1) MUTATED" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"AMP PEAK  8(7P22.1) WILD-TYPE" "AMP PEAK  8(7P22.1) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"AMP PEAK  8(7P22.1) WILD-TYPE"   "AMP PEAK  8(7P22.1) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "AMP PEAK  8(7P22.1) MUTATED"   "AMP PEAK  8(7P22.1) MUTATED" 
[1] "hr=" "1.1"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(7P22.1) MUTATED     19   41
  AMP PEAK  8(7P22.1) WILD-TYPE   16   36
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  FEMALE                          19                            16
  MALE                            41                            36
                               vv
clus                            M0 M1 M1B M1C
  AMP PEAK  8(7P22.1) MUTATED   51  1   1   1
  AMP PEAK  8(7P22.1) WILD-TYPE 47  0   1   0
D8V4, multiclass
     clus
vv    AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  M0                           51                            47
  M1                            1                             0
  M1B                           1                             1
  M1C                           1                             0
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  8(7P22.1) MUTATED   33  0   2   7  0   2   2   1  6  2
  AMP PEAK  8(7P22.1) WILD-TYPE 28  1   1   3  1   1   6   0  7  0
D8V5, multiclass
D8V6, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  8(7P22.1) MUTATED             1       9        4        4        7
  AMP PEAK  8(7P22.1) WILD-TYPE           0       6        3        7        6
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  8(7P22.1) MUTATED           3         2         2         0
  AMP PEAK  8(7P22.1) WILD-TYPE         2         3         0         4
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  8(7P22.1) MUTATED            3          6          8        2
  AMP PEAK  8(7P22.1) WILD-TYPE          0          4         10        1
D8V7, multiclass

Clustering(9) Variable = Amp Peak  9(7q34) mutation analysis
D9V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  9(7Q34) MUTATED   32 29
  AMP PEAK  9(7Q34) WILD-TYPE 23 26
  AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE 
                         61                          49 
  AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE 
                         29                          26 
$`AMP PEAK  9(7Q34) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q9 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A3CE 
       16.57       112.54        31.59        23.77        11.87        60.23 
TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31         2.70         6.38         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A183 
      117.17       176.55       215.44        15.68        33.73        26.86 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
       47.84        39.62        32.19         2.56        18.58        56.42 
TCGA-EE-A29T TCGA-EE-A2A0 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GE TCGA-EE-A2GH 
      345.96        46.82        58.75        47.54       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       22.55        55.00        19.56       129.24        28.80        19.76 
TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
       16.96        96.23       144.76        43.23       103.56       136.44 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19J 
        4.24       122.73        26.73        13.81       138.77         6.41 
TCGA-ER-A19M TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZG 
       61.05        80.48       160.60         7.76        53.52         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZS TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       32.71       148.77       117.93        84.72        64.41        62.76 
TCGA-GN-A26D 
       39.58 

$`AMP PEAK  9(7Q34) WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2JK TCGA-D3-A3C6 
      121.22        28.08        43.40        65.49        12.10        58.03 
TCGA-D3-A3CF TCGA-D9-A3Z1 TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-EE-A17X TCGA-EE-A17Z 
       24.53        11.34        23.44        10.49        29.82         8.65 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X 
        4.93        78.87        13.97        14.47        55.89        17.92 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2GC TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GS 
       78.94        24.43        43.23        89.33        54.71        55.59 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       67.13        21.67        61.51        47.28       103.27       103.17 
TCGA-EE-A2MI TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MT 
      204.62       203.01       167.87        47.54       248.61        41.59 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       25.84         3.68        26.37       131.08        44.05        79.99 
TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1ZJ TCGA-FS-A1ZP TCGA-FS-A1ZW TCGA-FS-A4F9 
      216.92        28.08        47.38        74.73        49.48        12.43 
TCGA-FW-A3R5 
       22.98 

  AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE 
                       2.56                        3.68 
  AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE 
                     345.96                      248.61 
  AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE 
                      47.54                       47.28 
[1] "2.6 - 346.0 (47.5)" "3.7 - 248.6 (47.3)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "AMP PEAK  9(7Q34) MUTATED" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
"AMP PEAK  9(7Q34) WILD-TYPE" "AMP PEAK  9(7Q34) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
"AMP PEAK  9(7Q34) WILD-TYPE"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "AMP PEAK  9(7Q34) MUTATED"   "AMP PEAK  9(7Q34) MUTATED" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(7Q34) MUTATED     21   41
  AMP PEAK  9(7Q34) WILD-TYPE   14   36
        clus
vv       AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE
  FEMALE                        21                          14
  MALE                          41                          36
                             vv
clus                          M0 M1 M1B M1C
  AMP PEAK  9(7Q34) MUTATED   53  1   1   1
  AMP PEAK  9(7Q34) WILD-TYPE 45  0   1   0
D9V4, multiclass
     clus
vv    AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE
  M0                         53                          45
  M1                          1                           0
  M1B                         1                           1
  M1C                         1                           0
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK  9(7Q34) MUTATED   30  1   2   7  0   3   4   1  7  2
  AMP PEAK  9(7Q34) WILD-TYPE 31  0   1   3  1   0   4   0  6  0
D9V5, multiclass
D9V6, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK  9(7Q34) MUTATED             1       5        4        3        9
  AMP PEAK  9(7Q34) WILD-TYPE           0      10        3        8        4
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK  9(7Q34) MUTATED           4         1         2         2
  AMP PEAK  9(7Q34) WILD-TYPE         1         4         0         2
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK  9(7Q34) MUTATED            3          7          9        2
  AMP PEAK  9(7Q34) WILD-TYPE          0          3          9        1
D9V7, multiclass

Clustering(10) Variable = Amp Peak 10(8q11.21) mutation analysis
D10V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 10(8Q11.21) MUTATED   19 21
  AMP PEAK 10(8Q11.21) WILD-TYPE 36 34
  AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE 
                            40                             70 
  AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE 
                            21                             34 
$`AMP PEAK 10(8Q11.21) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A2J6 TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-DA-A1HW TCGA-DA-A1HY 
       16.57        43.40        58.03        60.23        36.03       117.17 
TCGA-DA-A1I2 TCGA-DA-A3F5 TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A29C TCGA-EE-A29E 
      176.55       215.44         8.65        33.73        47.84        39.62 
TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GL TCGA-EE-A2M6 
       14.47       345.96       135.91       182.01        55.00       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MH TCGA-EE-A2MN TCGA-EE-A2MR TCGA-EE-A3AB 
       28.80        19.76        16.96        47.54       103.56       122.73 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.68        26.73         6.41       131.08        61.05        44.05 
TCGA-FR-A44A TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZP TCGA-FS-A1ZS 
      160.60        28.08         7.76        53.52        74.73       148.77 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26D 
      117.93        84.72        64.41        39.58 

$`AMP PEAK 10(8Q11.21) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 
      112.54       121.22        28.08        31.59        65.49        23.77 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX 
       11.87        12.10        24.53       148.31         2.70         6.38 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F8 
       11.34         3.22        48.89        23.44        10.49        15.68 
TCGA-EE-A17X TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29H 
       29.82        26.86         4.93        78.87        13.97        32.19 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 
        2.56        18.58        56.42        55.89        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GI 
       78.94        24.43        58.75        47.54        43.23        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       89.33        54.71        55.59        19.56        67.13        21.67 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MJ 
       61.51        47.28       103.27       103.17       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS 
      144.76       203.01       167.87       248.61        43.23       136.44 
TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19F 
       41.59         4.24        25.84        13.81       138.77        26.37 
TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       79.99        80.48       216.92         9.70        32.71        47.38 
TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A268 
       49.48        12.43        22.98        62.76 

  AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE 
                          3.68                           2.56 
  AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE 
                        345.96                         248.61 
  AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE 
                         54.26                          43.23 
[1] "3.7 - 346.0 (54.3)" "2.6 - 248.6 (43.2)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 10(8Q11.21) MUTATED" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 10(8Q11.21) WILD-TYPE" "AMP PEAK 10(8Q11.21) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK 10(8Q11.21) MUTATED"   "AMP PEAK 10(8Q11.21) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK 10(8Q11.21) WILD-TYPE"   "AMP PEAK 10(8Q11.21) MUTATED" 
[1] "hr=" "1.2"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8Q11.21) MUTATED     13   28
  AMP PEAK 10(8Q11.21) WILD-TYPE   22   49
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  FEMALE                           13                             22
  MALE                             28                             49
                                vv
clus                             M0 M1 M1B M1C
  AMP PEAK 10(8Q11.21) MUTATED   33  1   0   0
  AMP PEAK 10(8Q11.21) WILD-TYPE 65  0   2   1
D10V4, multiclass
     clus
vv    AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  M0                            33                             65
  M1                             1                              0
  M1B                            0                              2
  M1C                            0                              1
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 10(8Q11.21) MUTATED   21  1   1   5  0   0   2   0  4  1
  AMP PEAK 10(8Q11.21) WILD-TYPE 40  0   2   5  1   3   6   1  9  1
D10V5, multiclass
D10V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 10(8Q11.21) MUTATED             0       6        1        3        6
  AMP PEAK 10(8Q11.21) WILD-TYPE           1       9        6        8        7
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 10(8Q11.21) MUTATED           2         2         1         3
  AMP PEAK 10(8Q11.21) WILD-TYPE         3         3         1         1
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 10(8Q11.21) MUTATED            1          2          6        1
  AMP PEAK 10(8Q11.21) WILD-TYPE          2          8         12        2
D10V7, multiclass

Clustering(11) Variable = Amp Peak 11(8q24.21) mutation analysis
D11V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 11(8Q24.21) MUTATED   23 25
  AMP PEAK 11(8Q24.21) WILD-TYPE 32 30
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            48                             62 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            25                             30 
$`AMP PEAK 11(8Q24.21) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D9-A1JW 
       16.57        31.59        43.40        58.03        60.23         2.70 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17Z 
       36.03       117.17       176.55        10.49       215.44         8.65 
TCGA-EE-A181 TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29R 
       33.73        47.84        39.62        32.19         2.56        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GL TCGA-EE-A2GS 
       55.89       345.96       135.91       182.01        55.00        55.59 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MN 
      129.24        28.80        19.76        16.96        96.23        47.54 
TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE TCGA-ER-A19J 
      248.61       103.56       122.73         3.68        26.73         6.41 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z4 
      131.08        61.05        44.05       160.60       216.92        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZP TCGA-FS-A1ZS TCGA-GN-A267 TCGA-GN-A26D 
        7.76        53.52        74.73       148.77        64.41        39.58 

$`AMP PEAK 11(8Q24.21) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD 
      112.54       121.22        28.08        65.49        23.77        11.87 
TCGA-D3-A2JK TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       12.10        24.53       148.31         6.38        11.34         3.22 
TCGA-DA-A1HV TCGA-DA-A1IB TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A183 TCGA-EE-A185 
       48.89        23.44        15.68        29.82        26.86         4.93 
TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29X TCGA-EE-A2A0 
       78.87        13.97        18.58        56.42        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GI 
       78.94        24.43        58.75        47.54        43.23        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2MC 
       89.33        54.71        19.56        67.13        21.67        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML 
       47.28       103.27       103.17       204.62       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AC 
      167.87        43.23       136.44        41.59         4.24        25.84 
TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FS-A1ZG 
       13.81       138.77        26.37        79.99        80.48         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A264 
       32.71        47.38        49.48        12.43        22.98       117.93 
TCGA-GN-A265 TCGA-GN-A268 
       84.72        62.76 

  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                          2.56                           3.22 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                        345.96                         204.62 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                        50.680                         45.025 
[1] "2.6 - 346.0 (50.7)" "3.2 - 204.6 (45.0)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
[1] "hr=" "1.2"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8Q24.21) MUTATED     16   34
  AMP PEAK 11(8Q24.21) WILD-TYPE   19   43
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  FEMALE                           16                             19
  MALE                             34                             43
                                vv
clus                             M0 M1 M1B M1C
  AMP PEAK 11(8Q24.21) MUTATED   44  1   0   0
  AMP PEAK 11(8Q24.21) WILD-TYPE 54  0   2   1
D11V4, multiclass
     clus
vv    AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  M0                            44                             54
  M1                             1                              0
  M1B                            0                              2
  M1C                            0                              1
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 11(8Q24.21) MUTATED   27  1   1   6  0   2   3   0  5  1
  AMP PEAK 11(8Q24.21) WILD-TYPE 34  0   2   4  1   1   5   1  8  1
D11V5, multiclass
D11V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 11(8Q24.21) MUTATED             0       7        2        5        7
  AMP PEAK 11(8Q24.21) WILD-TYPE           1       8        5        6        6
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 11(8Q24.21) MUTATED           3         2         1         3
  AMP PEAK 11(8Q24.21) WILD-TYPE         2         3         1         1
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 11(8Q24.21) MUTATED            1          5          7        1
  AMP PEAK 11(8Q24.21) WILD-TYPE          2          5         11        2
D11V7, multiclass

Clustering(12) Variable = Amp Peak 12(9p24.1) mutation analysis
D12V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 12(9P24.1) MUTATED    0  5
  AMP PEAK 12(9P24.1) WILD-TYPE 55 50
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                            5                           105 
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                            5                            50 
$`AMP PEAK 12(9P24.1) MUTATED`
TCGA-D3-A1Q9 TCGA-DA-A3F3 TCGA-EE-A2M5 TCGA-ER-A19M TCGA-FS-A1ZJ 
       31.59        10.49        21.67        61.05        47.38 

$`AMP PEAK 12(9P24.1) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 
       16.57       112.54       121.22        28.08        43.40        65.49 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF 
       23.77        11.87        12.10        58.03        60.23        24.53 
TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
      148.31         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F5 TCGA-DA-A3F8 
       36.03       117.17       176.55        23.44       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F 
       29.82         8.65        33.73        26.86         4.93        78.87 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
       47.84        13.97        39.62        32.19         2.56        18.58 
TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 
       56.42        14.47        55.89       345.96        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE 
       78.94        24.43        58.75        47.54        43.23       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS 
      182.01        22.55        89.33        54.71        55.00        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       19.56        67.13       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      103.56       136.44        41.59         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J 
        3.68        26.73        13.81       138.77        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW 
      131.08        44.05        79.99        80.48       160.60       216.92 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZP 
       28.08         7.76        53.52         9.70        32.71        74.73 
TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A265 
      148.77        49.48        12.43        22.98       117.93        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       64.41        62.76        39.58 

  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                        10.49                          2.56 
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                        61.05                        345.96 
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                        31.59                         47.54 
[1] "10.5 - 61.0 (31.6)" "2.6 - 346.0 (47.5)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
[1] "hr=" "3.6"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(9P24.1) MUTATED      1    4
  AMP PEAK 12(9P24.1) WILD-TYPE   34   73
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  FEMALE                           1                            34
  MALE                             4                            73
                               vv
clus                            M0 M1 M1B M1C
  AMP PEAK 12(9P24.1) MUTATED    5  0   0   0
  AMP PEAK 12(9P24.1) WILD-TYPE 93  1   2   1
D12V4, multiclass
     clus
vv    AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  M0                            5                            93
  M1                            0                             1
  M1B                           0                             2
  M1C                           0                             1
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 12(9P24.1) MUTATED    3  0   0   0  0   1   1   0  0  0
  AMP PEAK 12(9P24.1) WILD-TYPE 58  1   3  10  1   2   7   1 13  2
D12V5, multiclass
D12V6, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 12(9P24.1) MUTATED             0       2        0        1        0
  AMP PEAK 12(9P24.1) WILD-TYPE           1      13        7       10       13
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 12(9P24.1) MUTATED           0         0         0         0
  AMP PEAK 12(9P24.1) WILD-TYPE         5         5         2         4
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 12(9P24.1) MUTATED            0          2          0        0
  AMP PEAK 12(9P24.1) WILD-TYPE          3          8         18        3
D12V7, multiclass

Clustering(13) Variable = Amp Peak 13(11q13.3) mutation analysis
D13V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 13(11Q13.3) MUTATED    7 12
  AMP PEAK 13(11Q13.3) WILD-TYPE 48 43
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                            19                             91 
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                            12                             43 
$`AMP PEAK 13(11Q13.3) MUTATED`
TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A3Z3 TCGA-DA-A3F3 
       31.59        43.40        60.23        24.53         3.22        10.49 
TCGA-EE-A20F TCGA-EE-A2GB TCGA-EE-A2GH TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2MM 
       78.87        47.54       182.01        21.67        61.51       167.87 
TCGA-ER-A19M TCGA-ER-A19N TCGA-FS-A1YW TCGA-FS-A1ZD TCGA-FS-A1ZS TCGA-GN-A268 
       61.05        44.05       216.92        53.52       148.77        62.76 
TCGA-GN-A26D 
       39.58 

$`AMP PEAK 13(11Q13.3) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 
       16.57       112.54       121.22        28.08        65.49        23.77 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX 
       11.87        12.10        58.03       148.31         2.70         6.38 
TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1IB 
       11.34        48.89        36.03       117.17       176.55        23.44 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
      215.44        15.68        29.82         8.65        33.73        26.86 
TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        4.93        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X 
       18.58        56.42        14.47        55.89       345.96        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GE 
       46.82        78.94        24.43        58.75        43.23       135.91 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GT 
       22.55        89.33        54.71        55.00        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2ME 
       67.13       129.24        28.80        19.76        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A1A1 TCGA-FR-A3YN 
      138.77        26.37         6.41       131.08        79.99        80.48 
TCGA-FR-A44A TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
      160.60        28.08         7.76         9.70        32.71        47.38 
TCGA-FS-A1ZP TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A265 
       74.73        49.48        12.43        22.98       117.93        84.72 
TCGA-GN-A267 
       64.41 

  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                          3.22                           2.56 
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                        216.92                         345.96 
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                         53.52                          46.82 
[1] "3.2 - 216.9 (53.5)" "2.6 - 346.0 (46.8)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 13(11Q13.3) MUTATED"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 13(11Q13.3) MUTATED"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "AMP PEAK 13(11Q13.3) MUTATED"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 13(11Q13.3) MUTATED"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 13(11Q13.3) MUTATED"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "AMP PEAK 13(11Q13.3) MUTATED"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 13(11Q13.3) MUTATED"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 13(11Q13.3) MUTATED"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "AMP PEAK 13(11Q13.3) MUTATED"   "AMP PEAK 13(11Q13.3) MUTATED" 
[1] "hr=" "1.1"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(11Q13.3) MUTATED      5   14
  AMP PEAK 13(11Q13.3) WILD-TYPE   30   63
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  FEMALE                            5                             30
  MALE                             14                             63
                                vv
clus                             M0 M1 M1B M1C
  AMP PEAK 13(11Q13.3) MUTATED   17  0   0   0
  AMP PEAK 13(11Q13.3) WILD-TYPE 81  1   2   1
D13V4, multiclass
     clus
vv    AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  M0                            17                             81
  M1                             0                              1
  M1B                            0                              2
  M1C                            0                              1
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 13(11Q13.3) MUTATED   12  0   1   2  0   1   1   0  1  0
  AMP PEAK 13(11Q13.3) WILD-TYPE 49  1   2   8  1   2   7   1 12  2
D13V5, multiclass
D13V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 13(11Q13.3) MUTATED             0       4        0        2        2
  AMP PEAK 13(11Q13.3) WILD-TYPE           1      11        7        9       11
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 13(11Q13.3) MUTATED           1         2         1         1
  AMP PEAK 13(11Q13.3) WILD-TYPE         4         3         1         3
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 13(11Q13.3) MUTATED            1          3          1        0
  AMP PEAK 13(11Q13.3) WILD-TYPE          2          7         17        3
D13V7, multiclass

