
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/404143/SKCM-Regional_Metastatic.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/SKCM-Regional_Metastatic/3215668/SKCM-Regional_Metastatic.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=152, in cluster file=137, common to both=137
[1]  72 137
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              23              114 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              23              114 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            23            114 
  TP53 MUTATED TP53 WILD-TYPE 
            23            114 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            73             64 
  BRAF MUTATED BRAF WILD-TYPE 
            73             64 
[1] "C15ORF23 MUTATION ANALYSIS"
[1] 3
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                10                127 
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                10                127 
[1] "ERVFRDE1 MUTATION ANALYSIS"
[1] 3
  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
                 3                134 
  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
                 3                134 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
            39             98 
  NRAS MUTATED NRAS WILD-TYPE 
            39             98 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            12            125 
  PTEN MUTATED PTEN WILD-TYPE 
            12            125 
[1] "PPP6C MUTATION ANALYSIS"
[1] 3
  PPP6C MUTATED PPP6C WILD-TYPE 
             14             123 
  PPP6C MUTATED PPP6C WILD-TYPE 
             14             123 
[1] "PRB4 MUTATION ANALYSIS"
[1] 3
  PRB4 MUTATED PRB4 WILD-TYPE 
            16            121 
  PRB4 MUTATED PRB4 WILD-TYPE 
            16            121 
[1] "RAC1 MUTATION ANALYSIS"
[1] 3
  RAC1 MUTATED RAC1 WILD-TYPE 
             9            128 
  RAC1 MUTATED RAC1 WILD-TYPE 
             9            128 
[1] "CDH9 MUTATION ANALYSIS"
[1] 3
  CDH9 MUTATED CDH9 WILD-TYPE 
            23            114 
  CDH9 MUTATED CDH9 WILD-TYPE 
            23            114 
[1] "STK19 MUTATION ANALYSIS"
[1] 3
  STK19 MUTATED STK19 WILD-TYPE 
              9             128 
  STK19 MUTATED STK19 WILD-TYPE 
              9             128 
[1] "ADH1C MUTATION ANALYSIS"
[1] 3
  ADH1C MUTATED ADH1C WILD-TYPE 
             20             117 
  ADH1C MUTATED ADH1C WILD-TYPE 
             20             117 
[1] "TCEB3C MUTATION ANALYSIS"
[1] 3
  TCEB3C MUTATED TCEB3C WILD-TYPE 
              19              118 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
              19              118 
[1] "DDX3X MUTATION ANALYSIS"
[1] 3
  DDX3X MUTATED DDX3X WILD-TYPE 
             14             123 
  DDX3X MUTATED DDX3X WILD-TYPE 
             14             123 
[1] "TRAT1 MUTATION ANALYSIS"
[1] 3
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              9             128 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              9             128 
[1] "TTN MUTATION ANALYSIS"
[1] 3
  TTN MUTATED TTN WILD-TYPE 
          108            29 
  TTN MUTATED TTN WILD-TYPE 
          108            29 
[1] "GH2 MUTATION ANALYSIS"
[1] 3
  GH2 MUTATED GH2 WILD-TYPE 
           10           127 
  GH2 MUTATED GH2 WILD-TYPE 
           10           127 
[1] "TFEC MUTATION ANALYSIS"
[1] 3
  TFEC MUTATED TFEC WILD-TYPE 
            13            124 
  TFEC MUTATED TFEC WILD-TYPE 
            13            124 
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
             7            130 
  IDH1 MUTATED IDH1 WILD-TYPE 
             7            130 
[1] "WDR12 MUTATION ANALYSIS"
[1] 3
  WDR12 MUTATED WDR12 WILD-TYPE 
              9             128 
  WDR12 MUTATED WDR12 WILD-TYPE 
              9             128 
[1] "RGS18 MUTATION ANALYSIS"
[1] 3
  RGS18 MUTATED RGS18 WILD-TYPE 
              7             130 
  RGS18 MUTATED RGS18 WILD-TYPE 
              7             130 
[1] "POF1B MUTATION ANALYSIS"
[1] 3
  POF1B MUTATED POF1B WILD-TYPE 
             17             120 
  POF1B MUTATED POF1B WILD-TYPE 
             17             120 
[1] "OR5AC2 MUTATION ANALYSIS"
[1] 3
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
              16              121 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
              16              121 
[1] "VEGFC MUTATION ANALYSIS"
[1] 3
  VEGFC MUTATED VEGFC WILD-TYPE 
             13             124 
  VEGFC MUTATED VEGFC WILD-TYPE 
             13             124 
[1] "RERG MUTATION ANALYSIS"
[1] 3
  RERG MUTATED RERG WILD-TYPE 
             9            128 
  RERG MUTATED RERG WILD-TYPE 
             9            128 
[1] "CCNE2 MUTATION ANALYSIS"
[1] 3
  CCNE2 MUTATED CCNE2 WILD-TYPE 
             10             127 
  CCNE2 MUTATED CCNE2 WILD-TYPE 
             10             127 
[1] "GPR141 MUTATION ANALYSIS"
[1] 3
  GPR141 MUTATED GPR141 WILD-TYPE 
              12              125 
  GPR141 MUTATED GPR141 WILD-TYPE 
              12              125 
[1] "GK2 MUTATION ANALYSIS"
[1] 3
  GK2 MUTATED GK2 WILD-TYPE 
           17           120 
  GK2 MUTATED GK2 WILD-TYPE 
           17           120 
[1] "NAP1L2 MUTATION ANALYSIS"
[1] 3
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
              12              125 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
              12              125 
[1] "SNAP91 MUTATION ANALYSIS"
[1] 3
  SNAP91 MUTATED SNAP91 WILD-TYPE 
              18              119 
  SNAP91 MUTATED SNAP91 WILD-TYPE 
              18              119 
[1] "PRB2 MUTATION ANALYSIS"
[1] 3
  PRB2 MUTATED PRB2 WILD-TYPE 
            20            117 
  PRB2 MUTATED PRB2 WILD-TYPE 
            20            117 
[1] "TLL1 MUTATION ANALYSIS"
[1] 3
  TLL1 MUTATED TLL1 WILD-TYPE 
            27            110 
  TLL1 MUTATED TLL1 WILD-TYPE 
            27            110 
[1] "HBD MUTATION ANALYSIS"
[1] 3
  HBD MUTATED HBD WILD-TYPE 
            8           129 
  HBD MUTATED HBD WILD-TYPE 
            8           129 
[1] "GRXCR2 MUTATION ANALYSIS"
[1] 3
  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
              11              126 
  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
              11              126 
[1] "NOTCH2NL MUTATION ANALYSIS"
[1] 3
  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
                 9                128 
  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
                 9                128 
[1] "OXA1L MUTATION ANALYSIS"
[1] 3
  OXA1L MUTATED OXA1L WILD-TYPE 
              4             133 
  OXA1L MUTATED OXA1L WILD-TYPE 
              4             133 
[1] "AREG MUTATION ANALYSIS"
[1] 3
  AREG MUTATED AREG WILD-TYPE 
             6            131 
  AREG MUTATED AREG WILD-TYPE 
             6            131 
[1] "HBG2 MUTATION ANALYSIS"
[1] 3
  HBG2 MUTATED HBG2 WILD-TYPE 
             6            131 
  HBG2 MUTATED HBG2 WILD-TYPE 
             6            131 
[1] "SERPINB4 MUTATION ANALYSIS"
[1] 3
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                20                117 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                20                117 
[1] "SPTLC3 MUTATION ANALYSIS"
[1] 3
  SPTLC3 MUTATED SPTLC3 WILD-TYPE 
              14              123 
  SPTLC3 MUTATED SPTLC3 WILD-TYPE 
              14              123 
[1] "TAF1A MUTATION ANALYSIS"
[1] 3
  TAF1A MUTATED TAF1A WILD-TYPE 
              9             128 
  TAF1A MUTATED TAF1A WILD-TYPE 
              9             128 
[1] "CLVS2 MUTATION ANALYSIS"
[1] 3
  CLVS2 MUTATED CLVS2 WILD-TYPE 
             13             124 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
             13             124 
[1] "CCDC102B MUTATION ANALYSIS"
[1] 3
  CCDC102B MUTATED CCDC102B WILD-TYPE 
                15                122 
  CCDC102B MUTATED CCDC102B WILD-TYPE 
                15                122 
[1] "OR4N2 MUTATION ANALYSIS"
[1] 3
  OR4N2 MUTATED OR4N2 WILD-TYPE 
             15             122 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
             15             122 
[1] "OR8D4 MUTATION ANALYSIS"
[1] 3
  OR8D4 MUTATED OR8D4 WILD-TYPE 
              9             128 
  OR8D4 MUTATED OR8D4 WILD-TYPE 
              9             128 
[1] "RBM11 MUTATION ANALYSIS"
[1] 3
  RBM11 MUTATED RBM11 WILD-TYPE 
             10             127 
  RBM11 MUTATED RBM11 WILD-TYPE 
             10             127 
[1] "DEFB118 MUTATION ANALYSIS"
[1] 3
  DEFB118 MUTATED DEFB118 WILD-TYPE 
                7               130 
  DEFB118 MUTATED DEFB118 WILD-TYPE 
                7               130 
[1] "GRXCR1 MUTATION ANALYSIS"
[1] 3
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
              13              124 
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
              13              124 
[1] "RGPD3 MUTATION ANALYSIS"
[1] 3
  RGPD3 MUTATED RGPD3 WILD-TYPE 
             22             115 
  RGPD3 MUTATED RGPD3 WILD-TYPE 
             22             115 
[1] "CA1 MUTATION ANALYSIS"
[1] 3
  CA1 MUTATED CA1 WILD-TYPE 
            8           129 
  CA1 MUTATED CA1 WILD-TYPE 
            8           129 
[1] "HNF4G MUTATION ANALYSIS"
[1] 3
  HNF4G MUTATED HNF4G WILD-TYPE 
             15             122 
  HNF4G MUTATED HNF4G WILD-TYPE 
             15             122 
[1] "ACTL7B MUTATION ANALYSIS"
[1] 3
  ACTL7B MUTATED ACTL7B WILD-TYPE 
               8              129 
  ACTL7B MUTATED ACTL7B WILD-TYPE 
               8              129 
[1] "SPAG16 MUTATION ANALYSIS"
[1] 3
  SPAG16 MUTATED SPAG16 WILD-TYPE 
              12              125 
  SPAG16 MUTATED SPAG16 WILD-TYPE 
              12              125 
[1] "PCDHB8 MUTATION ANALYSIS"
[1] 3
  PCDHB8 MUTATED PCDHB8 WILD-TYPE 
              23              114 
  PCDHB8 MUTATED PCDHB8 WILD-TYPE 
              23              114 
[1] "HIST1H2AA MUTATION ANALYSIS"
[1] 3
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  5                 132 
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  5                 132 
[1] "OR10K2 MUTATION ANALYSIS"
[1] 3
  OR10K2 MUTATED OR10K2 WILD-TYPE 
              14              123 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
              14              123 
[1] "PHGDH MUTATION ANALYSIS"
[1] 3
  PHGDH MUTATED PHGDH WILD-TYPE 
              8             129 
  PHGDH MUTATED PHGDH WILD-TYPE 
              8             129 
[1] "OR9K2 MUTATION ANALYSIS"
[1] 3
  OR9K2 MUTATED OR9K2 WILD-TYPE 
             11             126 
  OR9K2 MUTATED OR9K2 WILD-TYPE 
             11             126 
[1] "LIN7A MUTATION ANALYSIS"
[1] 3
  LIN7A MUTATED LIN7A WILD-TYPE 
              8             129 
  LIN7A MUTATED LIN7A WILD-TYPE 
              8             129 
[1] "USP17L2 MUTATION ANALYSIS"
[1] 3
  USP17L2 MUTATED USP17L2 WILD-TYPE 
               13               124 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
               13               124 
[1] "ANKRD20A4 MUTATION ANALYSIS"
[1] 3
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  4                 133 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  4                 133 
[1] "CYLC2 MUTATION ANALYSIS"
[1] 3
  CYLC2 MUTATED CYLC2 WILD-TYPE 
             14             123 
  CYLC2 MUTATED CYLC2 WILD-TYPE 
             14             123 
[1] "VGLL1 MUTATION ANALYSIS"
[1] 3
  VGLL1 MUTATED VGLL1 WILD-TYPE 
              5             132 
  VGLL1 MUTATED VGLL1 WILD-TYPE 
              5             132 
[1] "DEFB110 MUTATION ANALYSIS"
[1] 3
  DEFB110 MUTATED DEFB110 WILD-TYPE 
                5               132 
  DEFB110 MUTATED DEFB110 WILD-TYPE 
                5               132 
[1] "LCE1B MUTATION ANALYSIS"
[1] 3
  LCE1B MUTATED LCE1B WILD-TYPE 
              7             130 
  LCE1B MUTATED LCE1B WILD-TYPE 
              7             130 
[1] "PARM1 MUTATION ANALYSIS"
[1] 3
  PARM1 MUTATED PARM1 WILD-TYPE 
             10             127 
  PARM1 MUTATED PARM1 WILD-TYPE 
             10             127 
[1] "ACSM2B MUTATION ANALYSIS"
[1] 3
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              24              113 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              24              113 
[1] "BAGE2 MUTATION ANALYSIS"
[1] 3
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              7             130 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              7             130 
[1] "CECR6 MUTATION ANALYSIS"
[1] 3
  CECR6 MUTATED CECR6 WILD-TYPE 
              6             131 
  CECR6 MUTATED CECR6 WILD-TYPE 
              6             131 
[1] "OR4M2 MUTATION ANALYSIS"
[1] 3
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             15             122 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             15             122 
[1] "CERKL MUTATION ANALYSIS"
[1] 3
  CERKL MUTATED CERKL WILD-TYPE 
             10             127 
  CERKL MUTATED CERKL WILD-TYPE 
             10             127 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "DAYSTOSUBMITTEDSPECIMENDX"             
 [5] "VITALSTATUS"                           
 [6] "DCCUPLOADDATE"                         
 [7] "PRIMARYSITEOFDESEASE"                  
 [8] "GENDER"                                
 [9] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[10] "RADIATIONTHERAPY"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "DISTANT.METASTASIS"                    
[13] "LYMPH.NODE.METASTASIS"                 
[14] "TUMOR.STAGECODE"                       
[15] "NEOPLASM.DISEASESTAGE"                 
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 137 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
          NA           NA           NA         3004           NA           NA 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
          NA           NA           NA           NA           NA           NA 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
        1390           NA           NA           NA          164           NA 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
          NA           NA           NA          122           87         1484 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
          NA         1555           NA         1192           NA           NA 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
        1116           NA          680           NA          589           NA 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
         534          451           NA           NA           NA           NA 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
          NA         1097          156         1155           NA         1175 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
         134           NA           NA          366          247          269 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
         304           NA           NA          769          727           NA 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
         272           NA           NA           NA           NA           NA 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
          NA           NA           NA           NA           NA           NA 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A19O 
          NA           NA           NA           NA         1303           NA 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1Z4 TCGA-FS-A1ZD 
        2386          200           NA           NA           NA           NA 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1ZW TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
          NA           31           NA          756           NA         2577 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
          NA           NA           NA           NA          447 
Variable 1:'AGE':	nDistinctValues=57,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=32,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOSUBMITTEDSPECIMENDX':	nDistinctValues=71,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 6:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=24,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DISTANT.METASTASIS':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'LYMPH.NODE.METASTASIS':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGECODE':	nDistinctValues=15,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NEOPLASM.DISEASESTAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                     "PRIMARY.SITE.OF.DISEASE"
[3] "GENDER"                  "DISTANT.METASTASIS"     
[5] "LYMPH.NODE.METASTASIS"   "TUMOR.STAGECODE"        
[7] "NEOPLASM.DISEASESTAGE"  
[1] "TUMOR.?STAGE" "6"           
[1] "stage2"
vv
 T0  T1 T1A T1B  T2 T2A T2B  T3 T3A T3B  T4 T4A T4B TIS  TX 
  6   3  11   3  14  13   6   4  17   9   4   6  18   1   9 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 137 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=57, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
DISTANT.METASTASIS, nv=5, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=10, binary=FALSE, numeric=FALSE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=13, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CDKN2A MUTATION ANALYSIS
D1V1, survival
                  sevent
clus2               0  1
  CDKN2A MUTATED    7  7
  CDKN2A WILD-TYPE 25 37
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              14               62 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               7               37 
$`CDKN2A MUTATED`
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1HY 
       11.41         6.35         5.39         4.01        48.79        51.12 
TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A29E TCGA-EE-A2A6 TCGA-ER-A19D 
        1.12         4.27        36.07        38.63         8.94         3.52 
TCGA-ER-A19L TCGA-GN-A26A 
       12.99        12.16 

$`CDKN2A WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
       10.26         8.38        21.14        15.25        45.70        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 
       24.00         9.30         2.86        35.80        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L 
       12.20         5.13        37.97        11.15         4.41         1.08 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X 
        9.47        12.03         8.12         8.84         9.99         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-ER-A19F TCGA-ER-A19J 
       11.31        25.28        23.90         9.67        11.11         4.18 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 
       28.64        42.84        78.44         6.58         8.81         1.02 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       15.35        24.85        31.33        84.72        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A26D 
       15.39        14.70 

  CDKN2A MUTATED CDKN2A WILD-TYPE 
            1.12             1.02 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           51.12            98.76 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
          10.175           14.190 
[1] "1.1 - 51.1 (10.2)" "1.0 - 98.8 (14.2)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
[1] "hr=" "1"  
D1V2, continuous
D1V3, binary
                  cls
clus                0  1
  CDKN2A MUTATED    7 16
  CDKN2A WILD-TYPE 25 89
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      7   16
  CDKN2A WILD-TYPE   25   89
                                                                                          clus
vv                                                                                         CDKN2A MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              7
  REGIONAL LYMPH NODE                                                                                  16
                                                                                          clus
vv                                                                                         CDKN2A WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               25
  REGIONAL LYMPH NODE                                                                                    89
D1V4, binary
                  cls
clus                0  1
  CDKN2A MUTATED    9 14
  CDKN2A WILD-TYPE 37 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      9   14
  CDKN2A WILD-TYPE   37   77
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  FEMALE              9               37
  MALE               14               77
                  vv
clus               M0 M1 M1A M1B M1C
  CDKN2A MUTATED   21  0   0   0   0
  CDKN2A WILD-TYPE 98  1   1   2   1
D1V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CDKN2A MUTATED   10  0   3   2  0   1   2   0  3  0
  CDKN2A WILD-TYPE 61  2   3   9  1   3   8   4 12  1
D1V6, multiclass
D1V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CDKN2A MUTATED             0       1        2        2        3         0
  CDKN2A WILD-TYPE           1      14        6       10       13         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CDKN2A MUTATED           1         1         0          1          5
  CDKN2A WILD-TYPE         6         3         7          4         11
                  vv
clus               STAGE IIIC STAGE IV
  CDKN2A MUTATED            5        0
  CDKN2A WILD-TYPE         14        3
D1V8, multiclass

Clustering(2) Variable = TP53 MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  TP53 MUTATED    5  5
  TP53 WILD-TYPE 27 39
  TP53 MUTATED TP53 WILD-TYPE 
            10             66 
  TP53 MUTATED TP53 WILD-TYPE 
             5             39 
$`TP53 MUTATED`
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-EE-A181 TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29X 
       48.79        35.80         1.12        38.63         1.08         8.09 
TCGA-EE-A2A2 TCGA-ER-A3ET TCGA-FW-A3R5 TCGA-GN-A266 
       23.90         6.58         1.02        10.09 

$`TP53 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
        2.86        51.12        10.03        39.19        13.68         9.99 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 
       17.56        14.83        11.57         6.31        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29N 
       36.07         5.13        37.97        11.15         4.41         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2A1 
       12.03         8.12         8.84         9.99        11.31        25.28 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 
       28.64        42.84        78.44         8.81        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        16.21        15.39        12.16        14.70 

  TP53 MUTATED TP53 WILD-TYPE 
          1.02           2.86 
  TP53 MUTATED TP53 WILD-TYPE 
         48.79          98.76 
  TP53 MUTATED TP53 WILD-TYPE 
         9.090         13.155 
[1] "1.0 - 48.8 (9.1)"  "2.9 - 98.8 (13.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
[1] "hr=" "1"  
D2V2, continuous
D2V3, binary
                cls
clus              0  1
  TP53 MUTATED    5 18
  TP53 WILD-TYPE 27 87
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      5   18
  TP53 WILD-TYPE   27   87
                                                                                          clus
vv                                                                                         TP53 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            5
  REGIONAL LYMPH NODE                                                                                18
                                                                                          clus
vv                                                                                         TP53 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             27
  REGIONAL LYMPH NODE                                                                                  87
D2V4, binary
                cls
clus              0  1
  TP53 MUTATED    8 15
  TP53 WILD-TYPE 38 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      8   15
  TP53 WILD-TYPE   38   76
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE            8             38
  MALE             15             76
                vv
clus              M0  M1 M1A M1B M1C
  TP53 MUTATED    19   0   0   0   0
  TP53 WILD-TYPE 100   1   1   2   1
D2V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TP53 MUTATED    9  0   3   3  1   1   1   0  1  0
  TP53 WILD-TYPE 62  2   3   8  0   3   9   4 14  1
D2V6, multiclass
D2V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TP53 MUTATED             0       2        3        1        1         1
  TP53 WILD-TYPE           1      13        5       11       15         5
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  TP53 MUTATED           1         0         1          2          6          1
  TP53 WILD-TYPE         6         4         6          3         10         18
                vv
clus             STAGE IV
  TP53 MUTATED          0
  TP53 WILD-TYPE        3
D2V8, multiclass

Clustering(3) Variable = BRAF MUTATION ANALYSIS
D3V1, survival
                sevent
clus2             0  1
  BRAF MUTATED   17 22
  BRAF WILD-TYPE 15 22
  BRAF MUTATED BRAF WILD-TYPE 
            39             37 
  BRAF MUTATED BRAF WILD-TYPE 
            22             22 
$`BRAF MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J9 TCGA-D3-A2JD 
       32.55        70.16        98.76        22.55        21.14        11.41 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D9-A3Z3 TCGA-DA-A1HW 
        6.35        15.25        13.32         9.30         2.86        35.80 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 
       51.12        10.03        13.68         9.99        36.69        25.15 
TCGA-DA-A1IB TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A20B 
       22.36        17.56        14.83         1.12        12.20        36.07 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29P 
        5.13        37.97        38.63         4.41         9.47        12.03 
TCGA-EE-A2A0 TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19M TCGA-FS-A1ZR 
       11.31         8.94        11.11         4.18        28.64         8.81 
TCGA-FW-A3R5 TCGA-GN-A262 TCGA-GN-A265 
        1.02        24.85        84.72 

$`BRAF WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A3CC TCGA-D3-A3CF 
       16.47        28.08        10.26         8.38        45.70        24.00 
TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A1IC TCGA-DA-A3F2 
        5.39         4.01        48.79        39.19         6.64        19.36 
TCGA-DA-A3F3 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A185 TCGA-EE-A29D TCGA-EE-A29L 
        7.00        11.57         6.31         4.27        11.15         1.08 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.12         8.84         9.99         8.09        25.28        23.90 
TCGA-EE-A2A5 TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        9.67         3.52        12.99        42.84        78.44         6.58 
TCGA-GN-A261 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       15.35        31.33        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  BRAF MUTATED BRAF WILD-TYPE 
          1.02           1.08 
  BRAF MUTATED BRAF WILD-TYPE 
         98.76          78.44 
  BRAF MUTATED BRAF WILD-TYPE 
         13.68          11.57 
[1] "1.0 - 98.8 (13.7)" "1.1 - 78.4 (11.6)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
[1] "hr=" "1.3"
D3V2, continuous
D3V3, binary
                cls
clus              0  1
  BRAF MUTATED   14 59
  BRAF WILD-TYPE 18 46
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     14   59
  BRAF WILD-TYPE   18   46
                                                                                          clus
vv                                                                                         BRAF MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           14
  REGIONAL LYMPH NODE                                                                                59
                                                                                          clus
vv                                                                                         BRAF WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             18
  REGIONAL LYMPH NODE                                                                                  46
D3V4, binary
                cls
clus              0  1
  BRAF MUTATED   23 50
  BRAF WILD-TYPE 23 41
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     23   50
  BRAF WILD-TYPE   23   41
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE           23             23
  MALE             50             41
                vv
clus             M0 M1 M1A M1B M1C
  BRAF MUTATED   62  1   1   1   1
  BRAF WILD-TYPE 57  0   0   1   0
D3V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  BRAF MUTATED   36  1   1   7  1   3   6   3  7  1
  BRAF WILD-TYPE 35  1   5   4  0   1   4   1  8  0
D3V6, multiclass
D3V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  BRAF MUTATED             1       9        3        5       10         3
  BRAF WILD-TYPE           0       6        5        7        6         3
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  BRAF MUTATED           1         2         6          2          8          9
  BRAF WILD-TYPE         6         2         1          3          8         10
                vv
clus             STAGE IV
  BRAF MUTATED          2
  BRAF WILD-TYPE        1
D3V8, multiclass

