
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/399248/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/SKCM-Regional_LN/3157616/1.GDAC_mergedClustering.Finished/SKCM-Regional_LN.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SKCM-Regional_LN", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"                  "-oT=SKCM-Regional_LN"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=116, in cluster file=112, common to both=112
[1]  39 112
[1] "Amp Peak  1(1p12) mutation analysis"
[1] 3
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         32                          80 
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         32                          80 
[1] "Amp Peak  2(1q44) mutation analysis"
[1] 3
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                         54                          58 
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                         54                          58 
[1] "Amp Peak  3(3p13) mutation analysis"
[1] 3
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                         24                          88 
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                         24                          88 
[1] "Amp Peak  4(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                            32                             80 
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                            32                             80 
[1] "Amp Peak  5(5q35.3) mutation analysis"
[1] 3
  AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE 
                           13                            99 
  AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE 
                           13                            99 
[1] "Amp Peak  6(6p25.1) mutation analysis"
[1] 3
  AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE 
                           61                            51 
  AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE 
                           61                            51 
[1] "Amp Peak  7(6q12) mutation analysis"
[1] 3
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         23                          89 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         23                          89 
[1] "Amp Peak  8(7p22.1) mutation analysis"
[1] 3
  AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE 
                           60                            52 
  AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE 
                           60                            52 
[1] "Amp Peak  9(7q34) mutation analysis"
[1] 3
  AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE 
                         62                          50 
  AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE 
                         62                          50 
[1] "Amp Peak 10(8q11.21) mutation analysis"
[1] 3
  AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE 
                            41                             71 
  AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE 
                            41                             71 
[1] "Amp Peak 11(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            50                             62 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            50                             62 
[1] "Amp Peak 12(9p24.1) mutation analysis"
[1] 3
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                            5                           107 
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                            5                           107 
[1] "Amp Peak 13(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                            19                             93 
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                            19                             93 
[1] "Amp Peak 14(12q14.1) mutation analysis"
[1] 3
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                            20                             92 
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                            20                             92 
[1] "Amp Peak 15(15q26.2) mutation analysis"
[1] 3
  AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE 
                            43                             69 
  AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE 
                            43                             69 
[1] "Amp Peak 16(17q25.3) mutation analysis"
[1] 3
  AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE 
                            44                             68 
  AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE 
                            44                             68 
[1] "Amp Peak 17(19p13.2) mutation analysis"
[1] 3
  AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE 
                            19                             93 
  AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE 
                            19                             93 
[1] "Amp Peak 18(22q13.2) mutation analysis"
[1] 3
  AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE 
                            48                             64 
  AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE 
                            48                             64 
[1] "Del Peak  1(1p36.31) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            27                             85 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            27                             85 
[1] "Del Peak  2(1p21.3) mutation analysis"
[1] 3
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                           30                            82 
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                           30                            82 
[1] "Del Peak  3(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           21                            91 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           21                            91 
[1] "Del Peak  4(3p24.3) mutation analysis"
[1] 3
  DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE 
                           17                            95 
  DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE 
                           17                            95 
[1] "Del Peak  5(4q34.3) mutation analysis"
[1] 3
  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                           23                            89 
  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                           23                            89 
[1] "Del Peak  6(5q31.3) mutation analysis"
[1] 3
  DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE 
                           45                            67 
  DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE 
                           45                            67 
[1] "Del Peak  7(6q25.3) mutation analysis"
[1] 3
  DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE 
                           67                            45 
  DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE 
                           67                            45 
[1] "Del Peak  8(6q26) mutation analysis"
[1] 3
  DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE 
                         63                          49 
  DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE 
                         63                          49 
[1] "Del Peak  9(8p23.3) mutation analysis"
[1] 3
  DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE 
                           29                            83 
  DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE 
                           29                            83 
[1] "Del Peak 10(9p23) mutation analysis"
[1] 3
  DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE 
                         75                          37 
  DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE 
                         75                          37 
[1] "Del Peak 11(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           86                            26 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           86                            26 
[1] "Del Peak 12(10p15.3) mutation analysis"
[1] 3
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                            55                             57 
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                            55                             57 
[1] "Del Peak 13(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             64                              48 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             64                              48 
[1] "Del Peak 14(11q23.1) mutation analysis"
[1] 3
  DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE 
                            61                             51 
  DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE 
                            61                             51 
[1] "Del Peak 15(12q24.33) mutation analysis"
[1] 3
  DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE 
                             21                              91 
  DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE 
                             21                              91 
[1] "Del Peak 16(13q34) mutation analysis"
[1] 3
  DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE 
                          31                           81 
  DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE 
                          31                           81 
[1] "Del Peak 17(15q13.3) mutation analysis"
[1] 3
  DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE 
                            25                             87 
  DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE 
                            25                             87 
[1] "Del Peak 18(15q15.3) mutation analysis"
[1] 3
  DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE 
                            26                             86 
  DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE 
                            26                             86 
[1] "Del Peak 19(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                            22                             90 
  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                            22                             90 
[1] "Del Peak 20(16q12.1) mutation analysis"
[1] 3
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                            38                             74 
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                            38                             74 
[1] "Del Peak 21(16q24.2) mutation analysis"
[1] 3
  DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE 
                            43                             69 
  DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE 
                            43                             69 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 8 rows and 112 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 112 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p12) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        15                          15
  CLUS_2                         6                          12
  CLUS_3                        11                          27
  CLUS_4                         0                          26
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                         7                          11
  CLUS_2                         9                          31
  CLUS_3                         5                          21
  CLUS_4                        11                          17
D1V3, multiclass
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                         0                          12
  CLUS_2                         6                          16
  CLUS_3                        11                          23
  CLUS_4                         4                           8
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                         8                          34
  CLUS_2                         5                          22
  CLUS_3                        19                          24
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                         7                          11
  CLUS_2                         7                          22
  CLUS_3                         6                          28
  CLUS_4                        12                          19
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        15                          27
  CLUS_2                         4                          19
  CLUS_3                        12                          33
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                         1                          10
  CLUS_2                         5                          20
  CLUS_3                        25                          49