Clustering(14) Variable = Amp Peak 14(12q14.1) mutation analysis
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(12Q14.1) MUTATED    7 13
  AMP PEAK 14(12Q14.1) WILD-TYPE 48 42
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                            20                             90 
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                            13                             42 
$`AMP PEAK 14(12Q14.1) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-DA-A1HV 
       16.57        31.59        43.40        58.03        24.53        48.89 
TCGA-DA-A1HW TCGA-DA-A3F5 TCGA-EE-A17Z TCGA-EE-A29D TCGA-EE-A2A6 TCGA-EE-A2GB 
       36.03       215.44         8.65        13.97        58.75        47.54 
TCGA-EE-A2GH TCGA-EE-A2M5 TCGA-EE-A2MS TCGA-ER-A19M TCGA-GN-A264 TCGA-GN-A267 
      182.01        21.67       136.44        61.05       117.93        64.41 
TCGA-GN-A268 TCGA-GN-A26D 
       62.76        39.58 

$`AMP PEAK 14(12Q14.1) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD 
      112.54       121.22        28.08        65.49        23.77        11.87 
TCGA-D3-A2JK TCGA-D3-A3CE TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 
       12.10        60.23       148.31         2.70         6.38        11.34 
TCGA-D9-A3Z3 TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F8 
        3.22       117.17       176.55        23.44        10.49        15.68 
TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C 
       29.82        33.73        26.86         4.93        78.87        47.84 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R 
       39.62        32.19         2.56        18.58        56.42        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
       55.89       345.96        17.92        46.82        78.94        24.43 
TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
       43.23       135.91        22.55        89.33        54.71        55.00 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       55.59        19.56        67.13       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
       43.23       103.56        41.59         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J 
        3.68        26.73        13.81       138.77        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW 
      131.08        44.05        79.99        80.48       160.60       216.92 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       28.08         7.76        53.52         9.70        32.71        47.38 
TCGA-FS-A1ZP TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A265 
       74.73       148.77        49.48        12.43        22.98        84.72 

  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                          8.65                           2.56 
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                        215.44                         345.96 
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                        48.215                         47.050 
[1] "8.7 - 215.4 (48.2)" "2.6 - 346.0 (47.0)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 14(12Q14.1) MUTATED"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK 14(12Q14.1) MUTATED"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 14(12Q14.1) WILD-TYPE"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 14(12Q14.1) WILD-TYPE"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
  "AMP PEAK 14(12Q14.1) MUTATED"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 14(12Q14.1) WILD-TYPE"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"AMP PEAK 14(12Q14.1) WILD-TYPE"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "AMP PEAK 14(12Q14.1) MUTATED"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 14(12Q14.1) MUTATED"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK 14(12Q14.1) MUTATED"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 14(12Q14.1) WILD-TYPE"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 14(12Q14.1) WILD-TYPE"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
  "AMP PEAK 14(12Q14.1) MUTATED"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 14(12Q14.1) WILD-TYPE"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"AMP PEAK 14(12Q14.1) WILD-TYPE"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "AMP PEAK 14(12Q14.1) MUTATED"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 14(12Q14.1) MUTATED"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK 14(12Q14.1) MUTATED"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 14(12Q14.1) WILD-TYPE"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 14(12Q14.1) WILD-TYPE"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
  "AMP PEAK 14(12Q14.1) MUTATED"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 14(12Q14.1) MUTATED" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 14(12Q14.1) WILD-TYPE"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"AMP PEAK 14(12Q14.1) WILD-TYPE"   "AMP PEAK 14(12Q14.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "AMP PEAK 14(12Q14.1) MUTATED"   "AMP PEAK 14(12Q14.1) MUTATED" 
[1] "hr=" "1.4"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(12Q14.1) MUTATED      7   13
  AMP PEAK 14(12Q14.1) WILD-TYPE   28   64
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  FEMALE                            7                             28
  MALE                             13                             64
                                vv
clus                             M0 M1 M1B M1C
  AMP PEAK 14(12Q14.1) MUTATED   18  0   0   0
  AMP PEAK 14(12Q14.1) WILD-TYPE 80  1   2   1
D14V4, multiclass
     clus
vv    AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  M0                            18                             80
  M1                             0                              1
  M1B                            0                              2
  M1C                            0                              1
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 14(12Q14.1) MUTATED   10  0   2   2  0   1   1   0  3  0
  AMP PEAK 14(12Q14.1) WILD-TYPE 51  1   1   8  1   2   7   1 10  2
D14V5, multiclass
D14V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 14(12Q14.1) MUTATED             0       2        1        2        1
  AMP PEAK 14(12Q14.1) WILD-TYPE           1      13        6        9       12
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 14(12Q14.1) MUTATED           0         3         1         0
  AMP PEAK 14(12Q14.1) WILD-TYPE         5         2         1         4
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 14(12Q14.1) MUTATED            2          3          4        0
  AMP PEAK 14(12Q14.1) WILD-TYPE          1          7         14        3
D14V7, multiclass

Clustering(15) Variable = Amp Peak 15(15q26.2) mutation analysis
D15V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 15(15Q26.2) MUTATED   20 23
  AMP PEAK 15(15Q26.2) WILD-TYPE 35 32
  AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE 
                            43                             67 
  AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE 
                            23                             32 
$`AMP PEAK 15(15Q26.2) MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q9 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A3CE TCGA-D9-A148 
      112.54        31.59        23.77        11.87        60.23       148.31 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A183 
        3.22        48.89        36.03        10.49       215.44        26.86 
TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2GH 
       78.87        13.97       345.96        17.92        78.94       182.01 
TCGA-EE-A2GI TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MD TCGA-EE-A2MJ 
       22.55        67.13       129.24        28.80        47.28        96.23 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A3AA 
       47.54       248.61        43.23       103.56       136.44         4.24 
TCGA-EE-A3AB TCGA-EE-A3AE TCGA-EE-A3AF TCGA-ER-A19M TCGA-FR-A44A TCGA-FS-A1Z7 
      122.73        26.73        13.81        61.05       160.60         7.76 
TCGA-FS-A1ZD TCGA-FS-A1ZJ TCGA-FS-A1ZP TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A265 
       53.52        47.38        74.73        22.98       117.93        84.72 
TCGA-GN-A267 
       64.41 

$`AMP PEAK 15(15Q26.2) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2JK 
       16.57       121.22        28.08        43.40        65.49        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HY 
       58.03        24.53         2.70         6.38        11.34       117.17 
TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
      176.55        23.44        15.68        29.82         8.65        33.73 
TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
        4.93        47.84        39.62        32.19         2.56        18.58 
TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A6 
       56.42        14.47        55.89        46.82        24.43        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
       47.54        43.23       135.91        89.33        54.71        55.00 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME 
       55.59        19.56        21.67        19.76        61.51       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
      103.17        16.96       204.62       144.76       203.01       167.87 
TCGA-EE-A2MT TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J 
       41.59        25.84         3.68       138.77        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1Z4 
      131.08        44.05        79.99        80.48       216.92        28.08 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-GN-A268 
        9.70        32.71       148.77        49.48        12.43        62.76 
TCGA-GN-A26D 
       39.58 

  AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE 
                          3.22                           2.56 
  AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE 
                        345.96                         216.92 
  AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE 
                         53.52                          43.23 
[1] "3.2 - 346.0 (53.5)" "2.6 - 216.9 (43.2)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 15(15Q26.2) WILD-TYPE"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "AMP PEAK 15(15Q26.2) MUTATED" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK 15(15Q26.2) MUTATED"   "AMP PEAK 15(15Q26.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK 15(15Q26.2) WILD-TYPE" "AMP PEAK 15(15Q26.2) WILD-TYPE" 
[1] "hr=" "1.1"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(15Q26.2) MUTATED     12   31
  AMP PEAK 15(15Q26.2) WILD-TYPE   23   46
        clus
vv       AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE
  FEMALE                           12                             23
  MALE                             31                             46
                                vv
clus                             M0 M1 M1B M1C
  AMP PEAK 15(15Q26.2) MUTATED   37  0   1   0
  AMP PEAK 15(15Q26.2) WILD-TYPE 61  1   1   1
D15V4, multiclass
     clus
vv    AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE
  M0                            37                             61
  M1                             0                              1
  M1B                            1                              1
  M1C                            0                              1
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 15(15Q26.2) MUTATED   22  0   1   6  1   2   2   0  3  1
  AMP PEAK 15(15Q26.2) WILD-TYPE 39  1   2   4  0   1   6   1 10  1
D15V5, multiclass
D15V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 15(15Q26.2) MUTATED             1       7        3        3        7
  AMP PEAK 15(15Q26.2) WILD-TYPE           0       8        4        8        6
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 15(15Q26.2) MUTATED           1         0         0         2
  AMP PEAK 15(15Q26.2) WILD-TYPE         4         5         2         2
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 15(15Q26.2) MUTATED            2          5          5        0
  AMP PEAK 15(15Q26.2) WILD-TYPE          1          5         13        3
D15V7, multiclass

Clustering(16) Variable = Amp Peak 16(17q25.3) mutation analysis
D16V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 16(17Q25.3) MUTATED   24 20
  AMP PEAK 16(17Q25.3) WILD-TYPE 31 35
  AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE 
                            44                             66 
  AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE 
                            20                             35 
$`AMP PEAK 16(17Q25.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q9 TCGA-D3-A2JD TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A148 
       16.57        31.59        11.87        60.23        24.53       148.31 
TCGA-D9-A1JW TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A181 
        2.70        48.89       117.17        10.49       215.44        33.73 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
        4.93        78.87        13.97        32.19         2.56        18.58 
TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GH 
       56.42        14.47        58.75        47.54        43.23       182.01 
TCGA-EE-A2GI TCGA-EE-A2M7 TCGA-EE-A2MD TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MN 
       22.55        28.80        47.28        16.96       204.62        47.54 
TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AC TCGA-EE-A3AE 
      248.61       103.56       136.44        41.59        25.84        26.73 
TCGA-ER-A19F TCGA-ER-A19N TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1ZD TCGA-GN-A265 
       26.37        44.05        80.48       216.92        53.52        84.72 
TCGA-GN-A268 TCGA-GN-A26D 
       62.76        39.58 

$`AMP PEAK 16(17Q25.3) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 
      112.54       121.22        28.08        43.40        65.49        23.77 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW 
       12.10        58.03         6.38        11.34         3.22        36.03 
TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 
      176.55        23.44        15.68        29.82         8.65        26.86 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 
       47.84        39.62        55.89       345.96        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2GE TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
       78.94        24.43       135.91        89.33        54.71        55.00 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M8 
       55.59        19.56        67.13        21.67       129.24        19.76 
TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
       61.51       103.27       103.17        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MQ TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AF 
      167.87        43.23         4.24       122.73         3.68        13.81 
TCGA-EE-A3AH TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-FR-A44A 
      138.77         6.41       131.08        61.05        79.99       160.60 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZP 
       28.08         7.76         9.70        32.71        47.38        74.73 
TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A267 
      148.77        49.48        12.43        22.98       117.93        64.41 

  AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE 
                          2.56                           3.22 
  AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE 
                        248.61                         345.96 
  AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE 
                         43.64                          48.66 
[1] "2.6 - 248.6 (43.6)" "3.2 - 346.0 (48.7)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"AMP PEAK 16(17Q25.3) WILD-TYPE"   "AMP PEAK 16(17Q25.3) MUTATED" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 16(17Q25.3) WILD-TYPE" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK 16(17Q25.3) MUTATED" "AMP PEAK 16(17Q25.3) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "AMP PEAK 16(17Q25.3) MUTATED"   "AMP PEAK 16(17Q25.3) MUTATED" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(17Q25.3) MUTATED     13   31
  AMP PEAK 16(17Q25.3) WILD-TYPE   22   46
        clus
vv       AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE
  FEMALE                           13                             22
  MALE                             31                             46
                                vv
clus                             M0 M1 M1B M1C
  AMP PEAK 16(17Q25.3) MUTATED   39  0   1   0
  AMP PEAK 16(17Q25.3) WILD-TYPE 59  1   1   1
D16V4, multiclass
     clus
vv    AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE
  M0                            39                             59
  M1                             0                              1
  M1B                            1                              1
  M1C                            0                              1
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 16(17Q25.3) MUTATED   25  0   1   4  0   2   2   0  7  0
  AMP PEAK 16(17Q25.3) WILD-TYPE 36  1   2   6  1   1   6   1  6  2
D16V5, multiclass
D16V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 16(17Q25.3) MUTATED             0       4        4        3        6
  AMP PEAK 16(17Q25.3) WILD-TYPE           1      11        3        8        7
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 16(17Q25.3) MUTATED           1         3         2         1
  AMP PEAK 16(17Q25.3) WILD-TYPE         4         2         0         3
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 16(17Q25.3) MUTATED            1          3          9        0
  AMP PEAK 16(17Q25.3) WILD-TYPE          2          7          9        3
D16V7, multiclass

Clustering(17) Variable = Amp Peak 17(19p13.2) mutation analysis
D17V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 17(19P13.2) MUTATED    9 10
  AMP PEAK 17(19P13.2) WILD-TYPE 46 45
  AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE 
                            19                             91 
  AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE 
                            10                             45 
$`AMP PEAK 17(19P13.2) MUTATED`
TCGA-D3-A1Q5 TCGA-DA-A3F5 TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29R 
      112.54       215.44        39.62         2.56        56.42        14.47 
TCGA-EE-A2GH TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MG TCGA-EE-A2MM TCGA-EE-A2MR 
      182.01       129.24        28.80       103.17       167.87       103.56 
TCGA-ER-A19J TCGA-FR-A3YN TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZJ TCGA-FS-A1ZS 
        6.41        80.48         7.76        53.52        47.38       148.77 
TCGA-GN-A267 
       64.41 

$`AMP PEAK 17(19P13.2) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J8 
       16.57       121.22        28.08        31.59        43.40        65.49 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF 
       23.77        11.87        12.10        58.03        60.23        24.53 
TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
      148.31         2.70         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F8 
       36.03       117.17       176.55        23.44        10.49        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F 
       29.82         8.65        33.73        26.86         4.93        78.87 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29S TCGA-EE-A29T 
       47.84        13.97        32.19        18.58        55.89       345.96 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB 
       17.92        46.82        78.94        24.43        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
       43.23       135.91        22.55        89.33        54.71        55.00 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC 
       55.59        19.56        67.13        21.67        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
       47.28       103.27        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT 
      203.01        47.54       248.61        43.23       136.44        41.59 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
      138.77        26.37       131.08        61.05        44.05        79.99 
TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZP 
      160.60       216.92        28.08         9.70        32.71        74.73 
TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A268 
       49.48        12.43        22.98       117.93        84.72        62.76 
TCGA-GN-A26D 
       39.58 

  AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE 
                          2.56                           2.70 
  AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE 
                        215.44                         345.96 
  AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE 
                         64.41                          43.40 
[1] "2.6 - 215.4 (64.4)" "2.7 - 346.0 (43.4)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "AMP PEAK 17(19P13.2) MUTATED"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "AMP PEAK 17(19P13.2) MUTATED"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "AMP PEAK 17(19P13.2) MUTATED"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 17(19P13.2) MUTATED" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"AMP PEAK 17(19P13.2) WILD-TYPE"   "AMP PEAK 17(19P13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"AMP PEAK 17(19P13.2) WILD-TYPE" "AMP PEAK 17(19P13.2) WILD-TYPE" 
[1] "hr=" "1.2"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(19P13.2) MUTATED      4   15
  AMP PEAK 17(19P13.2) WILD-TYPE   31   62
        clus
vv       AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE
  FEMALE                            4                             31
  MALE                             15                             62
                                vv
clus                             M0 M1 M1B M1C
  AMP PEAK 17(19P13.2) MUTATED   18  1   0   0
  AMP PEAK 17(19P13.2) WILD-TYPE 80  0   2   1
D17V4, multiclass
     clus
vv    AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE
  M0                            18                             80
  M1                             1                              0
  M1B                            0                              2
  M1C                            0                              1
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 17(19P13.2) MUTATED   12  0   1   3  0   0   0   0  3  0
  AMP PEAK 17(19P13.2) WILD-TYPE 49  1   2   7  1   3   8   1 10  2
D17V5, multiclass
D17V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 17(19P13.2) MUTATED             1       6        0        1        2
  AMP PEAK 17(19P13.2) WILD-TYPE           0       9        7       10       11
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 17(19P13.2) MUTATED           1         0         1         0
  AMP PEAK 17(19P13.2) WILD-TYPE         4         5         1         4
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 17(19P13.2) MUTATED            1          1          4        1
  AMP PEAK 17(19P13.2) WILD-TYPE          2          9         14        2
D17V7, multiclass

Clustering(18) Variable = Amp Peak 18(22q13.2) mutation analysis
D18V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 18(22Q13.2) MUTATED   26 22
  AMP PEAK 18(22Q13.2) WILD-TYPE 29 33
  AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE 
                            48                             62 
  AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE 
                            22                             33 
$`AMP PEAK 18(22Q13.2) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q9 TCGA-D3-A3CE TCGA-D9-A148 TCGA-D9-A1JX TCGA-D9-A3Z1 
       16.57        31.59        60.23       148.31         6.38        11.34 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1IB TCGA-DA-A3F5 TCGA-EE-A17Z 
       48.89        36.03       117.17        23.44       215.44         8.65 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29X TCGA-EE-A2A2 TCGA-EE-A2A6 
        2.56        18.58        14.47        17.92        24.43        58.75 
TCGA-EE-A2GB TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2ME 
       47.54       182.01        22.55       129.24        28.80       103.27 
TCGA-EE-A2MJ TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A3AA 
       96.23        47.54        43.23       103.56       136.44         4.24 
TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE TCGA-ER-A19L TCGA-ER-A19M TCGA-FR-A3YN 
      122.73         3.68        26.73       131.08        61.05        80.48 
TCGA-FR-A44A TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZS 
      160.60         7.76        53.52         9.70        32.71       148.77 
TCGA-FS-A1ZW TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       49.48       117.93        84.72        64.41        62.76        39.58 

$`AMP PEAK 18(22Q13.2) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 
      112.54       121.22        28.08        43.40        65.49        23.77 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D9-A1JW TCGA-D9-A3Z3 
       11.87        12.10        58.03        24.53         2.70         3.22 
TCGA-DA-A1I2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A183 
      176.55        10.49        15.68        29.82        33.73        26.86 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        4.93        78.87        47.84        13.97        39.62        32.19 
TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2GC 
       56.42        55.89       345.96        46.82        78.94        43.23 
TCGA-EE-A2GE TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GT 
      135.91        89.33        54.71        55.00        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2MG 
       67.13        21.67        19.76        61.51        47.28       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MP 
       16.96       204.62       144.76       203.01       167.87       248.61 
TCGA-EE-A2MT TCGA-EE-A3AC TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J 
       41.59        25.84        13.81       138.77        26.37         6.41 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1ZJ TCGA-FS-A1ZP 
       44.05        79.99       216.92        28.08        47.38        74.73 
TCGA-FS-A4F9 TCGA-FW-A3R5 
       12.43        22.98 

  AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE 
                          2.56                           2.70 
  AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE 
                        215.44                         345.96 
  AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE 
                        48.215                         45.435 
[1] "2.6 - 215.4 (48.2)" "2.7 - 346.0 (45.4)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"AMP PEAK 18(22Q13.2) WILD-TYPE" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "AMP PEAK 18(22Q13.2) MUTATED" "AMP PEAK 18(22Q13.2) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"AMP PEAK 18(22Q13.2) WILD-TYPE"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "AMP PEAK 18(22Q13.2) MUTATED"   "AMP PEAK 18(22Q13.2) MUTATED" 
[1] "hr=" "1.1"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(22Q13.2) MUTATED     15   33
  AMP PEAK 18(22Q13.2) WILD-TYPE   20   44
        clus
vv       AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE
  FEMALE                           15                             20
  MALE                             33                             44
                                vv
clus                             M0 M1 M1B M1C
  AMP PEAK 18(22Q13.2) MUTATED   39  0   1   1
  AMP PEAK 18(22Q13.2) WILD-TYPE 59  1   1   0
D18V4, multiclass
     clus
vv    AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE
  M0                            39                             59
  M1                             0                              1
  M1B                            1                              1
  M1C                            1                              0
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AMP PEAK 18(22Q13.2) MUTATED   21  0   3   5  0   2   3   1  6  1
  AMP PEAK 18(22Q13.2) WILD-TYPE 40  1   0   5  1   1   5   0  7  1
D18V5, multiclass
D18V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  AMP PEAK 18(22Q13.2) MUTATED             0       5        3        3        5
  AMP PEAK 18(22Q13.2) WILD-TYPE           1      10        4        8        8
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  AMP PEAK 18(22Q13.2) MUTATED           1         2         1         1
  AMP PEAK 18(22Q13.2) WILD-TYPE         4         3         1         3
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  AMP PEAK 18(22Q13.2) MUTATED            3          5          9        1
  AMP PEAK 18(22Q13.2) WILD-TYPE          0          5          9        2
D18V7, multiclass