Clustering(4) Variable = C15ORF23 MUTATION ANALYSIS
D4V1, survival
                    sevent
clus2                 0  1
  C15ORF23 MUTATED    1  4
  C15ORF23 WILD-TYPE 31 40
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                 5                 71 
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                 4                 40 
$`C15ORF23 MUTATED`
TCGA-D3-A2JD TCGA-DA-A1IC TCGA-EE-A181 TCGA-EE-A2A2 TCGA-GN-A266 
       11.41         6.64         1.12        23.90        10.09 

$`C15ORF23 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       10.26         8.38        21.14         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 
        9.99        36.69        25.15        22.36        19.36         7.00 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 
       17.56        14.83        11.57         6.31        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
       36.07         5.13        37.97        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        1.08         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
        8.09        11.31        25.28         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        6.58         8.81         1.02        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        16.21        15.39        12.16        14.70 

  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
              1.12               1.02 
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
             23.90              98.76 
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
             10.09              13.32 
[1] "1.1 - 23.9 (10.1)" "1.0 - 98.8 (13.3)"
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A26D 
"C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A26D 
"C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A26D 
"C15ORF23 WILD-TYPE" 
[1] "hr=" "2.6"
D4V2, continuous
D4V3, binary
                    cls
clus                  0  1
  C15ORF23 MUTATED    3  7
  C15ORF23 WILD-TYPE 29 98
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C15ORF23 MUTATED      3    7
  C15ORF23 WILD-TYPE   29   98
                                                                                          clus
vv                                                                                         C15ORF23 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                3
  REGIONAL LYMPH NODE                                                                                     7
                                                                                          clus
vv                                                                                         C15ORF23 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 29
  REGIONAL LYMPH NODE                                                                                      98
D4V4, binary
                    cls
clus                  0  1
  C15ORF23 MUTATED    3  7
  C15ORF23 WILD-TYPE 43 84
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C15ORF23 MUTATED      3    7
  C15ORF23 WILD-TYPE   43   84
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  FEMALE                3                 43
  MALE                  7                 84
                    vv
clus                  M0  M1 M1A M1B M1C
  C15ORF23 MUTATED     9   0   0   0   0
  C15ORF23 WILD-TYPE 110   1   1   2   1
D4V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  C15ORF23 MUTATED    6  0   0   2  0   0   0   1  0  0
  C15ORF23 WILD-TYPE 65  2   6   9  1   4  10   3 15  1
D4V6, multiclass
D4V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  C15ORF23 MUTATED             0       2        0        0        2         0
  C15ORF23 WILD-TYPE           1      13        8       12       14         6
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  C15ORF23 MUTATED           2         0         0          0          2
  C15ORF23 WILD-TYPE         5         4         7          5         14
                    vv
clus                 STAGE IIIC STAGE IV
  C15ORF23 MUTATED            1        0
  C15ORF23 WILD-TYPE         18        3
D4V8, multiclass

Clustering(5) Variable = ERVFRDE1 MUTATION ANALYSIS
D5V1, survival
                    sevent
clus2                 0  1
  ERVFRDE1 MUTATED    1  1
  ERVFRDE1 WILD-TYPE 31 43
  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
                 2                 74 
  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
                 1                 43 
$`ERVFRDE1 MUTATED`
TCGA-FW-A3R5 TCGA-GN-A266 
        1.02        10.09 

$`ERVFRDE1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
        1.12        12.20         4.27        36.07         5.13        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
       11.15        38.63         4.41         1.08         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.12         8.84         9.99         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       15.35        24.85        31.33        84.72        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
              1.02               1.08 
  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
             10.09              98.76 
  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
             5.555             13.155 
[1] "1.0 - 10.1 (5.6)"  "1.1 - 98.8 (13.2)"
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "ERVFRDE1 MUTATED" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE"   "ERVFRDE1 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A26D 
"ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "ERVFRDE1 MUTATED" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE"   "ERVFRDE1 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A26D 
"ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "ERVFRDE1 MUTATED" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE"   "ERVFRDE1 MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A26D 
"ERVFRDE1 WILD-TYPE" 
[1] "Remove cluster labels:" "ERVFRDE1 MUTATED"      
clus
  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
                 2                 74 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A261         TCGA-GN-A262         TCGA-GN-A264 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A265         TCGA-GN-A267         TCGA-GN-A268 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
D5V2, continuous
D5V3, binary
                    cls
clus                   0   1
  ERVFRDE1 MUTATED     1   2
  ERVFRDE1 WILD-TYPE  31 103
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ERVFRDE1 MUTATED      1    2
  ERVFRDE1 WILD-TYPE   31  103
                                                                                          clus
vv                                                                                         ERVFRDE1 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                1
  REGIONAL LYMPH NODE                                                                                     2
                                                                                          clus
vv                                                                                         ERVFRDE1 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 31
  REGIONAL LYMPH NODE                                                                                     103
D5V4, binary
                    cls
clus                  0  1
  ERVFRDE1 MUTATED    0  3
  ERVFRDE1 WILD-TYPE 46 88
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ERVFRDE1 MUTATED      0    3
  ERVFRDE1 WILD-TYPE   46   88
        clus
vv       ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE
  FEMALE                0                 46
  MALE                  3                 88
                    vv
clus                  M0  M1 M1A M1B M1C
  ERVFRDE1 MUTATED     2   0   0   0   0
  ERVFRDE1 WILD-TYPE 117   1   1   2   1
D5V5, multiclass
[1] "Remove cluster labels:" "ERVFRDE1 MUTATED"      
clus
  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
                 2                122 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IB 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1IC         TCGA-DA-A3F2         TCGA-DA-A3F3 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A3F5         TCGA-DA-A3F8         TCGA-EE-A17X 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A17Z         TCGA-EE-A181         TCGA-EE-A183 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29C         TCGA-EE-A29D         TCGA-EE-A29E 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29H         TCGA-EE-A29L         TCGA-EE-A29N 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29X         TCGA-EE-A2A0 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2A1         TCGA-EE-A2A2         TCGA-EE-A2A5 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2A6         TCGA-EE-A2GB         TCGA-EE-A2GC 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GD         TCGA-EE-A2GE         TCGA-EE-A2GH 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GI         TCGA-EE-A2GJ         TCGA-EE-A2GK 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GL         TCGA-EE-A2GM         TCGA-EE-A2GN 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GO         TCGA-EE-A2GP         TCGA-EE-A2GR 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GS         TCGA-EE-A2GT         TCGA-EE-A2GU 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2M5         TCGA-EE-A2M6         TCGA-EE-A2M7 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2M8         TCGA-EE-A2MC         TCGA-EE-A2MD 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2ME         TCGA-EE-A2MG         TCGA-EE-A2MI 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AE 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19M         TCGA-ER-A19O 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1YW 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1Z4         TCGA-FS-A1ZD 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1ZG         TCGA-FS-A1ZH         TCGA-FS-A1ZM 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1ZP         TCGA-FS-A1ZR         TCGA-FS-A1ZS 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-GN-A261         TCGA-GN-A267 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A268         TCGA-GN-A26A 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  ERVFRDE1 MUTATED    1  0   0   0  1   0   0   0  0  0
  ERVFRDE1 WILD-TYPE 70  2   6  11  0   4  10   4 15  1
D5V6, multiclass
[1] "Remove cluster labels:" "ERVFRDE1 MUTATED"      
clus
  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
                 2                123 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A148 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D9-A149         TCGA-D9-A1JW         TCGA-D9-A1JX 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D9-A3Z1         TCGA-D9-A3Z3         TCGA-DA-A1HV 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I0 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I1         TCGA-DA-A1I2         TCGA-DA-A1I4 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IB 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1IC         TCGA-DA-A3F2         TCGA-DA-A3F3 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A3F5         TCGA-DA-A3F8         TCGA-EE-A17X 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A17Z         TCGA-EE-A181         TCGA-EE-A183 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20B         TCGA-EE-A20F 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29C         TCGA-EE-A29D         TCGA-EE-A29E 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29H         TCGA-EE-A29L         TCGA-EE-A29N 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29P         TCGA-EE-A29Q         TCGA-EE-A29R 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A29X         TCGA-EE-A2A0 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2A1         TCGA-EE-A2A2         TCGA-EE-A2A5 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2A6         TCGA-EE-A2GB         TCGA-EE-A2GC 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GD         TCGA-EE-A2GE         TCGA-EE-A2GH 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GI         TCGA-EE-A2GJ         TCGA-EE-A2GK 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GL         TCGA-EE-A2GM         TCGA-EE-A2GN 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GO         TCGA-EE-A2GP         TCGA-EE-A2GR 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GS         TCGA-EE-A2GT         TCGA-EE-A2GU 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2M5         TCGA-EE-A2M6         TCGA-EE-A2M7 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2M8         TCGA-EE-A2MC         TCGA-EE-A2MD 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2ME         TCGA-EE-A2MG         TCGA-EE-A2MI 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MJ         TCGA-EE-A2MK         TCGA-EE-A2ML 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MM         TCGA-EE-A2MN         TCGA-EE-A2MP 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MQ         TCGA-EE-A2MR         TCGA-EE-A2MS 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MT         TCGA-EE-A2MU         TCGA-EE-A3AE 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A3AH         TCGA-ER-A19D         TCGA-ER-A19F 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19M         TCGA-ER-A19O 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1YW 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1Z4         TCGA-FS-A1ZD 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1ZG         TCGA-FS-A1ZH         TCGA-FS-A1ZM 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1ZP         TCGA-FS-A1ZR         TCGA-FS-A1ZS 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-GN-A261         TCGA-GN-A267 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A268         TCGA-GN-A26A         TCGA-GN-A26D 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
D5V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ERVFRDE1 MUTATED             0       0        0        0        1         0
  ERVFRDE1 WILD-TYPE           1      15        8       12       15         6
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ERVFRDE1 MUTATED           0         0         1          0          0
  ERVFRDE1 WILD-TYPE         7         4         6          5         16
                    vv
clus                 STAGE IIIC STAGE IV
  ERVFRDE1 MUTATED            0        0
  ERVFRDE1 WILD-TYPE         19        3
D5V8, multiclass
[1] "Remove cluster labels:" "ERVFRDE1 MUTATED"      
clus
  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
                 2                117 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29P         TCGA-EE-A29Q 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29R         TCGA-EE-A29S         TCGA-EE-A29X 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MI         TCGA-EE-A2MJ         TCGA-EE-A2MK 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2ML         TCGA-EE-A2MM         TCGA-EE-A2MN 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MP         TCGA-EE-A2MQ         TCGA-EE-A2MR 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MS         TCGA-EE-A2MT         TCGA-EE-A2MU 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A3AE         TCGA-EE-A3AH         TCGA-ER-A19D 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19M         TCGA-ER-A19O 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1YW 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1YX         TCGA-FS-A1Z4         TCGA-FS-A1ZD 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1ZG         TCGA-FS-A1ZH         TCGA-FS-A1ZM 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1ZP         TCGA-FS-A1ZR         TCGA-FS-A1ZS 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1ZW         TCGA-GN-A261         TCGA-GN-A267 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A268         TCGA-GN-A26A         TCGA-GN-A26D 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 

Clustering(6) Variable = NRAS MUTATION ANALYSIS
D6V1, survival
                sevent
clus2             0  1
  NRAS MUTATED   10 12
  NRAS WILD-TYPE 22 32
  NRAS MUTATED NRAS WILD-TYPE 
            22             54 
  NRAS MUTATED NRAS WILD-TYPE 
            12             32 
$`NRAS MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-DA-A1HV 
       16.47        28.08         8.38         5.39         4.01        48.79 
TCGA-DA-A1I1 TCGA-DA-A3F3 TCGA-EE-A17X TCGA-EE-A185 TCGA-EE-A29L TCGA-EE-A29Q 
       39.19         7.00        11.57         4.27         1.08         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        8.84         9.99         8.09        25.28        23.90         9.67 
TCGA-ER-A19D TCGA-ER-A19N TCGA-GN-A267 TCGA-GN-A268 
        3.52        42.84        16.21        15.39 

$`NRAS WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J9 
       32.55        70.16        98.76        22.55        10.26        21.14 
TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF 
       11.41         6.35        15.25        45.70        13.32        24.00 
TCGA-D3-A3MO TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 
        9.30         2.86        35.80        51.12        10.03        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A20B 
       17.56        14.83         6.31         1.12        12.20        36.07 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29N 
        5.13        37.97        11.15        38.63         4.41         9.47 
TCGA-EE-A29P TCGA-EE-A2A0 TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       12.03        11.31         8.94        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A261 
       28.64        78.44         6.58         8.81         1.02        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A26A TCGA-GN-A26D 
       24.85        31.33        84.72        10.09        12.16        14.70 

  NRAS MUTATED NRAS WILD-TYPE 
          1.08           1.02 
  NRAS MUTATED NRAS WILD-TYPE 
         48.79          98.76 
  NRAS MUTATED NRAS WILD-TYPE 
          9.83          13.50 
[1] "1.1 - 48.8 (9.8)"  "1.0 - 98.8 (13.5)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
  "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
  "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
  "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
  "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
  "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
  "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
  "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
  "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
  "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous
D6V3, binary
                cls
clus              0  1
  NRAS MUTATED   10 29
  NRAS WILD-TYPE 22 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED     10   29
  NRAS WILD-TYPE   22   76
                                                                                          clus
vv                                                                                         NRAS MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           10
  REGIONAL LYMPH NODE                                                                                29
                                                                                          clus
vv                                                                                         NRAS WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             22
  REGIONAL LYMPH NODE                                                                                  76
D6V4, binary
                cls
clus              0  1
  NRAS MUTATED   14 25
  NRAS WILD-TYPE 32 66
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED     14   25
  NRAS WILD-TYPE   32   66
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  FEMALE           14             32
  MALE             25             66
                vv
clus             M0 M1 M1A M1B M1C
  NRAS MUTATED   36  0   0   1   0
  NRAS WILD-TYPE 83  1   1   1   1
D6V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  NRAS MUTATED   23  0   3   2  0   1   2   0  6  0
  NRAS WILD-TYPE 48  2   3   9  1   3   8   4  9  1
D6V6, multiclass
D6V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  NRAS MUTATED             0       3        4        6        3         3
  NRAS WILD-TYPE           1      12        4        6       13         3
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  NRAS MUTATED           3         1         0          1          6          6
  NRAS WILD-TYPE         4         3         7          4         10         13
                vv
clus             STAGE IV
  NRAS MUTATED          1
  NRAS WILD-TYPE        2
D6V8, multiclass

Clustering(7) Variable = PTEN MUTATION ANALYSIS
D7V1, survival
                sevent
clus2             0  1
  PTEN MUTATED    2  5
  PTEN WILD-TYPE 30 39
  PTEN MUTATED PTEN WILD-TYPE 
             7             69 
  PTEN MUTATED PTEN WILD-TYPE 
             5             39 
$`PTEN MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-EE-A17Z TCGA-EE-A29P 
       98.76         8.38         6.35        15.25         6.31        12.03 
TCGA-ER-A19J 
        4.18 

$`PTEN WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        70.16        28.08        22.55        10.26 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO 
       21.14        11.41        45.70        13.32        24.00         9.30 
TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
        5.39         4.01         2.86        48.79        35.80        51.12 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 
       10.03        39.19        13.68         9.99        36.69        25.15 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       11.57         1.12        12.20         4.27        36.07         5.13 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
       37.97        11.15        38.63         4.41         1.08         9.47 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.12         8.84         9.99         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L 
       23.90         9.67         8.94         3.52        11.11        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 
       28.64        42.84        78.44         6.58         8.81         1.02 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       15.35        24.85        31.33        84.72        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  PTEN MUTATED PTEN WILD-TYPE 
          4.18           1.02 
  PTEN MUTATED PTEN WILD-TYPE 
         98.76          84.72 
  PTEN MUTATED PTEN WILD-TYPE 
          8.38          13.32 
[1] "4.2 - 98.8 (8.4)"  "1.0 - 84.7 (13.3)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
[1] "hr=" "1.8"
D7V2, continuous
D7V3, binary
                cls
clus              0  1
  PTEN MUTATED    1 11
  PTEN WILD-TYPE 31 94
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      1   11
  PTEN WILD-TYPE   31   94
                                                                                          clus
vv                                                                                         PTEN MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                11
                                                                                          clus
vv                                                                                         PTEN WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  94
D7V4, binary
                cls
clus              0  1
  PTEN MUTATED    5  7
  PTEN WILD-TYPE 41 84
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      5    7
  PTEN WILD-TYPE   41   84
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE            5             41
  MALE              7             84
                vv
clus              M0  M1 M1A M1B M1C
  PTEN MUTATED    11   1   0   0   0
  PTEN WILD-TYPE 108   0   1   2   1
D7V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PTEN MUTATED   10  0   0   0  0   0   1   0  1  0
  PTEN WILD-TYPE 61  2   6  11  1   4   9   4 14  1
D7V6, multiclass
D7V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PTEN MUTATED             0       0        1        4        1         2
  PTEN WILD-TYPE           1      15        7        8       15         4
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  PTEN MUTATED           1         1         0          0          0          1
  PTEN WILD-TYPE         6         3         7          5         16         18
                vv
clus             STAGE IV
  PTEN MUTATED          1
  PTEN WILD-TYPE        2
D7V8, multiclass

Clustering(8) Variable = PPP6C MUTATION ANALYSIS
D8V1, survival
                 sevent
clus2              0  1
  PPP6C MUTATED    6  2
  PPP6C WILD-TYPE 26 42
  PPP6C MUTATED PPP6C WILD-TYPE 
              8              68 
  PPP6C MUTATED PPP6C WILD-TYPE 
              2              42 
$`PPP6C MUTATED`
TCGA-D3-A3MV TCGA-DA-A1I1 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A29L TCGA-EE-A29R 
        5.39        39.19        17.56        14.83         1.08         8.84 
TCGA-FW-A3R5 TCGA-GN-A267 
        1.02        16.21 

$`PPP6C WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       45.70        13.32        24.00         9.30         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 
       48.79        35.80        51.12        10.03        13.68         9.99 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15        22.36         6.64        19.36         7.00 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.12        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29N 
        5.13        37.97        11.15        38.63         4.41         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       12.03         8.12         9.99         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A268 
       15.35        24.85        31.33        84.72        10.09        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  PPP6C MUTATED PPP6C WILD-TYPE 
           1.02            1.12 
  PPP6C MUTATED PPP6C WILD-TYPE 
          39.19           98.76 
  PPP6C MUTATED PPP6C WILD-TYPE 
         11.835          12.595 
[1] "1.0 - 39.2 (11.8)" "1.1 - 98.8 (12.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
  "PPP6C MUTATED"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
  "PPP6C MUTATED"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
  "PPP6C MUTATED"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
  "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
[1] "hr=" "1.8"
D8V2, continuous
D8V3, binary
                 cls
clus               0  1
  PPP6C MUTATED    4 10
  PPP6C WILD-TYPE 28 95
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PPP6C MUTATED      4   10
  PPP6C WILD-TYPE   28   95
                                                                                          clus
vv                                                                                         PPP6C MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             4
  REGIONAL LYMPH NODE                                                                                 10
                                                                                          clus
vv                                                                                         PPP6C WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              28
  REGIONAL LYMPH NODE                                                                                   95
D8V4, binary
                 cls
clus               0  1
  PPP6C MUTATED    5  9
  PPP6C WILD-TYPE 41 82
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PPP6C MUTATED      5    9
  PPP6C WILD-TYPE   41   82
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  FEMALE             5              41
  MALE               9              82
                 vv
clus               M0  M1 M1A M1B M1C
  PPP6C MUTATED    13   0   0   0   1
  PPP6C WILD-TYPE 106   1   1   2   0
D8V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PPP6C MUTATED    4  0   2   1  1   1   1   1  3  0
  PPP6C WILD-TYPE 67  2   4  10  0   3   9   3 12  1
D8V6, multiclass
D8V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PPP6C MUTATED             0       1        0        0        1         0
  PPP6C WILD-TYPE           1      14        8       12       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PPP6C MUTATED           1         1         1          1          3
  PPP6C WILD-TYPE         6         3         6          4         13
                 vv
clus              STAGE IIIC STAGE IV
  PPP6C MUTATED            4        1
  PPP6C WILD-TYPE         15        2
D8V8, multiclass

Clustering(9) Variable = PRB4 MUTATION ANALYSIS
D9V1, survival
                sevent
clus2             0  1
  PRB4 MUTATED    6  3
  PRB4 WILD-TYPE 26 41
  PRB4 MUTATED PRB4 WILD-TYPE 
             9             67 
  PRB4 MUTATED PRB4 WILD-TYPE 
             3             41 
$`PRB4 MUTATED`
TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29P TCGA-EE-A2A1 TCGA-ER-A19F 
       14.83         1.12        11.15        12.03        25.28        11.11 
TCGA-ER-A19N TCGA-FW-A3R5 TCGA-GN-A265 
       42.84         1.02        84.72 

$`PRB4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 
       19.36         7.00        17.56        11.57         6.31        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
        4.27        36.07         5.13        37.97        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X 
        1.08         9.47         8.12         8.84         9.99         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19J 
       11.31        23.90         9.67         8.94         3.52         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 
       12.99        28.64        78.44         6.58         8.81        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       24.85        31.33        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  PRB4 MUTATED PRB4 WILD-TYPE 
          1.02           1.08 
  PRB4 MUTATED PRB4 WILD-TYPE 
         84.72          98.76 
  PRB4 MUTATED PRB4 WILD-TYPE 
         12.03          12.99 
[1] "1.0 - 84.7 (12.0)" "1.1 - 98.8 (13.0)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
[1] "hr=" "1.9"
D9V2, continuous
D9V3, binary
                cls
clus              0  1
  PRB4 MUTATED    1 15
  PRB4 WILD-TYPE 31 90
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB4 MUTATED      1   15
  PRB4 WILD-TYPE   31   90
                                                                                          clus
vv                                                                                         PRB4 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                15
                                                                                          clus
vv                                                                                         PRB4 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  90
D9V4, binary
                cls
clus              0  1
  PRB4 MUTATED    3 13
  PRB4 WILD-TYPE 43 78
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB4 MUTATED      3   13
  PRB4 WILD-TYPE   43   78
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  FEMALE            3             43
  MALE             13             78
                vv
clus              M0  M1 M1A M1B M1C
  PRB4 MUTATED    14   0   0   0   0
  PRB4 WILD-TYPE 105   1   1   2   1
D9V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PRB4 MUTATED   11  0   0   1  1   0   1   0  0  0
  PRB4 WILD-TYPE 60  2   6  10  0   4   9   4 15  1
D9V6, multiclass
D9V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PRB4 MUTATED             0       3        1        1        3         0
  PRB4 WILD-TYPE           1      12        7       11       13         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  PRB4 MUTATED           1         1         1          0          1          1
  PRB4 WILD-TYPE         6         3         6          5         15         18
                vv
clus             STAGE IV
  PRB4 MUTATED          0
  PRB4 WILD-TYPE        3
D9V8, multiclass

Clustering(10) Variable = RAC1 MUTATION ANALYSIS
D10V1, survival
                sevent
clus2             0  1
  RAC1 MUTATED    2  3
  RAC1 WILD-TYPE 30 41
  RAC1 MUTATED RAC1 WILD-TYPE 
             5             71 
  RAC1 MUTATED RAC1 WILD-TYPE 
             3             41 
$`RAC1 MUTATED`
TCGA-D9-A3Z1 TCGA-EE-A181 TCGA-EE-A29D TCGA-ER-A1A1 TCGA-GN-A266 
        4.01         1.12        11.15        78.44        10.09 

$`RAC1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z3 
       45.70        13.32        24.00         9.30         5.39         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 
        7.00        17.56        14.83        11.57         6.31        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
        4.27        36.07         5.13        37.97        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        1.08         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        6.58         8.81         1.02        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        16.21        15.39        12.16        14.70 