Clustering(2) Variable = Amp Peak  2(1q44) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        22                           8
  CLUS_2                         7                          11
  CLUS_3                        15                          23
  CLUS_4                        10                          16
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        10                           8
  CLUS_2                        15                          25
  CLUS_3                        14                          12
  CLUS_4                        15                          13
D2V3, multiclass
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         6                           6
  CLUS_2                         9                          13
  CLUS_3                        17                          17
  CLUS_4                         6                           6
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        21                          21
  CLUS_2                         8                          19
  CLUS_3                        25                          18
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         8                          10
  CLUS_2                        10                          19
  CLUS_3                        18                          16
  CLUS_4                        18                          13
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        22                          20
  CLUS_2                        15                           8
  CLUS_3                        16                          29
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         7                           4
  CLUS_2                        11                          14
  CLUS_3                        35                          39

Clustering(3) Variable = Amp Peak  3(3p13) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         2                          28
  CLUS_2                         8                          10
  CLUS_3                         7                          31
  CLUS_4                         7                          19
D3V2, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         3                          15
  CLUS_2                         9                          31
  CLUS_3                         9                          17
  CLUS_4                         3                          25
D3V3, multiclass
D3V4, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         3                           9
  CLUS_2                         1                          21
  CLUS_3                        12                          22
  CLUS_4                         4                           8
D3V5, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                        12                          30
  CLUS_2                         3                          24
  CLUS_3                         9                          34
D3V6, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         8                          10
  CLUS_2                         2                          27
  CLUS_3                        10                          24
  CLUS_4                         4                          27
D3V7, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         7                          35
  CLUS_2                         7                          16
  CLUS_3                         9                          36
D3V8, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         2                           9
  CLUS_2                         8                          17
  CLUS_3                        13                          61

Clustering(4) Variable = Amp Peak  4(5p15.33) mutation analysis
D4V1, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                           10                              8
  CLUS_3                            5                             33
  CLUS_4                            8                             18
D4V2, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                            8                             32
  CLUS_3                           13                             13
  CLUS_4                            6                             22
D4V3, multiclass
D4V4, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                            2                             10
  CLUS_2                            5                             17
  CLUS_3                           11                             23
  CLUS_4                            4                              8
D4V5, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                            7                             20
  CLUS_3                           12                             31
D4V6, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                            6                             23
  CLUS_3                           12                             22
  CLUS_4                            8                             23
D4V7, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           14                             28
  CLUS_2                           10                             13
  CLUS_3                            7                             38
D4V8, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            6                             19
  CLUS_3                           21                             53

Clustering(5) Variable = Amp Peak  5(5q35.3) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                           2                            16
  CLUS_3                           0                            38
  CLUS_4                           8                            18
D5V2, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                           5                            13
  CLUS_2                           1                            39
  CLUS_3                           3                            23
  CLUS_4                           4                            24
D5V3, multiclass
D5V4, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                           1                            11
  CLUS_2                           2                            20
  CLUS_3                           6                            28
  CLUS_4                           1                            11
D5V5, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                           5                            37
  CLUS_2                           1                            26
  CLUS_3                           7                            36
D5V6, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                           2                            16
  CLUS_2                           1                            28
  CLUS_3                           5                            29
  CLUS_4                           5                            26
D5V7, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                           2                            21
  CLUS_3                           3                            42
D5V8, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           2                            23
  CLUS_3                          10                            64

Clustering(6) Variable = Amp Peak  6(6p25.1) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE
  CLUS_1                          24                             6
  CLUS_2                           7                            11
  CLUS_3                          16                            22
  CLUS_4                          14                            12
D6V2, multiclass
        clus
vv       AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE
  CLUS_1                           6                            12
  CLUS_2                          16                            24
  CLUS_3                          21                             5
  CLUS_4                          18                            10
D6V3, multiclass
D6V4, multiclass
        clus
vv       AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE
  CLUS_1                           5                             7
  CLUS_2                          15                             7
  CLUS_3                          22                            12
  CLUS_4                           5                             7
D6V5, multiclass
        clus
vv       AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE
  CLUS_1                          23                            19
  CLUS_2                          14                            13
  CLUS_3                          24                            19
D6V6, multiclass
        clus
vv       AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE
  CLUS_1                          10                             8
  CLUS_2                          14                            15
  CLUS_3                          16                            18
  CLUS_4                          21                            10
D6V7, multiclass
        clus
vv       AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE
  CLUS_1                          26                            16
  CLUS_2                          13                            10
  CLUS_3                          21                            24
D6V8, multiclass
        clus
vv       AMP PEAK  6(6P25.1) MUTATED AMP PEAK  6(6P25.1) WILD-TYPE
  CLUS_1                           6                             5
  CLUS_2                           8                            17
  CLUS_3                          46                            28

Clustering(7) Variable = Amp Peak  7(6q12) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                         8                          22
  CLUS_2                         4                          14
  CLUS_3                         9                          29
  CLUS_4                         2                          24
D7V2, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                         4                          14
  CLUS_2                        11                          29
  CLUS_3                         4                          22
  CLUS_4                         4                          24
D7V3, multiclass
D7V4, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                         3                           9
  CLUS_2                         5                          17
  CLUS_3                         7                          27
  CLUS_4                         2                          10
D7V5, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                         5                          37
  CLUS_2                        10                          17
  CLUS_3                         8                          35
D7V6, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                         5                          13
  CLUS_2                         8                          21
  CLUS_3                         3                          31
  CLUS_4                         7                          24
D7V7, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                        12                          30
  CLUS_2                         1                          22
  CLUS_3                        10                          35
D7V8, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                         1                          10
  CLUS_2                         4                          21
  CLUS_3                        18                          56

