		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p12)	32 (29%)	80	8.506e-05	0.0261	0.22547	1	0.81176	1	0.11348	1	0.020422	1	0.18491	1	0.29679	1	0.15771	1
Amp Peak  2(1q44)	54 (48%)	58	0.015447	1	0.41748	1	0.64266	1	0.91938	1	0.060994	1	0.27834	1	0.056765	1	0.52908	1
Amp Peak  3(3p13)	24 (21%)	88	0.016752	1	0.19177	1	0.10083	1	0.037683	1	0.22915	1	0.0075435	1	0.40589	1	0.32454	1
Amp Peak  4(5p15.33)	32 (29%)	80	0.012515	1	0.056513	1	0.77953	1	0.74179	1	0.92983	1	0.58379	1	0.030378	1	0.71661	1
Amp Peak  5(5q35.3)	13 (12%)	99	0.00113	0.341	0.033041	1	0.21535	1	0.77397	1	0.28821	1	0.42239	1	0.21631	1	0.89454	1
Amp Peak  6(6p25.1)	61 (54%)	51	0.0061754	1	0.0016332	0.483	0.28596	1	0.2459	1	0.97025	1	0.33588	1	0.36022	1	0.031976	1
Amp Peak  7(6q12)	23 (21%)	89	0.29205	1	0.54533	1	0.49483	1	0.97948	1	0.046916	1	0.17958	1	0.05726	1	0.53577	1
Amp Peak  8(7p22.1)	60 (54%)	52	0.0021208	0.621	0.5236	1	0.9714	1	0.77032	1	0.12712	1	0.70291	1	0.70689	1	0.6619	1
Amp Peak  9(7q34)	62 (55%)	50	0.0013575	0.403	0.43771	1	0.34009	1	0.95104	1	0.76052	1	0.29503	1	0.27884	1	0.52395	1
Amp Peak 10(8q11.21)	41 (37%)	71	1.3026e-05	0.00404	0.0022268	0.65	0.41677	1	0.21767	1	0.19129	1	0.031738	1	0.071539	1	0.071103	1
Amp Peak 11(8q24.21)	50 (45%)	62	0.00034259	0.104	0.012244	1	0.73747	1	0.39862	1	0.046	1	0.1732	1	0.31681	1	0.52395	1
Amp Peak 12(9p24.1)	5 (4%)	107	0.11628	1	0.51078	1	0.67617	1	0.53569	1	0.36455	1	0.067453	1	1	1	0.60608	1
Amp Peak 13(11q13.3)	19 (17%)	93	0.1462	1	0.36145	1	0.16291	1	0.97137	1	0.11351	1	0.061678	1	1	1	0.52994	1
Amp Peak 14(12q14.1)	20 (18%)	92	0.002753	0.801	0.12321	1	0.11922	1	0.23841	1	0.15706	1	0.39127	1	0.77284	1	0.36641	1
Amp Peak 15(15q26.2)	43 (38%)	69	0.17631	1	0.65493	1	0.75161	1	0.5106	1	0.56578	1	0.055898	1	0.5853	1	0.64671	1
Amp Peak 16(17q25.3)	44 (39%)	68	0.0012539	0.375	0.044095	1	0.95629	1	0.55385	1	0.48624	1	0.080868	1	0.0011644	0.35	0.86895	1
Amp Peak 17(19p13.2)	19 (17%)	93	0.056048	1	0.010978	1	0.70063	1	0.096022	1	0.044412	1	0.36892	1	0.52038	1	0.23758	1
Amp Peak 18(22q13.2)	48 (43%)	64	0.23365	1	0.80564	1	0.85042	1	1	1	0.54254	1	0.24846	1	0.54254	1	0.95573	1
Del Peak  1(1p36.31)	27 (24%)	85	0.088732	1	0.10217	1	0.23454	1	0.38547	1	0.0041344	1	0.065233	1	0.37801	1	0.42365	1