  RAC1 MUTATED RAC1 WILD-TYPE 
          1.12           1.02 
  RAC1 MUTATED RAC1 WILD-TYPE 
         78.44          98.76 
  RAC1 MUTATED RAC1 WILD-TYPE 
         10.09          13.32 
[1] "1.1 - 78.4 (10.1)" "1.0 - 98.8 (13.3)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
[1] "hr=" "1.4"
D10V2, continuous
D10V3, binary
                cls
clus              0  1
  RAC1 MUTATED    2  7
  RAC1 WILD-TYPE 30 98
[1] "tbl2"
                cls
clus             [,1] [,2]
  RAC1 MUTATED      2    7
  RAC1 WILD-TYPE   30   98
                                                                                          clus
vv                                                                                         RAC1 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            2
  REGIONAL LYMPH NODE                                                                                 7
                                                                                          clus
vv                                                                                         RAC1 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             30
  REGIONAL LYMPH NODE                                                                                  98
D10V4, binary
                cls
clus              0  1
  RAC1 MUTATED    2  7
  RAC1 WILD-TYPE 44 84
[1] "tbl2"
                cls
clus             [,1] [,2]
  RAC1 MUTATED      2    7
  RAC1 WILD-TYPE   44   84
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  FEMALE            2             44
  MALE              7             84
                vv
clus              M0  M1 M1A M1B M1C
  RAC1 MUTATED     7   0   0   0   0
  RAC1 WILD-TYPE 112   1   1   2   1
D10V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  RAC1 MUTATED    4  0   0   1  0   0   0   0  2  0
  RAC1 WILD-TYPE 67  2   6  10  1   4  10   4 13  1
D10V6, multiclass
D10V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RAC1 MUTATED             0       1        0        0        2         0
  RAC1 WILD-TYPE           1      14        8       12       14         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  RAC1 MUTATED           0         1         0          0          0          3
  RAC1 WILD-TYPE         7         3         7          5         16         16
                vv
clus             STAGE IV
  RAC1 MUTATED          0
  RAC1 WILD-TYPE        3
D10V8, multiclass

Clustering(11) Variable = CDH9 MUTATION ANALYSIS
D11V1, survival
                sevent
clus2             0  1
  CDH9 MUTATED    6  6
  CDH9 WILD-TYPE 26 38
  CDH9 MUTATED CDH9 WILD-TYPE 
            12             64 
  CDH9 MUTATED CDH9 WILD-TYPE 
             6             38 
$`CDH9 MUTATED`
TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A20B TCGA-EE-A29D TCGA-EE-A29E 
       17.56        11.57         1.12        36.07        11.15        38.63 
TCGA-EE-A29L TCGA-EE-A2A0 TCGA-EE-A2A6 TCGA-ER-A19N TCGA-FW-A3R5 TCGA-GN-A268 
        1.08        11.31         8.94        42.84         1.02        15.39 

$`CDH9 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 
       19.36         7.00        14.83         6.31        12.20         4.27 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
        5.13        37.97         4.41         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        8.84         9.99         8.09        25.28        23.90         9.67 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 
        3.52        11.11         4.18        12.99        28.64        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        6.58         8.81        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        12.16        14.70 

  CDH9 MUTATED CDH9 WILD-TYPE 
          1.02           2.86 
  CDH9 MUTATED CDH9 WILD-TYPE 
         42.84          98.76 
  CDH9 MUTATED CDH9 WILD-TYPE 
        11.440         13.155 
[1] "1.0 - 42.8 (11.4)" "2.9 - 98.8 (13.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
  "CDH9 MUTATED" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
  "CDH9 MUTATED" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
  "CDH9 MUTATED" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
[1] "hr=" "1.1"
D11V2, continuous
D11V3, binary
                cls
clus              0  1
  CDH9 MUTATED    1 22
  CDH9 WILD-TYPE 31 83
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED      1   22
  CDH9 WILD-TYPE   31   83
                                                                                          clus
vv                                                                                         CDH9 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                22
                                                                                          clus
vv                                                                                         CDH9 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  83
D11V4, binary
                cls
clus              0  1
  CDH9 MUTATED    7 16
  CDH9 WILD-TYPE 39 75
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED      7   16
  CDH9 WILD-TYPE   39   75
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  FEMALE            7             39
  MALE             16             75
                vv
clus             M0 M1 M1A M1B M1C
  CDH9 MUTATED   22  0   0   0   0
  CDH9 WILD-TYPE 97  1   1   2   1
D11V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CDH9 MUTATED   16  0   0   2  1   1   0   0  2  0
  CDH9 WILD-TYPE 55  2   6   9  0   3  10   4 13  1
D11V6, multiclass
D11V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CDH9 MUTATED             0       4        4        0        4         2
  CDH9 WILD-TYPE           1      11        4       12       12         4
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  CDH9 MUTATED           2         0         1          0          1          3
  CDH9 WILD-TYPE         5         4         6          5         15         16
                vv
clus             STAGE IV
  CDH9 MUTATED          0
  CDH9 WILD-TYPE        3
D11V8, multiclass

Clustering(12) Variable = STK19 MUTATION ANALYSIS
D12V1, survival
                 sevent
clus2              0  1
  STK19 MUTATED    2  4
  STK19 WILD-TYPE 30 40
  STK19 MUTATED STK19 WILD-TYPE 
              6              70 
  STK19 MUTATED STK19 WILD-TYPE 
              4              40 
$`STK19 MUTATED`
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-GN-A266 
        2.86        48.79         1.12        12.20         4.27        10.09 

$`STK19 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       35.80        51.12        10.03        39.19        13.68         9.99 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A20B TCGA-EE-A20F 
       17.56        14.83        11.57         6.31        36.07         5.13 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
       37.97        11.15        38.63         4.41         1.08         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 
       12.03         8.12         8.84         9.99         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        8.81         1.02        15.35        24.85        31.33        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  STK19 MUTATED STK19 WILD-TYPE 
           1.12            1.02 
  STK19 MUTATED STK19 WILD-TYPE 
          48.79           98.76 
  STK19 MUTATED STK19 WILD-TYPE 
           7.18           13.50 
[1] "1.1 - 48.8 (7.2)"  "1.0 - 98.8 (13.5)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED"   "STK19 MUTATED" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "STK19 MUTATED"   "STK19 MUTATED"   "STK19 MUTATED" "STK19 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED"   "STK19 MUTATED" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "STK19 MUTATED"   "STK19 MUTATED"   "STK19 MUTATED" "STK19 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED"   "STK19 MUTATED" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "STK19 MUTATED"   "STK19 MUTATED"   "STK19 MUTATED" "STK19 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
[1] "hr=" "2"  
D12V2, continuous
D12V3, binary
                 cls
clus               0  1
  STK19 MUTATED    2  7
  STK19 WILD-TYPE 30 98
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK19 MUTATED      2    7
  STK19 WILD-TYPE   30   98
                                                                                          clus
vv                                                                                         STK19 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  7
                                                                                          clus
vv                                                                                         STK19 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   98
D12V4, binary
                 cls
clus               0  1
  STK19 MUTATED    4  5
  STK19 WILD-TYPE 42 86
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK19 MUTATED      4    5
  STK19 WILD-TYPE   42   86
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  FEMALE             4              42
  MALE               5              86
                 vv
clus               M0  M1 M1A M1B M1C
  STK19 MUTATED     8   0   0   0   0
  STK19 WILD-TYPE 111   1   1   2   1
D12V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  STK19 MUTATED    5  0   0   1  0   0   1   0  1  0
  STK19 WILD-TYPE 66  2   6  10  1   4   9   4 14  1
D12V6, multiclass
D12V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  STK19 MUTATED             0       2        1        0        1         0
  STK19 WILD-TYPE           1      13        7       12       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  STK19 MUTATED           1         0         0          0          2
  STK19 WILD-TYPE         6         4         7          5         14
                 vv
clus              STAGE IIIC STAGE IV
  STK19 MUTATED            1        0
  STK19 WILD-TYPE         18        3
D12V8, multiclass

Clustering(13) Variable = ADH1C MUTATION ANALYSIS
D13V1, survival
                 sevent
clus2              0  1
  ADH1C MUTATED    4  4
  ADH1C WILD-TYPE 28 40
  ADH1C MUTATED ADH1C WILD-TYPE 
              8              68 
  ADH1C MUTATED ADH1C WILD-TYPE 
              4              40 
$`ADH1C MUTATED`
TCGA-DA-A1HV TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A2A2 TCGA-FW-A3R5 
       48.79         1.12        11.15        38.63        23.90         1.02 
TCGA-GN-A266 TCGA-GN-A267 
       10.09        16.21 

$`ADH1C WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 
        7.00        17.56        14.83        11.57         6.31        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L 
        4.27        36.07         5.13        37.97         4.41         1.08 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X 
        9.47        12.03         8.12         8.84         9.99         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       11.31        25.28         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A268 
        8.81        15.35        24.85        31.33        84.72        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  ADH1C MUTATED ADH1C WILD-TYPE 
           1.02            1.08 
  ADH1C MUTATED ADH1C WILD-TYPE 
          48.79           98.76 
  ADH1C MUTATED ADH1C WILD-TYPE 
         13.680          12.595 
[1] "1.0 - 48.8 (13.7)" "1.1 - 98.8 (12.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "ADH1C MUTATED" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED"   "ADH1C MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED" "ADH1C WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED" "ADH1C WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
  "ADH1C MUTATED" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "ADH1C MUTATED" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED"   "ADH1C MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED" "ADH1C WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED" "ADH1C WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
  "ADH1C MUTATED" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "ADH1C MUTATED" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED"   "ADH1C MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED" "ADH1C WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED" "ADH1C WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE"   "ADH1C MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
  "ADH1C MUTATED" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" "ADH1C WILD-TYPE" 
[1] "hr=" "1.2"
D13V2, continuous
D13V3, binary
                 cls
clus               0  1
  ADH1C MUTATED    3 17
  ADH1C WILD-TYPE 29 88
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADH1C MUTATED      3   17
  ADH1C WILD-TYPE   29   88
                                                                                          clus
vv                                                                                         ADH1C MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                 17
                                                                                          clus
vv                                                                                         ADH1C WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   88
D13V4, binary
                 cls
clus               0  1
  ADH1C MUTATED    5 15
  ADH1C WILD-TYPE 41 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADH1C MUTATED      5   15
  ADH1C WILD-TYPE   41   76
        clus
vv       ADH1C MUTATED ADH1C WILD-TYPE
  FEMALE             5              41
  MALE              15              76
                 vv
clus               M0  M1 M1A M1B M1C
  ADH1C MUTATED    17   0   0   0   0
  ADH1C WILD-TYPE 102   1   1   2   1
D13V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  ADH1C MUTATED    9  0   2   3  1   1   1   0  0  0
  ADH1C WILD-TYPE 62  2   4   8  0   3   9   4 15  1
D13V6, multiclass
D13V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ADH1C MUTATED             0       2        0        1        3         2
  ADH1C WILD-TYPE           1      13        8       11       13         4
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ADH1C MUTATED           1         0         1          2          3
  ADH1C WILD-TYPE         6         4         6          3         13
                 vv
clus              STAGE IIIC STAGE IV
  ADH1C MUTATED            1        0
  ADH1C WILD-TYPE         18        3
D13V8, multiclass

Clustering(14) Variable = TCEB3C MUTATION ANALYSIS
D14V1, survival
                  sevent
clus2               0  1
  TCEB3C MUTATED    5  7
  TCEB3C WILD-TYPE 27 37
  TCEB3C MUTATED TCEB3C WILD-TYPE 
              12               64 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
               7               37 
$`TCEB3C MUTATED`
TCGA-D3-A2JK TCGA-D3-A3MV TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1IC TCGA-EE-A181 
        6.35         5.39         9.99        36.69         6.64         1.12 
TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29S TCGA-EE-A2A2 TCGA-ER-A19F TCGA-GN-A266 
       38.63         1.08         9.99        23.90        11.11        10.09 

$`TCEB3C WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A3C6 TCGA-D3-A3CC 
       10.26         8.38        21.14        11.41        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       13.32        24.00         9.30         4.01         2.86        48.79 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I8 
       35.80        51.12        10.03        39.19        13.68        25.15 
TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
       22.36        19.36         7.00        17.56        14.83        11.57 
TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
        6.31        12.20         4.27        36.07         5.13        37.97 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
       11.15         4.41         9.47        12.03         8.12         8.84 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
        8.09        11.31        25.28         9.67         8.94         3.52 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        8.81         1.02        15.35        24.85        31.33        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  TCEB3C MUTATED TCEB3C WILD-TYPE 
            1.08             1.02 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
           38.63            98.76 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
            9.99            14.19 
[1] "1.1 - 38.6 (10.0)" "1.0 - 98.8 (14.2)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
[1] "hr=" "1.6"
D14V2, continuous
D14V3, binary
                  cls
clus                0  1
  TCEB3C MUTATED    5 14
  TCEB3C WILD-TYPE 27 91
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCEB3C MUTATED      5   14
  TCEB3C WILD-TYPE   27   91
                                                                                          clus
vv                                                                                         TCEB3C MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              5
  REGIONAL LYMPH NODE                                                                                  14
                                                                                          clus
vv                                                                                         TCEB3C WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               27
  REGIONAL LYMPH NODE                                                                                    91
D14V4, binary
                  cls
clus                0  1
  TCEB3C MUTATED    3 16
  TCEB3C WILD-TYPE 43 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCEB3C MUTATED      3   16
  TCEB3C WILD-TYPE   43   75
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  FEMALE              3               43
  MALE               16               75
                  vv
clus                M0  M1 M1A M1B M1C
  TCEB3C MUTATED    18   0   0   0   0
  TCEB3C WILD-TYPE 101   1   1   2   1
D14V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TCEB3C MUTATED    8  0   1   2  0   2   3   1  1  0
  TCEB3C WILD-TYPE 63  2   5   9  1   2   7   3 14  1
D14V6, multiclass
D14V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TCEB3C MUTATED             0       1        0        2        3         1
  TCEB3C WILD-TYPE           1      14        8       10       13         5
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TCEB3C MUTATED           0         0         0          1          6
  TCEB3C WILD-TYPE         7         4         7          4         10
                  vv
clus               STAGE IIIC STAGE IV
  TCEB3C MUTATED            2        0
  TCEB3C WILD-TYPE         17        3
D14V8, multiclass

Clustering(15) Variable = DDX3X MUTATION ANALYSIS
D15V1, survival
                 sevent
clus2              0  1
  DDX3X MUTATED    4  2
  DDX3X WILD-TYPE 28 42
  DDX3X MUTATED DDX3X WILD-TYPE 
              6              70 
  DDX3X MUTATED DDX3X WILD-TYPE 
              2              42 
$`DDX3X MUTATED`
TCGA-D3-A2J8 TCGA-DA-A1I0 TCGA-DA-A3F8 TCGA-EE-A20B TCGA-EE-A29E TCGA-EE-A2A1 
        8.38        10.03        14.83        36.07        38.63        25.28 

$`DDX3X WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       10.26        21.14        11.41         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       48.79        35.80        51.12        39.19        13.68         9.99 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 
       17.56        11.57         6.31         1.12        12.20         4.27 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
        5.13        37.97        11.15         4.41         1.08         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 
       12.03         8.12         8.84         9.99         8.09        11.31 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        1.02        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  DDX3X MUTATED DDX3X WILD-TYPE 
           8.38            1.02 
  DDX3X MUTATED DDX3X WILD-TYPE 
          38.63           98.76 
  DDX3X MUTATED DDX3X WILD-TYPE 
         20.055          12.180 
[1] "8.4 - 38.6 (20.1)" "1.0 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
[1] "hr=" "2.3"
D15V2, continuous
D15V3, binary
                 cls
clus               0  1
  DDX3X MUTATED    5  9
  DDX3X WILD-TYPE 27 96
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DDX3X MUTATED      5    9
  DDX3X WILD-TYPE   27   96
                                                                                          clus
vv                                                                                         DDX3X MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             5
  REGIONAL LYMPH NODE                                                                                  9
                                                                                          clus
vv                                                                                         DDX3X WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              27
  REGIONAL LYMPH NODE                                                                                   96
D15V4, binary
                 cls
clus               0  1
  DDX3X MUTATED    2 12
  DDX3X WILD-TYPE 44 79
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DDX3X MUTATED      2   12
  DDX3X WILD-TYPE   44   79
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  FEMALE             2              44
  MALE              12              79
                 vv
clus               M0  M1 M1A M1B M1C
  DDX3X MUTATED    10   0   1   1   0
  DDX3X WILD-TYPE 109   1   0   1   1
D15V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DDX3X MUTATED    7  0   1   1  0   0   1   0  2  0
  DDX3X WILD-TYPE 64  2   5  10  1   4   9   4 13  1
D15V6, multiclass
D15V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DDX3X MUTATED             0       0        1        2        2         1
  DDX3X WILD-TYPE           1      15        7       10       14         5
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DDX3X MUTATED           1         0         0          0          3
  DDX3X WILD-TYPE         6         4         7          5         13
                 vv
clus              STAGE IIIC STAGE IV
  DDX3X MUTATED            1        0
  DDX3X WILD-TYPE         18        3
D15V8, multiclass

Clustering(16) Variable = TRAT1 MUTATION ANALYSIS
D16V1, survival
                 sevent
clus2              0  1
  TRAT1 MUTATED    1  6
  TRAT1 WILD-TYPE 31 38
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              7              69 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              6              38 
$`TRAT1 MUTATED`
TCGA-DA-A1IC TCGA-EE-A181 TCGA-EE-A183 TCGA-ER-A19F TCGA-FW-A3R5 TCGA-GN-A266 
        6.64         1.12        12.20        11.11         1.02        10.09 
TCGA-GN-A26A 
       12.16 

$`TRAT1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A3F2 
       13.68         9.99        36.69        25.15        22.36        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A185 
        7.00        17.56        14.83        11.57         6.31         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
       36.07         5.13        37.97        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        1.08         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
        3.52         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        6.58         8.81        15.35        24.85        31.33        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       16.21        15.39        14.70 

  TRAT1 MUTATED TRAT1 WILD-TYPE 
           1.02            1.08 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
          12.20           98.76 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
          10.09           14.70 
[1] "1.0 - 12.2 (10.1)" "1.1 - 98.8 (14.7)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "TRAT1 MUTATED"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "TRAT1 MUTATED"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "TRAT1 MUTATED"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
[1] "hr=" "4.2"
D16V2, continuous
D16V3, binary
                 cls
clus               0  1
  TRAT1 MUTATED    3  6
  TRAT1 WILD-TYPE 29 99
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRAT1 MUTATED      3    6
  TRAT1 WILD-TYPE   29   99
                                                                                          clus
vv                                                                                         TRAT1 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  6
                                                                                          clus
vv                                                                                         TRAT1 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   99
D16V4, binary
                 cls
clus               0  1
  TRAT1 MUTATED    3  6
  TRAT1 WILD-TYPE 43 85
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRAT1 MUTATED      3    6
  TRAT1 WILD-TYPE   43   85
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  FEMALE             3              43
  MALE               6              85
                 vv
clus               M0  M1 M1A M1B M1C
  TRAT1 MUTATED     8   0   0   0   0
  TRAT1 WILD-TYPE 111   1   1   2   1
D16V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TRAT1 MUTATED    5  0   1   0  1   0   0   1  0  0
  TRAT1 WILD-TYPE 66  2   5  11  0   4  10   3 15  1
D16V6, multiclass
D16V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TRAT1 MUTATED             0       1        1        1        1         0
  TRAT1 WILD-TYPE           1      14        7       11       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TRAT1 MUTATED           0         0         1          1          1
  TRAT1 WILD-TYPE         7         4         6          4         15
                 vv
clus              STAGE IIIC STAGE IV
  TRAT1 MUTATED            0        0
  TRAT1 WILD-TYPE         19        3
D16V8, multiclass

Clustering(17) Variable = TTN MUTATION ANALYSIS
D17V1, survival
               sevent
clus2            0  1
  TTN MUTATED   26 31
  TTN WILD-TYPE  6 13
  TTN MUTATED TTN WILD-TYPE 
           57            19 
  TTN MUTATED TTN WILD-TYPE 
           31            13 
$`TTN MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2JD 
       16.47        32.55        70.16        28.08         8.38        11.41 
TCGA-D3-A2JK TCGA-D3-A3CE TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
        6.35        13.32         5.39         4.01         2.86        48.79 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I7 
       35.80        51.12        10.03        39.19         9.99        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IC TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A181 
       25.15         6.64        17.56        14.83        11.57         1.12 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       12.20         4.27         5.13        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41         1.08         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        9.99        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
        3.52        11.11         4.18        28.64        42.84        78.44 
TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
        8.81         1.02        24.85        84.72        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

$`TTN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A3C6 TCGA-D3-A3CC 
       98.76        22.55        10.26        21.14        15.25        45.70 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 
       24.00         9.30        13.68        22.36        19.36         7.00 
TCGA-EE-A17Z TCGA-EE-A20B TCGA-EE-A29X TCGA-ER-A19L TCGA-ER-A3ET TCGA-GN-A261 
        6.31        36.07         8.09        12.99         6.58        15.35 
TCGA-GN-A264 
       31.33 

  TTN MUTATED TTN WILD-TYPE 
         1.02          6.31 
  TTN MUTATED TTN WILD-TYPE 
        84.72         98.76 
  TTN MUTATED TTN WILD-TYPE 
        11.57         15.35 
[1] "1.0 - 84.7 (11.6)" "6.3 - 98.8 (15.3)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-GN-A26D 
  "TTN MUTATED" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-GN-A26D 
  "TTN MUTATED" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-GN-A26D 
  "TTN MUTATED" 
[1] "hr=" "1.1"
D17V2, continuous
D17V3, binary
               cls
clus             0  1
  TTN MUTATED   25 83
  TTN WILD-TYPE  7 22
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     25   83
  TTN WILD-TYPE    7   22
                                                                                          clus
vv                                                                                         TTN MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)          25
  REGIONAL LYMPH NODE                                                                               83
                                                                                          clus
vv                                                                                         TTN WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             7
  REGIONAL LYMPH NODE                                                                                 22
D17V4, binary
               cls
clus             0  1
  TTN MUTATED   33 75
  TTN WILD-TYPE 13 16
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     33   75
  TTN WILD-TYPE   13   16
        clus
vv       TTN MUTATED TTN WILD-TYPE
  FEMALE          33            13
  MALE            75            16
               vv
clus            M0 M1 M1A M1B M1C
  TTN MUTATED   95  1   1   1   0
  TTN WILD-TYPE 24  0   0   1   1
D17V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TTN MUTATED   58  1   5  11  1   3   5   2 12  1
  TTN WILD-TYPE 13  1   1   0  0   1   5   2  3  0
D17V6, multiclass
D17V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TTN MUTATED             1      12        8        8       15         4
  TTN WILD-TYPE           0       3        0        4        1         2
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  TTN MUTATED           5         3         5          4         13         14
  TTN WILD-TYPE         2         1         2          1          3          5
               vv
clus            STAGE IV
  TTN MUTATED          2
  TTN WILD-TYPE        1
D17V8, multiclass

Clustering(18) Variable = GH2 MUTATION ANALYSIS
D18V1, survival
               sevent
clus2            0  1
  GH2 MUTATED    2  1
  GH2 WILD-TYPE 30 43
  GH2 MUTATED GH2 WILD-TYPE 
            3            73 
  GH2 MUTATED GH2 WILD-TYPE 
            1            43 
$`GH2 MUTATED`
TCGA-EE-A29P TCGA-FW-A3R5 TCGA-GN-A266 
       12.03         1.02        10.09 