Clustering(8) Variable = Amp Peak  8(7p22.1) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                          18                            12
  CLUS_2                          16                             2
  CLUS_3                          15                            23
  CLUS_4                          11                            15
D8V2, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                          10                             8
  CLUS_2                          19                            21
  CLUS_3                          17                             9
  CLUS_4                          14                            14
D8V3, multiclass
D8V4, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                           6                             6
  CLUS_2                          14                             8
  CLUS_3                          18                            16
  CLUS_4                           8                             4
D8V5, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                          26                            16
  CLUS_2                          10                            17
  CLUS_3                          24                            19
D8V6, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                          11                             7
  CLUS_2                          14                            15
  CLUS_3                          20                            14
  CLUS_4                          15                            16
D8V7, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                          24                            18
  CLUS_2                          13                            10
  CLUS_3                          22                            23
D8V8, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                           7                             4
  CLUS_2                          12                            13
  CLUS_3                          40                            34

Clustering(9) Variable = Amp Peak  9(7q34) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE
  CLUS_1                        13                          17
  CLUS_2                        17                           1
  CLUS_3                        18                          20
  CLUS_4                        14                          12
D9V2, multiclass
        clus
vv       AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE
  CLUS_1                        12                           6
  CLUS_2                        23                          17
  CLUS_3                        15                          11
  CLUS_4                        12                          16
D9V3, multiclass
D9V4, multiclass
        clus
vv       AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE
  CLUS_1                         7                           5
  CLUS_2                        12                          10
  CLUS_3                        19                          15
  CLUS_4                         8                           4
D9V5, multiclass
        clus
vv       AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE
  CLUS_1                        25                          17
  CLUS_2                        15                          12
  CLUS_3                        22                          21
D9V6, multiclass
        clus
vv       AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE
  CLUS_1                        11                           7
  CLUS_2                        16                          13
  CLUS_3                        22                          12
  CLUS_4                        13                          18
D9V7, multiclass
        clus
vv       AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE
  CLUS_1                        23                          19
  CLUS_2                        16                           7
  CLUS_3                        22                          23
D9V8, multiclass
        clus
vv       AMP PEAK  9(7Q34) MUTATED AMP PEAK  9(7Q34) WILD-TYPE
  CLUS_1                         8                           3
  CLUS_2                        14                          11
  CLUS_3                        39                          35

Clustering(10) Variable = Amp Peak 10(8q11.21) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                           16                              2
  CLUS_3                            9                             29
  CLUS_4                            7                             19
D10V2, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                           12                              6
  CLUS_2                           13                             27
  CLUS_3                           12                             14
  CLUS_4                            4                             24
D10V3, multiclass
D10V4, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                            3                              9
  CLUS_2                           10                             12
  CLUS_3                           10                             24
  CLUS_4                            7                              5
D10V5, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                           20                             22
  CLUS_2                            8                             19
  CLUS_3                           13                             30
D10V6, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                            6                             23
  CLUS_3                           19                             15
  CLUS_4                           10                             21
D10V7, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                            7                             16
  CLUS_3                           22                             23
D10V8, multiclass
        clus
vv       AMP PEAK 10(8Q11.21) MUTATED AMP PEAK 10(8Q11.21) WILD-TYPE
  CLUS_1                            1                             10
  CLUS_2                           12                             13
  CLUS_3                           27                             47

Clustering(11) Variable = Amp Peak 11(8q24.21) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           13                             17
  CLUS_2                           15                              3
  CLUS_3                            9                             29
  CLUS_4                           13                             13
D11V2, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           12                              6
  CLUS_2                           14                             26
  CLUS_3                           16                             10
  CLUS_4                            8                             20
D11V3, multiclass
D11V4, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                            3                              9
  CLUS_2                           11                             11
  CLUS_3                           17                             17
  CLUS_4                            7                              5
D11V5, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           25                             17
  CLUS_2                            9                             18
  CLUS_3                           16                             27
D11V6, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                            8                             10
  CLUS_2                            9                             20
  CLUS_3                           20                             14
  CLUS_4                           13                             18
D11V7, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           16                             26
  CLUS_2                            9                             14
  CLUS_3                           24                             21
D11V8, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                           11                             14
  CLUS_3                           35                             39

Clustering(12) Variable = Amp Peak 12(9p24.1) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                           1                            29
  CLUS_2                           1                            17
  CLUS_3                           0                            38
  CLUS_4                           3                            23
D12V2, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                           1                            17
  CLUS_2                           2                            38
  CLUS_3                           2                            24
  CLUS_4                           0                            28
D12V3, multiclass
D12V4, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                           0                            12
  CLUS_2                           0                            22
  CLUS_3                           2                            32
  CLUS_4                           1                            11
D12V5, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                           3                            39
  CLUS_2                           0                            27
  CLUS_3                           2                            41
D12V6, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                           3                            15
  CLUS_2                           0                            29
  CLUS_3                           1                            33
  CLUS_4                           1                            30
D12V7, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                           2                            40
  CLUS_2                           1                            22
  CLUS_3                           2                            43
D12V8, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           1                            24
  CLUS_3                           3                            71

Clustering(13) Variable = Amp Peak 13(11q13.3) mutation analysis
D13V1, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                            2                             16
  CLUS_3                            3                             35
  CLUS_4                            7                             19
D13V2, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            4                             14
  CLUS_2                            7                             33
  CLUS_3                            6                             20
  CLUS_4                            2                             26
D13V3, multiclass
D13V4, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            2                             10
  CLUS_2                            4                             18
  CLUS_3                            5                             29
  CLUS_4                            2                             10
D13V5, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                            2                             25
  CLUS_3                            6                             37
D13V6, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                            3                             26
  CLUS_3                            6                             28
  CLUS_4                            3                             28
D13V7, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                            4                             19
  CLUS_3                            8                             37
D13V8, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            2                              9
  CLUS_2                            6                             19
  CLUS_3                           11                             63