Del Peak  2(1p21.3)	30 (27%)	82	0.13996	1	0.016499	1	0.36	1	0.16362	1	0.00032652	0.0993	0.001952	0.574	0.64641	1	0.89126	1
Del Peak  3(2q37.3)	21 (19%)	91	0.53145	1	0.17079	1	0.56182	1	0.41311	1	0.10044	1	0.19216	1	0.34757	1	0.050792	1
Del Peak  4(3p24.3)	17 (15%)	95	0.41089	1	0.42329	1	0.18277	1	0.065415	1	0.59467	1	0.14613	1	0.38823	1	0.83716	1
Del Peak  5(4q34.3)	23 (21%)	89	0.054169	1	0.30757	1	0.53162	1	0.79745	1	0.35067	1	0.9757	1	0.47034	1	0.32454	1
Del Peak  6(5q31.3)	45 (40%)	67	0.063565	1	0.094274	1	0.64629	1	0.5106	1	0.20834	1	0.76144	1	0.21174	1	0.25026	1
Del Peak  7(6q25.3)	67 (60%)	45	2.8483e-09	8.89e-07	0.0055749	1	0.14505	1	0.33496	1	0.026066	1	0.45375	1	0.10175	1	0.718	1
Del Peak  8(6q26)	63 (56%)	49	2.4412e-08	7.59e-06	0.0238	1	0.26884	1	0.28775	1	0.068865	1	0.19286	1	0.35599	1	0.91211	1
Del Peak  9(8p23.3)	29 (26%)	83	0.10826	1	0.080781	1	0.073505	1	0.063419	1	0.55895	1	0.4506	1	0.46278	1	0.58835	1
Del Peak 10(9p23)	75 (67%)	37	1.3211e-05	0.00408	0.27685	1	0.6619	1	0.67722	1	0.002826	0.82	0.0756	1	0.7822	1	0.3773	1
Del Peak 11(9p21.3)	86 (77%)	26	0.00015513	0.0475	0.028837	1	0.084794	1	0.81111	1	2.3858e-05	0.00735	0.0016878	0.498	0.30836	1	0.22857	1
Del Peak 12(10p15.3)	55 (49%)	57	0.0011752	0.353	0.12057	1	0.44056	1	0.23337	1	0.061352	1	0.048038	1	0.30055	1	0.69525	1
Del Peak 13(10q23.31)	64 (57%)	48	0.10658	1	0.15663	1	0.54347	1	0.12222	1	0.013084	1	0.0044579	1	0.005365	1	0.16541	1
Del Peak 14(11q23.1)	61 (54%)	51	0.00023618	0.072	0.17636	1	0.51618	1	0.78725	1	0.040225	1	0.0012673	0.378	0.010219	1	0.48199	1
Del Peak 15(12q24.33)	21 (19%)	91	0.60954	1	0.19731	1	0.41746	1	0.7642	1	0.61615	1	0.25205	1	0.81386	1	1	1
Del Peak 16(13q34)	31 (28%)	81	0.30629	1	0.8178	1	0.63919	1	0.9647	1	0.89435	1	0.44425	1	0.02853	1	0.26517	1
Del Peak 17(15q13.3)	25 (22%)	87	0.02801	1	0.49561	1	0.2934	1	0.59903	1	0.31122	1	0.52576	1	0.80253	1	1	1
Del Peak 18(15q15.3)	26 (23%)	86	0.093326	1	0.73145	1	0.81176	1	0.83702	1	0.81172	1	0.98872	1	0.43811	1	0.4416	1
Del Peak 19(16p13.3)	22 (20%)	90	0.20964	1	0.14156	1	0.88987	1	0.6296	1	0.037546	1	0.19725	1	0.1104	1	0.8103	1
Del Peak 20(16q12.1)	38 (34%)	74	0.1061	1	0.15358	1	0.97949	1	0.66161	1	0.15765	1	0.32734	1	0.25516	1	0.15837	1
Del Peak 21(16q24.2)	43 (38%)	69	0.75037	1	0.25294	1	0.38246	1	0.10001	1	0.096782	1	0.25239	1	0.081804	1	0.4219	1