$`GH2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
        1.12        12.20         4.27        36.07         5.13        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29Q 
       11.15        38.63         4.41         1.08         9.47         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 
       28.64        42.84        78.44         6.58         8.81        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       24.85        31.33        84.72        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  GH2 MUTATED GH2 WILD-TYPE 
         1.02          1.08 
  GH2 MUTATED GH2 WILD-TYPE 
        12.03         98.76 
  GH2 MUTATED GH2 WILD-TYPE 
        10.09         13.32 
[1] "1.0 - 12.0 (10.1)" "1.1 - 98.8 (13.3)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
"GH2 WILD-TYPE" "GH2 WILD-TYPE"   "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
"GH2 WILD-TYPE"   "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
"GH2 WILD-TYPE"   "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-GN-A26D 
"GH2 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
"GH2 WILD-TYPE" "GH2 WILD-TYPE"   "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
"GH2 WILD-TYPE"   "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
"GH2 WILD-TYPE"   "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-GN-A26D 
"GH2 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
"GH2 WILD-TYPE" "GH2 WILD-TYPE"   "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
"GH2 WILD-TYPE"   "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
"GH2 WILD-TYPE"   "GH2 MUTATED" "GH2 WILD-TYPE" "GH2 WILD-TYPE" "GH2 WILD-TYPE" 
   TCGA-GN-A26D 
"GH2 WILD-TYPE" 
[1] "hr=" "1.4"
D18V2, continuous
D18V3, binary
               cls
clus             0  1
  GH2 MUTATED    3  7
  GH2 WILD-TYPE 29 98
[1] "tbl2"
               cls
clus            [,1] [,2]
  GH2 MUTATED      3    7
  GH2 WILD-TYPE   29   98
                                                                                          clus
vv                                                                                         GH2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           3
  REGIONAL LYMPH NODE                                                                                7
                                                                                          clus
vv                                                                                         GH2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            29
  REGIONAL LYMPH NODE                                                                                 98
D18V4, binary
               cls
clus             0  1
  GH2 MUTATED    3  7
  GH2 WILD-TYPE 43 84
[1] "tbl2"
               cls
clus            [,1] [,2]
  GH2 MUTATED      3    7
  GH2 WILD-TYPE   43   84
        clus
vv       GH2 MUTATED GH2 WILD-TYPE
  FEMALE           3            43
  MALE             7            84
               vv
clus             M0  M1 M1A M1B M1C
  GH2 MUTATED     8   0   0   0   0
  GH2 WILD-TYPE 111   1   1   2   1
D18V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  GH2 MUTATED    6  0   0   0  1   1   0   0  0  0
  GH2 WILD-TYPE 65  2   6  11  0   3  10   4 15  1
D18V6, multiclass
D18V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GH2 MUTATED             0       0        3        0        2         0
  GH2 WILD-TYPE           1      15        5       12       14         6
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  GH2 MUTATED           0         1         1          1          0          0
  GH2 WILD-TYPE         7         3         6          4         16         19
               vv
clus            STAGE IV
  GH2 MUTATED          0
  GH2 WILD-TYPE        3
D18V8, multiclass

Clustering(19) Variable = TFEC MUTATION ANALYSIS
D19V1, survival
                sevent
clus2             0  1
  TFEC MUTATED    7  3
  TFEC WILD-TYPE 25 41
  TFEC MUTATED TFEC WILD-TYPE 
            10             66 
  TFEC MUTATED TFEC WILD-TYPE 
             3             41 
$`TFEC MUTATED`
TCGA-D3-A3MO TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29E 
        9.30        48.79        39.19         5.13        11.15        38.63 
TCGA-EE-A29R TCGA-EE-A2A2 TCGA-ER-A19M TCGA-FW-A3R5 
        8.84        23.90        28.64         1.02 

$`TFEC WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       45.70        13.32        24.00         5.39         4.01         2.86 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 
       35.80        51.12        10.03        13.68         9.99        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       25.15        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 
       14.83        11.57         6.31         1.12        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
       36.07        37.97         4.41         1.08         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 
        8.12         9.99         8.09        11.31        25.28         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
        8.94         3.52        11.11         4.18        12.99        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       78.44         6.58         8.81        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        16.21        15.39        12.16        14.70 

  TFEC MUTATED TFEC WILD-TYPE 
          1.02           1.08 
  TFEC MUTATED TFEC WILD-TYPE 
         48.79          98.76 
  TFEC MUTATED TFEC WILD-TYPE 
        17.525         12.595 
[1] "1.0 - 48.8 (17.5)" "1.1 - 98.8 (12.6)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
  "TFEC MUTATED" "TFEC WILD-TYPE"   "TFEC MUTATED"   "TFEC MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
  "TFEC MUTATED" "TFEC WILD-TYPE"   "TFEC MUTATED"   "TFEC MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
  "TFEC MUTATED" "TFEC WILD-TYPE"   "TFEC MUTATED"   "TFEC MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"TFEC WILD-TYPE" "TFEC WILD-TYPE"   "TFEC MUTATED" "TFEC WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
[1] "hr=" "2.3"
D19V2, continuous
D19V3, binary
                cls
clus              0  1
  TFEC MUTATED    3 10
  TFEC WILD-TYPE 29 95
[1] "tbl2"
                cls
clus             [,1] [,2]
  TFEC MUTATED      3   10
  TFEC WILD-TYPE   29   95
                                                                                          clus
vv                                                                                         TFEC MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            3
  REGIONAL LYMPH NODE                                                                                10
                                                                                          clus
vv                                                                                         TFEC WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             29
  REGIONAL LYMPH NODE                                                                                  95
D19V4, binary
                cls
clus              0  1
  TFEC MUTATED    3 10
  TFEC WILD-TYPE 43 81
[1] "tbl2"
                cls
clus             [,1] [,2]
  TFEC MUTATED      3   10
  TFEC WILD-TYPE   43   81
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  FEMALE            3             43
  MALE             10             81
                vv
clus              M0  M1 M1A M1B M1C
  TFEC MUTATED    12   0   0   0   0
  TFEC WILD-TYPE 107   1   1   2   1
D19V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TFEC MUTATED    4  0   0   4  1   0   1   1  1  0
  TFEC WILD-TYPE 67  2   6   7  0   4   9   3 14  1
D19V6, multiclass
D19V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TFEC MUTATED             0       0        0        1        2         0
  TFEC WILD-TYPE           1      15        8       11       14         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  TFEC MUTATED           1         0         2          0          3          3
  TFEC WILD-TYPE         6         4         5          5         13         16
                vv
clus             STAGE IV
  TFEC MUTATED          0
  TFEC WILD-TYPE        3
D19V8, multiclass

Clustering(20) Variable = IDH1 MUTATION ANALYSIS
D20V1, survival
                sevent
clus2             0  1
  IDH1 MUTATED    2  1
  IDH1 WILD-TYPE 30 43
  IDH1 MUTATED IDH1 WILD-TYPE 
             3             73 
  IDH1 MUTATED IDH1 WILD-TYPE 
             1             43 
$`IDH1 MUTATED`
TCGA-D9-A3Z1 TCGA-EE-A29P TCGA-GN-A268 
        4.01        12.03        15.39 

$`IDH1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z3 
       45.70        13.32        24.00         9.30         5.39         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
        7.00        17.56        14.83        11.57         6.31         1.12 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D 
       12.20         4.27        36.07         5.13        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R 
       38.63         4.41         1.08         9.47         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        9.99         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         1.02        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A 
       24.85        31.33        84.72        10.09        16.21        12.16 
TCGA-GN-A26D 
       14.70 

  IDH1 MUTATED IDH1 WILD-TYPE 
          4.01           1.02 
  IDH1 MUTATED IDH1 WILD-TYPE 
         15.39          98.76 
  IDH1 MUTATED IDH1 WILD-TYPE 
         12.03          12.99 
[1] "4.0 - 15.4 (12.0)" "1.0 - 98.8 (13.0)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
[1] "hr=" "1.1"
D20V2, continuous
D20V3, binary
                cls
clus              0  1
  IDH1 MUTATED    1  6
  IDH1 WILD-TYPE 31 99
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH1 MUTATED      1    6
  IDH1 WILD-TYPE   31   99
                                                                                          clus
vv                                                                                         IDH1 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                 6
                                                                                          clus
vv                                                                                         IDH1 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  99
D20V4, binary
                cls
clus              0  1
  IDH1 MUTATED    4  3
  IDH1 WILD-TYPE 42 88
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH1 MUTATED      4    3
  IDH1 WILD-TYPE   42   88
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  FEMALE            4             42
  MALE              3             88
                vv
clus              M0  M1 M1A M1B M1C
  IDH1 MUTATED     7   0   0   0   0
  IDH1 WILD-TYPE 112   1   1   2   1
D20V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  IDH1 MUTATED    5  0   0   1  0   0   0   0  1  0
  IDH1 WILD-TYPE 66  2   6  10  1   4  10   4 14  1
D20V6, multiclass
D20V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  IDH1 MUTATED             0       0        1        0        1         1
  IDH1 WILD-TYPE           1      15        7       12       15         5
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  IDH1 MUTATED           1         1         0          0          0          1
  IDH1 WILD-TYPE         6         3         7          5         16         18
                vv
clus             STAGE IV
  IDH1 MUTATED          0
  IDH1 WILD-TYPE        3
D20V8, multiclass

Clustering(21) Variable = WDR12 MUTATION ANALYSIS
D21V1, survival
                 sevent
clus2              0  1
  WDR12 MUTATED    1  4
  WDR12 WILD-TYPE 31 40
  WDR12 MUTATED WDR12 WILD-TYPE 
              5              71 
  WDR12 MUTATED WDR12 WILD-TYPE 
              4              40 
$`WDR12 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A2J8 TCGA-D3-A2JD TCGA-ER-A19F TCGA-GN-A262 
       70.16         8.38        11.41        11.11        24.85 

$`WDR12 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        98.76        28.08        22.55        10.26 
TCGA-D3-A2J9 TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF 
       21.14         6.35        15.25        45.70        13.32        24.00 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        9.30         5.39         4.01         2.86        48.79        35.80 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 
       51.12        10.03        39.19        13.68         9.99        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       25.15        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 
       14.83        11.57         6.31         1.12        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
       36.07         5.13        37.97        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        1.08         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
        3.52         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A264 TCGA-GN-A265 
        6.58         8.81         1.02        15.35        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  WDR12 MUTATED WDR12 WILD-TYPE 
           8.38            1.02 
  WDR12 MUTATED WDR12 WILD-TYPE 
          70.16           98.76 
  WDR12 MUTATED WDR12 WILD-TYPE 
          11.41           12.99 
[1] "8.4 - 70.2 (11.4)" "1.0 - 98.8 (13.0)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE"   "WDR12 MUTATED" "WDR12 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE"   "WDR12 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"WDR12 WILD-TYPE"   "WDR12 MUTATED" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE"   "WDR12 MUTATED" "WDR12 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
  "WDR12 MUTATED" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE"   "WDR12 MUTATED" "WDR12 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE"   "WDR12 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"WDR12 WILD-TYPE"   "WDR12 MUTATED" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE"   "WDR12 MUTATED" "WDR12 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
  "WDR12 MUTATED" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE"   "WDR12 MUTATED" "WDR12 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE"   "WDR12 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"WDR12 WILD-TYPE"   "WDR12 MUTATED" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE"   "WDR12 MUTATED" "WDR12 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
  "WDR12 MUTATED" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" "WDR12 WILD-TYPE" 
[1] "hr=" "1.3"
D21V2, continuous
D21V3, binary
                 cls
clus               0  1
  WDR12 MUTATED    2  7
  WDR12 WILD-TYPE 30 98
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR12 MUTATED      2    7
  WDR12 WILD-TYPE   30   98
                                                                                          clus
vv                                                                                         WDR12 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  7
                                                                                          clus
vv                                                                                         WDR12 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   98
D21V4, binary
                 cls
clus               0  1
  WDR12 MUTATED    1  8
  WDR12 WILD-TYPE 45 83
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR12 MUTATED      1    8
  WDR12 WILD-TYPE   45   83
        clus
vv       WDR12 MUTATED WDR12 WILD-TYPE
  FEMALE             1              45
  MALE               8              83
                 vv
clus               M0  M1 M1A M1B M1C
  WDR12 MUTATED     7   0   0   0   0
  WDR12 WILD-TYPE 112   1   1   2   1
D21V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  WDR12 MUTATED    5  0   0   2  0   0   0   0  0  0
  WDR12 WILD-TYPE 66  2   6   9  1   4  10   4 15  1
D21V6, multiclass
D21V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  WDR12 MUTATED             0       1        0        1        1         0
  WDR12 WILD-TYPE           1      14        8       11       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  WDR12 MUTATED           1         0         1          0          0
  WDR12 WILD-TYPE         6         4         6          5         16
                 vv
clus              STAGE IIIC STAGE IV
  WDR12 MUTATED            1        0
  WDR12 WILD-TYPE         18        3
D21V8, multiclass

Clustering(22) Variable = RGS18 MUTATION ANALYSIS
D22V1, survival
                 sevent
clus2              0  1
  RGS18 MUTATED    1  2
  RGS18 WILD-TYPE 31 42
  RGS18 MUTATED RGS18 WILD-TYPE 
              3              73 
  RGS18 MUTATED RGS18 WILD-TYPE 
              2              42 
$`RGS18 MUTATED`
TCGA-DA-A1I4 TCGA-EE-A2A1 TCGA-GN-A266 
        9.99        25.28        10.09 

$`RGS18 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       13.68        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
        7.00        17.56        14.83        11.57         6.31         1.12 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D 
       12.20         4.27        36.07         5.13        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       38.63         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 
        8.84         9.99         8.09        11.31        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         1.02        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       24.85        31.33        84.72        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  RGS18 MUTATED RGS18 WILD-TYPE 
           9.99            1.02 
  RGS18 MUTATED RGS18 WILD-TYPE 
          25.28           98.76 
  RGS18 MUTATED RGS18 WILD-TYPE 
          10.09           12.99 
[1] "10.0 - 25.3 (10.1)" "1.0 - 98.8 (13.0)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE"   "RGS18 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE"   "RGS18 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE"   "RGS18 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
[1] "hr=" "1.4"
D22V2, continuous
D22V3, binary
                 cls
clus                0   1
  RGS18 MUTATED     3   4
  RGS18 WILD-TYPE  29 101
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RGS18 MUTATED      3    4
  RGS18 WILD-TYPE   29  101
                                                                                          clus
vv                                                                                         RGS18 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  4
                                                                                          clus
vv                                                                                         RGS18 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                  101
D22V4, binary
                 cls
clus               0  1
  RGS18 MUTATED    0  7
  RGS18 WILD-TYPE 46 84
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RGS18 MUTATED      0    7
  RGS18 WILD-TYPE   46   84
        clus
vv       RGS18 MUTATED RGS18 WILD-TYPE
  FEMALE             0              46
  MALE               7              84
                 vv
clus               M0  M1 M1A M1B M1C
  RGS18 MUTATED     6   0   0   0   0
  RGS18 WILD-TYPE 113   1   1   2   1
D22V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  RGS18 MUTATED    4  0   1   0  0   0   1   0  0  0
  RGS18 WILD-TYPE 67  2   5  11  1   4   9   4 15  1
D22V6, multiclass
D22V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RGS18 MUTATED             0       0        1        1        1         0
  RGS18 WILD-TYPE           1      15        7       11       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  RGS18 MUTATED           1         0         0          0          2
  RGS18 WILD-TYPE         6         4         7          5         14
                 vv
clus              STAGE IIIC STAGE IV
  RGS18 MUTATED            0        0
  RGS18 WILD-TYPE         19        3
D22V8, multiclass

Clustering(23) Variable = POF1B MUTATION ANALYSIS
D23V1, survival
                 sevent
clus2              0  1
  POF1B MUTATED    5  4
  POF1B WILD-TYPE 27 40
  POF1B MUTATED POF1B WILD-TYPE 
              9              67 
  POF1B MUTATED POF1B WILD-TYPE 
              4              40 
$`POF1B MUTATED`
TCGA-D3-A3MV TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29S 
        5.39        12.20        36.07        11.15        38.63         9.99 
TCGA-ER-A19D TCGA-ER-A19F TCGA-FW-A3R5 
        3.52        11.11         1.02 

$`POF1B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       45.70        13.32        24.00         9.30         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
        7.00        17.56        14.83        11.57         6.31         1.12 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
        4.27         5.13        37.97         4.41         1.08         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       12.03         8.12         8.84         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
       23.90         9.67         8.94         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 
       42.84        78.44         6.58         8.81        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       31.33        84.72        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  POF1B MUTATED POF1B WILD-TYPE 
           1.02            1.08 
  POF1B MUTATED POF1B WILD-TYPE 
          38.63           98.76 
  POF1B MUTATED POF1B WILD-TYPE 
          11.11           13.68 
[1] "1.0 - 38.6 (11.1)" "1.1 - 98.8 (13.7)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED"   "POF1B MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"POF1B WILD-TYPE"   "POF1B MUTATED"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED"   "POF1B MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"POF1B WILD-TYPE"   "POF1B MUTATED"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED"   "POF1B MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"POF1B WILD-TYPE"   "POF1B MUTATED"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
[1] "hr=" "1"  
D23V2, continuous
D23V3, binary
                 cls
clus               0  1
  POF1B MUTATED    5 12
  POF1B WILD-TYPE 27 93
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POF1B MUTATED      5   12
  POF1B WILD-TYPE   27   93
                                                                                          clus
vv                                                                                         POF1B MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             5
  REGIONAL LYMPH NODE                                                                                 12
                                                                                          clus
vv                                                                                         POF1B WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              27
  REGIONAL LYMPH NODE                                                                                   93
D23V4, binary
                 cls
clus               0  1
  POF1B MUTATED    5 12
  POF1B WILD-TYPE 41 79
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POF1B MUTATED      5   12
  POF1B WILD-TYPE   41   79
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  FEMALE             5              41
  MALE              12              79
                 vv
clus               M0  M1 M1A M1B M1C
  POF1B MUTATED    16   0   0   0   0
  POF1B WILD-TYPE 103   1   1   2   1
D23V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  POF1B MUTATED   11  0   1   2  1   1   0   0  0  0
  POF1B WILD-TYPE 60  2   5   9  0   3  10   4 15  1
D23V6, multiclass
D23V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  POF1B MUTATED             0       2        2        1        3         1
  POF1B WILD-TYPE           1      13        6       11       13         5
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  POF1B MUTATED           1         0         1          0          3
  POF1B WILD-TYPE         6         4         6          5         13
                 vv
clus              STAGE IIIC STAGE IV
  POF1B MUTATED            1        0
  POF1B WILD-TYPE         18        3
D23V8, multiclass

Clustering(24) Variable = OR5AC2 MUTATION ANALYSIS
D24V1, survival
                  sevent
clus2               0  1
  OR5AC2 MUTATED    3  5
  OR5AC2 WILD-TYPE 29 39
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               8               68 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               5               39 
$`OR5AC2 MUTATED`
TCGA-D3-A3MV TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A29R TCGA-ER-A19F 
        5.39        14.83         1.12        12.20         8.84        11.11 
TCGA-ER-A19M TCGA-GN-A266 
       28.64        10.09 

$`OR5AC2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       45.70        13.32        24.00         9.30         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A185 TCGA-EE-A20B 
        7.00        17.56        11.57         6.31         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        5.13        37.97        11.15        38.63         4.41         1.08 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 
        9.47        12.03         8.12         9.99         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19J 
       25.28        23.90         9.67         8.94         3.52         4.18 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 
       12.99        42.84        78.44         6.58         8.81         1.02 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       15.35        24.85        31.33        84.72        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
            1.12             1.02 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
           28.64            98.76 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
            10.6             13.5 
[1] "1.1 - 28.6 (10.6)" "1.0 - 98.8 (13.5)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "OR5AC2 MUTATED"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "OR5AC2 MUTATED"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "OR5AC2 MUTATED"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
[1] "hr=" "1.8"
D24V2, continuous
D24V3, binary
                  cls
clus                0  1
  OR5AC2 MUTATED    3 13
  OR5AC2 WILD-TYPE 29 92
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5AC2 MUTATED      3   13
  OR5AC2 WILD-TYPE   29   92
                                                                                          clus
vv                                                                                         OR5AC2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              3
  REGIONAL LYMPH NODE                                                                                  13
                                                                                          clus
vv                                                                                         OR5AC2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               29
  REGIONAL LYMPH NODE                                                                                    92
D24V4, binary
                  cls
clus                0  1
  OR5AC2 MUTATED    5 11
  OR5AC2 WILD-TYPE 41 80
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5AC2 MUTATED      5   11
  OR5AC2 WILD-TYPE   41   80
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  FEMALE              5               41
  MALE               11               80
                  vv
clus                M0  M1 M1A M1B M1C
  OR5AC2 MUTATED    15   0   0   0   0
  OR5AC2 WILD-TYPE 104   1   1   2   1
D24V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OR5AC2 MUTATED   12  0   0   1  0   1   1   0  0  0
  OR5AC2 WILD-TYPE 59  2   6  10  1   3   9   4 15  1
D24V6, multiclass
D24V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR5AC2 MUTATED             0       2        0        1        5         1
  OR5AC2 WILD-TYPE           1      13        8       11       11         5
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR5AC2 MUTATED           2         0         0          0          2
  OR5AC2 WILD-TYPE         5         4         7          5         14
                  vv
clus               STAGE IIIC STAGE IV
  OR5AC2 MUTATED            1        0
  OR5AC2 WILD-TYPE         18        3
D24V8, multiclass

Clustering(25) Variable = VEGFC MUTATION ANALYSIS
D25V1, survival
                 sevent
clus2              0  1
  VEGFC MUTATED    5  2
  VEGFC WILD-TYPE 27 42
  VEGFC MUTATED VEGFC WILD-TYPE 
              7              69 
  VEGFC MUTATED VEGFC WILD-TYPE 
              2              42 
$`VEGFC MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A2JK TCGA-D3-A3MV TCGA-DA-A1HW TCGA-EE-A20F TCGA-EE-A2A6 
       98.76         6.35         5.39        35.80         5.13         8.94 
TCGA-FW-A3R5 
        1.02 

$`VEGFC WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        70.16        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
        8.38        21.14        11.41        15.25        45.70        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HY 
       24.00         9.30         4.01         2.86        48.79        51.12 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 
       10.03        39.19        13.68         9.99        36.69        25.15 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       11.57         6.31         1.12        12.20         4.27        36.07 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
       37.97        11.15        38.63         4.41         1.08         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 
       12.03         8.12         8.84         9.99         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       25.28        23.90         9.67         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       15.35        24.85        31.33        84.72        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  VEGFC MUTATED VEGFC WILD-TYPE 
           1.02            1.08 
  VEGFC MUTATED VEGFC WILD-TYPE 
          98.76           84.72 
  VEGFC MUTATED VEGFC WILD-TYPE 
           6.35           13.32 
[1] "1.0 - 98.8 (6.3)"  "1.1 - 84.7 (13.3)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
[1] "hr=" "1.6"
D25V2, continuous
D25V3, binary
                 cls
clus               0  1
  VEGFC MUTATED    1 12
  VEGFC WILD-TYPE 31 93
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VEGFC MUTATED      1   12
  VEGFC WILD-TYPE   31   93
                                                                                          clus
vv                                                                                         VEGFC MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                 12
                                                                                          clus
vv                                                                                         VEGFC WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   93
D25V4, binary
                 cls
clus               0  1
  VEGFC MUTATED    4  9
  VEGFC WILD-TYPE 42 82
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VEGFC MUTATED      4    9
  VEGFC WILD-TYPE   42   82
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  FEMALE             4              42
  MALE               9              82
                 vv
clus               M0  M1 M1A M1B M1C
  VEGFC MUTATED    12   0   0   0   0
  VEGFC WILD-TYPE 107   1   1   2   1
D25V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  VEGFC MUTATED    7  0   0   1  1   2   1   0  0  0
  VEGFC WILD-TYPE 64  2   6  10  0   2   9   4 15  1
D25V6, multiclass
D25V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  VEGFC MUTATED             0       0        3        1        2         0
  VEGFC WILD-TYPE           1      15        5       11       14         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  VEGFC MUTATED           1         0         1          0          2
  VEGFC WILD-TYPE         6         4         6          5         14
                 vv
clus              STAGE IIIC STAGE IV
  VEGFC MUTATED            1        0
  VEGFC WILD-TYPE         18        3
D25V8, multiclass

Clustering(26) Variable = RERG MUTATION ANALYSIS
D26V1, survival
                sevent
clus2             0  1
  RERG MUTATED    2  2
  RERG WILD-TYPE 30 42
  RERG MUTATED RERG WILD-TYPE 
             4             72 
  RERG MUTATED RERG WILD-TYPE 
             2             42 
$`RERG MUTATED`
TCGA-DA-A1HV TCGA-EE-A181 TCGA-FW-A3R5 TCGA-GN-A266 
       48.79         1.12         1.02        10.09 

$`RERG WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 
        7.00        17.56        14.83        11.57         6.31        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        4.27        36.07         5.13        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41         1.08         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        9.99         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 
       42.84        78.44         6.58         8.81        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        16.21        15.39        12.16        14.70 