Clustering(19) Variable = Del Peak  1(1p36.31) mutation analysis
D19V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.31) MUTATED   13 13
  DEL PEAK  1(1P36.31) WILD-TYPE 42 42
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            26                             84 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            13                             42 
$`DEL PEAK  1(1P36.31) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D9-A1JX TCGA-DA-A1I2 
       16.57        12.10        58.03        60.23         6.38       176.55 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29R TCGA-EE-A2GE 
      215.44        15.68        78.87        13.97        14.47       135.91 
TCGA-EE-A2GI TCGA-EE-A2M5 TCGA-EE-A2MD TCGA-EE-A2MH TCGA-EE-A2MK TCGA-EE-A2MS 
       22.55        21.67        47.28        16.96       144.76       136.44 
TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AF TCGA-FS-A1YW TCGA-FS-A1Z7 TCGA-FS-A1ZJ 
      122.73         3.68        13.81       216.92         7.76        47.38 
TCGA-FS-A1ZW TCGA-GN-A26D 
       49.48        39.58 

$`DEL PEAK  1(1P36.31) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J8 
      112.54       121.22        28.08        31.59        43.40        65.49 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A3Z1 
       23.77        11.87        24.53       148.31         2.70        11.34 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1IB TCGA-DA-A3F3 
        3.22        48.89        36.03       117.17        23.44        10.49 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A29C 
       29.82         8.65        33.73        26.86         4.93        47.84 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S 
       39.62        32.19         2.56        18.58        56.42        55.89 
TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 
      345.96        17.92        46.82        78.94        24.43        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
       47.54        43.23       182.01        89.33        54.71        55.00 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       55.59        19.56        67.13       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML 
       61.51       103.27       103.17       204.62        96.23       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT 
      167.87        47.54       248.61        43.23       103.56        41.59 
TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J 
        4.24        25.84        26.73       138.77        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FR-A44A 
      131.08        61.05        44.05        79.99        80.48       160.60 
TCGA-FS-A1Z4 TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZP TCGA-FS-A1ZS 
       28.08        53.52         9.70        32.71        74.73       148.77 
TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       12.43        22.98       117.93        84.72        64.41        62.76 

  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                          3.68                           2.56 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                        216.92                         345.96 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                         43.43                          47.54 
[1] "3.7 - 216.9 (43.4)" "2.6 - 346.0 (47.5)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
[1] "hr=" "1"  
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.31) MUTATED     10   17
  DEL PEAK  1(1P36.31) WILD-TYPE   25   60
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  FEMALE                           10                             25
  MALE                             17                             60
                                vv
clus                             M0 M1 M1B M1C
  DEL PEAK  1(1P36.31) MUTATED   23  0   0   0
  DEL PEAK  1(1P36.31) WILD-TYPE 75  1   2   1
D19V4, multiclass
     clus
vv    DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  M0                            23                             75
  M1                             0                              1
  M1B                            0                              2
  M1C                            0                              1
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  1(1P36.31) MUTATED   12  0   1   4  0   0   4   0  2  1
  DEL PEAK  1(1P36.31) WILD-TYPE 49  1   2   6  1   3   4   1 11  1
D19V5, multiclass
D19V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  1(1P36.31) MUTATED             0       3        1        2        5
  DEL PEAK  1(1P36.31) WILD-TYPE           1      12        6        9        8
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  1(1P36.31) MUTATED           0         0         1         2
  DEL PEAK  1(1P36.31) WILD-TYPE         5         5         1         2
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  1(1P36.31) MUTATED            0          2          7        0
  DEL PEAK  1(1P36.31) WILD-TYPE          3          8         11        3
D19V7, multiclass

Clustering(20) Variable = Del Peak  2(1p21.3) mutation analysis
D20V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(1P21.3) MUTATED   16 13
  DEL PEAK  2(1P21.3) WILD-TYPE 39 42
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                           29                            81 
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                           13                            42 
$`DEL PEAK  2(1P21.3) MUTATED`
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3C6 TCGA-D3-A3CE 
       28.08        31.59        43.40        11.87        58.03        60.23 
TCGA-D9-A3Z3 TCGA-DA-A1I2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A29C TCGA-EE-A29D 
        3.22       176.55       215.44        15.68        47.84        13.97 
TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2MK TCGA-EE-A2MP 
       14.47       345.96        43.23       135.91       144.76       248.61 
TCGA-EE-A2MS TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AH TCGA-ER-A19L TCGA-ER-A19M 
      136.44       122.73         3.68       138.77       131.08        61.05 
TCGA-FS-A1Z7 TCGA-FS-A1ZJ TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-GN-A26D 
        7.76        47.38       148.77        49.48        39.58 

$`DEL PEAK  2(1P21.3) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JK 
       16.57       112.54       121.22        65.49        23.77        12.10 
TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HV 
       24.53       148.31         2.70         6.38        11.34        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-EE-A17X TCGA-EE-A17Z 
       36.03       117.17        23.44        10.49        29.82         8.65 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29E TCGA-EE-A29H 
       33.73        26.86         4.93        78.87        39.62        32.19 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 
        2.56        18.58        56.42        55.89        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GH TCGA-EE-A2GI 
       78.94        24.43        58.75        47.54       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
       89.33        54.71        55.00        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML 
      103.27       103.17        16.96       204.62        96.23       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A3AA 
      167.87        47.54        43.23       103.56        41.59         4.24 
TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AF TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19N 
       25.84        26.73        13.81        26.37         6.41        44.05 
TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1ZD 
       79.99        80.48       160.60       216.92        28.08        53.52 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZP TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A264 
        9.70        32.71        74.73        12.43        22.98       117.93 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       84.72        64.41        62.76 

  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                         3.22                          2.56 
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                       345.96                        216.92 
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                        49.48                         44.05 
[1] "3.2 - 346.0 (49.5)" "2.6 - 216.9 (44.0)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
  "DEL PEAK  2(1P21.3) MUTATED"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "DEL PEAK  2(1P21.3) MUTATED" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  2(1P21.3) WILD-TYPE" "DEL PEAK  2(1P21.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  2(1P21.3) WILD-TYPE"   "DEL PEAK  2(1P21.3) MUTATED" 
[1] "hr=" "1.6"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P21.3) MUTATED      9   21
  DEL PEAK  2(1P21.3) WILD-TYPE   26   56
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  FEMALE                           9                            26
  MALE                            21                            56
                               vv
clus                            M0 M1 M1B M1C
  DEL PEAK  2(1P21.3) MUTATED   25  0   1   0
  DEL PEAK  2(1P21.3) WILD-TYPE 73  1   1   1
D20V4, multiclass
     clus
vv    DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  M0                           25                            73
  M1                            0                             1
  M1B                           1                             1
  M1C                           0                             1
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  2(1P21.3) MUTATED   13  0   1   6  0   1   3   0  2  1
  DEL PEAK  2(1P21.3) WILD-TYPE 48  1   2   4  1   2   5   1 11  1
D20V5, multiclass
D20V6, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  2(1P21.3) MUTATED             0       3        0        3        4
  DEL PEAK  2(1P21.3) WILD-TYPE           1      12        7        8        9
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  2(1P21.3) MUTATED           0         2         1         2
  DEL PEAK  2(1P21.3) WILD-TYPE         5         3         1         2
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  2(1P21.3) MUTATED            0          4          6        1
  DEL PEAK  2(1P21.3) WILD-TYPE          3          6         12        2
D20V7, multiclass

Clustering(21) Variable = Del Peak  3(2q37.3) mutation analysis
D21V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(2Q37.3) MUTATED   10 11
  DEL PEAK  3(2Q37.3) WILD-TYPE 45 44
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           21                            89 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           11                            44 
$`DEL PEAK  3(2Q37.3) MUTATED`
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D9-A148 TCGA-EE-A20F TCGA-EE-A29C 
       11.87        12.10        58.03       148.31        78.87        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29P TCGA-EE-A2GC TCGA-EE-A2MH TCGA-EE-A2MJ 
       13.97        39.62        56.42        43.23        16.96        96.23 
TCGA-EE-A2MK TCGA-EE-A2MS TCGA-EE-A3AF TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1ZJ 
      144.76       136.44        13.81       160.60       216.92        47.38 
TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A26D 
      117.93        64.41        39.58 

$`DEL PEAK  3(2Q37.3) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A1JW TCGA-D9-A1JX 
       65.49        23.77        60.23        24.53         2.70         6.38 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I2 
       11.34         3.22        48.89        36.03       117.17       176.55 
TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       23.44        10.49       215.44        15.68        29.82         8.65 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
       33.73        26.86         4.93        32.19         2.56        18.58 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       14.47        55.89       345.96        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       24.43        58.75        47.54       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
       89.33        54.71        55.00        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      103.27       103.17       204.62       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB 
      248.61        43.23       103.56        41.59         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J 
       25.84         3.68        26.73       138.77        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FS-A1Z4 
      131.08        61.05        44.05        79.99        80.48        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZP TCGA-FS-A1ZS 
        7.76        53.52         9.70        32.71        74.73       148.77 
TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A265 TCGA-GN-A268 
       49.48        12.43        22.98        84.72        62.76 

  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                        11.87                          2.56 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                       216.92                        345.96 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                        56.42                         44.05 
[1] "11.9 - 216.9 (56.4)" "2.6 - 346.0 (44.0)" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "DEL PEAK  3(2Q37.3) MUTATED"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
[1] "hr=" "1.1"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED      7   14
  DEL PEAK  3(2Q37.3) WILD-TYPE   28   63
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  FEMALE                           7                            28
  MALE                            14                            63
                               vv
clus                            M0 M1 M1B M1C
  DEL PEAK  3(2Q37.3) MUTATED   17  0   1   0
  DEL PEAK  3(2Q37.3) WILD-TYPE 81  1   1   1
D21V4, multiclass
     clus
vv    DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  M0                           17                            81
  M1                            0                             1
  M1B                           1                             1
  M1C                           0                             1
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  3(2Q37.3) MUTATED   13  0   1   3  0   0   1   0  1  0
  DEL PEAK  3(2Q37.3) WILD-TYPE 48  1   2   7  1   3   7   1 12  2
D21V5, multiclass
D21V6, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  3(2Q37.3) MUTATED             0       1        0        3        6
  DEL PEAK  3(2Q37.3) WILD-TYPE           1      14        7        8        7
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  3(2Q37.3) MUTATED           0         1         2         0
  DEL PEAK  3(2Q37.3) WILD-TYPE         5         4         0         4
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  3(2Q37.3) MUTATED            1          1          3        0
  DEL PEAK  3(2Q37.3) WILD-TYPE          2          9         15        3
D21V7, multiclass

Clustering(22) Variable = Del Peak  4(3p24.3) mutation analysis
D22V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(3P24.3) MUTATED    8  8
  DEL PEAK  4(3P24.3) WILD-TYPE 47 47
  DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE 
                           16                            94 
  DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE 
                            8                            47 
$`DEL PEAK  4(3P24.3) MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A3C6 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I2 
      112.54       121.22        58.03        48.89        36.03       176.55 
TCGA-EE-A20F TCGA-EE-A29P TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MD 
       78.87        56.42       129.24        28.80        19.76        47.28 
TCGA-EE-A3AA TCGA-FR-A44A TCGA-FS-A1ZS TCGA-GN-A267 
        4.24       160.60       148.77        64.41 

$`DEL PEAK  4(3P24.3) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 
       16.57        28.08        31.59        43.40        65.49        23.77 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JW 
       11.87        12.10        60.23        24.53       148.31         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HY TCGA-DA-A1IB TCGA-DA-A3F3 
        6.38        11.34         3.22       117.17        23.44        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
      215.44        15.68        29.82         8.65        33.73        26.86 
TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        4.93        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 
       18.58        14.47        55.89       345.96        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE 
       78.94        24.43        58.75        47.54        43.23       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS 
      182.01        22.55        89.33        54.71        55.00        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG 
       19.56        67.13        21.67        61.51       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH 
      122.73        25.84         3.68        26.73        13.81       138.77 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       26.37         6.41       131.08        61.05        44.05        79.99 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZG 
       80.48       216.92        28.08         7.76        53.52         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZP TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 
       32.71        47.38        74.73        49.48        12.43        22.98 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A268 TCGA-GN-A26D 
      117.93        84.72        62.76        39.58 

  DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE 
                         4.24                          2.56 
  DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE 
                       176.55                        345.96 
  DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE 
                       61.220                        43.315 
[1] "4.2 - 176.6 (61.2)" "2.6 - 346.0 (43.3)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "DEL PEAK  4(3P24.3) MUTATED"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "DEL PEAK  4(3P24.3) MUTATED"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "DEL PEAK  4(3P24.3) MUTATED"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "DEL PEAK  4(3P24.3) MUTATED"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "DEL PEAK  4(3P24.3) MUTATED"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "DEL PEAK  4(3P24.3) MUTATED"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "DEL PEAK  4(3P24.3) MUTATED" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  4(3P24.3) WILD-TYPE"   "DEL PEAK  4(3P24.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  4(3P24.3) WILD-TYPE" "DEL PEAK  4(3P24.3) WILD-TYPE" 
[1] "hr=" "1.3"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P24.3) MUTATED      8    9
  DEL PEAK  4(3P24.3) WILD-TYPE   27   68
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  FEMALE                           8                            27
  MALE                             9                            68
                               vv
clus                            M0 M1 M1B M1C
  DEL PEAK  4(3P24.3) MUTATED   16  0   0   0
  DEL PEAK  4(3P24.3) WILD-TYPE 82  1   2   1
D22V4, multiclass
     clus
vv    DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  M0                           16                            82
  M1                            0                             1
  M1B                           0                             2
  M1C                           0                             1
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  4(3P24.3) MUTATED   10  1   1   1  0   0   3   0  0  0
  DEL PEAK  4(3P24.3) WILD-TYPE 51  0   2   9  1   3   5   1 13  2
D22V5, multiclass
D22V6, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  4(3P24.3) MUTATED             1       1        0        2        5
  DEL PEAK  4(3P24.3) WILD-TYPE           0      14        7        9        8
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  4(3P24.3) MUTATED           0         0         1         2
  DEL PEAK  4(3P24.3) WILD-TYPE         5         5         1         2
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  4(3P24.3) MUTATED            1          2          1        0
  DEL PEAK  4(3P24.3) WILD-TYPE          2          8         17        3
D22V7, multiclass

Clustering(23) Variable = Del Peak  5(4q34.3) mutation analysis
D23V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(4Q34.3) MUTATED   11 12
  DEL PEAK  5(4Q34.3) WILD-TYPE 44 43
  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                           23                            87 
  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                           12                            43 
$`DEL PEAK  5(4Q34.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q8 TCGA-D3-A2JD TCGA-D9-A148 TCGA-DA-A1HW TCGA-DA-A1HY 
       16.57        28.08        11.87       148.31        36.03       117.17 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A29C TCGA-EE-A29T TCGA-EE-A29X 
      215.44        15.68        33.73        47.84       345.96        17.92 
TCGA-EE-A2A6 TCGA-EE-A2GI TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2MM 
       58.75        22.55        67.13        21.67       129.24       167.87 
TCGA-EE-A2MQ TCGA-EE-A2MT TCGA-FS-A1Z4 TCGA-FS-A1ZG TCGA-FS-A1ZJ 
       43.23        41.59        28.08         9.70        47.38 

$`DEL PEAK  5(4Q34.3) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 
      112.54       121.22        31.59        43.40        65.49        23.77 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A1JW TCGA-D9-A1JX 
       12.10        58.03        60.23        24.53         2.70         6.38 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F3 
       11.34         3.22        48.89       176.55        23.44        10.49 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29D 
       29.82         8.65        26.86         4.93        78.87        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R 
       39.62        32.19         2.56        18.58        56.42        14.47 
TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GC 
       55.89        46.82        78.94        24.43        47.54        43.23 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS 
      135.91       182.01        89.33        54.71        55.00        55.59 
TCGA-EE-A2GT TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
       19.56        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A3AA TCGA-EE-A3AB 
       47.54       248.61       103.56       136.44         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19F 
       25.84         3.68        26.73        13.81       138.77        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A3YN 
        6.41       131.08        61.05        44.05        79.99        80.48 
TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZH TCGA-FS-A1ZP 
      160.60       216.92         7.76        53.52        32.71        74.73 
TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A265 
      148.77        49.48        12.43        22.98       117.93        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       64.41        62.76        39.58 

  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                         9.70                          2.56 
  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                       345.96                        248.61 
  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                        41.59                         47.54 
[1] "9.7 - 346.0 (41.6)" "2.6 - 248.6 (47.5)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  5(4Q34.3) MUTATED"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "DEL PEAK  5(4Q34.3) MUTATED"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  5(4Q34.3) MUTATED"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "DEL PEAK  5(4Q34.3) MUTATED"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  5(4Q34.3) MUTATED"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "DEL PEAK  5(4Q34.3) MUTATED"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
  "DEL PEAK  5(4Q34.3) MUTATED" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  5(4Q34.3) WILD-TYPE"   "DEL PEAK  5(4Q34.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  5(4Q34.3) WILD-TYPE" "DEL PEAK  5(4Q34.3) WILD-TYPE" 
[1] "hr=" "1"  
D23V2, continuous
D23V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4Q34.3) MUTATED     10   13
  DEL PEAK  5(4Q34.3) WILD-TYPE   25   64
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  FEMALE                          10                            25
  MALE                            13                            64
                               vv
clus                            M0 M1 M1B M1C
  DEL PEAK  5(4Q34.3) MUTATED   21  0   2   0
  DEL PEAK  5(4Q34.3) WILD-TYPE 77  1   0   1
D23V4, multiclass
     clus
vv    DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  M0                           21                            77
  M1                            0                             1
  M1B                           2                             0
  M1C                           0                             1
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  5(4Q34.3) MUTATED   12  0   0   2  0   1   2   0  5  1
  DEL PEAK  5(4Q34.3) WILD-TYPE 49  1   3   8  1   2   6   1  8  1
D23V5, multiclass
D23V6, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  5(4Q34.3) MUTATED             0       5        3        3        1
  DEL PEAK  5(4Q34.3) WILD-TYPE           1      10        4        8       12
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  5(4Q34.3) MUTATED           0         0         0         0
  DEL PEAK  5(4Q34.3) WILD-TYPE         5         5         2         4
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  5(4Q34.3) MUTATED            1          2          5        1
  DEL PEAK  5(4Q34.3) WILD-TYPE          2          8         13        2
D23V7, multiclass

Clustering(24) Variable = Del Peak  6(5q31.3) mutation analysis
D24V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(5Q31.3) MUTATED   25 20
  DEL PEAK  6(5Q31.3) WILD-TYPE 30 35
  DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE 
                           45                            65 
  DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE 
                           20                            35 
$`DEL PEAK  6(5Q31.3) MUTATED`
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CF 
       28.08        31.59        11.87        12.10        58.03        24.53 
TCGA-D9-A148 TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
      148.31         6.38        11.34        48.89        36.03       117.17 
TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29E 
      215.44        29.82         8.65         4.93        47.84        39.62 
TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2GB 
       56.42        55.89        17.92        46.82        24.43        47.54 
TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GT TCGA-EE-A2M6 
       43.23       135.91        22.55        89.33        19.56       129.24 
TCGA-EE-A2M7 TCGA-EE-A2MG TCGA-EE-A2MJ TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MQ 
       28.80       103.17        96.23       167.87       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AH TCGA-FR-A44A 
      103.56       122.73         3.68        26.73       138.77       160.60 
TCGA-FS-A1ZW TCGA-GN-A267 TCGA-GN-A268 
       49.48        64.41        62.76 