Clustering(14) Variable = Amp Peak 14(12q14.1) mutation analysis
D14V1, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                            5                             13
  CLUS_3                            1                             37
  CLUS_4                            4                             22
D14V2, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                            6                             34
  CLUS_3                            6                             20
  CLUS_4                            2                             26
D14V3, multiclass
D14V4, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            3                              9
  CLUS_2                            1                             21
  CLUS_3                            6                             28
  CLUS_4                            3                              9
D14V5, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                            2                             25
  CLUS_3                           11                             32
D14V6, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                            3                             26
  CLUS_3                            5                             29
  CLUS_4                            7                             24
D14V7, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                            4                             19
  CLUS_3                            7                             38
D14V8, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            2                              9
  CLUS_2                            2                             23
  CLUS_3                           16                             58

Clustering(15) Variable = Amp Peak 15(15q26.2) mutation analysis
D15V1, multiclass
        clus
vv       AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                           11                              7
  CLUS_3                           13                             25
  CLUS_4                           10                             16
D15V2, multiclass
        clus
vv       AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE
  CLUS_1                            8                             10
  CLUS_2                           13                             27
  CLUS_3                           12                             14
  CLUS_4                           10                             18
D15V3, multiclass
D15V4, multiclass
        clus
vv       AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                            8                             14
  CLUS_3                           14                             20
  CLUS_4                            2                             10
D15V5, multiclass
        clus
vv       AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE
  CLUS_1                           17                             25
  CLUS_2                            8                             19
  CLUS_3                           18                             25
D15V6, multiclass
        clus
vv       AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE
  CLUS_1                           12                              6
  CLUS_2                            9                             20
  CLUS_3                           13                             21
  CLUS_4                            9                             22
D15V7, multiclass
        clus
vv       AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE
  CLUS_1                           15                             27
  CLUS_2                           11                             12
  CLUS_3                           16                             29
D15V8, multiclass
        clus
vv       AMP PEAK 15(15Q26.2) MUTATED AMP PEAK 15(15Q26.2) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                           11                             14
  CLUS_3                           28                             46

Clustering(16) Variable = Amp Peak 16(17q25.3) mutation analysis
D16V1, multiclass
        clus
vv       AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE
  CLUS_1                           17                             13
  CLUS_2                            5                             13
  CLUS_3                            7                             31
  CLUS_4                           15                             11
D16V2, multiclass
        clus
vv       AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE
  CLUS_1                            8                             10
  CLUS_2                            9                             31
  CLUS_3                           14                             12
  CLUS_4                           13                             15
D16V3, multiclass
D16V4, multiclass
        clus
vv       AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE
  CLUS_1                            6                              6
  CLUS_2                            8                             14
  CLUS_3                           18                             16
  CLUS_4                            4                              8
D16V5, multiclass
        clus
vv       AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE
  CLUS_1                           17                             25
  CLUS_2                            8                             19
  CLUS_3                           19                             24
D16V6, multiclass
        clus
vv       AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE
  CLUS_1                           12                              6
  CLUS_2                           11                             18
  CLUS_3                           11                             23
  CLUS_4                           10                             21
D16V7, multiclass
        clus
vv       AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE
  CLUS_1                           24                             18
  CLUS_2                           11                             12
  CLUS_3                            9                             36
D16V8, multiclass
        clus
vv       AMP PEAK 16(17Q25.3) MUTATED AMP PEAK 16(17Q25.3) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            9                             16
  CLUS_3                           31                             43

Clustering(17) Variable = Amp Peak 17(19p13.2) mutation analysis
D17V1, multiclass
        clus
vv       AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                            7                             11
  CLUS_3                            4                             34
  CLUS_4                            5                             21
D17V2, multiclass
        clus
vv       AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE
  CLUS_1                            8                             10
  CLUS_2                            3                             37
  CLUS_3                            4                             22
  CLUS_4                            4                             24
D17V3, multiclass
D17V4, multiclass
        clus
vv       AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE
  CLUS_1                            2                             10
  CLUS_2                            6                             16
  CLUS_3                            2                             32
  CLUS_4                            3                              9
D17V5, multiclass
        clus
vv       AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE
  CLUS_1                           12                             30
  CLUS_2                            2                             25
  CLUS_3                            5                             38
D17V6, multiclass
        clus
vv       AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE
  CLUS_1                            2                             16
  CLUS_2                            3                             26
  CLUS_3                            9                             25
  CLUS_4                            5                             26
D17V7, multiclass
        clus
vv       AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE
  CLUS_1                            5                             37
  CLUS_2                            5                             18
  CLUS_3                            9                             36
D17V8, multiclass
        clus
vv       AMP PEAK 17(19P13.2) MUTATED AMP PEAK 17(19P13.2) WILD-TYPE
  CLUS_1                            2                              9
  CLUS_2                            7                             18
  CLUS_3                           10                             64

Clustering(18) Variable = Amp Peak 18(22q13.2) mutation analysis
D18V1, multiclass
        clus
vv       AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE
  CLUS_1                           14                             16
  CLUS_2                           11                              7
  CLUS_3                           15                             23
  CLUS_4                            8                             18
D18V2, multiclass
        clus
vv       AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE
  CLUS_1                            9                              9
  CLUS_2                           15                             25
  CLUS_3                           12                             14
  CLUS_4                           12                             16
D18V3, multiclass
D18V4, multiclass
        clus
vv       AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                            9                             13
  CLUS_3                           15                             19
  CLUS_4                            5                              7
D18V5, multiclass
        clus
vv       AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE
  CLUS_1                           19                             23
  CLUS_2                            9                             18
  CLUS_3                           20                             23
D18V6, multiclass
        clus
vv       AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE
  CLUS_1                           11                              7
  CLUS_2                           10                             19
  CLUS_3                           16                             18
  CLUS_4                           11                             20
D18V7, multiclass
        clus
vv       AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE
  CLUS_1                           18                             24
  CLUS_2                           12                             11
  CLUS_3                           17                             28
D18V8, multiclass
        clus
vv       AMP PEAK 18(22Q13.2) MUTATED AMP PEAK 18(22Q13.2) WILD-TYPE
  CLUS_1                            5                              6
  CLUS_2                           10                             15
  CLUS_3                           32                             42