  RERG MUTATED RERG WILD-TYPE 
          1.02           1.08 
  RERG MUTATED RERG WILD-TYPE 
         48.79          98.76 
  RERG MUTATED RERG WILD-TYPE 
         5.605         13.155 
[1] "1.0 - 48.8 (5.6)"  "1.1 - 98.8 (13.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "RERG MUTATED" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" "RERG WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "RERG MUTATED" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" "RERG WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "RERG MUTATED" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" "RERG WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE"   "RERG MUTATED" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" "RERG WILD-TYPE" 
[1] "hr=" "1.3"
D26V2, continuous
D26V3, binary
                cls
clus              0  1
  RERG MUTATED    1  8
  RERG WILD-TYPE 31 97
[1] "tbl2"
                cls
clus             [,1] [,2]
  RERG MUTATED      1    8
  RERG WILD-TYPE   31   97
                                                                                          clus
vv                                                                                         RERG MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                 8
                                                                                          clus
vv                                                                                         RERG WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  97
D26V4, binary
                cls
clus              0  1
  RERG MUTATED    2  7
  RERG WILD-TYPE 44 84
[1] "tbl2"
                cls
clus             [,1] [,2]
  RERG MUTATED      2    7
  RERG WILD-TYPE   44   84
        clus
vv       RERG MUTATED RERG WILD-TYPE
  FEMALE            2             44
  MALE              7             84
                vv
clus              M0  M1 M1A M1B M1C
  RERG MUTATED     7   0   0   0   0
  RERG WILD-TYPE 112   1   1   2   1
D26V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  RERG MUTATED    4  0   0   0  1   1   1   0  0  0
  RERG WILD-TYPE 67  2   6  11  0   3   9   4 15  1
D26V6, multiclass
D26V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RERG MUTATED             0       1        0        0        3         0
  RERG WILD-TYPE           1      14        8       12       13         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  RERG MUTATED           0         0         1          0          1          0
  RERG WILD-TYPE         7         4         6          5         15         19
                vv
clus             STAGE IV
  RERG MUTATED          0
  RERG WILD-TYPE        3
D26V8, multiclass

Clustering(27) Variable = CCNE2 MUTATION ANALYSIS
D27V1, survival
                 sevent
clus2              0  1
  CCNE2 MUTATED    0  7
  CCNE2 WILD-TYPE 32 37
  CCNE2 MUTATED CCNE2 WILD-TYPE 
              7              69 
  CCNE2 MUTATED CCNE2 WILD-TYPE 
              7              37 
$`CCNE2 MUTATED`
TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3CE TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
       10.26        11.41        13.32         6.31         1.12        12.20 
TCGA-EE-A29L 
        1.08 

$`CCNE2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CF 
        8.38        21.14         6.35        15.25        45.70        24.00 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        9.30         5.39         4.01         2.86        48.79        35.80 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 
       51.12        10.03        39.19        13.68         9.99        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       25.15        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
       14.83        11.57         4.27        36.07         5.13        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       11.15        38.63         4.41         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 
       28.64        42.84        78.44         6.58         8.81         1.02 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       15.35        24.85        31.33        84.72        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  CCNE2 MUTATED CCNE2 WILD-TYPE 
           1.08            1.02 
  CCNE2 MUTATED CCNE2 WILD-TYPE 
          13.32           98.76 
  CCNE2 MUTATED CCNE2 WILD-TYPE 
          10.26           14.70 
[1] "1.1 - 13.3 (10.3)" "1.0 - 98.8 (14.7)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CCNE2 WILD-TYPE"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"CCNE2 WILD-TYPE"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE"   "CCNE2 MUTATED" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "CCNE2 MUTATED"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CCNE2 WILD-TYPE"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CCNE2 WILD-TYPE"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"CCNE2 WILD-TYPE"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE"   "CCNE2 MUTATED" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "CCNE2 MUTATED"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CCNE2 WILD-TYPE"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CCNE2 WILD-TYPE"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"CCNE2 WILD-TYPE"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE"   "CCNE2 MUTATED" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "CCNE2 MUTATED"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CCNE2 WILD-TYPE"   "CCNE2 MUTATED" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" "CCNE2 WILD-TYPE" 
[1] "hr=" "4.7"
D27V2, continuous
D27V3, binary
                 cls
clus               0  1
  CCNE2 MUTATED    0 10
  CCNE2 WILD-TYPE 32 95
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CCNE2 MUTATED      0   10
  CCNE2 WILD-TYPE   32   95
                                                                                          clus
vv                                                                                         CCNE2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                 10
                                                                                          clus
vv                                                                                         CCNE2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                   95
D27V4, binary
                 cls
clus               0  1
  CCNE2 MUTATED    4  6
  CCNE2 WILD-TYPE 42 85
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CCNE2 MUTATED      4    6
  CCNE2 WILD-TYPE   42   85
        clus
vv       CCNE2 MUTATED CCNE2 WILD-TYPE
  FEMALE             4              42
  MALE               6              85
                 vv
clus               M0  M1 M1A M1B M1C
  CCNE2 MUTATED    10   0   0   0   0
  CCNE2 WILD-TYPE 109   1   1   2   1
D27V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CCNE2 MUTATED    7  0   0   2  0   0   0   0  1  0
  CCNE2 WILD-TYPE 64  2   6   9  1   4  10   4 14  1
D27V6, multiclass
D27V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CCNE2 MUTATED             0       1        0        0        3         1
  CCNE2 WILD-TYPE           1      14        8       12       13         5
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CCNE2 MUTATED           2         0         1          0          0
  CCNE2 WILD-TYPE         5         4         6          5         16
                 vv
clus              STAGE IIIC STAGE IV
  CCNE2 MUTATED            2        0
  CCNE2 WILD-TYPE         17        3
D27V8, multiclass

Clustering(28) Variable = GPR141 MUTATION ANALYSIS
D28V1, survival
                  sevent
clus2               0  1
  GPR141 MUTATED    2  4
  GPR141 WILD-TYPE 30 40
  GPR141 MUTATED GPR141 WILD-TYPE 
               6               70 
  GPR141 MUTATED GPR141 WILD-TYPE 
               4               40 
$`GPR141 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A2J8 TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A2A0 TCGA-FW-A3R5 
       70.16         8.38        12.20         5.13        11.31         1.02 

$`GPR141 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        98.76        28.08        22.55        10.26 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
       21.14        11.41         6.35        15.25        45.70        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       24.00         9.30         5.39         4.01         2.86        48.79 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       35.80        51.12        10.03        39.19        13.68         9.99 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A185 
       17.56        14.83        11.57         6.31         1.12         4.27 
TCGA-EE-A20B TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       36.07        37.97        11.15        38.63         4.41         1.08 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X 
        9.47        12.03         8.12         8.84         9.99         8.09 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        8.81        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  GPR141 MUTATED GPR141 WILD-TYPE 
            1.02             1.08 
  GPR141 MUTATED GPR141 WILD-TYPE 
           70.16            98.76 
  GPR141 MUTATED GPR141 WILD-TYPE 
           9.845           13.500 
[1] "1.0 - 70.2 (9.8)"  "1.1 - 98.8 (13.5)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
  "GPR141 MUTATED" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
  "GPR141 MUTATED" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
  "GPR141 MUTATED" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
  "GPR141 MUTATED" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
  "GPR141 MUTATED" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
  "GPR141 MUTATED" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
[1] "hr=" "1.6"
D28V2, continuous
D28V3, binary
                  cls
clus                0  1
  GPR141 MUTATED    4  8
  GPR141 WILD-TYPE 28 97
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR141 MUTATED      4    8
  GPR141 WILD-TYPE   28   97
                                                                                          clus
vv                                                                                         GPR141 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              4
  REGIONAL LYMPH NODE                                                                                   8
                                                                                          clus
vv                                                                                         GPR141 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               28
  REGIONAL LYMPH NODE                                                                                    97
D28V4, binary
                  cls
clus                0  1
  GPR141 MUTATED    3  9
  GPR141 WILD-TYPE 43 82
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR141 MUTATED      3    9
  GPR141 WILD-TYPE   43   82
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  FEMALE              3               43
  MALE                9               82
                  vv
clus                M0  M1 M1A M1B M1C
  GPR141 MUTATED    12   0   0   0   0
  GPR141 WILD-TYPE 107   1   1   2   1
D28V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  GPR141 MUTATED   10  0   0   1  1   0   0   0  0  0
  GPR141 WILD-TYPE 61  2   6  10  0   4  10   4 15  1
D28V6, multiclass
D28V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GPR141 MUTATED             0       3        1        2        3         1
  GPR141 WILD-TYPE           1      12        7       10       13         5
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  GPR141 MUTATED           0         0         2          0          0
  GPR141 WILD-TYPE         7         4         5          5         16
                  vv
clus               STAGE IIIC STAGE IV
  GPR141 MUTATED            0        0
  GPR141 WILD-TYPE         19        3
D28V8, multiclass

Clustering(29) Variable = GK2 MUTATION ANALYSIS
D29V1, survival
               sevent
clus2            0  1
  GK2 MUTATED    3  4
  GK2 WILD-TYPE 29 40
  GK2 MUTATED GK2 WILD-TYPE 
            7            69 
  GK2 MUTATED GK2 WILD-TYPE 
            4            40 
$`GK2 MUTATED`
TCGA-D3-A3C6 TCGA-DA-A3F8 TCGA-EE-A20F TCGA-FW-A3R5 TCGA-GN-A266 TCGA-GN-A268 
       15.25        14.83         5.13         1.02        10.09        15.39 
TCGA-GN-A26A 
       12.16 

$`GK2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3CC 
       10.26         8.38        21.14        11.41         6.35        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
        7.00        17.56        11.57         6.31         1.12        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        4.27        36.07        37.97        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        1.08         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       78.44         6.58         8.81        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26D 
       84.72        16.21        14.70 

  GK2 MUTATED GK2 WILD-TYPE 
         1.02          1.08 
  GK2 MUTATED GK2 WILD-TYPE 
        15.39         98.76 
  GK2 MUTATED GK2 WILD-TYPE 
        12.16         12.99 
[1] "1.0 - 15.4 (12.2)" "1.1 - 98.8 (13.0)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
  "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED"   "GK2 MUTATED" 
   TCGA-GN-A26D 
"GK2 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
  "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED"   "GK2 MUTATED" 
   TCGA-GN-A26D 
"GK2 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
  "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED"   "GK2 MUTATED" 
   TCGA-GN-A26D 
"GK2 WILD-TYPE" 
[1] "hr=" "1.6"
D29V2, continuous
D29V3, binary
               cls
clus             0  1
  GK2 MUTATED    6 11
  GK2 WILD-TYPE 26 94
[1] "tbl2"
               cls
clus            [,1] [,2]
  GK2 MUTATED      6   11
  GK2 WILD-TYPE   26   94
                                                                                          clus
vv                                                                                         GK2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           6
  REGIONAL LYMPH NODE                                                                               11
                                                                                          clus
vv                                                                                         GK2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            26
  REGIONAL LYMPH NODE                                                                                 94
D29V4, binary
               cls
clus             0  1
  GK2 MUTATED    5 12
  GK2 WILD-TYPE 41 79
[1] "tbl2"
               cls
clus            [,1] [,2]
  GK2 MUTATED      5   12
  GK2 WILD-TYPE   41   79
        clus
vv       GK2 MUTATED GK2 WILD-TYPE
  FEMALE           5            41
  MALE            12            79
               vv
clus             M0  M1 M1A M1B M1C
  GK2 MUTATED    15   0   0   0   0
  GK2 WILD-TYPE 104   1   1   2   1
D29V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  GK2 MUTATED   12  0   1   0  1   0   1   0  0  0
  GK2 WILD-TYPE 59  2   5  11  0   4   9   4 15  1
D29V6, multiclass
D29V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GK2 MUTATED             0       1        2        1        4         1
  GK2 WILD-TYPE           1      14        6       11       12         5
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  GK2 MUTATED           3         0         1          1          1          0
  GK2 WILD-TYPE         4         4         6          4         15         19
               vv
clus            STAGE IV
  GK2 MUTATED          0
  GK2 WILD-TYPE        3
D29V8, multiclass

Clustering(30) Variable = NAP1L2 MUTATION ANALYSIS
D30V1, survival
                  sevent
clus2               0  1
  NAP1L2 MUTATED    3  3
  NAP1L2 WILD-TYPE 29 41
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               6               70 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               3               41 
$`NAP1L2 MUTATED`
TCGA-D3-A2JD TCGA-D3-A3C6 TCGA-DA-A1HV TCGA-EE-A20F TCGA-EE-A29D TCGA-FW-A3R5 
       11.41        15.25        48.79         5.13        11.15         1.02 

$`NAP1L2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JK TCGA-D3-A3CC TCGA-D3-A3CE 
       10.26         8.38        21.14         6.35        45.70        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW 
       24.00         9.30         5.39         4.01         2.86        35.80 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 
       51.12        10.03        39.19        13.68         9.99        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       25.15        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 
       14.83        11.57         6.31         1.12        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
       36.07        37.97        38.63         4.41         1.08         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 
       12.03         8.12         8.84         9.99         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        8.81        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
            1.02             1.08 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
           48.79            98.76 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
          11.280           13.155 
[1] "1.0 - 48.8 (11.3)" "1.1 - 98.8 (13.2)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
[1] "hr=" "1.1"
D30V2, continuous
D30V3, binary
                  cls
clus                0  1
  NAP1L2 MUTATED    2 10
  NAP1L2 WILD-TYPE 30 95
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L2 MUTATED      2   10
  NAP1L2 WILD-TYPE   30   95
                                                                                          clus
vv                                                                                         NAP1L2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              2
  REGIONAL LYMPH NODE                                                                                  10
                                                                                          clus
vv                                                                                         NAP1L2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               30
  REGIONAL LYMPH NODE                                                                                    95
D30V4, binary
                  cls
clus                0  1
  NAP1L2 MUTATED    3  9
  NAP1L2 WILD-TYPE 43 82
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L2 MUTATED      3    9
  NAP1L2 WILD-TYPE   43   82
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  FEMALE              3               43
  MALE                9               82
                  vv
clus                M0  M1 M1A M1B M1C
  NAP1L2 MUTATED    12   0   0   0   0
  NAP1L2 WILD-TYPE 107   1   1   2   1
D30V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  NAP1L2 MUTATED    7  0   0   3  1   0   1   0  0  0
  NAP1L2 WILD-TYPE 64  2   6   8  0   4   9   4 15  1
D30V6, multiclass
D30V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  NAP1L2 MUTATED             0       1        0        2        4         0
  NAP1L2 WILD-TYPE           1      14        8       10       12         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  NAP1L2 MUTATED           0         0         1          0          2
  NAP1L2 WILD-TYPE         7         4         6          5         14
                  vv
clus               STAGE IIIC STAGE IV
  NAP1L2 MUTATED            2        0
  NAP1L2 WILD-TYPE         17        3
D30V8, multiclass

Clustering(31) Variable = SNAP91 MUTATION ANALYSIS
D31V1, survival
                  sevent
clus2               0  1
  SNAP91 MUTATED    5  5
  SNAP91 WILD-TYPE 27 39
  SNAP91 MUTATED SNAP91 WILD-TYPE 
              10               66 
  SNAP91 MUTATED SNAP91 WILD-TYPE 
               5               39 
$`SNAP91 MUTATED`
TCGA-D3-A1Q8 TCGA-DA-A1I8 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A29E TCGA-EE-A29P 
       28.08        25.15        14.83        11.57        38.63        12.03 
TCGA-EE-A29S TCGA-FW-A3R5 TCGA-GN-A266 TCGA-GN-A268 
        9.99         1.02        10.09        15.39 

$`SNAP91 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        70.16        98.76        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
        8.38        21.14        11.41         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
        9.99        36.69        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       17.56         6.31         1.12        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
        5.13        37.97        11.15         4.41         1.08         9.47 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.12         8.84         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 
       28.64        42.84        78.44         6.58         8.81        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       24.85        31.33        84.72        16.21        12.16        14.70 

  SNAP91 MUTATED SNAP91 WILD-TYPE 
            1.02             1.08 
  SNAP91 MUTATED SNAP91 WILD-TYPE 
           38.63            98.76 
  SNAP91 MUTATED SNAP91 WILD-TYPE 
          13.430           12.595 
[1] "1.0 - 38.6 (13.4)" "1.1 - 98.8 (12.6)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
  "SNAP91 MUTATED" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"SNAP91 WILD-TYPE"   "SNAP91 MUTATED"   "SNAP91 MUTATED" "SNAP91 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" "SNAP91 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" "SNAP91 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"SNAP91 WILD-TYPE"   "SNAP91 MUTATED" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
  "SNAP91 MUTATED" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"SNAP91 WILD-TYPE"   "SNAP91 MUTATED"   "SNAP91 MUTATED" "SNAP91 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" "SNAP91 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" "SNAP91 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"SNAP91 WILD-TYPE"   "SNAP91 MUTATED" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
  "SNAP91 MUTATED" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"SNAP91 WILD-TYPE"   "SNAP91 MUTATED"   "SNAP91 MUTATED" "SNAP91 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" "SNAP91 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" "SNAP91 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE"   "SNAP91 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"SNAP91 WILD-TYPE"   "SNAP91 MUTATED" "SNAP91 WILD-TYPE" "SNAP91 WILD-TYPE" 
[1] "hr=" "1.2"
D31V2, continuous
D31V3, binary
                  cls
clus                0  1
  SNAP91 MUTATED    3 15
  SNAP91 WILD-TYPE 29 90
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SNAP91 MUTATED      3   15
  SNAP91 WILD-TYPE   29   90
                                                                                          clus
vv                                                                                         SNAP91 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              3
  REGIONAL LYMPH NODE                                                                                  15
                                                                                          clus
vv                                                                                         SNAP91 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               29
  REGIONAL LYMPH NODE                                                                                    90
D31V4, binary
                  cls
clus                0  1
  SNAP91 MUTATED    3 15
  SNAP91 WILD-TYPE 43 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SNAP91 MUTATED      3   15
  SNAP91 WILD-TYPE   43   76
        clus
vv       SNAP91 MUTATED SNAP91 WILD-TYPE
  FEMALE              3               43
  MALE               15               76
                  vv
clus                M0  M1 M1A M1B M1C
  SNAP91 MUTATED    16   0   0   1   0
  SNAP91 WILD-TYPE 103   1   1   1   1
D31V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  SNAP91 MUTATED   11  0   1   1  1   0   1   0  2  0
  SNAP91 WILD-TYPE 60  2   5  10  0   4   9   4 13  1
D31V6, multiclass
D31V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SNAP91 MUTATED             0       1        2        1        2         1
  SNAP91 WILD-TYPE           1      14        6       11       14         5
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SNAP91 MUTATED           3         1         1          0          3
  SNAP91 WILD-TYPE         4         3         6          5         13
                  vv
clus               STAGE IIIC STAGE IV
  SNAP91 MUTATED            1        1
  SNAP91 WILD-TYPE         18        2
D31V8, multiclass

Clustering(32) Variable = PRB2 MUTATION ANALYSIS
D32V1, survival
                sevent
clus2             0  1
  PRB2 MUTATED    4  5
  PRB2 WILD-TYPE 28 39
  PRB2 MUTATED PRB2 WILD-TYPE 
             9             67 
  PRB2 MUTATED PRB2 WILD-TYPE 
             5             39 
$`PRB2 MUTATED`
TCGA-D9-A3Z1 TCGA-DA-A3F3 TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29N 
        4.01         7.00         1.12        11.15        38.63         9.47 
TCGA-EE-A29S TCGA-EE-A2A0 TCGA-FW-A3R5 
        9.99        11.31         1.02 

$`PRB2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z3 
       45.70        13.32        24.00         9.30         5.39         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 
       17.56        14.83        11.57         6.31        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29P 
       36.07         5.13        37.97         4.41         1.08        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        8.12         8.84         8.09        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 
       42.84        78.44         6.58         8.81        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       31.33        84.72        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  PRB2 MUTATED PRB2 WILD-TYPE 
          1.02           1.08 
  PRB2 MUTATED PRB2 WILD-TYPE 
         38.63          98.76 
  PRB2 MUTATED PRB2 WILD-TYPE 
          9.47          14.70 
[1] "1.0 - 38.6 (9.5)"  "1.1 - 98.8 (14.7)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
[1] "hr=" "2"  
D32V2, continuous
D32V3, binary
                cls
clus              0  1
  PRB2 MUTATED    1 19
  PRB2 WILD-TYPE 31 86
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB2 MUTATED      1   19
  PRB2 WILD-TYPE   31   86
                                                                                          clus
vv                                                                                         PRB2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                19
                                                                                          clus
vv                                                                                         PRB2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  86
D32V4, binary
                cls
clus              0  1
  PRB2 MUTATED    3 17
  PRB2 WILD-TYPE 43 74
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB2 MUTATED      3   17
  PRB2 WILD-TYPE   43   74
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  FEMALE            3             43
  MALE             17             74
                vv
clus              M0  M1 M1A M1B M1C
  PRB2 MUTATED    18   0   0   0   0
  PRB2 WILD-TYPE 101   1   1   2   1
D32V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PRB2 MUTATED   12  0   0   2  1   1   1   0  1  0
  PRB2 WILD-TYPE 59  2   6   9  0   3   9   4 14  1
D32V6, multiclass
D32V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PRB2 MUTATED             0       1        3        0        4         2
  PRB2 WILD-TYPE           1      14        5       12       12         4
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  PRB2 MUTATED           1         0         1          0          2          2
  PRB2 WILD-TYPE         6         4         6          5         14         17
                vv
clus             STAGE IV
  PRB2 MUTATED          0
  PRB2 WILD-TYPE        3
D32V8, multiclass

Clustering(33) Variable = TLL1 MUTATION ANALYSIS
D33V1, survival
                sevent
clus2             0  1
  TLL1 MUTATED    7  4
  TLL1 WILD-TYPE 25 40
  TLL1 MUTATED TLL1 WILD-TYPE 
            11             65 
  TLL1 MUTATED TLL1 WILD-TYPE 
             4             40 
$`TLL1 MUTATED`
TCGA-D9-A3Z1 TCGA-DA-A3F8 TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29R 
        4.01        14.83        11.15        38.63         4.41         8.84 
TCGA-EE-A2A6 TCGA-ER-A19F TCGA-FW-A3R5 TCGA-GN-A266 TCGA-GN-A268 
        8.94        11.11         1.02        10.09        15.39 

$`TLL1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z3 
       45.70        13.32        24.00         9.30         5.39         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
        7.00        17.56        11.57         6.31         1.12        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29L TCGA-EE-A29N 
        4.27        36.07         5.13        37.97         1.08         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       12.03         8.12         9.99         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
       23.90         9.67         3.52         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 
       42.84        78.44         6.58         8.81        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        16.21        12.16        14.70 

  TLL1 MUTATED TLL1 WILD-TYPE 
          1.02           1.08 
  TLL1 MUTATED TLL1 WILD-TYPE 
         38.63          98.76 
  TLL1 MUTATED TLL1 WILD-TYPE 
         10.09          13.68 
[1] "1.0 - 38.6 (10.1)" "1.1 - 98.8 (13.7)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED"   "TLL1 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED"   "TLL1 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED"   "TLL1 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
[1] "hr=" "1"  
D33V2, continuous
D33V3, binary
                cls
clus              0  1
  TLL1 MUTATED    3 24
  TLL1 WILD-TYPE 29 81
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLL1 MUTATED      3   24
  TLL1 WILD-TYPE   29   81
                                                                                          clus
vv                                                                                         TLL1 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            3
  REGIONAL LYMPH NODE                                                                                24
                                                                                          clus
vv                                                                                         TLL1 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             29
  REGIONAL LYMPH NODE                                                                                  81
D33V4, binary
                cls
clus              0  1
  TLL1 MUTATED    6 21
  TLL1 WILD-TYPE 40 70
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLL1 MUTATED      6   21
  TLL1 WILD-TYPE   40   70
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  FEMALE            6             40
  MALE             21             70
                vv
clus             M0 M1 M1A M1B M1C
  TLL1 MUTATED   26  0   0   0   0
  TLL1 WILD-TYPE 93  1   1   2   1
D33V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TLL1 MUTATED   17  0   1   4  1   0   1   0  1  1
  TLL1 WILD-TYPE 54  2   5   7  0   4   9   4 14  0
D33V6, multiclass
D33V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TLL1 MUTATED             0       4        5        0        5         0
  TLL1 WILD-TYPE           1      11        3       12       11         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  TLL1 MUTATED           2         0         1          1          3          3
  TLL1 WILD-TYPE         5         4         6          4         13         16
                vv
clus             STAGE IV
  TLL1 MUTATED          0
  TLL1 WILD-TYPE        3
D33V8, multiclass