$`DEL PEAK  6(5Q31.3) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 
       16.57       112.54       121.22        43.40        65.49        23.77 
TCGA-D3-A3CE TCGA-D9-A1JW TCGA-D9-A3Z3 TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F3 
       60.23         2.70         3.22       176.55        23.44        10.49 
TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29H 
       15.68        33.73        26.86        78.87        13.97        32.19 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2A1 TCGA-EE-A2A6 
        2.56        18.58        14.47       345.96        78.94        58.75 
TCGA-EE-A2GH TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M5 
      182.01        54.71        55.00        55.59        67.13        21.67 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MH TCGA-EE-A2MI 
       19.76        61.51        47.28       103.27        16.96       204.62 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA 
      144.76       203.01        47.54       136.44        41.59         4.24 
TCGA-EE-A3AC TCGA-EE-A3AF TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
       25.84        13.81        26.37         6.41       131.08        61.05 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       44.05        79.99        80.48       216.92        28.08         7.76 
TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZP TCGA-FS-A1ZS 
       53.52         9.70        32.71        47.38        74.73       148.77 
TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A26D 
       12.43        22.98       117.93        84.72        39.58 

  DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE 
                         3.68                          2.56 
  DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE 
                       248.61                        345.96 
  DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE 
                        47.54                         47.28 
[1] "3.7 - 248.6 (47.5)" "2.6 - 346.0 (47.3)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
  "DEL PEAK  6(5Q31.3) MUTATED"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
"DEL PEAK  6(5Q31.3) WILD-TYPE" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  6(5Q31.3) WILD-TYPE"   "DEL PEAK  6(5Q31.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "DEL PEAK  6(5Q31.3) MUTATED" "DEL PEAK  6(5Q31.3) WILD-TYPE" 
[1] "hr=" "1.2"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(5Q31.3) MUTATED     15   30
  DEL PEAK  6(5Q31.3) WILD-TYPE   20   47
        clus
vv       DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE
  FEMALE                          15                            20
  MALE                            30                            47
                               vv
clus                            M0 M1 M1B M1C
  DEL PEAK  6(5Q31.3) MUTATED   41  0   2   0
  DEL PEAK  6(5Q31.3) WILD-TYPE 57  1   0   1
D24V4, multiclass
     clus
vv    DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE
  M0                           41                            57
  M1                            0                             1
  M1B                           2                             0
  M1C                           0                             1
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  6(5Q31.3) MUTATED   24  0   3   4  0   2   2   0  7  1
  DEL PEAK  6(5Q31.3) WILD-TYPE 37  1   0   6  1   1   6   1  6  1
D24V5, multiclass
D24V6, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  6(5Q31.3) MUTATED             0       6        4        3        4
  DEL PEAK  6(5Q31.3) WILD-TYPE           1       9        3        8        9
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  6(5Q31.3) MUTATED           3         3         1         0
  DEL PEAK  6(5Q31.3) WILD-TYPE         2         2         1         4
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  6(5Q31.3) MUTATED            3          6          7        1
  DEL PEAK  6(5Q31.3) WILD-TYPE          0          4         11        2
D24V7, multiclass

Clustering(25) Variable = Del Peak  7(6q25.3) mutation analysis
D25V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(6Q25.3) MUTATED   35 31
  DEL PEAK  7(6Q25.3) WILD-TYPE 20 24
  DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE 
                           66                            44 
  DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE 
                           31                            24 
$`DEL PEAK  7(6Q25.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3C6 
       16.57       112.54        31.59        43.40        11.87        58.03 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z3 
       60.23        24.53       148.31         2.70         6.38         3.22 
TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A181 TCGA-EE-A183 
       48.89       117.17        10.49       215.44        33.73        26.86 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L 
        4.93        78.87        47.84        13.97        32.19         2.56 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 
       14.47        55.89       345.96        17.92        78.94        24.43 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GE TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GU 
       58.75        47.54       135.91        55.00        55.59        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2MH 
       21.67       129.24        28.80        61.51        47.28        16.96 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AB 
      144.76       203.01       248.61       136.44        41.59       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19N 
       25.84         3.68        13.81        26.37         6.41        44.05 
TCGA-FS-A1YW TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZS 
      216.92        53.52         9.70        32.71        47.38       148.77 
TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
       49.48        12.43        22.98       117.93        64.41        62.76 

$`DEL PEAK  7(6Q25.3) WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JK TCGA-D9-A3Z1 
      121.22        28.08        65.49        23.77        12.10        11.34 
TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       36.03       176.55        23.44        15.68        29.82         8.65 
TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A2A0 TCGA-EE-A2GC TCGA-EE-A2GH 
       39.62        18.58        56.42        46.82        43.23       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2ME 
       22.55        89.33        54.71        19.56        19.76       103.27 
TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ 
      103.17       204.62        96.23       167.87        47.54        43.23 
TCGA-EE-A2MR TCGA-EE-A3AA TCGA-EE-A3AE TCGA-EE-A3AH TCGA-ER-A19L TCGA-ER-A19M 
      103.56         4.24        26.73       138.77       131.08        61.05 
TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZP 
       79.99        80.48       160.60        28.08         7.76        74.73 
TCGA-GN-A265 TCGA-GN-A26D 
       84.72        39.58 

  DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE 
                         2.56                          4.24 
  DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE 
                       345.96                        204.62 
  DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE 
                        47.33                         47.18 
[1] "2.6 - 346.0 (47.3)" "4.2 - 204.6 (47.2)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  7(6Q25.3) WILD-TYPE" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
  "DEL PEAK  7(6Q25.3) MUTATED"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
"DEL PEAK  7(6Q25.3) WILD-TYPE"   "DEL PEAK  7(6Q25.3) MUTATED" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "DEL PEAK  7(6Q25.3) MUTATED" "DEL PEAK  7(6Q25.3) WILD-TYPE" 
[1] "hr=" "1.1"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(6Q25.3) MUTATED     22   45
  DEL PEAK  7(6Q25.3) WILD-TYPE   13   32
        clus
vv       DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE
  FEMALE                          22                            13
  MALE                            45                            32
                               vv
clus                            M0 M1 M1B M1C
  DEL PEAK  7(6Q25.3) MUTATED   58  1   1   1
  DEL PEAK  7(6Q25.3) WILD-TYPE 40  0   1   0
D25V4, multiclass
     clus
vv    DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE
  M0                           58                            40
  M1                            1                             0
  M1B                           1                             1
  M1C                           1                             0
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  7(6Q25.3) MUTATED   33  0   3   7  1   2   3   1  9  2
  DEL PEAK  7(6Q25.3) WILD-TYPE 28  1   0   3  0   1   5   0  4  0
D25V5, multiclass
D25V6, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  7(6Q25.3) MUTATED             1       7        3        7        9
  DEL PEAK  7(6Q25.3) WILD-TYPE           0       8        4        4        4
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  7(6Q25.3) MUTATED           3         2         0         2
  DEL PEAK  7(6Q25.3) WILD-TYPE         2         3         2         2
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  7(6Q25.3) MUTATED            2          7         11        2
  DEL PEAK  7(6Q25.3) WILD-TYPE          1          3          7        1
D25V7, multiclass

Clustering(26) Variable = Del Peak  8(6q26) mutation analysis
D26V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  8(6Q26) MUTATED   32 30
  DEL PEAK  8(6Q26) WILD-TYPE 23 25
  DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE 
                         62                          48 
  DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE 
                         30                          25 
$`DEL PEAK  8(6Q26) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3C6 
       16.57       112.54        31.59        43.40        11.87        58.03 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z3 
       60.23        24.53       148.31         2.70         6.38         3.22 
TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A181 TCGA-EE-A183 
       48.89       117.17        10.49       215.44        33.73        26.86 
TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29R 
        4.93        47.84        13.97        32.19         2.56        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 
       55.89       345.96        17.92        78.94        24.43        58.75 
TCGA-EE-A2GB TCGA-EE-A2GE TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M5 
       47.54       135.91        55.00        55.59        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MC TCGA-EE-A2MH TCGA-EE-A2MK TCGA-EE-A2MP 
      129.24        28.80        61.51        16.96       144.76       248.61 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF 
      136.44        41.59       122.73        25.84         3.68        13.81 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19N TCGA-FS-A1YW TCGA-FS-A1ZD TCGA-FS-A1ZG 
       26.37         6.41        44.05       216.92        53.52         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FW-A3R5 TCGA-GN-A264 
       32.71        47.38       148.77        49.48        22.98       117.93 
TCGA-GN-A267 TCGA-GN-A268 
       64.41        62.76 

$`DEL PEAK  8(6Q26) WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JK TCGA-D9-A3Z1 
      121.22        28.08        65.49        23.77        12.10        11.34 
TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       36.03       176.55        23.44        15.68        29.82         8.65 
TCGA-EE-A20F TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A2A0 TCGA-EE-A2GC 
       78.87        39.62        18.58        56.42        46.82        43.23 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GT TCGA-EE-A2M8 
      182.01        22.55        89.33        54.71        19.56        19.76 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML 
       47.28       103.27       103.17       204.62        96.23       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A3AA TCGA-EE-A3AE 
      167.87        47.54        43.23       103.56         4.24        26.73 
TCGA-EE-A3AH TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FR-A44A 
      138.77       131.08        61.05        79.99        80.48       160.60 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZP TCGA-FS-A4F9 TCGA-GN-A265 TCGA-GN-A26D 
       28.08         7.76        74.73        12.43        84.72        39.58 

  DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE 
                       2.56                        4.24 
  DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE 
                     345.96                      204.62 
  DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE 
                     45.715                      47.410 
[1] "2.6 - 346.0 (45.7)" "4.2 - 204.6 (47.4)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"DEL PEAK  8(6Q26) WILD-TYPE" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
  "DEL PEAK  8(6Q26) MUTATED"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"DEL PEAK  8(6Q26) WILD-TYPE"   "DEL PEAK  8(6Q26) MUTATED" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "DEL PEAK  8(6Q26) MUTATED" "DEL PEAK  8(6Q26) WILD-TYPE" 
[1] "hr=" "1"  
D26V2, continuous
D26V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  8(6Q26) MUTATED     22   41
  DEL PEAK  8(6Q26) WILD-TYPE   13   36
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  FEMALE                        22                          13
  MALE                          41                          36
                             vv
clus                          M0 M1 M1B M1C
  DEL PEAK  8(6Q26) MUTATED   54  1   1   1
  DEL PEAK  8(6Q26) WILD-TYPE 44  0   1   0
D26V4, multiclass
     clus
vv    DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  M0                         54                          44
  M1                          1                           0
  M1B                         1                           1
  M1C                         1                           0
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  8(6Q26) MUTATED   30  0   3   7  1   2   3   1  8  2
  DEL PEAK  8(6Q26) WILD-TYPE 31  1   0   3  0   1   5   0  5  0
D26V5, multiclass
D26V6, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  8(6Q26) MUTATED             1       7        3        7        6
  DEL PEAK  8(6Q26) WILD-TYPE           0       8        4        4        7
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  8(6Q26) MUTATED           3         2         0         2
  DEL PEAK  8(6Q26) WILD-TYPE         2         3         2         2
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  8(6Q26) MUTATED            2          7         10        2
  DEL PEAK  8(6Q26) WILD-TYPE          1          3          8        1
D26V7, multiclass

Clustering(27) Variable = Del Peak  9(8p23.3) mutation analysis
D27V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(8P23.3) MUTATED   13 16
  DEL PEAK  9(8P23.3) WILD-TYPE 42 39
  DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE 
                           29                            81 
  DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE 
                           16                            39 
$`DEL PEAK  9(8P23.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3C6 TCGA-D9-A148 
       16.57        31.59        43.40        11.87        58.03       148.31 
TCGA-D9-A1JW TCGA-DA-A3F3 TCGA-EE-A183 TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L 
        2.70        10.49        26.86        47.84        32.19         2.56 
TCGA-EE-A2A2 TCGA-EE-A2GI TCGA-EE-A2GS TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       24.43        22.55        55.59       103.17        16.96       204.62 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A3AB TCGA-EE-A3AC 
      167.87        47.54       248.61       136.44       122.73        25.84 
TCGA-ER-A19J TCGA-FS-A1ZJ TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A265 
        6.41        47.38        22.98       117.93        84.72 

$`DEL PEAK  9(8P23.3) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JK 
      112.54       121.22        28.08        65.49        23.77        12.10 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       60.23        24.53         6.38        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F5 TCGA-DA-A3F8 
       36.03       117.17       176.55        23.44       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29D 
       29.82         8.65        33.73         4.93        78.87        13.97 
TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       39.62        18.58        56.42        14.47        55.89       345.96 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       17.92        46.82        78.94        58.75        47.54        43.23 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT 
      135.91       182.01        89.33        54.71        55.00        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MQ 
       47.28       103.27        96.23       144.76       203.01        43.23 
TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
      103.56        41.59         4.24         3.68        26.73        13.81 
TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
      138.77        26.37       131.08        61.05        44.05        79.99 
TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZD 
       80.48       160.60       216.92        28.08         7.76        53.52 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZP TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A4F9 
        9.70        32.71        74.73       148.77        49.48        12.43 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       64.41        62.76        39.58 

  DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE 
                         2.56                          3.22 
  DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE 
                       248.61                        345.96 
  DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE 
                        43.40                         47.54 
[1] "2.6 - 248.6 (43.4)" "3.2 - 346.0 (47.5)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "DEL PEAK  9(8P23.3) MUTATED"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
  "DEL PEAK  9(8P23.3) MUTATED"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
  "DEL PEAK  9(8P23.3) MUTATED"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
  "DEL PEAK  9(8P23.3) MUTATED"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "DEL PEAK  9(8P23.3) MUTATED"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
  "DEL PEAK  9(8P23.3) MUTATED"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
  "DEL PEAK  9(8P23.3) MUTATED"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
  "DEL PEAK  9(8P23.3) MUTATED"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
  "DEL PEAK  9(8P23.3) MUTATED"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
  "DEL PEAK  9(8P23.3) MUTATED"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
  "DEL PEAK  9(8P23.3) MUTATED"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
"DEL PEAK  9(8P23.3) WILD-TYPE"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
  "DEL PEAK  9(8P23.3) MUTATED"   "DEL PEAK  9(8P23.3) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
  "DEL PEAK  9(8P23.3) MUTATED" "DEL PEAK  9(8P23.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
"DEL PEAK  9(8P23.3) WILD-TYPE" "DEL PEAK  9(8P23.3) WILD-TYPE" 
[1] "hr=" "1.2"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(8P23.3) MUTATED      7   22
  DEL PEAK  9(8P23.3) WILD-TYPE   28   55
        clus
vv       DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE
  FEMALE                           7                            28
  MALE                            22                            55
                               vv
clus                            M0 M1 M1B M1C
  DEL PEAK  9(8P23.3) MUTATED   23  1   1   0
  DEL PEAK  9(8P23.3) WILD-TYPE 75  0   1   1
D27V4, multiclass
     clus
vv    DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE
  M0                           23                            75
  M1                            1                             0
  M1B                           1                             1
  M1C                           0                             1
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK  9(8P23.3) MUTATED   15  0   0   2  1   2   1   0  4  0
  DEL PEAK  9(8P23.3) WILD-TYPE 46  1   3   8  0   1   7   1  9  2
D27V5, multiclass
D27V6, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK  9(8P23.3) MUTATED             0       6        2        3        2
  DEL PEAK  9(8P23.3) WILD-TYPE           1       9        5        8       11
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK  9(8P23.3) MUTATED           0         2         0         1
  DEL PEAK  9(8P23.3) WILD-TYPE         5         3         2         3
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK  9(8P23.3) MUTATED            0          3          3        1
  DEL PEAK  9(8P23.3) WILD-TYPE          3          7         15        2
D27V7, multiclass

Clustering(28) Variable = Del Peak 10(9p23) mutation analysis
D28V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 10(9P23) MUTATED   37 36
  DEL PEAK 10(9P23) WILD-TYPE 18 19
  DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE 
                         73                          37 
  DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE 
                         36                          19 
$`DEL PEAK 10(9P23) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2JK TCGA-D3-A3C6 
       16.57       112.54        28.08        43.40        12.10        58.03 
TCGA-D3-A3CF TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
       24.53         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A3F3 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A185 
      117.17       176.55        10.49        29.82        33.73         4.93 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29N 
       78.87        47.84        13.97        39.62         2.56        18.58 
TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A6 
       56.42        55.89       345.96        17.92        46.82        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GL TCGA-EE-A2GS 
       47.54        43.23       135.91        22.55        55.00        55.59 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2MH 
       67.13        21.67       129.24        19.76        47.28        16.96 
TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
      204.62       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE 
      103.56       136.44         4.24       122.73         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
       13.81       138.77        26.37       131.08        61.05        44.05 
TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZH 
       80.48       160.60       216.92         7.76        53.52        32.71 
TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A268 
      148.77        49.48        12.43        22.98       117.93        62.76 
TCGA-GN-A26D 
       39.58 

$`DEL PEAK 10(9P23) WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A3CE 
      121.22        31.59        65.49        23.77        11.87        60.23 
TCGA-D9-A148 TCGA-D9-A1JW TCGA-DA-A1IB TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17Z 
      148.31         2.70        23.44       215.44        15.68         8.65 
TCGA-EE-A183 TCGA-EE-A29H TCGA-EE-A29R TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2GH 
       26.86        32.19        14.47        78.94        24.43       182.01 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GT TCGA-EE-A2M7 TCGA-EE-A2MC TCGA-EE-A2ME 
       89.33        54.71        19.56        28.80        61.51       103.27 
TCGA-EE-A2MG TCGA-EE-A2MJ TCGA-EE-A2MQ TCGA-EE-A2MT TCGA-EE-A3AC TCGA-ER-A19J 
      103.17        96.23        43.23        41.59        25.84         6.41 
TCGA-ER-A1A1 TCGA-FS-A1Z4 TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZP TCGA-GN-A265 
       79.99        28.08         9.70        47.38        74.73        84.72 
TCGA-GN-A267 
       64.41 

  DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE 
                       2.56                        2.70 
  DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE 
                     345.96                      215.44 
  DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE 
                      47.54                       43.23 
[1] "2.6 - 346.0 (47.5)" "2.7 - 215.4 (43.2)"
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D3-A1Q1                  TCGA-D3-A1Q5 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D3-A1Q7                  TCGA-D3-A1Q8 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D3-A1Q9                  TCGA-D3-A2J6 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D3-A2J8                  TCGA-D3-A2J9 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-D3-A2JD                  TCGA-D3-A2JK 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D3-A3C6                  TCGA-D3-A3CE 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-D3-A3CF                  TCGA-D9-A148 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-D9-A1JW                  TCGA-D9-A1JX 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-D9-A3Z1                  TCGA-D9-A3Z3 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-DA-A1HV                  TCGA-DA-A1HW 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-DA-A1HY                  TCGA-DA-A1I2 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-DA-A1IB                  TCGA-DA-A3F3 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-DA-A3F5                  TCGA-DA-A3F8 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A17X                  TCGA-EE-A17Z 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A181                  TCGA-EE-A183 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A185                  TCGA-EE-A20F 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A29C                  TCGA-EE-A29D 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A29E                  TCGA-EE-A29H 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A29L                  TCGA-EE-A29N 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A29P                  TCGA-EE-A29R 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A29S                  TCGA-EE-A29T 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A29X                  TCGA-EE-A2A0 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2A1                  TCGA-EE-A2A2 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A2A6                  TCGA-EE-A2GB 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2GC                  TCGA-EE-A2GE 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2GH                  TCGA-EE-A2GI 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2GJ                  TCGA-EE-A2GK 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A2GL                  TCGA-EE-A2GS 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2GT                  TCGA-EE-A2GU 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2M5                  TCGA-EE-A2M6 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2M7                  TCGA-EE-A2M8 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MC                  TCGA-EE-A2MD 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2ME                  TCGA-EE-A2MG 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A2MH                  TCGA-EE-A2MI 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MJ                  TCGA-EE-A2MK 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2ML                  TCGA-EE-A2MM 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MN                  TCGA-EE-A2MP 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MQ                  TCGA-EE-A2MR 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A2MS                  TCGA-EE-A2MT 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-EE-A3AA                  TCGA-EE-A3AB 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A3AC                  TCGA-EE-A3AD 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A3AE                  TCGA-EE-A3AF 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-EE-A3AH                  TCGA-ER-A19F 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-ER-A19J                  TCGA-ER-A19L 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-ER-A19M                  TCGA-ER-A19N 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-ER-A1A1                  TCGA-FR-A3YN 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FR-A44A                  TCGA-FS-A1YW 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FS-A1Z4                  TCGA-FS-A1Z7 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FS-A1ZD                  TCGA-FS-A1ZG 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-FS-A1ZH                  TCGA-FS-A1ZJ 
  "DEL PEAK 10(9P23) MUTATED" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-FS-A1ZP                  TCGA-FS-A1ZS 
"DEL PEAK 10(9P23) WILD-TYPE"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FS-A1ZW                  TCGA-FS-A4F9 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-FW-A3R5                  TCGA-GN-A264 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
                 TCGA-GN-A265                  TCGA-GN-A267 
"DEL PEAK 10(9P23) WILD-TYPE" "DEL PEAK 10(9P23) WILD-TYPE" 
                 TCGA-GN-A268                  TCGA-GN-A26D 
  "DEL PEAK 10(9P23) MUTATED"   "DEL PEAK 10(9P23) MUTATED" 
[1] "hr=" "1.2"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(9P23) MUTATED     26   49
  DEL PEAK 10(9P23) WILD-TYPE    9   28
        clus
vv       DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE
  FEMALE                        26                           9
  MALE                          49                          28
                             vv
clus                          M0 M1 M1B M1C
  DEL PEAK 10(9P23) MUTATED   65  0   1   1
  DEL PEAK 10(9P23) WILD-TYPE 33  1   1   0
D28V4, multiclass
     clus
vv    DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE
  M0                         65                          33
  M1                          0                           1
  M1B                         1                           1
  M1C                         1                           0
                             vv
clus                          N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 10(9P23) MUTATED   42  1   2   6  1   0   5   1  8  2
  DEL PEAK 10(9P23) WILD-TYPE 19  0   1   4  0   3   3   0  5  0
D28V5, multiclass
D28V6, continuous
                             vv
clus                          I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 10(9P23) MUTATED             1       7        5        7       10
  DEL PEAK 10(9P23) WILD-TYPE           0       8        2        4        3
                             vv
clus                          STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 10(9P23) MUTATED           4         4         2         3
  DEL PEAK 10(9P23) WILD-TYPE         1         1         0         1
                             vv
clus                          STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 10(9P23) MUTATED            1          7         11        2
  DEL PEAK 10(9P23) WILD-TYPE          2          3          7        1
D28V7, multiclass

Clustering(29) Variable = Del Peak 11(9p21.3) mutation analysis
D29V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(9P21.3) MUTATED   44 40
  DEL PEAK 11(9P21.3) WILD-TYPE 11 15
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           84                            26 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           40                            15 
$`DEL PEAK 11(9P21.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2JK TCGA-D3-A3C6 
       16.57       112.54        28.08        43.40        12.10        58.03 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       60.23        24.53       148.31         6.38        11.34         3.22 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       48.89        36.03       117.17       176.55        10.49       215.44 
TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D 
       29.82        33.73         4.93        78.87        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R 
       39.62        32.19         2.56        18.58        56.42        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A6 TCGA-EE-A2GB 
       55.89       345.96        17.92        46.82        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GL TCGA-EE-A2GS 
       43.23       135.91       182.01        22.55        55.00        55.59 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2MH 
       67.13        21.67       129.24        19.76        47.28        16.96 
TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
      204.62       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
      103.56       136.44         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       26.73        13.81       138.77        26.37         6.41       131.08 
TCGA-ER-A19M TCGA-ER-A19N TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z7 
       61.05        44.05        80.48       160.60       216.92         7.76 
TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZS TCGA-FS-A1ZW 
       53.52         9.70        32.71        47.38       148.77        49.48 
TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A268 TCGA-GN-A26D 
       12.43        22.98       117.93        84.72        62.76        39.58 

$`DEL PEAK 11(9P21.3) WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D9-A1JW 
      121.22        31.59        65.49        23.77        11.87         2.70 
TCGA-DA-A1IB TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A2A1 TCGA-EE-A2A2 
       23.44        15.68         8.65        26.86        78.94        24.43 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GT TCGA-EE-A2M7 TCGA-EE-A2MC TCGA-EE-A2ME 
       89.33        54.71        19.56        28.80        61.51       103.27 
TCGA-EE-A2MG TCGA-EE-A2MJ TCGA-EE-A2MQ TCGA-EE-A2MT TCGA-ER-A1A1 TCGA-FS-A1Z4 
      103.17        96.23        43.23        41.59        79.99        28.08 
TCGA-FS-A1ZP TCGA-GN-A267 
       74.73        64.41 

  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                         2.56                          2.70 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                       345.96                        121.22 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                        47.46                         42.41 
[1] "2.6 - 346.0 (47.5)" "2.7 - 121.2 (42.4)"
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A1Q1                    TCGA-D3-A1Q5 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A1Q7                    TCGA-D3-A1Q8 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A1Q9                    TCGA-D3-A2J6 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A2J8                    TCGA-D3-A2J9 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-D3-A2JD                    TCGA-D3-A2JK 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A3C6                    TCGA-D3-A3CE 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D3-A3CF                    TCGA-D9-A148 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D9-A1JW                    TCGA-D9-A1JX 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-D9-A3Z1                    TCGA-D9-A3Z3 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DA-A1HV                    TCGA-DA-A1HW 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DA-A1HY                    TCGA-DA-A1I2 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DA-A1IB                    TCGA-DA-A3F3 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DA-A3F5                    TCGA-DA-A3F8 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A17X                    TCGA-EE-A17Z 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A181                    TCGA-EE-A183 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A185                    TCGA-EE-A20F 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29C                    TCGA-EE-A29D 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29E                    TCGA-EE-A29H 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29L                    TCGA-EE-A29N 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29P                    TCGA-EE-A29R 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29S                    TCGA-EE-A29T 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A29X                    TCGA-EE-A2A0 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2A1                    TCGA-EE-A2A2 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A2A6                    TCGA-EE-A2GB 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2GC                    TCGA-EE-A2GE 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2GH                    TCGA-EE-A2GI 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2GJ                    TCGA-EE-A2GK 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A2GL                    TCGA-EE-A2GS 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2GT                    TCGA-EE-A2GU 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2M5                    TCGA-EE-A2M6 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2M7                    TCGA-EE-A2M8 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MC                    TCGA-EE-A2MD 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2ME                    TCGA-EE-A2MG 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A2MH                    TCGA-EE-A2MI 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MJ                    TCGA-EE-A2MK 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2ML                    TCGA-EE-A2MM 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MN                    TCGA-EE-A2MP 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MQ                    TCGA-EE-A2MR 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A2MS                    TCGA-EE-A2MT 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EE-A3AA                    TCGA-EE-A3AB 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A3AC                    TCGA-EE-A3AD 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A3AE                    TCGA-EE-A3AF 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EE-A3AH                    TCGA-ER-A19F 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ER-A19J                    TCGA-ER-A19L 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ER-A19M                    TCGA-ER-A19N 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-ER-A1A1                    TCGA-FR-A3YN 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FR-A44A                    TCGA-FS-A1YW 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1Z4                    TCGA-FS-A1Z7 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1ZD                    TCGA-FS-A1ZG 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1ZH                    TCGA-FS-A1ZJ 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1ZP                    TCGA-FS-A1ZS 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FS-A1ZW                    TCGA-FS-A4F9 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-FW-A3R5                    TCGA-GN-A264 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-GN-A265                    TCGA-GN-A267 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-GN-A268                    TCGA-GN-A26D 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
[1] "hr=" "1.5"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(9P21.3) MUTATED     31   55
  DEL PEAK 11(9P21.3) WILD-TYPE    4   22
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  FEMALE                          31                             4
  MALE                            55                            22
                               vv
clus                            M0 M1 M1B M1C
  DEL PEAK 11(9P21.3) MUTATED   72  1   2   1
  DEL PEAK 11(9P21.3) WILD-TYPE 26  0   0   0
D29V4, multiclass
     clus
vv    DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  M0                           72                            26
  M1                            1                             0
  M1B                           2                             0
  M1C                           1                             0
                               vv
clus                            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 11(9P21.3) MUTATED   45  1   2   8  1   0   6   1 11  2
  DEL PEAK 11(9P21.3) WILD-TYPE 16  0   1   2  0   3   2   0  2  0
D29V5, multiclass
D29V6, continuous
                               vv
clus                            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 11(9P21.3) MUTATED             1       9        6        7       10
  DEL PEAK 11(9P21.3) WILD-TYPE           0       6        1        4        3
                               vv
clus                            STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 11(9P21.3) MUTATED           4         4         2         4
  DEL PEAK 11(9P21.3) WILD-TYPE         1         1         0         0
                               vv
clus                            STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 11(9P21.3) MUTATED            1          7         14        3
  DEL PEAK 11(9P21.3) WILD-TYPE          2          3          4        0
D29V7, multiclass

Clustering(30) Variable = Del Peak 12(10p15.3) mutation analysis
D30V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 12(10P15.3) MUTATED   23 32
  DEL PEAK 12(10P15.3) WILD-TYPE 32 23
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                            55                             55 
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                            32                             23 
$`DEL PEAK 12(10P15.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2JD 
       16.57       112.54       121.22        28.08        43.40        11.87 
TCGA-D3-A2JK TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY 
       12.10        60.23        24.53         3.22        36.03       117.17 
TCGA-DA-A1I2 TCGA-DA-A3F5 TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A29H 
      176.55       215.44         8.65        33.73         4.93        32.19 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X 
        2.56        18.58        56.42        55.89       345.96        17.92 
TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GS 
       24.43        47.54       135.91        22.55        89.33        55.59 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
      129.24        28.80        19.76       103.17        16.96       204.62 
TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MS TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AD 
      144.76       167.87       136.44         4.24       122.73         3.68 
TCGA-EE-A3AE TCGA-EE-A3AH TCGA-ER-A19L TCGA-FR-A3YN TCGA-FS-A1Z7 TCGA-FS-A1ZD 
       26.73       138.77       131.08        80.48         7.76        53.52 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZW TCGA-GN-A264 TCGA-GN-A267 
        9.70        32.71        47.38        49.48       117.93        64.41 
TCGA-GN-A268 
       62.76 

$`DEL PEAK 12(10P15.3) WILD-TYPE`
TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A3C6 TCGA-D9-A148 TCGA-D9-A1JW 
       31.59        65.49        23.77        58.03       148.31         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F8 
        6.38        11.34        48.89        23.44        10.49        15.68 
TCGA-EE-A17X TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       29.82        26.86        78.87        47.84        13.97        39.62 
TCGA-EE-A29R TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GH 
       14.47        46.82        78.94        58.75        43.23       182.01 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2MC 
       54.71        55.00        19.56        67.13        21.67        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP 
       47.28       103.27        96.23       203.01        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A3AC TCGA-EE-A3AF TCGA-ER-A19F 
       43.23       103.56        41.59        25.84        13.81        26.37 
TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A44A TCGA-FS-A1YW 
        6.41        61.05        44.05        79.99       160.60       216.92 
TCGA-FS-A1Z4 TCGA-FS-A1ZP TCGA-FS-A1ZS TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A265 
       28.08        74.73       148.77        12.43        22.98        84.72 
TCGA-GN-A26D 
       39.58 

  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                          2.56                           2.70 
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                        345.96                         248.61 
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                         47.54                          46.82 
[1] "2.6 - 346.0 (47.5)" "2.7 - 248.6 (46.8)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
  "DEL PEAK 12(10P15.3) MUTATED"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
[1] "hr=" "1.3"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(10P15.3) MUTATED     20   35
  DEL PEAK 12(10P15.3) WILD-TYPE   15   42
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  FEMALE                           20                             15
  MALE                             35                             42
                                vv
clus                             M0 M1 M1B M1C
  DEL PEAK 12(10P15.3) MUTATED   48  0   1   1
  DEL PEAK 12(10P15.3) WILD-TYPE 50  1   1   0
D30V4, multiclass
     clus
vv    DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  M0                            48                             50
  M1                             0                              1
  M1B                            1                              1
  M1C                            1                              0
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 12(10P15.3) MUTATED   28  1   3   6  0   0   3   1  7  1
  DEL PEAK 12(10P15.3) WILD-TYPE 33  0   0   4  1   3   5   0  6  1
D30V5, multiclass
D30V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 12(10P15.3) MUTATED             1       5        4        4        6
  DEL PEAK 12(10P15.3) WILD-TYPE           0      10        3        7        7
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 12(10P15.3) MUTATED           2         4         1         2
  DEL PEAK 12(10P15.3) WILD-TYPE         3         1         1         2
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 12(10P15.3) MUTATED            2          4         11        2
  DEL PEAK 12(10P15.3) WILD-TYPE          1          6          7        1
D30V7, multiclass

Clustering(31) Variable = Del Peak 13(10q23.31) mutation analysis
D31V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 13(10Q23.31) MUTATED   29 34
  DEL PEAK 13(10Q23.31) WILD-TYPE 26 21
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             63                              47 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             34                              21 
$`DEL PEAK 13(10Q23.31) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JD 
       16.57       112.54       121.22        28.08        31.59        11.87 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JX 
       12.10        58.03        60.23        24.53       148.31         6.38 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17Z 
        3.22        36.03       176.55       215.44        15.68         8.65 
TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L 
       33.73         4.93        78.87        13.97        32.19         2.56 
TCGA-EE-A29P TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A6 
       56.42       345.96        17.92        46.82        24.43        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GS 
       47.54        43.23       135.91        22.55        89.33        55.59 
TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2MG 
       67.13       129.24        28.80        19.76        47.28       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A3AA 
       16.96       204.62       144.76       167.87       248.61         4.24 
TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19L 
      122.73         3.68        26.73        13.81       138.77       131.08 
TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       80.48       160.60         7.76        53.52        32.71        47.38 
TCGA-FS-A1ZW TCGA-GN-A264 TCGA-GN-A267 
       49.48       117.93        64.41 

$`DEL PEAK 13(10Q23.31) WILD-TYPE`
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-DA-A1HV 
       43.40        65.49        23.77         2.70        11.34        48.89 
TCGA-DA-A1HY TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-EE-A17X TCGA-EE-A183 TCGA-EE-A29C 
      117.17        23.44        10.49        29.82        26.86        47.84 
TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A2A1 TCGA-EE-A2GH 
       39.62        18.58        14.47        55.89        78.94       182.01 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2ME 
       54.71        55.00        19.56        21.67        61.51       103.27 
TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
       96.23       203.01        47.54        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A3AC TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N 
       41.59        25.84        26.37         6.41        61.05        44.05 
TCGA-ER-A1A1 TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1ZG TCGA-FS-A1ZP TCGA-FS-A1ZS 
       79.99       216.92        28.08         9.70        74.73       148.77 
TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A265 TCGA-GN-A268 TCGA-GN-A26D 
       12.43        22.98        84.72        62.76        39.58 