Clustering(19) Variable = Del Peak  1(1p36.31) mutation analysis
D19V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                            3                             15
  CLUS_3                            5                             33
  CLUS_4                           10                             16
D19V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                            6                             34
  CLUS_3                           10                             16
  CLUS_4                            5                             23
D19V3, multiclass
D19V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            1                             11
  CLUS_2                            3                             19
  CLUS_3                           10                             24
  CLUS_4                            3                              9
D19V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           17                             25
  CLUS_2                            2                             25
  CLUS_3                            8                             35
D19V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                            3                             26
  CLUS_3                           13                             21
  CLUS_4                            6                             25
D19V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           12                             30
  CLUS_2                            7                             16
  CLUS_3                            8                             37
D19V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            2                              9
  CLUS_2                            4                             21
  CLUS_3                           21                             53

Clustering(20) Variable = Del Peak  2(1p21.3) mutation analysis
D20V1, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           8                            22
  CLUS_2                           8                            10
  CLUS_3                           6                            32
  CLUS_4                           8                            18
D20V2, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                          10                             8
  CLUS_2                           8                            32
  CLUS_3                           8                            18
  CLUS_4                           4                            24
D20V3, multiclass
D20V4, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           1                            11
  CLUS_2                           3                            19
  CLUS_3                          12                            22
  CLUS_4                           2                            10
D20V5, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                          19                            23
  CLUS_2                           1                            26
  CLUS_3                          10                            33
D20V6, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           6                            12
  CLUS_2                           2                            27
  CLUS_3                          16                            18
  CLUS_4                           6                            25
D20V7, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                          10                            32
  CLUS_2                           8                            15
  CLUS_3                          12                            33
D20V8, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           7                            18
  CLUS_3                          21                            53

Clustering(21) Variable = Del Peak  3(2q37.3) mutation analysis
D21V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                           4                            14
  CLUS_3                           5                            33
  CLUS_4                           7                            19
D21V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           6                            12
  CLUS_2                           4                            36
  CLUS_3                           6                            20
  CLUS_4                           5                            23
D21V3, multiclass
D21V4, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           2                            10
  CLUS_2                           2                            20
  CLUS_3                           9                            25
  CLUS_4                           3                             9
D21V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                           2                            25
  CLUS_3                          12                            31
D21V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           4                            14
  CLUS_2                           5                            24
  CLUS_3                           3                            31
  CLUS_4                           9                            22
D21V7, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          10                            32
  CLUS_2                           2                            21
  CLUS_3                           8                            37
D21V8, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           1                            24
  CLUS_3                          18                            56

Clustering(22) Variable = Del Peak  4(3p24.3) mutation analysis
D22V1, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                           5                            13
  CLUS_3                           4                            34
  CLUS_4                           4                            22
D22V2, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                           3                            15
  CLUS_2                           6                            34
  CLUS_3                           6                            20
  CLUS_4                           2                            26
D22V3, multiclass
D22V4, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                           5                             7
  CLUS_2                           3                            19
  CLUS_3                           3                            31
  CLUS_4                           1                            11
D22V5, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                           4                            23
  CLUS_3                           5                            38
D22V6, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                           5                            13
  CLUS_2                           3                            26
  CLUS_3                           7                            27
  CLUS_4                           2                            29
D22V7, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                           4                            38
  CLUS_2                           5                            18
  CLUS_3                           7                            38
D22V8, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           3                            22
  CLUS_3                          11                            63

Clustering(23) Variable = Del Peak  5(4q34.3) mutation analysis
D23V1, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           2                            28
  CLUS_2                           7                            11
  CLUS_3                           8                            30
  CLUS_4                           6                            20
D23V2, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           6                            12
  CLUS_2                           7                            33
  CLUS_3                           3                            23
  CLUS_4                           7                            21
D23V3, multiclass
D23V4, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           3                             9
  CLUS_2                           4                            18
  CLUS_3                           8                            26
  CLUS_4                           4                             8
D23V5, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           9                            33
  CLUS_2                           3                            24
  CLUS_3                          11                            32
D23V6, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           3                            15
  CLUS_2                           6                            23
  CLUS_3                           8                            26
  CLUS_4                           6                            25
D23V7, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                          11                            31
  CLUS_2                           5                            18
  CLUS_3                           7                            38
D23V8, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           8                            17
  CLUS_3                          13                            61

Clustering(24) Variable = Del Peak  6(5q31.3) mutation analysis
D24V1, multiclass
        clus
vv       DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE
  CLUS_1                          12                            18
  CLUS_2                           9                             9
  CLUS_3                          19                            19
  CLUS_4                           5                            21
D24V2, multiclass
        clus
vv       DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE
  CLUS_1                           4                            14
  CLUS_2                          13                            27
  CLUS_3                          13                            13
  CLUS_4                          15                            13
D24V3, multiclass
D24V4, multiclass
        clus
vv       DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE
  CLUS_1                           2                            10
  CLUS_2                           8                            14
  CLUS_3                          14                            20
  CLUS_4                           5                             7
D24V5, multiclass
        clus
vv       DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE
  CLUS_1                          18                            24
  CLUS_2                           7                            20
  CLUS_3                          20                            23
D24V6, multiclass
        clus
vv       DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE
  CLUS_1                           9                             9
  CLUS_2                          10                            19
  CLUS_3                          13                            21
  CLUS_4                          13                            18
D24V7, multiclass
        clus
vv       DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE
  CLUS_1                          18                            24
  CLUS_2                          12                            11
  CLUS_3                          14                            31
D24V8, multiclass
        clus
vv       DEL PEAK  6(5Q31.3) MUTATED DEL PEAK  6(5Q31.3) WILD-TYPE
  CLUS_1                           7                             4
  CLUS_2                           9                            16
  CLUS_3                          28                            46