Clustering(34) Variable = HBD MUTATION ANALYSIS
D34V1, survival
               sevent
clus2            0  1
  HBD MUTATED    2  4
  HBD WILD-TYPE 30 40
  HBD MUTATED HBD WILD-TYPE 
            6            70 
  HBD MUTATED HBD WILD-TYPE 
            4            40 
$`HBD MUTATED`
TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A2A6 TCGA-ER-A19M 
        1.12         4.27        37.97        11.15         8.94        28.64 

$`HBD WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       12.20        36.07         5.13        38.63         4.41         1.08 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X 
        9.47        12.03         8.12         8.84         9.99         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-ER-A19D TCGA-ER-A19F 
       11.31        25.28        23.90         9.67         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
        4.18        12.99        42.84        78.44         6.58         8.81 
TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        1.02        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  HBD MUTATED HBD WILD-TYPE 
         1.12          1.02 
  HBD MUTATED HBD WILD-TYPE 
        37.97         98.76 
  HBD MUTATED HBD WILD-TYPE 
       10.045        13.155 
[1] "1.1 - 38.0 (10.0)" "1.0 - 98.8 (13.2)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
"HBD WILD-TYPE"   "HBD MUTATED"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
"HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A26D 
"HBD WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
"HBD WILD-TYPE"   "HBD MUTATED"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
"HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A26D 
"HBD WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
"HBD WILD-TYPE"   "HBD MUTATED"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
"HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A26D 
"HBD WILD-TYPE" 
[1] "hr=" "1.4"
D34V2, continuous
D34V3, binary
               cls
clus             0  1
  HBD MUTATED    0  8
  HBD WILD-TYPE 32 97
[1] "tbl2"
               cls
clus            [,1] [,2]
  HBD MUTATED      0    8
  HBD WILD-TYPE   32   97
                                                                                          clus
vv                                                                                         HBD MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           0
  REGIONAL LYMPH NODE                                                                                8
                                                                                          clus
vv                                                                                         HBD WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            32
  REGIONAL LYMPH NODE                                                                                 97
D34V4, binary
               cls
clus             0  1
  HBD MUTATED    3  5
  HBD WILD-TYPE 43 86
[1] "tbl2"
               cls
clus            [,1] [,2]
  HBD MUTATED      3    5
  HBD WILD-TYPE   43   86
        clus
vv       HBD MUTATED HBD WILD-TYPE
  FEMALE           3            43
  MALE             5            86
               vv
clus             M0  M1 M1A M1B M1C
  HBD MUTATED     8   0   0   0   0
  HBD WILD-TYPE 111   1   1   2   1
D34V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  HBD MUTATED    6  0   0   1  0   0   0   0  1  0
  HBD WILD-TYPE 65  2   6  10  1   4  10   4 14  1
D34V6, multiclass
D34V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  HBD MUTATED             0       0        2        2        2         0
  HBD WILD-TYPE           1      15        6       10       14         6
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  HBD MUTATED           0         0         0          0          0          2
  HBD WILD-TYPE         7         4         7          5         16         17
               vv
clus            STAGE IV
  HBD MUTATED          0
  HBD WILD-TYPE        3
D34V8, multiclass

Clustering(35) Variable = GRXCR2 MUTATION ANALYSIS
D35V1, survival
                  sevent
clus2               0  1
  GRXCR2 MUTATED    5  3
  GRXCR2 WILD-TYPE 27 41
  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
               8               68 
  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
               3               41 
$`GRXCR2 MUTATED`
TCGA-DA-A1I1 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E 
       39.19        17.56        14.83         1.12        11.15        38.63 
TCGA-FW-A3R5 TCGA-GN-A266 
        1.02        10.09 

$`GRXCR2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 
        2.86        48.79        35.80        51.12        10.03        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        7.00        11.57         6.31        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
        5.13        37.97         4.41         1.08         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.12         8.84         9.99         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       15.35        24.85        31.33        84.72        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
            1.02             1.08 
  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
           39.19            98.76 
  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
          12.990           12.595 
[1] "1.0 - 39.2 (13.0)" "1.1 - 98.8 (12.6)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
  "GRXCR2 MUTATED"   "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED"   "GRXCR2 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
  "GRXCR2 MUTATED"   "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED"   "GRXCR2 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
  "GRXCR2 MUTATED"   "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED"   "GRXCR2 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" "GRXCR2 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE"   "GRXCR2 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" "GRXCR2 WILD-TYPE" 
[1] "hr=" "1.5"
D35V2, continuous
D35V3, binary
                  cls
clus                0  1
  GRXCR2 MUTATED    2  9
  GRXCR2 WILD-TYPE 30 96
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRXCR2 MUTATED      2    9
  GRXCR2 WILD-TYPE   30   96
                                                                                          clus
vv                                                                                         GRXCR2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              2
  REGIONAL LYMPH NODE                                                                                   9
                                                                                          clus
vv                                                                                         GRXCR2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               30
  REGIONAL LYMPH NODE                                                                                    96
D35V4, binary
                  cls
clus                0  1
  GRXCR2 MUTATED    3  8
  GRXCR2 WILD-TYPE 43 83
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRXCR2 MUTATED      3    8
  GRXCR2 WILD-TYPE   43   83
        clus
vv       GRXCR2 MUTATED GRXCR2 WILD-TYPE
  FEMALE              3               43
  MALE                8               83
                  vv
clus                M0  M1 M1A M1B M1C
  GRXCR2 MUTATED     9   0   0   0   0
  GRXCR2 WILD-TYPE 110   1   1   2   1
D35V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  GRXCR2 MUTATED    3  0   0   2  1   0   1   0  2  0
  GRXCR2 WILD-TYPE 68  2   6   9  0   4   9   4 13  1
D35V6, multiclass
D35V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GRXCR2 MUTATED             0       0        2        0        1         0
  GRXCR2 WILD-TYPE           1      15        6       12       15         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  GRXCR2 MUTATED           0         0         1          0          2
  GRXCR2 WILD-TYPE         7         4         6          5         14
                  vv
clus               STAGE IIIC STAGE IV
  GRXCR2 MUTATED            3        0
  GRXCR2 WILD-TYPE         16        3
D35V8, multiclass

Clustering(36) Variable = NOTCH2NL MUTATION ANALYSIS
D36V1, survival
                    sevent
clus2                 0  1
  NOTCH2NL MUTATED    1  2
  NOTCH2NL WILD-TYPE 31 42
  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
                 3                 73 
  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
                 2                 42 
$`NOTCH2NL MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A2J6 TCGA-EE-A29Q 
       70.16        10.26         8.12 

$`NOTCH2NL WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 
       16.47        32.55        98.76        28.08        22.55         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
       21.14        11.41         6.35        15.25        45.70        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       24.00         9.30         5.39         4.01         2.86        48.79 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       35.80        51.12        10.03        39.19        13.68         9.99 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
       17.56        14.83        11.57         6.31         1.12        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        4.27        36.07         5.13        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S 
        4.41         1.08         9.47        12.03         8.84         9.99 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 
       78.44         6.58         8.81         1.02        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       31.33        84.72        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
              8.12               1.02 
  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
             70.16              98.76 
  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
             10.26              12.99 
[1] "8.1 - 70.2 (10.3)" "1.0 - 98.8 (13.0)"
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE"   "NOTCH2NL MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
  "NOTCH2NL MUTATED" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
  "NOTCH2NL MUTATED" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-GN-A26D 
"NOTCH2NL WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE"   "NOTCH2NL MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
  "NOTCH2NL MUTATED" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
  "NOTCH2NL MUTATED" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-GN-A26D 
"NOTCH2NL WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE"   "NOTCH2NL MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
  "NOTCH2NL MUTATED" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
  "NOTCH2NL MUTATED" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-GN-A26D 
"NOTCH2NL WILD-TYPE" 
[1] "hr=" "1"  
D36V2, continuous
D36V3, binary
                    cls
clus                   0   1
  NOTCH2NL MUTATED     4   5
  NOTCH2NL WILD-TYPE  28 100
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  NOTCH2NL MUTATED      4    5
  NOTCH2NL WILD-TYPE   28  100
                                                                                          clus
vv                                                                                         NOTCH2NL MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                4
  REGIONAL LYMPH NODE                                                                                     5
                                                                                          clus
vv                                                                                         NOTCH2NL WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 28
  REGIONAL LYMPH NODE                                                                                     100
D36V4, binary
                    cls
clus                  0  1
  NOTCH2NL MUTATED    2  7
  NOTCH2NL WILD-TYPE 44 84
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  NOTCH2NL MUTATED      2    7
  NOTCH2NL WILD-TYPE   44   84
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  FEMALE                2                 44
  MALE                  7                 84
                    vv
clus                  M0  M1 M1A M1B M1C
  NOTCH2NL MUTATED     8   0   0   0   0
  NOTCH2NL WILD-TYPE 111   1   1   2   1
D36V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  NOTCH2NL MUTATED    5  0   2   1  0   0   0   0  0  0
  NOTCH2NL WILD-TYPE 66  2   4  10  1   4  10   4 15  1
D36V6, multiclass
D36V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  NOTCH2NL MUTATED             0       1        0        0        2         0
  NOTCH2NL WILD-TYPE           1      14        8       12       14         6
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  NOTCH2NL MUTATED           2         0         1          1          1
  NOTCH2NL WILD-TYPE         5         4         6          4         15
                    vv
clus                 STAGE IIIC STAGE IV
  NOTCH2NL MUTATED            0        0
  NOTCH2NL WILD-TYPE         19        3
D36V8, multiclass

Clustering(37) Variable = OXA1L MUTATION ANALYSIS
D37V1, survival
                 sevent
clus2              0  1
  OXA1L MUTATED    1  1
  OXA1L WILD-TYPE 31 43
  OXA1L MUTATED OXA1L WILD-TYPE 
              2              74 
  OXA1L MUTATED OXA1L WILD-TYPE 
              1              43 
$`OXA1L MUTATED`
TCGA-EE-A181 TCGA-FW-A3R5 
        1.12         1.02 

$`OXA1L WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D 
       12.20         4.27        36.07         5.13        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       38.63         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 
       28.64        42.84        78.44         6.58         8.81        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       24.85        31.33        84.72        10.09        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  OXA1L MUTATED OXA1L WILD-TYPE 
           1.02            1.08 
  OXA1L MUTATED OXA1L WILD-TYPE 
           1.12           98.76 
  OXA1L MUTATED OXA1L WILD-TYPE 
          1.070          13.155 
[1] "1.0 - 1.1 (1.1)"   "1.1 - 98.8 (13.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "OXA1L MUTATED" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" "OXA1L WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "OXA1L MUTATED" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" "OXA1L WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "OXA1L MUTATED" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" "OXA1L WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
[1] "Remove cluster labels:" "OXA1L MUTATED"         
clus
  OXA1L MUTATED OXA1L WILD-TYPE 
              2              74 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X      TCGA-EE-A2A0 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J      TCGA-ER-A19L 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1      TCGA-ER-A3ET 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZR      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
D37V2, continuous
D37V3, binary
                 cls
clus                0   1
  OXA1L MUTATED     0   4
  OXA1L WILD-TYPE  32 101
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OXA1L MUTATED      0    4
  OXA1L WILD-TYPE   32  101
                                                                                          clus
vv                                                                                         OXA1L MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                  4
                                                                                          clus
vv                                                                                         OXA1L WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                  101
D37V4, binary
                 cls
clus               0  1
  OXA1L MUTATED    1  3
  OXA1L WILD-TYPE 45 88
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OXA1L MUTATED      1    3
  OXA1L WILD-TYPE   45   88
        clus
vv       OXA1L MUTATED OXA1L WILD-TYPE
  FEMALE             1              45
  MALE               3              88
                 vv
clus               M0  M1 M1A M1B M1C
  OXA1L MUTATED     4   0   0   0   0
  OXA1L WILD-TYPE 115   1   1   2   1
D37V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OXA1L MUTATED    2  0   1   0  1   0   0   0  0  0
  OXA1L WILD-TYPE 69  2   5  11  0   4  10   4 15  1
D37V6, multiclass
D37V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OXA1L MUTATED             0       0        0        0        2         0
  OXA1L WILD-TYPE           1      15        8       12       14         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OXA1L MUTATED           0         0         1          1          0
  OXA1L WILD-TYPE         7         4         6          4         16
                 vv
clus              STAGE IIIC STAGE IV
  OXA1L MUTATED            0        0
  OXA1L WILD-TYPE         19        3
D37V8, multiclass

Clustering(38) Variable = AREG MUTATION ANALYSIS
D38V1, survival
                sevent
clus2             0  1
  AREG MUTATED    2  1
  AREG WILD-TYPE 30 43
  AREG MUTATED AREG WILD-TYPE 
             3             73 
  AREG MUTATED AREG WILD-TYPE 
             1             43 
$`AREG MUTATED`
TCGA-D9-A3Z1 TCGA-ER-A19D TCGA-FW-A3R5 
        4.01         3.52         1.02 

$`AREG WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z3 
       45.70        13.32        24.00         9.30         5.39         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
        7.00        17.56        14.83        11.57         6.31         1.12 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D 
       12.20         4.27        36.07         5.13        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       38.63         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        9.67         8.94        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 
       42.84        78.44         6.58         8.81        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       31.33        84.72        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  AREG MUTATED AREG WILD-TYPE 
          1.02           1.08 
  AREG MUTATED AREG WILD-TYPE 
          4.01          98.76 
  AREG MUTATED AREG WILD-TYPE 
          3.52          13.32 
[1] "1.0 - 4.0 (3.5)"   "1.1 - 98.8 (13.3)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"AREG WILD-TYPE" "AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"AREG WILD-TYPE" "AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"AREG WILD-TYPE" "AREG WILD-TYPE"   "AREG MUTATED" "AREG WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" "AREG WILD-TYPE" 
[1] "hr=" "18" 
D38V2, continuous
D38V3, binary
                cls
clus               0   1
  AREG MUTATED     1   5
  AREG WILD-TYPE  31 100
[1] "tbl2"
                cls
clus             [,1] [,2]
  AREG MUTATED      1    5
  AREG WILD-TYPE   31  100
                                                                                          clus
vv                                                                                         AREG MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                 5
                                                                                          clus
vv                                                                                         AREG WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                 100
D38V4, binary
                cls
clus              0  1
  AREG MUTATED    3  3
  AREG WILD-TYPE 43 88
[1] "tbl2"
                cls
clus             [,1] [,2]
  AREG MUTATED      3    3
  AREG WILD-TYPE   43   88
        clus
vv       AREG MUTATED AREG WILD-TYPE
  FEMALE            3             43
  MALE              3             88
                vv
clus              M0  M1 M1A M1B M1C
  AREG MUTATED     5   0   0   0   0
  AREG WILD-TYPE 114   1   1   2   1
D38V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  AREG MUTATED    3  0   0   0  1   0   0   0  1  0
  AREG WILD-TYPE 68  2   6  11  0   4  10   4 14  1
D38V6, multiclass
D38V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  AREG MUTATED             0       0        1        2        0         0
  AREG WILD-TYPE           1      15        7       10       16         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AREG MUTATED           0         0         1          0          0          1
  AREG WILD-TYPE         7         4         6          5         16         18
                vv
clus             STAGE IV
  AREG MUTATED          0
  AREG WILD-TYPE        3
D38V8, multiclass

Clustering(39) Variable = HBG2 MUTATION ANALYSIS
D39V1, survival
                sevent
clus2             0  1
  HBG2 MUTATED    3  0
  HBG2 WILD-TYPE 29 44
  HBG2 MUTATED HBG2 WILD-TYPE 
             3             73 
  HBG2 MUTATED HBG2 WILD-TYPE 
             0             44 
$`HBG2 MUTATED`
TCGA-DA-A3F8 TCGA-EE-A29S TCGA-FW-A3R5 
       14.83         9.99         1.02 

$`HBG2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       19.36         7.00        17.56        11.57         6.31         1.12 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D 
       12.20         4.27        36.07         5.13        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       38.63         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        8.84         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 
       42.84        78.44         6.58         8.81        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       31.33        84.72        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  HBG2 MUTATED HBG2 WILD-TYPE 
          1.02           1.08 
  HBG2 MUTATED HBG2 WILD-TYPE 
         14.83          98.76 
  HBG2 MUTATED HBG2 WILD-TYPE 
          9.99          12.99 
[1] "1.0 - 14.8 (10.0)" "1.1 - 98.8 (13.0)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JK     TCGA-D3-A3C6 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF     TCGA-D3-A3MO 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3MV     TCGA-D9-A3Z1     TCGA-D9-A3Z3     TCGA-DA-A1HV 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1HW     TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I7     TCGA-DA-A1I8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2     TCGA-DA-A3F3 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X     TCGA-EE-A17Z 
"HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A181     TCGA-EE-A183     TCGA-EE-A185     TCGA-EE-A20B 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S     TCGA-EE-A29X 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A0     TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A6     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19M     TCGA-ER-A19N     TCGA-ER-A1A1 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1ZR     TCGA-FW-A3R5     TCGA-GN-A261 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" 
    TCGA-GN-A262     TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A267     TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
[1] "hr="     "9300000"
D39V2, continuous
D39V3, binary
                cls
clus               0   1
  HBG2 MUTATED     2   4
  HBG2 WILD-TYPE  30 101
[1] "tbl2"
                cls
clus             [,1] [,2]
  HBG2 MUTATED      2    4
  HBG2 WILD-TYPE   30  101
                                                                                          clus
vv                                                                                         HBG2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            2
  REGIONAL LYMPH NODE                                                                                 4
                                                                                          clus
vv                                                                                         HBG2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             30
  REGIONAL LYMPH NODE                                                                                 101
D39V4, binary
                cls
clus              0  1
  HBG2 MUTATED    2  4
  HBG2 WILD-TYPE 44 87
[1] "tbl2"
                cls
clus             [,1] [,2]
  HBG2 MUTATED      2    4
  HBG2 WILD-TYPE   44   87
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  FEMALE            2             44
  MALE              4             87
                vv
clus              M0  M1 M1A M1B M1C
  HBG2 MUTATED     6   0   0   0   0
  HBG2 WILD-TYPE 113   1   1   2   1
D39V5, multiclass
                vv
clus             N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  HBG2 MUTATED    4  0   0   0  1   0   1   0  0  0
  HBG2 WILD-TYPE 67  2   6  11  0   4   9   4 15  1
D39V6, multiclass
D39V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  HBG2 MUTATED             0       0        0        0        2         1
  HBG2 WILD-TYPE           1      15        8       12       14         5
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  HBG2 MUTATED           0         1         1          0          1          0
  HBG2 WILD-TYPE         7         3         6          5         15         19
                vv
clus             STAGE IV
  HBG2 MUTATED          0
  HBG2 WILD-TYPE        3
D39V8, multiclass

Clustering(40) Variable = SERPINB4 MUTATION ANALYSIS
D40V1, survival
                    sevent
clus2                 0  1
  SERPINB4 MUTATED    6  7
  SERPINB4 WILD-TYPE 26 37
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                13                 63 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                 7                 37 
$`SERPINB4 MUTATED`
TCGA-D3-A1Q6 TCGA-DA-A1I0 TCGA-DA-A1IC TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A181 
       70.16        10.03         6.64        14.83        11.57         1.12 
TCGA-EE-A29E TCGA-EE-A29R TCGA-EE-A29S TCGA-ER-A19M TCGA-ER-A1A1 TCGA-FW-A3R5 
       38.63         8.84         9.99        28.64        78.44         1.02 
TCGA-GN-A267 
       16.21 

$`SERPINB4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
        8.38        21.14        11.41         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       48.79        35.80        51.12        39.19        13.68         9.99 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       36.69        25.15        22.36        19.36         7.00        17.56 
TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
        6.31        12.20         4.27        36.07         5.13        37.97 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       11.15         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A3ET 
        3.52        11.11         4.18        12.99        42.84         6.58 
TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        8.81        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
              1.02               1.08 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
             78.44              98.76 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
             11.57              12.99 
[1] "1.0 - 78.4 (11.6)" "1.1 - 98.8 (13.0)"
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED"   "SERPINB4 MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A26D 
"SERPINB4 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED"   "SERPINB4 MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A26D 
"SERPINB4 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED"   "SERPINB4 MUTATED" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-GN-A26D 
"SERPINB4 WILD-TYPE" 
[1] "hr=" "1.1"
D40V2, continuous
D40V3, binary
                    cls
clus                  0  1
  SERPINB4 MUTATED    3 17
  SERPINB4 WILD-TYPE 29 88
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB4 MUTATED      3   17
  SERPINB4 WILD-TYPE   29   88
                                                                                          clus
vv                                                                                         SERPINB4 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                3
  REGIONAL LYMPH NODE                                                                                    17
                                                                                          clus
vv                                                                                         SERPINB4 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 29
  REGIONAL LYMPH NODE                                                                                      88
D40V4, binary
                    cls
clus                  0  1
  SERPINB4 MUTATED    2 18
  SERPINB4 WILD-TYPE 44 73
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB4 MUTATED      2   18
  SERPINB4 WILD-TYPE   44   73
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  FEMALE                2                 44
  MALE                 18                 73
                    vv
clus                  M0  M1 M1A M1B M1C
  SERPINB4 MUTATED    19   0   1   0   0
  SERPINB4 WILD-TYPE 100   1   0   2   1
D40V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  SERPINB4 MUTATED   10  0   2   3  1   0   1   1  2  0
  SERPINB4 WILD-TYPE 61  2   4   8  0   4   9   3 13  1
D40V6, multiclass
D40V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SERPINB4 MUTATED             0       2        2        1        3         1
  SERPINB4 WILD-TYPE           1      13        6       11       13         5
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SERPINB4 MUTATED           1         0         2          2          3
  SERPINB4 WILD-TYPE         6         4         5          3         13
                    vv
clus                 STAGE IIIC STAGE IV
  SERPINB4 MUTATED            3        0
  SERPINB4 WILD-TYPE         16        3
D40V8, multiclass

Clustering(41) Variable = SPTLC3 MUTATION ANALYSIS
D41V1, survival
                  sevent
clus2               0  1
  SPTLC3 MUTATED    4  2
  SPTLC3 WILD-TYPE 28 42
  SPTLC3 MUTATED SPTLC3 WILD-TYPE 
               6               70 
  SPTLC3 MUTATED SPTLC3 WILD-TYPE 
               2               42 
$`SPTLC3 MUTATED`
TCGA-D3-A2J8 TCGA-DA-A1HV TCGA-EE-A181 TCGA-EE-A29S TCGA-EE-A2A2 TCGA-FW-A3R5 
        8.38        48.79         1.12         9.99        23.90         1.02 

$`SPTLC3 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       10.26        21.14        11.41         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       35.80        51.12        10.03        39.19        13.68         9.99 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 
       17.56        14.83        11.57         6.31        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
       36.07         5.13        37.97        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29X 
        1.08         9.47        12.03         8.12         8.84         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       11.31        25.28         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        8.81        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  SPTLC3 MUTATED SPTLC3 WILD-TYPE 
            1.02             1.08 
  SPTLC3 MUTATED SPTLC3 WILD-TYPE 
           48.79            98.76 
  SPTLC3 MUTATED SPTLC3 WILD-TYPE 
           9.185           13.155 
[1] "1.0 - 48.8 (9.2)"  "1.1 - 98.8 (13.2)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "SPTLC3 MUTATED" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" "SPTLC3 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "SPTLC3 MUTATED" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" "SPTLC3 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
  "SPTLC3 MUTATED" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" "SPTLC3 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE"   "SPTLC3 MUTATED" "SPTLC3 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" "SPTLC3 WILD-TYPE" 
[1] "hr=" "1.3"
D41V2, continuous
D41V3, binary
                  cls
clus                0  1
  SPTLC3 MUTATED    1 13
  SPTLC3 WILD-TYPE 31 92
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPTLC3 MUTATED      1   13
  SPTLC3 WILD-TYPE   31   92
                                                                                          clus
vv                                                                                         SPTLC3 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              1
  REGIONAL LYMPH NODE                                                                                  13
                                                                                          clus
vv                                                                                         SPTLC3 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               31
  REGIONAL LYMPH NODE                                                                                    92
D41V4, binary
                  cls
clus                0  1
  SPTLC3 MUTATED    4 10
  SPTLC3 WILD-TYPE 42 81
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPTLC3 MUTATED      4   10
  SPTLC3 WILD-TYPE   42   81
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  FEMALE              4               42
  MALE               10               81
                  vv
clus                M0  M1 M1A M1B M1C
  SPTLC3 MUTATED    14   0   0   0   0
  SPTLC3 WILD-TYPE 105   1   1   2   1
D41V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  SPTLC3 MUTATED   11  0   0   1  1   0   1   0  0  0
  SPTLC3 WILD-TYPE 60  2   6  10  0   4   9   4 15  1
D41V6, multiclass
D41V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SPTLC3 MUTATED             0       0        1        2        5         2
  SPTLC3 WILD-TYPE           1      15        7       10       11         4
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SPTLC3 MUTATED           1         0         1          0          2
  SPTLC3 WILD-TYPE         6         4         6          5         14
                  vv
clus               STAGE IIIC STAGE IV
  SPTLC3 MUTATED            0        0
  SPTLC3 WILD-TYPE         19        3
D41V8, multiclass