  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                           2.56                            2.70 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                         345.96                          216.92 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                          47.38                           44.05 
[1] "2.6 - 346.0 (47.4)" "2.7 - 216.9 (44.0)"
                     TCGA-D3-A1Q1                      TCGA-D3-A1Q5 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D3-A1Q7                      TCGA-D3-A1Q8 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D3-A1Q9                      TCGA-D3-A2J6 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-D3-A2J8                      TCGA-D3-A2J9 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-D3-A2JD                      TCGA-D3-A2JK 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D3-A3C6                      TCGA-D3-A3CE 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D3-A3CF                      TCGA-D9-A148 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D9-A1JW                      TCGA-D9-A1JX 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D9-A3Z1                      TCGA-D9-A3Z3 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DA-A1HV                      TCGA-DA-A1HW 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DA-A1HY                      TCGA-DA-A1I2 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DA-A1IB                      TCGA-DA-A3F3 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A3F5                      TCGA-DA-A3F8 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A17X                      TCGA-EE-A17Z 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A181                      TCGA-EE-A183 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A185                      TCGA-EE-A20F 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A29C                      TCGA-EE-A29D 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A29E                      TCGA-EE-A29H 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A29L                      TCGA-EE-A29N 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A29P                      TCGA-EE-A29R 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A29S                      TCGA-EE-A29T 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A29X                      TCGA-EE-A2A0 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2A1                      TCGA-EE-A2A2 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2A6                      TCGA-EE-A2GB 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2GC                      TCGA-EE-A2GE 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2GH                      TCGA-EE-A2GI 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2GJ                      TCGA-EE-A2GK 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A2GL                      TCGA-EE-A2GS 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2GT                      TCGA-EE-A2GU 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2M5                      TCGA-EE-A2M6 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2M7                      TCGA-EE-A2M8 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MC                      TCGA-EE-A2MD 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2ME                      TCGA-EE-A2MG 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MH                      TCGA-EE-A2MI 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MJ                      TCGA-EE-A2MK 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2ML                      TCGA-EE-A2MM 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MN                      TCGA-EE-A2MP 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MQ                      TCGA-EE-A2MR 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A2MS                      TCGA-EE-A2MT 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A3AA                      TCGA-EE-A3AB 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A3AC                      TCGA-EE-A3AD 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A3AE                      TCGA-EE-A3AF 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A3AH                      TCGA-ER-A19F 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A19J                      TCGA-ER-A19L 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-ER-A19M                      TCGA-ER-A19N 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A1A1                      TCGA-FR-A3YN 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FR-A44A                      TCGA-FS-A1YW 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FS-A1Z4                      TCGA-FS-A1Z7 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FS-A1ZD                      TCGA-FS-A1ZG 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FS-A1ZH                      TCGA-FS-A1ZJ 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FS-A1ZP                      TCGA-FS-A1ZS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FS-A1ZW                      TCGA-FS-A4F9 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FW-A3R5                      TCGA-GN-A264 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-GN-A265                      TCGA-GN-A267 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-GN-A268                      TCGA-GN-A26D 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-D3-A1Q1                      TCGA-D3-A1Q5 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D3-A1Q7                      TCGA-D3-A1Q8 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D3-A1Q9                      TCGA-D3-A2J6 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-D3-A2J8                      TCGA-D3-A2J9 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-D3-A2JD                      TCGA-D3-A2JK 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D3-A3C6                      TCGA-D3-A3CE 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D3-A3CF                      TCGA-D9-A148 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D9-A1JW                      TCGA-D9-A1JX 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D9-A3Z1                      TCGA-D9-A3Z3 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DA-A1HV                      TCGA-DA-A1HW 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DA-A1HY                      TCGA-DA-A1I2 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DA-A1IB                      TCGA-DA-A3F3 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A3F5                      TCGA-DA-A3F8 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A17X                      TCGA-EE-A17Z 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A181                      TCGA-EE-A183 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A185                      TCGA-EE-A20F 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A29C                      TCGA-EE-A29D 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A29E                      TCGA-EE-A29H 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A29L                      TCGA-EE-A29N 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A29P                      TCGA-EE-A29R 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A29S                      TCGA-EE-A29T 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A29X                      TCGA-EE-A2A0 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2A1                      TCGA-EE-A2A2 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2A6                      TCGA-EE-A2GB 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2GC                      TCGA-EE-A2GE 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2GH                      TCGA-EE-A2GI 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2GJ                      TCGA-EE-A2GK 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A2GL                      TCGA-EE-A2GS 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2GT                      TCGA-EE-A2GU 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2M5                      TCGA-EE-A2M6 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2M7                      TCGA-EE-A2M8 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MC                      TCGA-EE-A2MD 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2ME                      TCGA-EE-A2MG 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MH                      TCGA-EE-A2MI 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MJ                      TCGA-EE-A2MK 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2ML                      TCGA-EE-A2MM 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MN                      TCGA-EE-A2MP 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MQ                      TCGA-EE-A2MR 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A2MS                      TCGA-EE-A2MT 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A3AA                      TCGA-EE-A3AB 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A3AC                      TCGA-EE-A3AD 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A3AE                      TCGA-EE-A3AF 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A3AH                      TCGA-ER-A19F 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A19J                      TCGA-ER-A19L 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-ER-A19M                      TCGA-ER-A19N 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A1A1                      TCGA-FR-A3YN 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FR-A44A                      TCGA-FS-A1YW 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FS-A1Z4                      TCGA-FS-A1Z7 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FS-A1ZD                      TCGA-FS-A1ZG 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FS-A1ZH                      TCGA-FS-A1ZJ 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FS-A1ZP                      TCGA-FS-A1ZS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FS-A1ZW                      TCGA-FS-A4F9 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FW-A3R5                      TCGA-GN-A264 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-GN-A265                      TCGA-GN-A267 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-GN-A268                      TCGA-GN-A26D 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-D3-A1Q1                      TCGA-D3-A1Q5 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D3-A1Q7                      TCGA-D3-A1Q8 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D3-A1Q9                      TCGA-D3-A2J6 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-D3-A2J8                      TCGA-D3-A2J9 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-D3-A2JD                      TCGA-D3-A2JK 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D3-A3C6                      TCGA-D3-A3CE 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D3-A3CF                      TCGA-D9-A148 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D9-A1JW                      TCGA-D9-A1JX 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-D9-A3Z1                      TCGA-D9-A3Z3 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DA-A1HV                      TCGA-DA-A1HW 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DA-A1HY                      TCGA-DA-A1I2 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DA-A1IB                      TCGA-DA-A3F3 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DA-A3F5                      TCGA-DA-A3F8 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A17X                      TCGA-EE-A17Z 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A181                      TCGA-EE-A183 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A185                      TCGA-EE-A20F 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A29C                      TCGA-EE-A29D 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A29E                      TCGA-EE-A29H 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A29L                      TCGA-EE-A29N 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A29P                      TCGA-EE-A29R 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A29S                      TCGA-EE-A29T 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A29X                      TCGA-EE-A2A0 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2A1                      TCGA-EE-A2A2 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2A6                      TCGA-EE-A2GB 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2GC                      TCGA-EE-A2GE 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2GH                      TCGA-EE-A2GI 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2GJ                      TCGA-EE-A2GK 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A2GL                      TCGA-EE-A2GS 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2GT                      TCGA-EE-A2GU 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2M5                      TCGA-EE-A2M6 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2M7                      TCGA-EE-A2M8 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MC                      TCGA-EE-A2MD 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2ME                      TCGA-EE-A2MG 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MH                      TCGA-EE-A2MI 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MJ                      TCGA-EE-A2MK 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2ML                      TCGA-EE-A2MM 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MN                      TCGA-EE-A2MP 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A2MQ                      TCGA-EE-A2MR 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A2MS                      TCGA-EE-A2MT 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EE-A3AA                      TCGA-EE-A3AB 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A3AC                      TCGA-EE-A3AD 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A3AE                      TCGA-EE-A3AF 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EE-A3AH                      TCGA-ER-A19F 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A19J                      TCGA-ER-A19L 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-ER-A19M                      TCGA-ER-A19N 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ER-A1A1                      TCGA-FR-A3YN 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FR-A44A                      TCGA-FS-A1YW 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FS-A1Z4                      TCGA-FS-A1Z7 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FS-A1ZD                      TCGA-FS-A1ZG 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FS-A1ZH                      TCGA-FS-A1ZJ 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FS-A1ZP                      TCGA-FS-A1ZS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FS-A1ZW                      TCGA-FS-A4F9 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FW-A3R5                      TCGA-GN-A264 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-GN-A265                      TCGA-GN-A267 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-GN-A268                      TCGA-GN-A26D 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
[1] "hr=" "1.1"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 13(10Q23.31) MUTATED     26   38
  DEL PEAK 13(10Q23.31) WILD-TYPE    9   39
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  FEMALE                            26                               9
  MALE                              38                              39
                                 vv
clus                              M0 M1 M1B M1C
  DEL PEAK 13(10Q23.31) MUTATED   55  0   2   1
  DEL PEAK 13(10Q23.31) WILD-TYPE 43  1   0   0
D31V4, multiclass
     clus
vv    DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  M0                             55                              43
  M1                              0                               1
  M1B                             2                               0
  M1C                             1                               0
                                 vv
clus                              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 13(10Q23.31) MUTATED   32  1   3   7  0   1   4   1  7  2
  DEL PEAK 13(10Q23.31) WILD-TYPE 29  0   0   3  1   2   4   0  6  0
D31V5, multiclass
D31V6, continuous
                                 vv
clus                              I OR II NOS STAGE I STAGE IA STAGE IB
  DEL PEAK 13(10Q23.31) MUTATED             1       6        6        5
  DEL PEAK 13(10Q23.31) WILD-TYPE           0       9        1        6
                                 vv
clus                              STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 13(10Q23.31) MUTATED          8         2         3         1
  DEL PEAK 13(10Q23.31) WILD-TYPE        5         3         2         1
                                 vv
clus                              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 13(10Q23.31) MUTATED           3          2          6         10
  DEL PEAK 13(10Q23.31) WILD-TYPE         1          1          4          8
                                 vv
clus                              STAGE IV
  DEL PEAK 13(10Q23.31) MUTATED          2
  DEL PEAK 13(10Q23.31) WILD-TYPE        1
D31V7, multiclass

Clustering(32) Variable = Del Peak 14(11q23.1) mutation analysis
D32V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 14(11Q23.1) MUTATED   33 27
  DEL PEAK 14(11Q23.1) WILD-TYPE 22 28
  DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE 
                            60                             50 
  DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE 
                            27                             28 
$`DEL PEAK 14(11Q23.1) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54       121.22        28.08        31.59        43.40 
TCGA-D3-A2JD TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D9-A148 TCGA-D9-A1JX TCGA-D9-A3Z3 
       11.87        58.03        24.53       148.31         6.38         3.22 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A20F TCGA-EE-A29C 
       48.89        36.03        10.49       215.44        78.87        47.84 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29S 
       13.97        32.19         2.56        18.58        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GI 
      345.96        24.43        47.54        43.23       135.91        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2MJ 
       89.33        67.13       129.24        61.51        47.28        96.23 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A2MT 
      203.01       167.87        47.54       248.61       136.44        41.59 
TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M 
      122.73         3.68        26.73        26.37       131.08        61.05 
TCGA-ER-A19N TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1Z7 TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       44.05        80.48       160.60         7.76        32.71        47.38 
TCGA-FS-A1ZW TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       49.48       117.93        84.72        64.41        62.76        39.58 

$`DEL PEAK 14(11Q23.1) WILD-TYPE`
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JK TCGA-D3-A3CE TCGA-D9-A1JW TCGA-D9-A3Z1 
       65.49        23.77        12.10        60.23         2.70        11.34 
TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
      117.17       176.55        23.44        15.68        29.82         8.65 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A29E TCGA-EE-A29P TCGA-EE-A29X 
       33.73        26.86         4.93        39.62        56.42        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A6 TCGA-EE-A2GH TCGA-EE-A2GK TCGA-EE-A2GL 
       46.82        78.94        58.75       182.01        54.71        55.00 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2ME 
       55.59        19.56        21.67        28.80        19.76       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MQ TCGA-EE-A2MR 
      103.17        16.96       204.62       144.76        43.23       103.56 
TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19J TCGA-ER-A1A1 
        4.24        25.84        13.81       138.77         6.41        79.99 
TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZP TCGA-FS-A1ZS 
      216.92        28.08        53.52         9.70        74.73       148.77 
TCGA-FS-A4F9 TCGA-FW-A3R5 
       12.43        22.98 

  DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE 
                          2.56                           2.70 
  DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE 
                        345.96                         216.92 
  DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE 
                        47.690                         36.675 
[1] "2.6 - 346.0 (47.7)" "2.7 - 216.9 (36.7)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 14(11Q23.1) WILD-TYPE" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 14(11Q23.1) MUTATED" "DEL PEAK 14(11Q23.1) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK 14(11Q23.1) WILD-TYPE"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "DEL PEAK 14(11Q23.1) MUTATED"   "DEL PEAK 14(11Q23.1) MUTATED" 
[1] "hr=" "1.5"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(11Q23.1) MUTATED     19   42
  DEL PEAK 14(11Q23.1) WILD-TYPE   16   35
        clus
vv       DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE
  FEMALE                           19                             16
  MALE                             42                             35
                                vv
clus                             M0 M1 M1B M1C
  DEL PEAK 14(11Q23.1) MUTATED   51  0   2   1
  DEL PEAK 14(11Q23.1) WILD-TYPE 47  1   0   0
D32V4, multiclass
     clus
vv    DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE
  M0                            51                             47
  M1                             0                              1
  M1B                            2                              0
  M1C                            1                              0
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 14(11Q23.1) MUTATED   32  0   3   8  0   1   2   1  6  2
  DEL PEAK 14(11Q23.1) WILD-TYPE 29  1   0   2  1   2   6   0  7  0
D32V5, multiclass
D32V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 14(11Q23.1) MUTATED             1       7        5        6        6
  DEL PEAK 14(11Q23.1) WILD-TYPE           0       8        2        5        7
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 14(11Q23.1) MUTATED           1         3         1         0
  DEL PEAK 14(11Q23.1) WILD-TYPE         4         2         1         4
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 14(11Q23.1) MUTATED            2          8          8        2
  DEL PEAK 14(11Q23.1) WILD-TYPE          1          2         10        1
D32V7, multiclass

Clustering(33) Variable = Del Peak 15(12q24.33) mutation analysis
D33V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 15(12Q24.33) MUTATED   12  9
  DEL PEAK 15(12Q24.33) WILD-TYPE 43 46
  DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE 
                             21                              89 
  DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE 
                              9                              46 
$`DEL PEAK 15(12Q24.33) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A2J6 TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A2 TCGA-EE-A2GU 
       16.57        43.40        55.89        17.92        24.43        67.13 
TCGA-EE-A2MG TCGA-EE-A2MK TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A3AA TCGA-EE-A3AD 
      103.17       144.76       248.61       136.44         4.24         3.68 
TCGA-EE-A3AE TCGA-FS-A1Z4 TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A4F9 TCGA-FW-A3R5 
       26.73        28.08        32.71        47.38        12.43        22.98 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       84.72        64.41        62.76 

$`DEL PEAK 15(12Q24.33) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 
      112.54       121.22        28.08        31.59        65.49        23.77 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A148 
       11.87        12.10        58.03        60.23        24.53       148.31 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        2.70         6.38        11.34         3.22        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
      117.17       176.55        23.44        10.49       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F 
       29.82         8.65        33.73        26.86         4.93        78.87 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
       47.84        13.97        39.62        32.19         2.56        18.58 
TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A6 
       56.42        14.47       345.96        46.82        78.94        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       47.54        43.23       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M6 
       54.71        55.00        55.59        19.56        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MH 
       28.80        19.76        61.51        47.28       103.27        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ 
      204.62        96.23       203.01       167.87        47.54        43.23 
TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AF TCGA-EE-A3AH 
      103.56        41.59       122.73        25.84        13.81       138.77 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       26.37         6.41       131.08        61.05        44.05        79.99 
TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZG 
       80.48       160.60       216.92         7.76        53.52         9.70 
TCGA-FS-A1ZP TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-GN-A264 TCGA-GN-A26D 
       74.73       148.77        49.48       117.93        39.58 

  DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE 
                           3.68                            2.56 
  DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE 
                         248.61                          345.96 
  DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE 
                          43.40                           47.54 
[1] "3.7 - 248.6 (43.4)" "2.6 - 346.0 (47.5)"
                     TCGA-D3-A1Q1                      TCGA-D3-A1Q5 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q7                      TCGA-D3-A1Q8 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q9                      TCGA-D3-A2J6 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-D3-A2J8                      TCGA-D3-A2J9 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A2JD                      TCGA-D3-A2JK 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A3C6                      TCGA-D3-A3CE 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A3CF                      TCGA-D9-A148 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D9-A1JW                      TCGA-D9-A1JX 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D9-A3Z1                      TCGA-D9-A3Z3 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1HV                      TCGA-DA-A1HW 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1HY                      TCGA-DA-A1I2 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1IB                      TCGA-DA-A3F3 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A3F5                      TCGA-DA-A3F8 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A17X                      TCGA-EE-A17Z 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A181                      TCGA-EE-A183 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A185                      TCGA-EE-A20F 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29C                      TCGA-EE-A29D 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29E                      TCGA-EE-A29H 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29L                      TCGA-EE-A29N 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29P                      TCGA-EE-A29R 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29S                      TCGA-EE-A29T 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29X                      TCGA-EE-A2A0 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2A1                      TCGA-EE-A2A2 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2A6                      TCGA-EE-A2GB 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GC                      TCGA-EE-A2GE 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GH                      TCGA-EE-A2GI 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GJ                      TCGA-EE-A2GK 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GL                      TCGA-EE-A2GS 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GT                      TCGA-EE-A2GU 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2M5                      TCGA-EE-A2M6 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2M7                      TCGA-EE-A2M8 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2MC                      TCGA-EE-A2MD 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2ME                      TCGA-EE-A2MG 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2MH                      TCGA-EE-A2MI 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2MJ                      TCGA-EE-A2MK 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2ML                      TCGA-EE-A2MM 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2MN                      TCGA-EE-A2MP 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2MQ                      TCGA-EE-A2MR 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2MS                      TCGA-EE-A2MT 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A3AA                      TCGA-EE-A3AB 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A3AC                      TCGA-EE-A3AD 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A3AE                      TCGA-EE-A3AF 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A3AH                      TCGA-ER-A19F 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19J                      TCGA-ER-A19L 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19M                      TCGA-ER-A19N 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A1A1                      TCGA-FR-A3YN 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FR-A44A                      TCGA-FS-A1YW 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1Z4                      TCGA-FS-A1Z7 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1ZD                      TCGA-FS-A1ZG 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1ZH                      TCGA-FS-A1ZJ 
  "DEL PEAK 15(12Q24.33) MUTATED"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-FS-A1ZP                      TCGA-FS-A1ZS 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1ZW                      TCGA-FS-A4F9 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-FW-A3R5                      TCGA-GN-A264 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A265                      TCGA-GN-A267 
  "DEL PEAK 15(12Q24.33) MUTATED"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-GN-A268                      TCGA-GN-A26D 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q1                      TCGA-D3-A1Q5 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q7                      TCGA-D3-A1Q8 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q9                      TCGA-D3-A2J6 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-D3-A2J8                      TCGA-D3-A2J9 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A2JD                      TCGA-D3-A2JK 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A3C6                      TCGA-D3-A3CE 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A3CF                      TCGA-D9-A148 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D9-A1JW                      TCGA-D9-A1JX 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D9-A3Z1                      TCGA-D9-A3Z3 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1HV                      TCGA-DA-A1HW 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1HY                      TCGA-DA-A1I2 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1IB                      TCGA-DA-A3F3 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A3F5                      TCGA-DA-A3F8 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A17X                      TCGA-EE-A17Z 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A181                      TCGA-EE-A183 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A185                      TCGA-EE-A20F 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29C                      TCGA-EE-A29D 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29E                      TCGA-EE-A29H 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29L                      TCGA-EE-A29N 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29P                      TCGA-EE-A29R 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29S                      TCGA-EE-A29T 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29X                      TCGA-EE-A2A0 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2A1                      TCGA-EE-A2A2 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2A6                      TCGA-EE-A2GB 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GC                      TCGA-EE-A2GE 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GH                      TCGA-EE-A2GI 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GJ                      TCGA-EE-A2GK 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GL                      TCGA-EE-A2GS 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GT                      TCGA-EE-A2GU 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2M5                      TCGA-EE-A2M6 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2M7                      TCGA-EE-A2M8 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2MC                      TCGA-EE-A2MD 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2ME                      TCGA-EE-A2MG 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2MH                      TCGA-EE-A2MI 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2MJ                      TCGA-EE-A2MK 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2ML                      TCGA-EE-A2MM 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2MN                      TCGA-EE-A2MP 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2MQ                      TCGA-EE-A2MR 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2MS                      TCGA-EE-A2MT 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A3AA                      TCGA-EE-A3AB 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A3AC                      TCGA-EE-A3AD 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A3AE                      TCGA-EE-A3AF 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A3AH                      TCGA-ER-A19F 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19J                      TCGA-ER-A19L 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19M                      TCGA-ER-A19N 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A1A1                      TCGA-FR-A3YN 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FR-A44A                      TCGA-FS-A1YW 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1Z4                      TCGA-FS-A1Z7 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1ZD                      TCGA-FS-A1ZG 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1ZH                      TCGA-FS-A1ZJ 
  "DEL PEAK 15(12Q24.33) MUTATED"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-FS-A1ZP                      TCGA-FS-A1ZS 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1ZW                      TCGA-FS-A4F9 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-FW-A3R5                      TCGA-GN-A264 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A265                      TCGA-GN-A267 
  "DEL PEAK 15(12Q24.33) MUTATED"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-GN-A268                      TCGA-GN-A26D 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q1                      TCGA-D3-A1Q5 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q7                      TCGA-D3-A1Q8 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A1Q9                      TCGA-D3-A2J6 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-D3-A2J8                      TCGA-D3-A2J9 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A2JD                      TCGA-D3-A2JK 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A3C6                      TCGA-D3-A3CE 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D3-A3CF                      TCGA-D9-A148 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D9-A1JW                      TCGA-D9-A1JX 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-D9-A3Z1                      TCGA-D9-A3Z3 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1HV                      TCGA-DA-A1HW 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1HY                      TCGA-DA-A1I2 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A1IB                      TCGA-DA-A3F3 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-DA-A3F5                      TCGA-DA-A3F8 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A17X                      TCGA-EE-A17Z 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A181                      TCGA-EE-A183 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A185                      TCGA-EE-A20F 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29C                      TCGA-EE-A29D 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29E                      TCGA-EE-A29H 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29L                      TCGA-EE-A29N 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29P                      TCGA-EE-A29R 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29S                      TCGA-EE-A29T 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A29X                      TCGA-EE-A2A0 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2A1                      TCGA-EE-A2A2 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2A6                      TCGA-EE-A2GB 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GC                      TCGA-EE-A2GE 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GH                      TCGA-EE-A2GI 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GJ                      TCGA-EE-A2GK 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GL                      TCGA-EE-A2GS 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2GT                      TCGA-EE-A2GU 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2M5                      TCGA-EE-A2M6 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2M7                      TCGA-EE-A2M8 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2MC                      TCGA-EE-A2MD 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2ME                      TCGA-EE-A2MG 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2MH                      TCGA-EE-A2MI 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2MJ                      TCGA-EE-A2MK 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2ML                      TCGA-EE-A2MM 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2MN                      TCGA-EE-A2MP 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A2MQ                      TCGA-EE-A2MR 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A2MS                      TCGA-EE-A2MT 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A3AA                      TCGA-EE-A3AB 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A3AC                      TCGA-EE-A3AD 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-EE-A3AE                      TCGA-EE-A3AF 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-EE-A3AH                      TCGA-ER-A19F 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19J                      TCGA-ER-A19L 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A19M                      TCGA-ER-A19N 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-ER-A1A1                      TCGA-FR-A3YN 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FR-A44A                      TCGA-FS-A1YW 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1Z4                      TCGA-FS-A1Z7 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1ZD                      TCGA-FS-A1ZG 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1ZH                      TCGA-FS-A1ZJ 
  "DEL PEAK 15(12Q24.33) MUTATED"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-FS-A1ZP                      TCGA-FS-A1ZS 
"DEL PEAK 15(12Q24.33) WILD-TYPE" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-FS-A1ZW                      TCGA-FS-A4F9 
"DEL PEAK 15(12Q24.33) WILD-TYPE"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-FW-A3R5                      TCGA-GN-A264 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
                     TCGA-GN-A265                      TCGA-GN-A267 
  "DEL PEAK 15(12Q24.33) MUTATED"   "DEL PEAK 15(12Q24.33) MUTATED" 
                     TCGA-GN-A268                      TCGA-GN-A26D 
  "DEL PEAK 15(12Q24.33) MUTATED" "DEL PEAK 15(12Q24.33) WILD-TYPE" 
[1] "hr=" "1.1"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 15(12Q24.33) MUTATED      9   12
  DEL PEAK 15(12Q24.33) WILD-TYPE   26   65
        clus
vv       DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE
  FEMALE                             9                              26
  MALE                              12                              65
                                 vv
clus                              M0 M1 M1B M1C
  DEL PEAK 15(12Q24.33) MUTATED   17  0   0   1
  DEL PEAK 15(12Q24.33) WILD-TYPE 81  1   2   0
D33V4, multiclass
     clus
vv    DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE
  M0                             17                              81
  M1                              0                               1
  M1B                             0                               2
  M1C                             1                               0
                                 vv
clus                              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 15(12Q24.33) MUTATED   12  0   1   1  1   0   0   1  2  0
  DEL PEAK 15(12Q24.33) WILD-TYPE 49  1   2   9  0   3   8   0 11  2
D33V5, multiclass
D33V6, continuous
                                 vv
clus                              I OR II NOS STAGE I STAGE IA STAGE IB
  DEL PEAK 15(12Q24.33) MUTATED             0       4        2        1
  DEL PEAK 15(12Q24.33) WILD-TYPE           1      11        5       10
                                 vv
clus                              STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 15(12Q24.33) MUTATED          2         1         2         0
  DEL PEAK 15(12Q24.33) WILD-TYPE       11         4         3         2
                                 vv
clus                              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 15(12Q24.33) MUTATED           1          1          1          2
  DEL PEAK 15(12Q24.33) WILD-TYPE         3          2          9         16
                                 vv
clus                              STAGE IV
  DEL PEAK 15(12Q24.33) MUTATED          1
  DEL PEAK 15(12Q24.33) WILD-TYPE        2
D33V7, multiclass