Clustering(25) Variable = Del Peak  7(6q25.3) mutation analysis
D25V1, multiclass
        clus
vv       DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE
  CLUS_1                          23                             7
  CLUS_2                          10                             8
  CLUS_3                           9                            29
  CLUS_4                          25                             1
D25V2, multiclass
        clus
vv       DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE
  CLUS_1                          13                             5
  CLUS_2                          15                            25
  CLUS_3                          19                             7
  CLUS_4                          20                             8
D25V3, multiclass
D25V4, multiclass
        clus
vv       DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE
  CLUS_1                           5                             7
  CLUS_2                          13                             9
  CLUS_3                          24                            10
  CLUS_4                           8                             4
D25V5, multiclass
        clus
vv       DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE
  CLUS_1                          28                            14
  CLUS_2                          10                            17
  CLUS_3                          29                            14
D25V6, multiclass
        clus
vv       DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE
  CLUS_1                           9                             9
  CLUS_2                          15                            14
  CLUS_3                          22                            12
  CLUS_4                          21                            10
D25V7, multiclass
        clus
vv       DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE
  CLUS_1                          27                            15
  CLUS_2                          17                             6
  CLUS_3                          22                            23
D25V8, multiclass
        clus
vv       DEL PEAK  7(6Q25.3) MUTATED DEL PEAK  7(6Q25.3) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                          14                            11
  CLUS_3                          44                            30

Clustering(26) Variable = Del Peak  8(6q26) mutation analysis
D26V1, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                        21                           9
  CLUS_2                        10                           8
  CLUS_3                         8                          30
  CLUS_4                        24                           2
D26V2, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                        13                           5
  CLUS_2                        15                          25
  CLUS_3                        18                           8
  CLUS_4                        17                          11
D26V3, multiclass
D26V4, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                         4                           8
  CLUS_2                        13                           9
  CLUS_3                        22                          12
  CLUS_4                         8                           4
D26V5, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                        27                          15
  CLUS_2                        10                          17
  CLUS_3                        26                          17
D26V6, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                         7                          11
  CLUS_2                        14                          15
  CLUS_3                        22                          12
  CLUS_4                        20                          11
D26V7, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                        26                          16
  CLUS_2                        15                           8
  CLUS_3                        22                          23
D26V8, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                         7                           4
  CLUS_2                        14                          11
  CLUS_3                        42                          32

Clustering(27) Variable = Del Peak  9(8p23.3) mutation analysis
D27V1, multiclass
        clus
vv       DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE
  CLUS_1                          10                            20
  CLUS_2                           2                            16
  CLUS_3                           7                            31
  CLUS_4                          10                            16
D27V2, multiclass
        clus
vv       DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE
  CLUS_1                           7                            11
  CLUS_2                           5                            35
  CLUS_3                           8                            18
  CLUS_4                           9                            19
D27V3, multiclass
D27V4, multiclass
        clus
vv       DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE
  CLUS_1                           0                            12
  CLUS_2                           7                            15
  CLUS_3                          13                            21
  CLUS_4                           3                             9
D27V5, multiclass
        clus
vv       DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE
  CLUS_1                          11                            31
  CLUS_2                           5                            22
  CLUS_3                          13                            30
D27V6, multiclass
        clus
vv       DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE
  CLUS_1                           4                            14
  CLUS_2                           5                            24
  CLUS_3                           9                            25
  CLUS_4                          11                            20
D27V7, multiclass
        clus
vv       DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE
  CLUS_1                          14                            28
  CLUS_2                           5                            18
  CLUS_3                          10                            35
D27V8, multiclass
        clus
vv       DEL PEAK  9(8P23.3) MUTATED DEL PEAK  9(8P23.3) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           5                            20
  CLUS_3                          22                            52

Clustering(28) Variable = Del Peak 10(9p23) mutation analysis
D28V1, multiclass
        clus
vv       DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE
  CLUS_1                        28                           2
  CLUS_2                        16                           2
  CLUS_3                        18                          20
  CLUS_4                        13                          13
D28V2, multiclass
        clus
vv       DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE
  CLUS_1                        13                           5
  CLUS_2                        22                          18
  CLUS_3                        19                           7
  CLUS_4                        21                           7
D28V3, multiclass
D28V4, multiclass
        clus
vv       DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE
  CLUS_1                         8                           4
  CLUS_2                        17                           5
  CLUS_3                        22                          12
  CLUS_4                         7                           5
D28V5, multiclass
        clus
vv       DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE
  CLUS_1                        34                           8
  CLUS_2                        11                          16
  CLUS_3                        30                          13
D28V6, multiclass
        clus
vv       DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE
  CLUS_1                        15                           3
  CLUS_2                        15                          14
  CLUS_3                        26                           8
  CLUS_4                        19                          12
D28V7, multiclass
        clus
vv       DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE
  CLUS_1                        29                          13
  CLUS_2                        16                           7
  CLUS_3                        28                          17
D28V8, multiclass
        clus
vv       DEL PEAK 10(9P23) MUTATED DEL PEAK 10(9P23) WILD-TYPE
  CLUS_1                         7                           4
  CLUS_2                        14                          11
  CLUS_3                        52                          22

Clustering(29) Variable = Del Peak 11(9p21.3) mutation analysis
D29V1, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          28                             2
  CLUS_2                          17                             1
  CLUS_3                          20                            18
  CLUS_4                          21                             5
D29V2, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          16                             2
  CLUS_2                          24                            16
  CLUS_3                          22                             4
  CLUS_4                          24                             4
D29V3, multiclass
D29V4, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           9                             3
  CLUS_2                          19                             3
  CLUS_3                          27                             7
  CLUS_4                           9                             3
D29V5, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          39                             3
  CLUS_2                          12                            15
  CLUS_3                          35                             8
D29V6, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          17                             1
  CLUS_2                          15                            14
  CLUS_3                          30                             4
  CLUS_4                          24                             7
D29V7, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          34                             8
  CLUS_2                          19                             4
  CLUS_3                          31                            14
D29V8, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           7                             4
  CLUS_2                          17                             8
  CLUS_3                          60                            14