Clustering(42) Variable = TAF1A MUTATION ANALYSIS
D42V1, survival
                 sevent
clus2              0  1
  TAF1A MUTATED    0  4
  TAF1A WILD-TYPE 32 40
  TAF1A MUTATED TAF1A WILD-TYPE 
              4              72 
  TAF1A MUTATED TAF1A WILD-TYPE 
              4              40 
$`TAF1A MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A2JK TCGA-D3-A3CE TCGA-GN-A26A 
       16.47         6.35        13.32        12.16 

$`TAF1A WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       32.55        70.16        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CF 
        8.38        21.14        11.41        15.25        45.70        24.00 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        9.30         5.39         4.01         2.86        48.79        35.80 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 
       51.12        10.03        39.19        13.68         9.99        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       25.15        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 
       14.83        11.57         6.31         1.12        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
       36.07         5.13        37.97        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        1.08         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 
       78.44         6.58         8.81         1.02        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       31.33        84.72        10.09        16.21        15.39        14.70 

  TAF1A MUTATED TAF1A WILD-TYPE 
           6.35            1.02 
  TAF1A MUTATED TAF1A WILD-TYPE 
          16.47           98.76 
  TAF1A MUTATED TAF1A WILD-TYPE 
         12.740          12.595 
[1] "6.3 - 16.5 (12.7)" "1.0 - 98.8 (12.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
[1] "hr=" "2.3"
D42V2, continuous
D42V3, binary
                 cls
clus               0  1
  TAF1A MUTATED    1  8
  TAF1A WILD-TYPE 31 97
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAF1A MUTATED      1    8
  TAF1A WILD-TYPE   31   97
                                                                                          clus
vv                                                                                         TAF1A MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  8
                                                                                          clus
vv                                                                                         TAF1A WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   97
D42V4, binary
                 cls
clus               0  1
  TAF1A MUTATED    4  5
  TAF1A WILD-TYPE 42 86
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAF1A MUTATED      4    5
  TAF1A WILD-TYPE   42   86
        clus
vv       TAF1A MUTATED TAF1A WILD-TYPE
  FEMALE             4              42
  MALE               5              86
                 vv
clus               M0  M1 M1A M1B M1C
  TAF1A MUTATED     8   0   0   1   0
  TAF1A WILD-TYPE 111   1   1   1   1
D42V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  TAF1A MUTATED    3  0   1   1  0   0   2   0  2  0
  TAF1A WILD-TYPE 68  2   5  10  1   4   8   4 13  1
D42V6, multiclass
D42V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TAF1A MUTATED             0       1        0        1        1         0
  TAF1A WILD-TYPE           1      14        8       11       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TAF1A MUTATED           0         0         1          1          0
  TAF1A WILD-TYPE         7         4         6          4         16
                 vv
clus              STAGE IIIC STAGE IV
  TAF1A MUTATED            3        0
  TAF1A WILD-TYPE         16        3
D42V8, multiclass

Clustering(43) Variable = CLVS2 MUTATION ANALYSIS
D43V1, survival
                 sevent
clus2              0  1
  CLVS2 MUTATED    2  3
  CLVS2 WILD-TYPE 30 41
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              5              71 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              3              41 
$`CLVS2 MUTATED`
TCGA-DA-A1IC TCGA-EE-A181 TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-FW-A3R5 
        6.64         1.12        11.31        25.28         1.02 

$`CLVS2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A3F2 
       13.68         9.99        36.69        25.15        22.36        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 
        7.00        17.56        14.83        11.57         6.31        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        4.27        36.07         5.13        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41         1.08         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
        9.99         8.09        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        6.58         8.81        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  CLVS2 MUTATED CLVS2 WILD-TYPE 
           1.02            1.08 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
          25.28           98.76 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
           6.64           13.32 
[1] "1.0 - 25.3 (6.6)"  "1.1 - 98.8 (13.3)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
  "CLVS2 MUTATED"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
  "CLVS2 MUTATED"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
  "CLVS2 MUTATED"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
[1] "hr=" "2.2"
D43V2, continuous
D43V3, binary
                 cls
clus               0  1
  CLVS2 MUTATED    2 11
  CLVS2 WILD-TYPE 30 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLVS2 MUTATED      2   11
  CLVS2 WILD-TYPE   30   94
                                                                                          clus
vv                                                                                         CLVS2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                 11
                                                                                          clus
vv                                                                                         CLVS2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   94
D43V4, binary
                 cls
clus               0  1
  CLVS2 MUTATED    2 11
  CLVS2 WILD-TYPE 44 80
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLVS2 MUTATED      2   11
  CLVS2 WILD-TYPE   44   80
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  FEMALE             2              44
  MALE              11              80
                 vv
clus               M0  M1 M1A M1B M1C
  CLVS2 MUTATED    12   0   0   0   0
  CLVS2 WILD-TYPE 107   1   1   2   1
D43V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CLVS2 MUTATED    8  0   0   1  1   1   0   1  0  0
  CLVS2 WILD-TYPE 63  2   6  10  0   3  10   3 15  1
D43V6, multiclass
D43V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CLVS2 MUTATED             0       1        2        2        1         1
  CLVS2 WILD-TYPE           1      14        6       10       15         5
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CLVS2 MUTATED           1         0         1          0          2
  CLVS2 WILD-TYPE         6         4         6          5         14
                 vv
clus              STAGE IIIC STAGE IV
  CLVS2 MUTATED            0        0
  CLVS2 WILD-TYPE         19        3
D43V8, multiclass

Clustering(44) Variable = CCDC102B MUTATION ANALYSIS
D44V1, survival
                    sevent
clus2                 0  1
  CCDC102B MUTATED    5  4
  CCDC102B WILD-TYPE 27 40
  CCDC102B MUTATED CCDC102B WILD-TYPE 
                 9                 67 
  CCDC102B MUTATED CCDC102B WILD-TYPE 
                 4                 40 
$`CCDC102B MUTATED`
TCGA-D3-A1Q6 TCGA-DA-A1I1 TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A29E TCGA-EE-A29H 
       70.16        39.19        14.83         1.12        38.63         4.41 
TCGA-ER-A19D TCGA-FW-A3R5 TCGA-GN-A266 
        3.52         1.02        10.09 

$`CCDC102B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
        8.38        21.14        11.41         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 
       48.79        35.80        51.12        10.03        13.68         9.99 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       17.56        11.57         6.31        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
        5.13        37.97        11.15         1.08         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.12         8.84         9.99         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.90         9.67         8.94        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 
       28.64        42.84        78.44         6.58         8.81        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       24.85        31.33        84.72        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  CCDC102B MUTATED CCDC102B WILD-TYPE 
              1.02               1.08 
  CCDC102B MUTATED CCDC102B WILD-TYPE 
             70.16              98.76 
  CCDC102B MUTATED CCDC102B WILD-TYPE 
             10.09              12.99 
[1] "1.0 - 70.2 (10.1)" "1.1 - 98.8 (13.0)"
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE"   "CCDC102B MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE"   "CCDC102B MUTATED" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "CCDC102B MUTATED" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
  "CCDC102B MUTATED" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"CCDC102B WILD-TYPE"   "CCDC102B MUTATED"   "CCDC102B MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
  "CCDC102B MUTATED" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "CCDC102B MUTATED" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE"   "CCDC102B MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-GN-A26D 
"CCDC102B WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE"   "CCDC102B MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE"   "CCDC102B MUTATED" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "CCDC102B MUTATED" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
  "CCDC102B MUTATED" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"CCDC102B WILD-TYPE"   "CCDC102B MUTATED"   "CCDC102B MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
  "CCDC102B MUTATED" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "CCDC102B MUTATED" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE"   "CCDC102B MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-GN-A26D 
"CCDC102B WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE"   "CCDC102B MUTATED" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JK         TCGA-D3-A3C6 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D3-A3CC         TCGA-D3-A3CE         TCGA-D3-A3CF 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D3-A3MO         TCGA-D3-A3MV         TCGA-D9-A3Z1 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-D9-A3Z3         TCGA-DA-A1HV         TCGA-DA-A1HW 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE"   "CCDC102B MUTATED" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I7 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-DA-A1I8         TCGA-DA-A1IB         TCGA-DA-A1IC 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-DA-A3F2         TCGA-DA-A3F3         TCGA-DA-A3F5 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-DA-A3F8         TCGA-EE-A17X         TCGA-EE-A17Z 
  "CCDC102B MUTATED" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A181         TCGA-EE-A183         TCGA-EE-A185 
  "CCDC102B MUTATED" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A29C 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A29D         TCGA-EE-A29E         TCGA-EE-A29H 
"CCDC102B WILD-TYPE"   "CCDC102B MUTATED"   "CCDC102B MUTATED" 
        TCGA-EE-A29L         TCGA-EE-A29N         TCGA-EE-A29P 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A29X         TCGA-EE-A2A0         TCGA-EE-A2A1 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-EE-A2A2         TCGA-EE-A2A5         TCGA-EE-A2A6 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
  "CCDC102B MUTATED" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19M         TCGA-ER-A19N 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-ER-A1A1         TCGA-ER-A3ET         TCGA-FS-A1ZR 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-FW-A3R5         TCGA-GN-A261         TCGA-GN-A262 
  "CCDC102B MUTATED" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-GN-A264         TCGA-GN-A265         TCGA-GN-A266 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE"   "CCDC102B MUTATED" 
        TCGA-GN-A267         TCGA-GN-A268         TCGA-GN-A26A 
"CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" "CCDC102B WILD-TYPE" 
        TCGA-GN-A26D 
"CCDC102B WILD-TYPE" 
[1] "hr=" "1.3"
D44V2, continuous
D44V3, binary
                    cls
clus                  0  1
  CCDC102B MUTATED    4 11
  CCDC102B WILD-TYPE 28 94
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  CCDC102B MUTATED      4   11
  CCDC102B WILD-TYPE   28   94
                                                                                          clus
vv                                                                                         CCDC102B MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                4
  REGIONAL LYMPH NODE                                                                                    11
                                                                                          clus
vv                                                                                         CCDC102B WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 28
  REGIONAL LYMPH NODE                                                                                      94
D44V4, binary
                    cls
clus                  0  1
  CCDC102B MUTATED    4 11
  CCDC102B WILD-TYPE 42 80
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  CCDC102B MUTATED      4   11
  CCDC102B WILD-TYPE   42   80
        clus
vv       CCDC102B MUTATED CCDC102B WILD-TYPE
  FEMALE                4                 42
  MALE                 11                 80
                    vv
clus                  M0  M1 M1A M1B M1C
  CCDC102B MUTATED    13   0   0   0   0
  CCDC102B WILD-TYPE 106   1   1   2   1
D44V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CCDC102B MUTATED    7  0   0   3  1   0   1   0  1  0
  CCDC102B WILD-TYPE 64  2   6   8  0   4   9   4 14  1
D44V6, multiclass
D44V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CCDC102B MUTATED             0       2        1        2        2         0
  CCDC102B WILD-TYPE           1      13        7       10       14         6
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CCDC102B MUTATED           0         0         2          0          3
  CCDC102B WILD-TYPE         7         4         5          5         13
                    vv
clus                 STAGE IIIC STAGE IV
  CCDC102B MUTATED            1        0
  CCDC102B WILD-TYPE         18        3
D44V8, multiclass

Clustering(45) Variable = OR4N2 MUTATION ANALYSIS
D45V1, survival
                 sevent
clus2              0  1
  OR4N2 MUTATED    5  3
  OR4N2 WILD-TYPE 27 41
  OR4N2 MUTATED OR4N2 WILD-TYPE 
              8              68 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
              3              41 
$`OR4N2 MUTATED`
TCGA-DA-A1I0 TCGA-DA-A3F8 TCGA-EE-A29E TCGA-EE-A29S TCGA-ER-A19F TCGA-FW-A3R5 
       10.03        14.83        38.63         9.99        11.11         1.02 
TCGA-GN-A262 TCGA-GN-A266 
       24.85        10.09 

$`OR4N2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        48.79        35.80        51.12        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
        7.00        17.56        11.57         6.31         1.12        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H 
        4.27        36.07         5.13        37.97        11.15         4.41 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29X 
        1.08         9.47        12.03         8.12         8.84         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
       11.31        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
        8.81        15.35        31.33        84.72        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  OR4N2 MUTATED OR4N2 WILD-TYPE 
           1.02            1.08 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
          38.63           98.76 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
         10.600          13.155 
[1] "1.0 - 38.6 (10.6)" "1.1 - 98.8 (13.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
[1] "hr=" "1.3"
D45V2, continuous
D45V3, binary
                 cls
clus               0  1
  OR4N2 MUTATED    4 11
  OR4N2 WILD-TYPE 28 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4N2 MUTATED      4   11
  OR4N2 WILD-TYPE   28   94
                                                                                          clus
vv                                                                                         OR4N2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             4
  REGIONAL LYMPH NODE                                                                                 11
                                                                                          clus
vv                                                                                         OR4N2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              28
  REGIONAL LYMPH NODE                                                                                   94
D45V4, binary
                 cls
clus               0  1
  OR4N2 MUTATED    1 14
  OR4N2 WILD-TYPE 45 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4N2 MUTATED      1   14
  OR4N2 WILD-TYPE   45   77
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  FEMALE             1              45
  MALE              14              77
                 vv
clus               M0  M1 M1A M1B M1C
  OR4N2 MUTATED    12   0   1   0   0
  OR4N2 WILD-TYPE 107   1   0   2   1
D45V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OR4N2 MUTATED    9  0   0   1  1   0   1   0  1  0
  OR4N2 WILD-TYPE 62  2   6  10  0   4   9   4 14  1
D45V6, multiclass
D45V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR4N2 MUTATED             0       0        2        1        3         1
  OR4N2 WILD-TYPE           1      15        6       11       13         5
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR4N2 MUTATED           1         0         1          0          2
  OR4N2 WILD-TYPE         6         4         6          5         14
                 vv
clus              STAGE IIIC STAGE IV
  OR4N2 MUTATED            1        0
  OR4N2 WILD-TYPE         18        3
D45V8, multiclass

Clustering(46) Variable = OR8D4 MUTATION ANALYSIS
D46V1, survival
                 sevent
clus2              0  1
  OR8D4 MUTATED    3  1
  OR8D4 WILD-TYPE 29 43
  OR8D4 MUTATED OR8D4 WILD-TYPE 
              4              72 
  OR8D4 MUTATED OR8D4 WILD-TYPE 
              1              43 
$`OR8D4 MUTATED`
TCGA-DA-A1HV TCGA-EE-A29D TCGA-EE-A2A1 TCGA-FW-A3R5 
       48.79        11.15        25.28         1.02 

$`OR8D4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
        7.00        17.56        14.83        11.57         6.31         1.12 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E 
       12.20         4.27        36.07         5.13        37.97        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41         1.08         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        9.99         8.09        11.31        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       78.44         6.58         8.81        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        16.21        15.39        12.16        14.70 

  OR8D4 MUTATED OR8D4 WILD-TYPE 
           1.02            1.08 
  OR8D4 MUTATED OR8D4 WILD-TYPE 
          48.79           98.76 
  OR8D4 MUTATED OR8D4 WILD-TYPE 
         18.215          12.595 
[1] "1.0 - 48.8 (18.2)" "1.1 - 98.8 (12.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE"   "OR8D4 MUTATED" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE"   "OR8D4 MUTATED" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR8D4 WILD-TYPE"   "OR8D4 MUTATED" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE"   "OR8D4 MUTATED" "OR8D4 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE"   "OR8D4 MUTATED" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE"   "OR8D4 MUTATED" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR8D4 WILD-TYPE"   "OR8D4 MUTATED" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE"   "OR8D4 MUTATED" "OR8D4 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE"   "OR8D4 MUTATED" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE"   "OR8D4 MUTATED" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR8D4 WILD-TYPE"   "OR8D4 MUTATED" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE"   "OR8D4 MUTATED" "OR8D4 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" "OR8D4 WILD-TYPE" 
[1] "hr=" "2.6"
D46V2, continuous
D46V3, binary
                 cls
clus               0  1
  OR8D4 MUTATED    1  8
  OR8D4 WILD-TYPE 31 97
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8D4 MUTATED      1    8
  OR8D4 WILD-TYPE   31   97
                                                                                          clus
vv                                                                                         OR8D4 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  8
                                                                                          clus
vv                                                                                         OR8D4 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   97
D46V4, binary
                 cls
clus               0  1
  OR8D4 MUTATED    3  6
  OR8D4 WILD-TYPE 43 85
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8D4 MUTATED      3    6
  OR8D4 WILD-TYPE   43   85
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  FEMALE             3              43
  MALE               6              85
                 vv
clus               M0  M1 M1A M1B M1C
  OR8D4 MUTATED     8   0   0   0   0
  OR8D4 WILD-TYPE 111   1   1   2   1
D46V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OR8D4 MUTATED    4  0   1   1  1   0   1   0  0  0
  OR8D4 WILD-TYPE 67  2   5  10  0   4   9   4 15  1
D46V6, multiclass
D46V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR8D4 MUTATED             0       1        0        1        1         0
  OR8D4 WILD-TYPE           1      14        8       11       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR8D4 MUTATED           1         0         1          0          2
  OR8D4 WILD-TYPE         6         4         6          5         14
                 vv
clus              STAGE IIIC STAGE IV
  OR8D4 MUTATED            1        0
  OR8D4 WILD-TYPE         18        3
D46V8, multiclass

Clustering(47) Variable = RBM11 MUTATION ANALYSIS
D47V1, survival
                 sevent
clus2              0  1
  RBM11 MUTATED    3  1
  RBM11 WILD-TYPE 29 43
  RBM11 MUTATED RBM11 WILD-TYPE 
              4              72 
  RBM11 MUTATED RBM11 WILD-TYPE 
              1              43 
$`RBM11 MUTATED`
TCGA-EE-A181 TCGA-EE-A29H TCGA-EE-A29S TCGA-FW-A3R5 
        1.12         4.41         9.99         1.02 

$`RBM11 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D 
       12.20         4.27        36.07         5.13        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
       38.63         1.08         9.47        12.03         8.12         8.84 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       78.44         6.58         8.81        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        16.21        15.39        12.16        14.70 

  RBM11 MUTATED RBM11 WILD-TYPE 
           1.02            1.08 
  RBM11 MUTATED RBM11 WILD-TYPE 
           9.99           98.76 
  RBM11 MUTATED RBM11 WILD-TYPE 
          2.765          13.500 
[1] "1.0 - 10.0 (2.8)"  "1.1 - 98.8 (13.5)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
  "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
  "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
  "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
[1] "hr=" "2.9"
D47V2, continuous
D47V3, binary
                 cls
clus               0  1
  RBM11 MUTATED    1  9
  RBM11 WILD-TYPE 31 96
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM11 MUTATED      1    9
  RBM11 WILD-TYPE   31   96
                                                                                          clus
vv                                                                                         RBM11 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  9
                                                                                          clus
vv                                                                                         RBM11 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   96
D47V4, binary
                 cls
clus               0  1
  RBM11 MUTATED    2  8
  RBM11 WILD-TYPE 44 83
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM11 MUTATED      2    8
  RBM11 WILD-TYPE   44   83
        clus
vv       RBM11 MUTATED RBM11 WILD-TYPE
  FEMALE             2              44
  MALE               8              83
                 vv
clus               M0  M1 M1A M1B M1C
  RBM11 MUTATED    10   0   0   0   0
  RBM11 WILD-TYPE 109   1   1   2   1
D47V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  RBM11 MUTATED    7  0   1   0  1   0   0   1  0  0
  RBM11 WILD-TYPE 64  2   5  11  0   4  10   3 15  1
D47V6, multiclass
D47V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RBM11 MUTATED             0       3        1        0        2         1
  RBM11 WILD-TYPE           1      12        7       12       14         5
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  RBM11 MUTATED           0         0         2          0          1
  RBM11 WILD-TYPE         7         4         5          5         15
                 vv
clus              STAGE IIIC STAGE IV
  RBM11 MUTATED            0        0
  RBM11 WILD-TYPE         19        3
D47V8, multiclass

Clustering(48) Variable = DEFB118 MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                0  1
  DEFB118 MUTATED    4  1
  DEFB118 WILD-TYPE 28 43
  DEFB118 MUTATED DEFB118 WILD-TYPE 
                5                71 
  DEFB118 MUTATED DEFB118 WILD-TYPE 
                1                43 
$`DEFB118 MUTATED`
TCGA-DA-A1I1 TCGA-EE-A29R TCGA-EE-A2A6 TCGA-ER-A19F TCGA-FW-A3R5 
       39.19         8.84         8.94        11.11         1.02 

$`DEFB118 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 
        2.86        48.79        35.80        51.12        10.03        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
        7.00        17.56        14.83        11.57         6.31         1.12 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D 
       12.20         4.27        36.07         5.13        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       38.63         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        9.99         8.09        11.31        25.28        23.90         9.67 
TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
        3.52         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        6.58         8.81        15.35        24.85        31.33        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  DEFB118 MUTATED DEFB118 WILD-TYPE 
             1.02              1.08 
  DEFB118 MUTATED DEFB118 WILD-TYPE 
            39.19             98.76 
  DEFB118 MUTATED DEFB118 WILD-TYPE 
             8.94             13.32 
[1] "1.0 - 39.2 (8.9)"  "1.1 - 98.8 (13.3)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JK        TCGA-D3-A3C6 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF        TCGA-D3-A3MO 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A181        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29N        TCGA-EE-A29P 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29X 
"DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3R5        TCGA-GN-A261 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265        TCGA-GN-A266 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JK        TCGA-D3-A3C6 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF        TCGA-D3-A3MO 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A181        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29N        TCGA-EE-A29P 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29X 
"DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3R5        TCGA-GN-A261 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265        TCGA-GN-A266 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JK        TCGA-D3-A3C6 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF        TCGA-D3-A3MO 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A181        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29N        TCGA-EE-A29P 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29X 
"DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3R5        TCGA-GN-A261 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265        TCGA-GN-A266 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
[1] "hr=" "2"  
D48V2, continuous
D48V3, binary
                   cls
clus                 0  1
  DEFB118 MUTATED    1  6
  DEFB118 WILD-TYPE 31 99
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB118 MUTATED      1    6
  DEFB118 WILD-TYPE   31   99
                                                                                          clus
vv                                                                                         DEFB118 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               1
  REGIONAL LYMPH NODE                                                                                    6
                                                                                          clus
vv                                                                                         DEFB118 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                31
  REGIONAL LYMPH NODE                                                                                     99
D48V4, binary
                   cls
clus                 0  1
  DEFB118 MUTATED    2  5
  DEFB118 WILD-TYPE 44 86
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB118 MUTATED      2    5
  DEFB118 WILD-TYPE   44   86
        clus
vv       DEFB118 MUTATED DEFB118 WILD-TYPE
  FEMALE               2                44
  MALE                 5                86
                   vv
clus                 M0  M1 M1A M1B M1C
  DEFB118 MUTATED     7   0   0   0   0
  DEFB118 WILD-TYPE 112   1   1   2   1
D48V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEFB118 MUTATED    4  0   0   1  1   0   0   0  1  0
  DEFB118 WILD-TYPE 67  2   6  10  0   4  10   4 14  1
D48V6, multiclass
D48V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEFB118 MUTATED             0       1        1        0        0         0
  DEFB118 WILD-TYPE           1      14        7       12       16         6
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DEFB118 MUTATED           1         0         1          0          0
  DEFB118 WILD-TYPE         6         4         6          5         16
                   vv
clus                STAGE IIIC STAGE IV
  DEFB118 MUTATED            2        0
  DEFB118 WILD-TYPE         17        3
D48V8, multiclass