Clustering(34) Variable = Del Peak 16(13q34) mutation analysis
D34V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 16(13Q34) MUTATED   17 14
  DEL PEAK 16(13Q34) WILD-TYPE 38 41
  DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE 
                          31                           79 
  DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE 
                          14                           41 
$`DEL PEAK 16(13Q34) MUTATED`
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D9-A148 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       28.08        31.59        65.49       148.31         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A3F5 TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E 
       36.03       176.55       215.44        33.73        13.97        39.62 
TCGA-EE-A29N TCGA-EE-A29T TCGA-EE-A2A6 TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ 
       18.58       345.96        58.75       135.91        22.55        89.33 
TCGA-EE-A2M5 TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A3AB 
       21.67       103.17        16.96       103.56       136.44       122.73 
TCGA-EE-A3AE TCGA-EE-A3AH TCGA-FR-A3YN TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A4F9 
       26.73       138.77        80.48        32.71        47.38        12.43 
TCGA-GN-A26D 
       39.58 

$`DEL PEAK 16(13Q34) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A2JD 
       16.57       112.54       121.22        43.40        23.77        11.87 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A1JW TCGA-D9-A1JX 
       12.10        58.03        60.23        24.53         2.70         6.38 
TCGA-D9-A3Z1 TCGA-DA-A1HY TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X 
       11.34       117.17        23.44        10.49        15.68        29.82 
TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29H 
        8.65        26.86         4.93        78.87        47.84        32.19 
TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 
        2.56        56.42        14.47        55.89        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GH TCGA-EE-A2GK 
       78.94        24.43        47.54        43.23       182.01        54.71 
TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.00        55.59        19.56        67.13       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MI TCGA-EE-A2MJ 
       19.76        61.51        47.28       103.27       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-ER-A19F 
       41.59         4.24        25.84         3.68        13.81        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A44A 
        6.41       131.08        61.05        44.05        79.99       160.60 
TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZP 
      216.92        28.08         7.76        53.52         9.70        74.73 
TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
      148.77        49.48        22.98       117.93        84.72        64.41 
TCGA-GN-A268 
       62.76 

  DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE 
                        3.22                         2.56 
  DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE 
                      345.96                       248.61 
  DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE 
                       47.38                        47.28 
[1] "3.2 - 346.0 (47.4)" "2.6 - 248.6 (47.3)"
                  TCGA-D3-A1Q1                   TCGA-D3-A1Q5 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A1Q7                   TCGA-D3-A1Q8 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-D3-A1Q9                   TCGA-D3-A2J6 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A2J8                   TCGA-D3-A2J9 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A2JD                   TCGA-D3-A2JK 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A3C6                   TCGA-D3-A3CE 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A3CF                   TCGA-D9-A148 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-D9-A1JW                   TCGA-D9-A1JX 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D9-A3Z1                   TCGA-D9-A3Z3 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-DA-A1HV                   TCGA-DA-A1HW 
  "DEL PEAK 16(13Q34) MUTATED"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-DA-A1HY                   TCGA-DA-A1I2 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-DA-A1IB                   TCGA-DA-A3F3 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-DA-A3F5                   TCGA-DA-A3F8 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A17X                   TCGA-EE-A17Z 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A181                   TCGA-EE-A183 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A185                   TCGA-EE-A20F 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A29C                   TCGA-EE-A29D 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A29E                   TCGA-EE-A29H 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A29L                   TCGA-EE-A29N 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A29P                   TCGA-EE-A29R 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A29S                   TCGA-EE-A29T 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A29X                   TCGA-EE-A2A0 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A1                   TCGA-EE-A2A2 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A6                   TCGA-EE-A2GB 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2GC                   TCGA-EE-A2GE 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A2GH                   TCGA-EE-A2GI 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A2GJ                   TCGA-EE-A2GK 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2GL                   TCGA-EE-A2GS 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2GT                   TCGA-EE-A2GU 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2M5                   TCGA-EE-A2M6 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2M7                   TCGA-EE-A2M8 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2MC                   TCGA-EE-A2MD 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2ME                   TCGA-EE-A2MG 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A2MH                   TCGA-EE-A2MI 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2MJ                   TCGA-EE-A2MK 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2ML                   TCGA-EE-A2MM 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2MN                   TCGA-EE-A2MP 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2MQ                   TCGA-EE-A2MR 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A2MS                   TCGA-EE-A2MT 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A3AA                   TCGA-EE-A3AB 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A3AC                   TCGA-EE-A3AD 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A3AE                   TCGA-EE-A3AF 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A3AH                   TCGA-ER-A19F 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-ER-A19J                   TCGA-ER-A19L 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-ER-A19M                   TCGA-ER-A19N 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-ER-A1A1                   TCGA-FR-A3YN 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-FR-A44A                   TCGA-FS-A1YW 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-FS-A1Z4                   TCGA-FS-A1Z7 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-FS-A1ZD                   TCGA-FS-A1ZG 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-FS-A1ZH                   TCGA-FS-A1ZJ 
  "DEL PEAK 16(13Q34) MUTATED"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-FS-A1ZP                   TCGA-FS-A1ZS 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-FS-A1ZW                   TCGA-FS-A4F9 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-FW-A3R5                   TCGA-GN-A264 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-GN-A265                   TCGA-GN-A267 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-GN-A268                   TCGA-GN-A26D 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-D3-A1Q1                   TCGA-D3-A1Q5 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A1Q7                   TCGA-D3-A1Q8 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-D3-A1Q9                   TCGA-D3-A2J6 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A2J8                   TCGA-D3-A2J9 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A2JD                   TCGA-D3-A2JK 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A3C6                   TCGA-D3-A3CE 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A3CF                   TCGA-D9-A148 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-D9-A1JW                   TCGA-D9-A1JX 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D9-A3Z1                   TCGA-D9-A3Z3 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-DA-A1HV                   TCGA-DA-A1HW 
  "DEL PEAK 16(13Q34) MUTATED"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-DA-A1HY                   TCGA-DA-A1I2 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-DA-A1IB                   TCGA-DA-A3F3 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-DA-A3F5                   TCGA-DA-A3F8 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A17X                   TCGA-EE-A17Z 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A181                   TCGA-EE-A183 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A185                   TCGA-EE-A20F 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A29C                   TCGA-EE-A29D 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A29E                   TCGA-EE-A29H 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A29L                   TCGA-EE-A29N 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A29P                   TCGA-EE-A29R 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A29S                   TCGA-EE-A29T 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A29X                   TCGA-EE-A2A0 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A1                   TCGA-EE-A2A2 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A6                   TCGA-EE-A2GB 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2GC                   TCGA-EE-A2GE 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A2GH                   TCGA-EE-A2GI 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A2GJ                   TCGA-EE-A2GK 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2GL                   TCGA-EE-A2GS 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2GT                   TCGA-EE-A2GU 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2M5                   TCGA-EE-A2M6 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2M7                   TCGA-EE-A2M8 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2MC                   TCGA-EE-A2MD 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2ME                   TCGA-EE-A2MG 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A2MH                   TCGA-EE-A2MI 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2MJ                   TCGA-EE-A2MK 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2ML                   TCGA-EE-A2MM 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2MN                   TCGA-EE-A2MP 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2MQ                   TCGA-EE-A2MR 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A2MS                   TCGA-EE-A2MT 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A3AA                   TCGA-EE-A3AB 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A3AC                   TCGA-EE-A3AD 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A3AE                   TCGA-EE-A3AF 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A3AH                   TCGA-ER-A19F 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-ER-A19J                   TCGA-ER-A19L 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-ER-A19M                   TCGA-ER-A19N 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-ER-A1A1                   TCGA-FR-A3YN 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-FR-A44A                   TCGA-FS-A1YW 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-FS-A1Z4                   TCGA-FS-A1Z7 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-FS-A1ZD                   TCGA-FS-A1ZG 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-FS-A1ZH                   TCGA-FS-A1ZJ 
  "DEL PEAK 16(13Q34) MUTATED"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-FS-A1ZP                   TCGA-FS-A1ZS 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-FS-A1ZW                   TCGA-FS-A4F9 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-FW-A3R5                   TCGA-GN-A264 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-GN-A265                   TCGA-GN-A267 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-GN-A268                   TCGA-GN-A26D 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-D3-A1Q1                   TCGA-D3-A1Q5 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A1Q7                   TCGA-D3-A1Q8 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-D3-A1Q9                   TCGA-D3-A2J6 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A2J8                   TCGA-D3-A2J9 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A2JD                   TCGA-D3-A2JK 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A3C6                   TCGA-D3-A3CE 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D3-A3CF                   TCGA-D9-A148 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-D9-A1JW                   TCGA-D9-A1JX 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-D9-A3Z1                   TCGA-D9-A3Z3 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-DA-A1HV                   TCGA-DA-A1HW 
  "DEL PEAK 16(13Q34) MUTATED"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-DA-A1HY                   TCGA-DA-A1I2 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-DA-A1IB                   TCGA-DA-A3F3 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-DA-A3F5                   TCGA-DA-A3F8 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A17X                   TCGA-EE-A17Z 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A181                   TCGA-EE-A183 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A185                   TCGA-EE-A20F 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A29C                   TCGA-EE-A29D 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A29E                   TCGA-EE-A29H 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A29L                   TCGA-EE-A29N 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A29P                   TCGA-EE-A29R 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A29S                   TCGA-EE-A29T 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A29X                   TCGA-EE-A2A0 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A1                   TCGA-EE-A2A2 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2A6                   TCGA-EE-A2GB 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2GC                   TCGA-EE-A2GE 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A2GH                   TCGA-EE-A2GI 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A2GJ                   TCGA-EE-A2GK 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2GL                   TCGA-EE-A2GS 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2GT                   TCGA-EE-A2GU 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2M5                   TCGA-EE-A2M6 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2M7                   TCGA-EE-A2M8 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2MC                   TCGA-EE-A2MD 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2ME                   TCGA-EE-A2MG 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A2MH                   TCGA-EE-A2MI 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2MJ                   TCGA-EE-A2MK 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2ML                   TCGA-EE-A2MM 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2MN                   TCGA-EE-A2MP 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A2MQ                   TCGA-EE-A2MR 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A2MS                   TCGA-EE-A2MT 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A3AA                   TCGA-EE-A3AB 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-EE-A3AC                   TCGA-EE-A3AD 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A3AE                   TCGA-EE-A3AF 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-EE-A3AH                   TCGA-ER-A19F 
  "DEL PEAK 16(13Q34) MUTATED" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-ER-A19J                   TCGA-ER-A19L 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-ER-A19M                   TCGA-ER-A19N 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-ER-A1A1                   TCGA-FR-A3YN 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-FR-A44A                   TCGA-FS-A1YW 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-FS-A1Z4                   TCGA-FS-A1Z7 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-FS-A1ZD                   TCGA-FS-A1ZG 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-FS-A1ZH                   TCGA-FS-A1ZJ 
  "DEL PEAK 16(13Q34) MUTATED"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-FS-A1ZP                   TCGA-FS-A1ZS 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-FS-A1ZW                   TCGA-FS-A4F9 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
                  TCGA-FW-A3R5                   TCGA-GN-A264 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-GN-A265                   TCGA-GN-A267 
"DEL PEAK 16(13Q34) WILD-TYPE" "DEL PEAK 16(13Q34) WILD-TYPE" 
                  TCGA-GN-A268                   TCGA-GN-A26D 
"DEL PEAK 16(13Q34) WILD-TYPE"   "DEL PEAK 16(13Q34) MUTATED" 
[1] "hr=" "1.4"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 16(13Q34) MUTATED      8   23
  DEL PEAK 16(13Q34) WILD-TYPE   27   54
        clus
vv       DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE
  FEMALE                          8                           27
  MALE                           23                           54
                              vv
clus                           M0 M1 M1B M1C
  DEL PEAK 16(13Q34) MUTATED   26  0   2   1
  DEL PEAK 16(13Q34) WILD-TYPE 72  1   0   0
D34V4, multiclass
     clus
vv    DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE
  M0                          26                           72
  M1                           0                            1
  M1B                          2                            0
  M1C                          1                            0
                              vv
clus                           N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 16(13Q34) MUTATED   17  0   0   4  0   1   2   1  4  1
  DEL PEAK 16(13Q34) WILD-TYPE 44  1   3   6  1   2   6   0  9  1
D34V5, multiclass
D34V6, continuous
                              vv
clus                           I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 16(13Q34) MUTATED             0       5        4        2        4
  DEL PEAK 16(13Q34) WILD-TYPE           1      10        3        9        9
                              vv
clus                           STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 16(13Q34) MUTATED           0         0         1         0
  DEL PEAK 16(13Q34) WILD-TYPE         5         5         1         4
                              vv
clus                           STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 16(13Q34) MUTATED            0          5          4        2
  DEL PEAK 16(13Q34) WILD-TYPE          3          5         14        1
D34V7, multiclass

Clustering(35) Variable = Del Peak 17(15q13.3) mutation analysis
D35V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 17(15Q13.3) MUTATED    9 15
  DEL PEAK 17(15Q13.3) WILD-TYPE 46 40
  DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE 
                            24                             86 
  DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE 
                            15                             40 
$`DEL PEAK 17(15Q13.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A3C6 TCGA-D9-A148 TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
       16.57        58.03       148.31         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-EE-A17Z TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A2M5 TCGA-EE-A2MC 
      117.17         8.65         2.56        56.42        21.67        61.51 
TCGA-EE-A2MD TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MT 
       47.28        16.96       204.62       144.76       167.87        41.59 
TCGA-EE-A3AB TCGA-FS-A1Z4 TCGA-FS-A1ZG TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A26D 
      122.73        28.08         9.70       117.93        64.41        39.58 

$`DEL PEAK 17(15Q13.3) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J8 
      112.54       121.22        28.08        31.59        43.40        65.49 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A1JW 
       23.77        11.87        12.10        60.23        24.53         2.70 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F5 
       11.34         3.22       176.55        23.44        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F 
       15.68        29.82        33.73        26.86         4.93        78.87 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29R 
       47.84        13.97        39.62        32.19        18.58        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
       55.89       345.96        17.92        46.82        78.94        24.43 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       58.75        47.54        43.23       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
       89.33        54.71        55.00        55.59        19.56        67.13 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MJ 
      129.24        28.80        19.76       103.27       103.17        96.23 
TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      203.01        47.54       248.61        43.23       103.56       136.44 
TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH 
        4.24        25.84         3.68        26.73        13.81       138.77 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       26.37         6.41       131.08        61.05        44.05        79.99 
TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZH 
       80.48       160.60       216.92         7.76        53.52        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZP TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 
       47.38        74.73       148.77        49.48        12.43        22.98 
TCGA-GN-A265 TCGA-GN-A268 
       84.72        62.76 

  DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE 
                          2.56                           2.70 
  DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE 
                        204.62                         345.96 
  DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE 
                        48.085                         47.100 
[1] "2.6 - 204.6 (48.1)" "2.7 - 346.0 (47.1)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "DEL PEAK 17(15Q13.3) MUTATED"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
  "DEL PEAK 17(15Q13.3) MUTATED"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "DEL PEAK 17(15Q13.3) MUTATED"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "DEL PEAK 17(15Q13.3) MUTATED"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
  "DEL PEAK 17(15Q13.3) MUTATED"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "DEL PEAK 17(15Q13.3) MUTATED"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "DEL PEAK 17(15Q13.3) MUTATED"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
  "DEL PEAK 17(15Q13.3) MUTATED"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "DEL PEAK 17(15Q13.3) MUTATED"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
  "DEL PEAK 17(15Q13.3) MUTATED" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"DEL PEAK 17(15Q13.3) WILD-TYPE" "DEL PEAK 17(15Q13.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK 17(15Q13.3) WILD-TYPE"   "DEL PEAK 17(15Q13.3) MUTATED" 
[1] "hr=" "1.3"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(15Q13.3) MUTATED     11   14
  DEL PEAK 17(15Q13.3) WILD-TYPE   24   63
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  FEMALE                           11                             24
  MALE                             14                             63
                                vv
clus                             M0 M1 M1B M1C
  DEL PEAK 17(15Q13.3) MUTATED   21  0   1   0
  DEL PEAK 17(15Q13.3) WILD-TYPE 77  1   1   1
D35V4, multiclass
     clus
vv    DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  M0                            21                             77
  M1                             0                              1
  M1B                            1                              1
  M1C                            0                              1
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 17(15Q13.3) MUTATED   13  0   1   1  0   0   3   0  4  1
  DEL PEAK 17(15Q13.3) WILD-TYPE 48  1   2   9  1   3   5   1  9  1
D35V5, multiclass
D35V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 17(15Q13.3) MUTATED             0       4        0        2        3
  DEL PEAK 17(15Q13.3) WILD-TYPE           1      11        7        9       10
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 17(15Q13.3) MUTATED           0         2         2         1
  DEL PEAK 17(15Q13.3) WILD-TYPE         5         3         0         3
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 17(15Q13.3) MUTATED            1          2          4        0
  DEL PEAK 17(15Q13.3) WILD-TYPE          2          8         14        3
D35V7, multiclass