Clustering(30) Variable = Del Peak 12(10p15.3) mutation analysis
D30V1, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                           18                             12
  CLUS_2                           15                              3
  CLUS_3                           14                             24
  CLUS_4                            8                             18
D30V2, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                           12                              6
  CLUS_2                           14                             26
  CLUS_3                           14                             12
  CLUS_4                           15                             13
D30V3, multiclass
D30V4, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                           11                             11
  CLUS_3                           20                             14
  CLUS_4                            3                              9
D30V5, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                           26                             16
  CLUS_2                            9                             18
  CLUS_3                           20                             23
D30V6, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                           10                             19
  CLUS_3                           23                             11
  CLUS_4                           15                             16
D30V7, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                           25                             17
  CLUS_2                           11                             12
  CLUS_3                           19                             26
D30V8, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                           13                             12
  CLUS_3                           38                             36

Clustering(31) Variable = Del Peak 13(10q23.31) mutation analysis
D31V1, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                            19                              11
  CLUS_2                            14                               4
  CLUS_3                            17                              21
  CLUS_4                            14                              12
D31V2, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                            10                               8
  CLUS_2                            18                              22
  CLUS_3                            19                               7
  CLUS_4                            17                              11
D31V3, multiclass
D31V4, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                             7                               5
  CLUS_2                            11                              11
  CLUS_3                            22                              12
  CLUS_4                             3                               9
D31V5, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                            29                              13
  CLUS_2                             9                              18
  CLUS_3                            26                              17
D31V6, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                            14                               4
  CLUS_2                            11                              18
  CLUS_3                            25                               9
  CLUS_4                            14                              17
D31V7, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                            27                              15
  CLUS_2                            18                               5
  CLUS_3                            18                              27
D31V8, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                             9                               2
  CLUS_2                            12                              13
  CLUS_3                            42                              32

Clustering(32) Variable = Del Peak 14(11q23.1) mutation analysis
D32V1, multiclass
        clus
vv       DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE
  CLUS_1                           25                              5
  CLUS_2                           12                              6
  CLUS_3                           14                             24
  CLUS_4                           10                             16
D32V2, multiclass
        clus
vv       DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE
  CLUS_1                           13                              5
  CLUS_2                           17                             23
  CLUS_3                           14                             12
  CLUS_4                           17                             11
D32V3, multiclass
D32V4, multiclass
        clus
vv       DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE
  CLUS_1                            6                              6
  CLUS_2                           12                             10
  CLUS_3                           22                             12
  CLUS_4                            7                              5
D32V5, multiclass
        clus
vv       DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE
  CLUS_1                           25                             17
  CLUS_2                            9                             18
  CLUS_3                           27                             16
D32V6, multiclass
        clus
vv       DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE
  CLUS_1                           16                              2
  CLUS_2                            9                             20
  CLUS_3                           19                             15
  CLUS_4                           17                             14
D32V7, multiclass
        clus
vv       DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE
  CLUS_1                           24                             18
  CLUS_2                           18                              5
  CLUS_3                           18                             27
D32V8, multiclass
        clus
vv       DEL PEAK 14(11Q23.1) MUTATED DEL PEAK 14(11Q23.1) WILD-TYPE
  CLUS_1                            7                              4
  CLUS_2                           11                             14
  CLUS_3                           42                             32

Clustering(33) Variable = Del Peak 15(12q24.33) mutation analysis
D33V1, multiclass
        clus
vv       DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE
  CLUS_1                             8                              22
  CLUS_2                             2                              16
  CLUS_3                             7                              31
  CLUS_4                             4                              22
D33V2, multiclass
        clus
vv       DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE
  CLUS_1                             5                              13
  CLUS_2                             5                              35
  CLUS_3                             3                              23
  CLUS_4                             8                              20
D33V3, multiclass
D33V4, multiclass
        clus
vv       DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE
  CLUS_1                             1                              11
  CLUS_2                             5                              17
  CLUS_3                             8                              26
  CLUS_4                             3                               9
D33V5, multiclass
        clus
vv       DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE
  CLUS_1                             6                              36
  CLUS_2                             5                              22
  CLUS_3                            10                              33
D33V6, multiclass
        clus
vv       DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE
  CLUS_1                             1                              17
  CLUS_2                             5                              24
  CLUS_3                             6                              28
  CLUS_4                             9                              22
D33V7, multiclass
        clus
vv       DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE
  CLUS_1                             8                              34
  CLUS_2                             5                              18
  CLUS_3                             7                              38
D33V8, multiclass
        clus
vv       DEL PEAK 15(12Q24.33) MUTATED DEL PEAK 15(12Q24.33) WILD-TYPE
  CLUS_1                             2                               9
  CLUS_2                             4                              21
  CLUS_3                            14                              60

Clustering(34) Variable = Del Peak 16(13q34) mutation analysis
D34V1, multiclass
        clus
vv       DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE
  CLUS_1                          9                           21
  CLUS_2                          8                           10
  CLUS_3                          8                           30
  CLUS_4                          6                           20
D34V2, multiclass
        clus
vv       DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE
  CLUS_1                          6                           12
  CLUS_2                         12                           28
  CLUS_3                          7                           19
  CLUS_4                          6                           22
D34V3, multiclass
D34V4, multiclass
        clus
vv       DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE
  CLUS_1                          4                            8
  CLUS_2                          5                           17
  CLUS_3                          9                           25
  CLUS_4                          3                            9
D34V5, multiclass
        clus
vv       DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE
  CLUS_1                         11                           31
  CLUS_2                          7                           20
  CLUS_3                         13                           30
D34V6, multiclass
        clus
vv       DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE
  CLUS_1                          7                           11
  CLUS_2                          7                           22
  CLUS_3                         11                           23
  CLUS_4                          6                           25
D34V7, multiclass
        clus
vv       DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE
  CLUS_1                         17                           25
  CLUS_2                          6                           17
  CLUS_3                          7                           38
D34V8, multiclass
        clus
vv       DEL PEAK 16(13Q34) MUTATED DEL PEAK 16(13Q34) WILD-TYPE
  CLUS_1                          1                           10
  CLUS_2                          9                           16
  CLUS_3                         20                           54

Clustering(35) Variable = Del Peak 17(15q13.3) mutation analysis
D35V1, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                           11                             19
  CLUS_2                            4                             14
  CLUS_3                            3                             35
  CLUS_4                            7                             19
D35V2, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                            6                             34
  CLUS_3                            6                             20
  CLUS_4                            8                             20
D35V3, multiclass
D35V4, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                            2                             10
  CLUS_2                            5                             17
  CLUS_3                            9                             25
  CLUS_4                            5                              7
D35V5, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                            3                             24
  CLUS_3                           11                             32
D35V6, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                            4                             14
  CLUS_2                            4                             25
  CLUS_3                           10                             24
  CLUS_4                            7                             24
D35V7, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                            5                             18
  CLUS_3                            9                             36
D35V8, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                            2                              9
  CLUS_2                            6                             19
  CLUS_3                           17                             57

Clustering(36) Variable = Del Peak 18(15q15.3) mutation analysis
D36V1, multiclass
        clus
vv       DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                            4                             14
  CLUS_3                            4                             34
  CLUS_4                            8                             18
D36V2, multiclass
        clus
vv       DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                            7                             33
  CLUS_3                            7                             19
  CLUS_4                            7                             21
D36V3, multiclass
D36V4, multiclass
        clus
vv       DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE
  CLUS_1                            2                             10
  CLUS_2                            6                             16
  CLUS_3                            9                             25
  CLUS_4                            4                              8
D36V5, multiclass
        clus
vv       DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                            5                             22
  CLUS_3                           11                             32
D36V6, multiclass
        clus
vv       DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE
  CLUS_1                            4                             14
  CLUS_2                            6                             23
  CLUS_3                            8                             26
  CLUS_4                            8                             23
D36V7, multiclass
        clus
vv       DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                            4                             19
  CLUS_3                            9                             36
D36V8, multiclass
        clus
vv       DEL PEAK 18(15Q15.3) MUTATED DEL PEAK 18(15Q15.3) WILD-TYPE
  CLUS_1                            1                             10
  CLUS_2                            5                             20
  CLUS_3                           20                             54

Clustering(37) Variable = Del Peak 19(16p13.3) mutation analysis
D37V1, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                            7                             11
  CLUS_3                            6                             32
  CLUS_4                            4                             22
D37V2, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            4                             14
  CLUS_2                            4                             36
  CLUS_3                            5                             21
  CLUS_4                            9                             19
D37V3, multiclass
D37V4, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            1                             11
  CLUS_2                            6                             16
  CLUS_3                            7                             27
  CLUS_4                            3                              9
D37V5, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                            1                             26
  CLUS_3                           10                             33
D37V6, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            4                             14
  CLUS_2                            2                             27
  CLUS_3                            9                             25
  CLUS_4                            7                             24
D37V7, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                            7                             16
  CLUS_3                            5                             40
D37V8, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            5                             20
  CLUS_3                           14                             60

Clustering(38) Variable = Del Peak 20(16q12.1) mutation analysis
D38V1, multiclass
        clus
vv       DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE
  CLUS_1                           13                             17
  CLUS_2                            9                              9
  CLUS_3                           11                             27
  CLUS_4                            5                             21
D38V2, multiclass
        clus
vv       DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                           10                             30
  CLUS_3                            7                             19
  CLUS_4                           14                             14
D38V3, multiclass
D38V4, multiclass
        clus
vv       DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE
  CLUS_1                            3                              9
  CLUS_2                            7                             15
  CLUS_3                           15                             19
  CLUS_4                            4                              8
D38V5, multiclass
        clus
vv       DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                            6                             21
  CLUS_3                           19                             24
D38V6, multiclass
        clus
vv       DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                            7                             22
  CLUS_3                           10                             24
  CLUS_4                           14                             17
D38V7, multiclass
        clus
vv       DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE
  CLUS_1                           18                             24
  CLUS_2                            8                             15
  CLUS_3                           12                             33
D38V8, multiclass
        clus
vv       DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            5                             20
  CLUS_3                           30                             44

Clustering(39) Variable = Del Peak 21(16q24.2) mutation analysis
D39V1, multiclass
        clus
vv       DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE
  CLUS_1                           13                             17
  CLUS_2                            7                             11
  CLUS_3                           12                             26
  CLUS_4                           11                             15
D39V2, multiclass
        clus
vv       DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                           12                             28
  CLUS_3                           10                             16
  CLUS_4                           15                             13
D39V3, multiclass
D39V4, multiclass
        clus
vv       DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE
  CLUS_1                            2                             10
  CLUS_2                            8                             14
  CLUS_3                           19                             15
  CLUS_4                            4                              8
D39V5, multiclass
        clus
vv       DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                            8                             19
  CLUS_3                           22                             21
D39V6, multiclass
        clus
vv       DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE
  CLUS_1                            9                              9
  CLUS_2                            9                             20
  CLUS_3                           10                             24
  CLUS_4                           15                             16
D39V7, multiclass
        clus
vv       DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE
  CLUS_1                           20                             22
  CLUS_2                           11                             12
  CLUS_3                           12                             33
D39V8, multiclass
        clus
vv       DEL PEAK 21(16Q24.2) MUTATED DEL PEAK 21(16Q24.2) WILD-TYPE
  CLUS_1                            5                              6
  CLUS_2                            7                             18
  CLUS_3                           31                             43
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"             "RPPA_CNMF" 
                     V4                      V5                      V6 
   "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL" 
                     V7                      V8 
          "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