Clustering(36) Variable = Del Peak 18(15q15.3) mutation analysis
D36V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 18(15Q15.3) MUTATED    6 19
  DEL PEAK 18(15Q15.3) WILD-TYPE 49 36
  DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE 
                            25                             85 
  DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE 
                            19                             36 
$`DEL PEAK 18(15Q15.3) MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A3C6 TCGA-D9-A148 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-EE-A17Z 
       16.57        58.03       148.31        48.89        36.03         8.65 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A2M5 TCGA-EE-A2MC 
       33.73        26.86         2.56        56.42        21.67        61.51 
TCGA-EE-A2MD TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A3AB 
       47.28        16.96       204.62       144.76       167.87       122.73 
TCGA-ER-A19J TCGA-FS-A1Z4 TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-GN-A264 TCGA-GN-A267 
        6.41        28.08         9.70        47.38       117.93        64.41 
TCGA-GN-A26D 
       39.58 

$`DEL PEAK 18(15Q15.3) WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J8 
      112.54       121.22        28.08        31.59        43.40        65.49 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A1JW 
       23.77        11.87        12.10        60.23        24.53         2.70 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1IB 
        6.38        11.34         3.22       117.17       176.55        23.44 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A185 TCGA-EE-A20F 
       10.49       215.44        15.68        29.82         4.93        78.87 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29R 
       47.84        13.97        39.62        32.19        18.58        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
       55.89       345.96        17.92        46.82        78.94        24.43 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       58.75        47.54        43.23       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
       89.33        54.71        55.00        55.59        19.56        67.13 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MJ 
      129.24        28.80        19.76       103.27       103.17        96.23 
TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      203.01        47.54       248.61        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
       41.59         4.24        25.84         3.68        26.73        13.81 
TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
      138.77        26.37       131.08        61.05        44.05        79.99 
TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZH 
       80.48       160.60       216.92         7.76        53.52        32.71 
TCGA-FS-A1ZP TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-FS-A4F9 TCGA-FW-A3R5 TCGA-GN-A265 
       74.73       148.77        49.48        12.43        22.98        84.72 
TCGA-GN-A268 
       62.76 

  DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE 
                          2.56                           2.70 
  DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE 
                        204.62                         345.96 
  DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE 
                         47.28                          47.54 
[1] "2.6 - 204.6 (47.3)" "2.7 - 346.0 (47.5)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "DEL PEAK 18(15Q15.3) MUTATED"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 18(15Q15.3) MUTATED"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
  "DEL PEAK 18(15Q15.3) MUTATED"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "DEL PEAK 18(15Q15.3) MUTATED"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "DEL PEAK 18(15Q15.3) MUTATED"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 18(15Q15.3) MUTATED"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
  "DEL PEAK 18(15Q15.3) MUTATED"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "DEL PEAK 18(15Q15.3) MUTATED"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
  "DEL PEAK 18(15Q15.3) MUTATED"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 18(15Q15.3) MUTATED"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
  "DEL PEAK 18(15Q15.3) MUTATED"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
  "DEL PEAK 18(15Q15.3) MUTATED"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
  "DEL PEAK 18(15Q15.3) MUTATED" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
"DEL PEAK 18(15Q15.3) WILD-TYPE" "DEL PEAK 18(15Q15.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK 18(15Q15.3) WILD-TYPE"   "DEL PEAK 18(15Q15.3) MUTATED" 
[1] "hr=" "1.9"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(15Q15.3) MUTATED     12   14
  DEL PEAK 18(15Q15.3) WILD-TYPE   23   63
        clus
vv       DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE
  FEMALE                           12                             23
  MALE                             14                             63
                                vv
clus                             M0 M1 M1B M1C
  DEL PEAK 18(15Q15.3) MUTATED   21  1   1   0
  DEL PEAK 18(15Q15.3) WILD-TYPE 77  0   1   1
D36V4, multiclass
     clus
vv    DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE
  M0                            21                             77
  M1                             1                              0
  M1B                            1                              1
  M1C                            0                              1
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 18(15Q15.3) MUTATED   15  0   1   1  0   0   3   0  4  0
  DEL PEAK 18(15Q15.3) WILD-TYPE 46  1   2   9  1   3   5   1  9  2
D36V5, multiclass
D36V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 18(15Q15.3) MUTATED             0       6        0        1        4
  DEL PEAK 18(15Q15.3) WILD-TYPE           1       9        7       10        9
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 18(15Q15.3) MUTATED           0         2         2         1
  DEL PEAK 18(15Q15.3) WILD-TYPE         5         3         0         3
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 18(15Q15.3) MUTATED            1          2          3        1
  DEL PEAK 18(15Q15.3) WILD-TYPE          2          8         15        2
D36V7, multiclass

Clustering(37) Variable = Del Peak 19(16p13.3) mutation analysis
D37V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(16P13.3) MUTATED    8 14
  DEL PEAK 19(16P13.3) WILD-TYPE 47 41
  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                            22                             88 
  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                            14                             41 
$`DEL PEAK 19(16P13.3) MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q9 TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-EE-A181 TCGA-EE-A29D 
      112.54        31.59        36.03       176.55        33.73        13.97 
TCGA-EE-A29L TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2GC TCGA-EE-A2GU TCGA-EE-A2M5 
        2.56        17.92        46.82        43.23        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MQ TCGA-EE-A3AB TCGA-FS-A1ZD 
      129.24       144.76       167.87        43.23       122.73        53.52 
TCGA-FS-A1ZW TCGA-FW-A3R5 TCGA-GN-A267 TCGA-GN-A26D 
       49.48        22.98        64.41        39.58 

$`DEL PEAK 19(16P13.3) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 
       16.57       121.22        28.08        43.40        65.49        23.77 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A148 
       11.87        12.10        58.03        60.23        24.53       148.31 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HY 
        2.70         6.38        11.34         3.22        48.89       117.17 
TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       23.44        10.49       215.44        15.68        29.82         8.65 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
       26.86         4.93        78.87        47.84        39.62        32.19 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A2A1 
       18.58        56.42        14.47        55.89       345.96        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       24.43        58.75        47.54       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M7 
       89.33        54.71        55.00        55.59        19.56        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MR 
      204.62        96.23       203.01        47.54       248.61       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
      136.44        41.59         4.24        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
       13.81       138.77        26.37         6.41       131.08        61.05 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z4 
       44.05        79.99        80.48       160.60       216.92        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZP TCGA-FS-A1ZS 
        7.76         9.70        32.71        47.38        74.73       148.77 
TCGA-FS-A4F9 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A268 
       12.43       117.93        84.72        62.76 

  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                          2.56                           2.70 
  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                        176.55                         345.96 
  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                        45.025                         47.460 
[1] "2.6 - 176.6 (45.0)" "2.7 - 346.0 (47.5)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "DEL PEAK 19(16P13.3) MUTATED"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 19(16P13.3) MUTATED"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "DEL PEAK 19(16P13.3) MUTATED"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 19(16P13.3) MUTATED"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "DEL PEAK 19(16P13.3) MUTATED"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 19(16P13.3) MUTATED"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
"DEL PEAK 19(16P13.3) WILD-TYPE" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
  "DEL PEAK 19(16P13.3) MUTATED" "DEL PEAK 19(16P13.3) WILD-TYPE" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK 19(16P13.3) WILD-TYPE"   "DEL PEAK 19(16P13.3) MUTATED" 
[1] "hr=" "1.3"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(16P13.3) MUTATED      9   13
  DEL PEAK 19(16P13.3) WILD-TYPE   26   64
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  FEMALE                            9                             26
  MALE                             13                             64
                                vv
clus                             M0 M1 M1B M1C
  DEL PEAK 19(16P13.3) MUTATED   20  0   0   0
  DEL PEAK 19(16P13.3) WILD-TYPE 78  1   2   1
D37V4, multiclass
     clus
vv    DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  M0                            20                             78
  M1                             0                              1
  M1B                            0                              2
  M1C                            0                              1
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 19(16P13.3) MUTATED   12  0   2   2  1   2   1   0  1  0
  DEL PEAK 19(16P13.3) WILD-TYPE 49  1   1   8  0   1   7   1 12  2
D37V5, multiclass
D37V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 19(16P13.3) MUTATED             1       3        1        1        2
  DEL PEAK 19(16P13.3) WILD-TYPE           0      12        6       10       11
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 19(16P13.3) MUTATED           2         1         1         1
  DEL PEAK 19(16P13.3) WILD-TYPE         3         4         1         3
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 19(16P13.3) MUTATED            2          3          3        0
  DEL PEAK 19(16P13.3) WILD-TYPE          1          7         15        3
D37V7, multiclass

Clustering(38) Variable = Del Peak 20(16q12.1) mutation analysis
D38V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(16Q12.1) MUTATED   16 22
  DEL PEAK 20(16Q12.1) WILD-TYPE 39 33
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                            38                             72 
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                            22                             33 
$`DEL PEAK 20(16Q12.1) MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A2J6 TCGA-D9-A148 TCGA-D9-A3Z3 TCGA-DA-A1HW 
      112.54       121.22        43.40       148.31         3.22        36.03 
TCGA-DA-A1I2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A185 
      176.55       215.44        15.68         8.65        33.73         4.93 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29X 
       47.84        13.97         2.56        18.58        56.42        17.92 
TCGA-EE-A2A0 TCGA-EE-A2GC TCGA-EE-A2M5 TCGA-EE-A2MD TCGA-EE-A2MJ TCGA-EE-A2MK 
       46.82        43.23        21.67        47.28        96.23       144.76 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A3AB TCGA-EE-A3AE 
      167.87        47.54        43.23       136.44       122.73        26.73 
TCGA-EE-A3AF TCGA-ER-A19N TCGA-FS-A1ZP TCGA-FS-A1ZW TCGA-FW-A3R5 TCGA-GN-A264 
       13.81        44.05        74.73        49.48        22.98       117.93 
TCGA-GN-A267 TCGA-GN-A26D 
       64.41        39.58 

$`DEL PEAK 20(16Q12.1) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD 
       16.57        28.08        31.59        65.49        23.77        11.87 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D9-A1JW TCGA-D9-A1JX 
       12.10        58.03        60.23        24.53         2.70         6.38 
TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-EE-A17X 
       11.34        48.89       117.17        23.44        10.49        29.82 
TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29R TCGA-EE-A29S 
       26.86        78.87        39.62        32.19        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GE 
      345.96        78.94        24.43        58.75        47.54       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS 
      182.01        22.55        89.33        54.71        55.00        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       19.56        67.13       129.24        28.80        19.76        61.51 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2ML TCGA-EE-A2MP 
      103.27       103.17        16.96       204.62       203.01       248.61 
TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AH 
      103.56        41.59         4.24        25.84         3.68       138.77 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-FR-A3YN 
       26.37         6.41       131.08        61.05        79.99        80.48 
TCGA-FR-A44A TCGA-FS-A1YW TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZG 
      160.60       216.92        28.08         7.76        53.52         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZS TCGA-FS-A4F9 TCGA-GN-A265 TCGA-GN-A268 
       32.71        47.38       148.77        12.43        84.72        62.76 

  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                          2.56                           2.70 
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                        215.44                         345.96 
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                        45.435                         48.215 
[1] "2.6 - 215.4 (45.4)" "2.7 - 346.0 (48.2)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
[1] "hr=" "1.3"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(16Q12.1) MUTATED     13   25
  DEL PEAK 20(16Q12.1) WILD-TYPE   22   52
        clus
vv       DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE
  FEMALE                           13                             22
  MALE                             25                             52
                                vv
clus                             M0 M1 M1B M1C
  DEL PEAK 20(16Q12.1) MUTATED   32  0   1   0
  DEL PEAK 20(16Q12.1) WILD-TYPE 66  1   1   1
D38V4, multiclass
     clus
vv    DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE
  M0                            32                             66
  M1                             0                              1
  M1B                            1                              1
  M1C                            0                              1
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 20(16Q12.1) MUTATED   21  0   2   3  1   1   2   0  4  0
  DEL PEAK 20(16Q12.1) WILD-TYPE 40  1   1   7  0   2   6   1  9  2
D38V5, multiclass
D38V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 20(16Q12.1) MUTATED             1       3        1        3        6
  DEL PEAK 20(16Q12.1) WILD-TYPE           0      12        6        8        7
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 20(16Q12.1) MUTATED           1         3         2         1
  DEL PEAK 20(16Q12.1) WILD-TYPE         4         2         0         3
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 20(16Q12.1) MUTATED            2          4          5        0
  DEL PEAK 20(16Q12.1) WILD-TYPE          1          6         13        3
D38V7, multiclass

Clustering(39) Variable = Del Peak 21(16q24.2) mutation analysis
D39V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 21(16Q24.2) MUTATED   15 27
  DEL PEAK 21(16Q24.2) WILD-TYPE 40 28
  DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE 
                            42                             68 
  DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE 
                            27                             28 
$`DEL PEAK 21(16Q24.2) MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A3CE TCGA-D9-A148 
      112.54       121.22        31.59        43.40        60.23       148.31 
TCGA-D9-A1JW TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A3F8 TCGA-EE-A17Z 
        2.70         3.22        36.03       176.55        15.68         8.65 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29P 
       33.73        26.86         4.93        13.97        32.19        56.42 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2GC TCGA-EE-A2M5 TCGA-EE-A2MD TCGA-EE-A2MG 
       17.92        46.82        43.23        21.67        47.28       103.17 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MQ TCGA-EE-A3AB 
      204.62        96.23       144.76       167.87        43.23       122.73 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-ER-A19F TCGA-ER-A19N TCGA-FS-A1ZJ TCGA-FS-A1ZP 
       26.73        13.81        26.37        44.05        47.38        74.73 
TCGA-FS-A1ZW TCGA-FW-A3R5 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       49.48        22.98       117.93        64.41        62.76        39.58 

$`DEL PEAK 21(16Q24.2) WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK 
       16.57        28.08        65.49        23.77        11.87        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1HY 
       58.03        24.53         6.38        11.34        48.89       117.17 
TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A20F TCGA-EE-A29C 
       23.44        10.49       215.44        29.82        78.87        47.84 
TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       39.62         2.56        18.58        14.47        55.89       345.96 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GE TCGA-EE-A2GH 
       78.94        24.43        58.75        47.54       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2GT 
       22.55        89.33        54.71        55.00        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME 
       67.13       129.24        28.80        19.76        61.51       103.27 
TCGA-EE-A2MH TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A2MS 
       16.96       203.01        47.54       248.61       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AH TCGA-ER-A19J 
       41.59         4.24        25.84         3.68       138.77         6.41 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1YW 
      131.08        61.05        79.99        80.48       160.60       216.92 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZS 
       28.08         7.76        53.52         9.70        32.71       148.77 
TCGA-FS-A4F9 TCGA-GN-A265 
       12.43        84.72 

  DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE 
                          2.70                           2.56 
  DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE 
                        204.62                         345.96 
  DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE 
                        43.725                         48.365 
[1] "2.7 - 204.6 (43.7)" "2.6 - 346.0 (48.4)"
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-D3-A1Q1                     TCGA-D3-A1Q5 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-D3-A1Q7                     TCGA-D3-A1Q8 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-D3-A1Q9                     TCGA-D3-A2J6 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-D3-A2J8                     TCGA-D3-A2J9 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-D3-A2JD                     TCGA-D3-A2JK 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-D3-A3C6                     TCGA-D3-A3CE 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-D3-A3CF                     TCGA-D9-A148 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-D9-A1JW                     TCGA-D9-A1JX 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-D9-A3Z1                     TCGA-D9-A3Z3 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-DA-A1HV                     TCGA-DA-A1HW 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-DA-A1HY                     TCGA-DA-A1I2 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-DA-A1IB                     TCGA-DA-A3F3 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-DA-A3F5                     TCGA-DA-A3F8 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A17X                     TCGA-EE-A17Z 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A181                     TCGA-EE-A183 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A185                     TCGA-EE-A20F 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A29C                     TCGA-EE-A29D 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A29E                     TCGA-EE-A29H 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A29L                     TCGA-EE-A29N 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A29P                     TCGA-EE-A29R 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A29S                     TCGA-EE-A29T 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A29X                     TCGA-EE-A2A0 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2A1                     TCGA-EE-A2A2 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2A6                     TCGA-EE-A2GB 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GC                     TCGA-EE-A2GE 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GH                     TCGA-EE-A2GI 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GJ                     TCGA-EE-A2GK 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GL                     TCGA-EE-A2GS 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2GT                     TCGA-EE-A2GU 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2M5                     TCGA-EE-A2M6 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2M7                     TCGA-EE-A2M8 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2MC                     TCGA-EE-A2MD 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2ME                     TCGA-EE-A2MG 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2MH                     TCGA-EE-A2MI 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2MJ                     TCGA-EE-A2MK 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2ML                     TCGA-EE-A2MM 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A2MN                     TCGA-EE-A2MP 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2MQ                     TCGA-EE-A2MR 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A2MS                     TCGA-EE-A2MT 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A3AA                     TCGA-EE-A3AB 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A3AC                     TCGA-EE-A3AD 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-EE-A3AE                     TCGA-EE-A3AF 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-EE-A3AH                     TCGA-ER-A19F 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-ER-A19J                     TCGA-ER-A19L 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-ER-A19M                     TCGA-ER-A19N 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-ER-A1A1                     TCGA-FR-A3YN 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FR-A44A                     TCGA-FS-A1YW 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FS-A1Z4                     TCGA-FS-A1Z7 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FS-A1ZD                     TCGA-FS-A1ZG 
"DEL PEAK 21(16Q24.2) WILD-TYPE" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FS-A1ZH                     TCGA-FS-A1ZJ 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-FS-A1ZP                     TCGA-FS-A1ZS 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FS-A1ZW                     TCGA-FS-A4F9 
  "DEL PEAK 21(16Q24.2) MUTATED" "DEL PEAK 21(16Q24.2) WILD-TYPE" 
                    TCGA-FW-A3R5                     TCGA-GN-A264 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-GN-A265                     TCGA-GN-A267 
"DEL PEAK 21(16Q24.2) WILD-TYPE"   "DEL PEAK 21(16Q24.2) MUTATED" 
                    TCGA-GN-A268                     TCGA-GN-A26D 
  "DEL PEAK 21(16Q24.2) MUTATED"   "DEL PEAK 21(16Q24.2) MUTATED" 
[1] "hr=" "1.7"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(16Q24.2) MUTATED     17   26
  DEL PEAK 21(16Q24.2) WILD-TYPE   18   51
        clus
vv       DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE
  FEMALE                           17                             18
  MALE                             26                             51
                                vv
clus                             M0 M1 M1B M1C
  DEL PEAK 21(16Q24.2) MUTATED   37  0   1   0
  DEL PEAK 21(16Q24.2) WILD-TYPE 61  1   1   1
D39V4, multiclass
     clus
vv    DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE
  M0                            37                             61
  M1                             0                              1
  M1B                            1                              1
  M1C                            0                              1
                                vv
clus                             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEL PEAK 21(16Q24.2) MUTATED   24  0   2   5  1   3   2   0  2  0
  DEL PEAK 21(16Q24.2) WILD-TYPE 37  1   1   5  0   0   6   1 11  2
D39V5, multiclass
D39V6, continuous
                                vv
clus                             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II
  DEL PEAK 21(16Q24.2) MUTATED             1       5        2        2        5
  DEL PEAK 21(16Q24.2) WILD-TYPE           0      10        5        9        8
                                vv
clus                             STAGE IIA STAGE IIB STAGE IIC STAGE III
  DEL PEAK 21(16Q24.2) MUTATED           1         5         2         2
  DEL PEAK 21(16Q24.2) WILD-TYPE         4         0         0         2
                                vv
clus                             STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  DEL PEAK 21(16Q24.2) MUTATED            2          6          3        0
  DEL PEAK 21(16Q24.2) WILD-TYPE          1          4         15        3
D39V7, multiclass
                   V1.D                      V2                      V3 
        "Time to Death"                   "AGE"                "GENDER" 
                     V4                      V5                      V6 
   "DISTANT.METASTASIS" "LYMPH.NODE.METASTASIS"       "TUMOR.STAGECODE" 
                     V7 
"NEOPLASM.DISEASESTAGE" 
> q(save="no")