Clustering(49) Variable = GRXCR1 MUTATION ANALYSIS
D49V1, survival
                  sevent
clus2               0  1
  GRXCR1 MUTATED    4  2
  GRXCR1 WILD-TYPE 28 42
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
               6               70 
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
               2               42 
$`GRXCR1 MUTATED`
TCGA-DA-A3F8 TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29S TCGA-GN-A265 TCGA-GN-A268 
       14.83         1.08        12.03         9.99        84.72        15.39 

$`GRXCR1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       19.36         7.00        17.56        11.57         6.31         1.12 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D 
       12.20         4.27        36.07         5.13        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29X 
       38.63         4.41         9.47         8.12         8.84         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D 
       11.31        25.28        23.90         9.67         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
        6.58         8.81         1.02        15.35        24.85        31.33 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        12.16        14.70 

  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
            1.08             1.02 
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
           84.72            98.76 
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
          13.430           12.595 
[1] "1.1 - 84.7 (13.4)" "1.0 - 98.8 (12.6)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
[1] "hr=" "1.8"
D49V2, continuous
D49V3, binary
                  cls
clus                0  1
  GRXCR1 MUTATED    1 12
  GRXCR1 WILD-TYPE 31 93
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRXCR1 MUTATED      1   12
  GRXCR1 WILD-TYPE   31   93
                                                                                          clus
vv                                                                                         GRXCR1 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              1
  REGIONAL LYMPH NODE                                                                                  12
                                                                                          clus
vv                                                                                         GRXCR1 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               31
  REGIONAL LYMPH NODE                                                                                    93
D49V4, binary
                  cls
clus                0  1
  GRXCR1 MUTATED    4  9
  GRXCR1 WILD-TYPE 42 82
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRXCR1 MUTATED      4    9
  GRXCR1 WILD-TYPE   42   82
        clus
vv       GRXCR1 MUTATED GRXCR1 WILD-TYPE
  FEMALE              4               42
  MALE                9               82
                  vv
clus                M0  M1 M1A M1B M1C
  GRXCR1 MUTATED    12   0   0   0   0
  GRXCR1 WILD-TYPE 107   1   1   2   1
D49V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  GRXCR1 MUTATED   10  0   0   0  0   0   1   0  1  0
  GRXCR1 WILD-TYPE 61  2   6  11  1   4   9   4 14  1
D49V6, multiclass
D49V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GRXCR1 MUTATED             0       1        2        0        3         1
  GRXCR1 WILD-TYPE           1      14        6       12       13         5
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  GRXCR1 MUTATED           2         1         0          0          1
  GRXCR1 WILD-TYPE         5         3         7          5         15
                  vv
clus               STAGE IIIC STAGE IV
  GRXCR1 MUTATED            1        0
  GRXCR1 WILD-TYPE         18        3
D49V8, multiclass

Clustering(50) Variable = RGPD3 MUTATION ANALYSIS
D50V1, survival
                 sevent
clus2              0  1
  RGPD3 MUTATED    4  6
  RGPD3 WILD-TYPE 28 38
  RGPD3 MUTATED RGPD3 WILD-TYPE 
             10              66 
  RGPD3 MUTATED RGPD3 WILD-TYPE 
              6              38 
$`RGPD3 MUTATED`
TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29P 
       28.08        10.26        11.15        38.63         1.08        12.03 
TCGA-EE-A29S TCGA-ER-A19F TCGA-FW-A3R5 TCGA-GN-A266 
        9.99        11.11         1.02        10.09 

$`RGPD3 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J8 
       16.47        32.55        70.16        98.76        22.55         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
       21.14        11.41         6.35        15.25        45.70        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       24.00         9.30         5.39         4.01         2.86        48.79 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       35.80        51.12        10.03        39.19        13.68         9.99 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
       17.56        14.83        11.57         6.31         1.12        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29N 
        4.27        36.07         5.13        37.97         4.41         9.47 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.12         8.84         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        9.67         8.94         3.52         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 
       42.84        78.44         6.58         8.81        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        16.21        15.39        12.16        14.70 

  RGPD3 MUTATED RGPD3 WILD-TYPE 
           1.02            1.12 
  RGPD3 MUTATED RGPD3 WILD-TYPE 
          38.63           98.76 
  RGPD3 MUTATED RGPD3 WILD-TYPE 
         10.685          14.190 
[1] "1.0 - 38.6 (10.7)" "1.1 - 98.8 (14.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
  "RGPD3 MUTATED" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED"   "RGPD3 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
  "RGPD3 MUTATED" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED"   "RGPD3 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
  "RGPD3 MUTATED" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED"   "RGPD3 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" "RGPD3 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE"   "RGPD3 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" "RGPD3 WILD-TYPE" 
[1] "hr=" "1.5"
D50V2, continuous
D50V3, binary
                 cls
clus               0  1
  RGPD3 MUTATED    4 18
  RGPD3 WILD-TYPE 28 87
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RGPD3 MUTATED      4   18
  RGPD3 WILD-TYPE   28   87
                                                                                          clus
vv                                                                                         RGPD3 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             4
  REGIONAL LYMPH NODE                                                                                 18
                                                                                          clus
vv                                                                                         RGPD3 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              28
  REGIONAL LYMPH NODE                                                                                   87
D50V4, binary
                 cls
clus               0  1
  RGPD3 MUTATED    3 19
  RGPD3 WILD-TYPE 43 72
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RGPD3 MUTATED      3   19
  RGPD3 WILD-TYPE   43   72
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  FEMALE             3              43
  MALE              19              72
                 vv
clus              M0 M1 M1A M1B M1C
  RGPD3 MUTATED   20  0   0   1   0
  RGPD3 WILD-TYPE 99  1   1   1   1
D50V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  RGPD3 MUTATED   13  0   2   3  1   0   0   0  2  0
  RGPD3 WILD-TYPE 58  2   4   8  0   4  10   4 13  1
D50V6, multiclass
D50V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RGPD3 MUTATED             0       2        1        0        4         2
  RGPD3 WILD-TYPE           1      13        7       12       12         4
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  RGPD3 MUTATED           2         1         1          1          3
  RGPD3 WILD-TYPE         5         3         6          4         13
                 vv
clus              STAGE IIIC STAGE IV
  RGPD3 MUTATED            2        1
  RGPD3 WILD-TYPE         17        2
D50V8, multiclass

Clustering(51) Variable = CA1 MUTATION ANALYSIS
D51V1, survival
               sevent
clus2            0  1
  CA1 MUTATED    0  3
  CA1 WILD-TYPE 32 41
  CA1 MUTATED CA1 WILD-TYPE 
            3            73 
  CA1 MUTATED CA1 WILD-TYPE 
            3            41 
$`CA1 MUTATED`
TCGA-DA-A3F3 TCGA-EE-A29D TCGA-GN-A266 
        7.00        11.15        10.09 

$`CA1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       19.36        17.56        14.83        11.57         6.31         1.12 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E 
       12.20         4.27        36.07         5.13        37.97        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41         1.08         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        9.99         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         1.02        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       24.85        31.33        84.72        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  CA1 MUTATED CA1 WILD-TYPE 
         7.00          1.02 
  CA1 MUTATED CA1 WILD-TYPE 
        11.15         98.76 
  CA1 MUTATED CA1 WILD-TYPE 
        10.09         13.32 
[1] "7.0 - 11.2 (10.1)" "1.0 - 98.8 (13.3)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"CA1 WILD-TYPE"   "CA1 MUTATED" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
"CA1 WILD-TYPE" "CA1 WILD-TYPE"   "CA1 MUTATED" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
"CA1 WILD-TYPE"   "CA1 MUTATED" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-GN-A26D 
"CA1 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"CA1 WILD-TYPE"   "CA1 MUTATED" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
"CA1 WILD-TYPE" "CA1 WILD-TYPE"   "CA1 MUTATED" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
"CA1 WILD-TYPE"   "CA1 MUTATED" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-GN-A26D 
"CA1 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE    TCGA-D3-A3CF 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A3Z1    TCGA-D9-A3Z3    TCGA-DA-A1HV 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-DA-A1HW    TCGA-DA-A1HY    TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-DA-A1I4    TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IB    TCGA-DA-A1IC 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"CA1 WILD-TYPE"   "CA1 MUTATED" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A183    TCGA-EE-A185    TCGA-EE-A20B 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A20F    TCGA-EE-A29C    TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H 
"CA1 WILD-TYPE" "CA1 WILD-TYPE"   "CA1 MUTATED" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A29L    TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A29S    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1    TCGA-EE-A2A2 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-ER-A19D    TCGA-ER-A19F    TCGA-ER-A19J 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-ER-A19L    TCGA-ER-A19M    TCGA-ER-A19N    TCGA-ER-A1A1    TCGA-ER-A3ET 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-FS-A1ZR    TCGA-FW-A3R5    TCGA-GN-A261    TCGA-GN-A262    TCGA-GN-A264 
"CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267    TCGA-GN-A268    TCGA-GN-A26A 
"CA1 WILD-TYPE"   "CA1 MUTATED" "CA1 WILD-TYPE" "CA1 WILD-TYPE" "CA1 WILD-TYPE" 
   TCGA-GN-A26D 
"CA1 WILD-TYPE" 
[1] "hr=" "4.2"
D51V2, continuous
D51V3, binary
               cls
clus             0  1
  CA1 MUTATED    2  6
  CA1 WILD-TYPE 30 99
[1] "tbl2"
               cls
clus            [,1] [,2]
  CA1 MUTATED      2    6
  CA1 WILD-TYPE   30   99
                                                                                          clus
vv                                                                                         CA1 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           2
  REGIONAL LYMPH NODE                                                                                6
                                                                                          clus
vv                                                                                         CA1 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            30
  REGIONAL LYMPH NODE                                                                                 99
D51V4, binary
               cls
clus             0  1
  CA1 MUTATED    1  7
  CA1 WILD-TYPE 45 84
[1] "tbl2"
               cls
clus            [,1] [,2]
  CA1 MUTATED      1    7
  CA1 WILD-TYPE   45   84
        clus
vv       CA1 MUTATED CA1 WILD-TYPE
  FEMALE           1            45
  MALE             7            84
               vv
clus             M0  M1 M1A M1B M1C
  CA1 MUTATED     6   0   0   0   0
  CA1 WILD-TYPE 113   1   1   2   1
D51V5, multiclass
               vv
clus            N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CA1 MUTATED    3  0   1   1  0   0   1   0  0  0
  CA1 WILD-TYPE 68  2   5  10  1   4   9   4 15  1
D51V6, multiclass
D51V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CA1 MUTATED             0       1        1        0        1         0
  CA1 WILD-TYPE           1      14        7       12       15         6
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  CA1 MUTATED           0         0         0          1          1          1
  CA1 WILD-TYPE         7         4         7          4         15         18
               vv
clus            STAGE IV
  CA1 MUTATED          0
  CA1 WILD-TYPE        3
D51V8, multiclass

Clustering(52) Variable = HNF4G MUTATION ANALYSIS
D52V1, survival
                 sevent
clus2              0  1
  HNF4G MUTATED    2  0
  HNF4G WILD-TYPE 30 44
  HNF4G MUTATED HNF4G WILD-TYPE 
              2              74 
  HNF4G MUTATED HNF4G WILD-TYPE 
              0              44 
$`HNF4G MUTATED`
TCGA-EE-A29E TCGA-FW-A3R5 
       38.63         1.02 

$`HNF4G WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
        1.12        12.20         4.27        36.07         5.13        37.97 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       11.15         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 
       28.64        42.84        78.44         6.58         8.81        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       24.85        31.33        84.72        10.09        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  HNF4G MUTATED HNF4G WILD-TYPE 
           1.02            1.08 
  HNF4G MUTATED HNF4G WILD-TYPE 
          38.63           98.76 
  HNF4G MUTATED HNF4G WILD-TYPE 
         19.825          12.595 
[1] "1.0 - 38.6 (19.8)" "1.1 - 98.8 (12.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE"   "HNF4G MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE"   "HNF4G MUTATED" "HNF4G WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE"   "HNF4G MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE"   "HNF4G MUTATED" "HNF4G WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE"   "HNF4G MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE"   "HNF4G MUTATED" "HNF4G WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
[1] "Remove cluster labels:" "HNF4G MUTATED"         
clus
  HNF4G MUTATED HNF4G WILD-TYPE 
              2              74 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29H 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X      TCGA-EE-A2A0 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J      TCGA-ER-A19L 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1      TCGA-ER-A3ET 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-FS-A1ZR      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"HNF4G WILD-TYPE" "HNF4G WILD-TYPE" 
D52V2, continuous
D52V3, binary
                 cls
clus               0  1
  HNF4G MUTATED    3 12
  HNF4G WILD-TYPE 29 93
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HNF4G MUTATED      3   12
  HNF4G WILD-TYPE   29   93
                                                                                          clus
vv                                                                                         HNF4G MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                 12
                                                                                          clus
vv                                                                                         HNF4G WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   93
D52V4, binary
                 cls
clus               0  1
  HNF4G MUTATED    3 12
  HNF4G WILD-TYPE 43 79
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HNF4G MUTATED      3   12
  HNF4G WILD-TYPE   43   79
        clus
vv       HNF4G MUTATED HNF4G WILD-TYPE
  FEMALE             3              43
  MALE              12              79
                 vv
clus               M0  M1 M1A M1B M1C
  HNF4G MUTATED    14   0   0   0   0
  HNF4G WILD-TYPE 105   1   1   2   1
D52V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  HNF4G MUTATED    9  0   1   2  1   0   0   0  0  1
  HNF4G WILD-TYPE 62  2   5   9  0   4  10   4 15  0
D52V6, multiclass
D52V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  HNF4G MUTATED             0       2        2        1        3         0
  HNF4G WILD-TYPE           1      13        6       11       13         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  HNF4G MUTATED           1         0         1          0          2
  HNF4G WILD-TYPE         6         4         6          5         14
                 vv
clus              STAGE IIIC STAGE IV
  HNF4G MUTATED            0        0
  HNF4G WILD-TYPE         19        3
D52V8, multiclass

Clustering(53) Variable = ACTL7B MUTATION ANALYSIS
D53V1, survival
                  sevent
clus2               0  1
  ACTL7B MUTATED    1  0
  ACTL7B WILD-TYPE 31 44
  ACTL7B MUTATED ACTL7B WILD-TYPE 
               1               75 
  ACTL7B MUTATED ACTL7B WILD-TYPE 
               0               44 
$`ACTL7B MUTATED`
TCGA-FW-A3R5 
        1.02 

$`ACTL7B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
        1.12        12.20         4.27        36.07         5.13        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
       11.15        38.63         4.41         1.08         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.12         8.84         9.99         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       15.35        24.85        31.33        84.72        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  ACTL7B MUTATED ACTL7B WILD-TYPE 
            1.02             1.08 
  ACTL7B MUTATED ACTL7B WILD-TYPE 
            1.02            98.76 
  ACTL7B MUTATED ACTL7B WILD-TYPE 
            1.02            12.99 
[1] "1.0 - 1.0 (1.0)"   "1.1 - 98.8 (13.0)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE"   "ACTL7B MUTATED" "ACTL7B WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE"   "ACTL7B MUTATED" "ACTL7B WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE"   "ACTL7B MUTATED" "ACTL7B WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
[1] "Remove cluster labels:" "ACTL7B MUTATED"        
clus
  ACTL7B MUTATED ACTL7B WILD-TYPE 
               1               75 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-GN-A261       TCGA-GN-A262 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
      TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" "ACTL7B WILD-TYPE" 
D53V2, continuous
D53V3, binary
                  cls
clus                0  1
  ACTL7B MUTATED    1  7
  ACTL7B WILD-TYPE 31 98
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACTL7B MUTATED      1    7
  ACTL7B WILD-TYPE   31   98
                                                                                          clus
vv                                                                                         ACTL7B MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              1
  REGIONAL LYMPH NODE                                                                                   7
                                                                                          clus
vv                                                                                         ACTL7B WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               31
  REGIONAL LYMPH NODE                                                                                    98
D53V4, binary
                  cls
clus                0  1
  ACTL7B MUTATED    3  5
  ACTL7B WILD-TYPE 43 86
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACTL7B MUTATED      3    5
  ACTL7B WILD-TYPE   43   86
        clus
vv       ACTL7B MUTATED ACTL7B WILD-TYPE
  FEMALE              3               43
  MALE                5               86
                  vv
clus                M0  M1 M1A M1B M1C
  ACTL7B MUTATED     5   0   0   0   0
  ACTL7B WILD-TYPE 114   1   1   2   1
D53V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  ACTL7B MUTATED    3  0   0   0  1   0   0   0  0  1
  ACTL7B WILD-TYPE 68  2   6  11  0   4  10   4 15  0
D53V6, multiclass
D53V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ACTL7B MUTATED             0       3        0        0        0         0
  ACTL7B WILD-TYPE           1      12        8       12       16         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ACTL7B MUTATED           0         0         1          0          0
  ACTL7B WILD-TYPE         7         4         6          5         16
                  vv
clus               STAGE IIIC STAGE IV
  ACTL7B MUTATED            0        0
  ACTL7B WILD-TYPE         19        3
D53V8, multiclass

Clustering(54) Variable = SPAG16 MUTATION ANALYSIS
D54V1, survival
                  sevent
clus2               0  1
  SPAG16 MUTATED    2  4
  SPAG16 WILD-TYPE 30 40
  SPAG16 MUTATED SPAG16 WILD-TYPE 
               6               70 
  SPAG16 MUTATED SPAG16 WILD-TYPE 
               4               40 
$`SPAG16 MUTATED`
TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29X TCGA-EE-A2A5 TCGA-FW-A3R5 TCGA-GN-A266 
       38.63         9.47         8.09         9.67         1.02        10.09 

$`SPAG16 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
        1.12        12.20         4.27        36.07         5.13        37.97 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
       11.15         4.41         1.08        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-ER-A19D 
        9.99        11.31        25.28        23.90         8.94         3.52 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 
       11.11         4.18        12.99        28.64        42.84        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        6.58         8.81        15.35        24.85        31.33        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  SPAG16 MUTATED SPAG16 WILD-TYPE 
            1.02             1.08 
  SPAG16 MUTATED SPAG16 WILD-TYPE 
           38.63            98.76 
  SPAG16 MUTATED SPAG16 WILD-TYPE 
            9.57            13.50 
[1] "1.0 - 38.6 (9.6)"  "1.1 - 98.8 (13.5)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
[1] "hr=" "2"  
D54V2, continuous
D54V3, binary
                  cls
clus                0  1
  SPAG16 MUTATED    3  9
  SPAG16 WILD-TYPE 29 96
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPAG16 MUTATED      3    9
  SPAG16 WILD-TYPE   29   96
                                                                                          clus
vv                                                                                         SPAG16 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              3
  REGIONAL LYMPH NODE                                                                                   9
                                                                                          clus
vv                                                                                         SPAG16 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               29
  REGIONAL LYMPH NODE                                                                                    96
D54V4, binary
                  cls
clus                0  1
  SPAG16 MUTATED    2 10
  SPAG16 WILD-TYPE 44 81
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPAG16 MUTATED      2   10
  SPAG16 WILD-TYPE   44   81
        clus
vv       SPAG16 MUTATED SPAG16 WILD-TYPE
  FEMALE              2               44
  MALE               10               81
                  vv
clus                M0  M1 M1A M1B M1C
  SPAG16 MUTATED    10   0   0   0   0
  SPAG16 WILD-TYPE 109   1   1   2   1
D54V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  SPAG16 MUTATED    7  0   1   1  1   0   0   0  0  0
  SPAG16 WILD-TYPE 64  2   5  10  0   4  10   4 15  1
D54V6, multiclass
D54V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SPAG16 MUTATED             0       1        0        2        2         0
  SPAG16 WILD-TYPE           1      14        8       10       14         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SPAG16 MUTATED           1         0         1          0          2
  SPAG16 WILD-TYPE         6         4         6          5         14
                  vv
clus               STAGE IIIC STAGE IV
  SPAG16 MUTATED            0        0
  SPAG16 WILD-TYPE         19        3
D54V8, multiclass

Clustering(55) Variable = PCDHB8 MUTATION ANALYSIS
D55V1, survival
                  sevent
clus2               0  1
  PCDHB8 MUTATED    5  5
  PCDHB8 WILD-TYPE 27 39
  PCDHB8 MUTATED PCDHB8 WILD-TYPE 
              10               66 
  PCDHB8 MUTATED PCDHB8 WILD-TYPE 
               5               39 
$`PCDHB8 MUTATED`
TCGA-D3-A3MV TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-EE-A183 TCGA-EE-A29D 
        5.39        48.79        51.12        13.68        12.20        11.15 
TCGA-EE-A29E TCGA-EE-A2A5 TCGA-FW-A3R5 TCGA-GN-A266 
       38.63         9.67         1.02        10.09 

$`PCDHB8 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       45.70        13.32        24.00         9.30         4.01         2.86 
TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 
       35.80        10.03        39.19         9.99        36.69        25.15 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       22.36         6.64        19.36         7.00        17.56        14.83 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       11.57         6.31         1.12         4.27        36.07         5.13 
TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       37.97         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         8.09        11.31        25.28        23.90 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 
       42.84        78.44         6.58         8.81        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        16.21        15.39        12.16        14.70 

  PCDHB8 MUTATED PCDHB8 WILD-TYPE 
            1.02             1.08 
  PCDHB8 MUTATED PCDHB8 WILD-TYPE 
           51.12            98.76 
  PCDHB8 MUTATED PCDHB8 WILD-TYPE 
          11.675           13.155 
[1] "1.0 - 51.1 (11.7)" "1.1 - 98.8 (13.2)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
  "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
  "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED"   "PCDHB8 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
  "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
  "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED"   "PCDHB8 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
  "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
  "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED"   "PCDHB8 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" "PCDHB8 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE"   "PCDHB8 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" "PCDHB8 WILD-TYPE" 
[1] "hr=" "1.2"
D55V2, continuous
D55V3, binary
                  cls
clus                0  1
  PCDHB8 MUTATED    6 17
  PCDHB8 WILD-TYPE 26 88
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB8 MUTATED      6   17
  PCDHB8 WILD-TYPE   26   88
                                                                                          clus
vv                                                                                         PCDHB8 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              6
  REGIONAL LYMPH NODE                                                                                  17
                                                                                          clus
vv                                                                                         PCDHB8 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               26
  REGIONAL LYMPH NODE                                                                                    88
D55V4, binary
                  cls
clus                0  1
  PCDHB8 MUTATED    5 18
  PCDHB8 WILD-TYPE 41 73
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB8 MUTATED      5   18
  PCDHB8 WILD-TYPE   41   73
        clus
vv       PCDHB8 MUTATED PCDHB8 WILD-TYPE
  FEMALE              5               41
  MALE               18               73
                  vv
clus                M0  M1 M1A M1B M1C
  PCDHB8 MUTATED    18   0   0   0   0
  PCDHB8 WILD-TYPE 101   1   1   2   1
D55V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PCDHB8 MUTATED   11  0   0   2  1   1   2   0  1  0
  PCDHB8 WILD-TYPE 60  2   6   9  0   3   8   4 14  1
D55V6, multiclass
D55V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PCDHB8 MUTATED             0       2        0        2        4         0
  PCDHB8 WILD-TYPE           1      13        8       10       12         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PCDHB8 MUTATED           3         0         1          0          3
  PCDHB8 WILD-TYPE         4         4         6          5         13
                  vv
clus               STAGE IIIC STAGE IV
  PCDHB8 MUTATED            3        0
  PCDHB8 WILD-TYPE         16        3
D55V8, multiclass

Clustering(56) Variable = HIST1H2AA MUTATION ANALYSIS
D56V1, survival
                     sevent
clus2                  0  1
  HIST1H2AA MUTATED    0  1
  HIST1H2AA WILD-TYPE 32 43
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  1                  75 
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  1                  43 
$`HIST1H2AA MUTATED`
TCGA-EE-A29D 
       11.15 

$`HIST1H2AA WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
        1.12        12.20         4.27        36.07         5.13        37.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       38.63         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 
       28.64        42.84        78.44         6.58         8.81         1.02 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       15.35        24.85        31.33        84.72        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
              11.15                1.02 
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
              11.15               98.76 
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
              11.15               12.99 
[1] "11.2 - 11.2 (11.2)" "1.0 - 98.8 (13.0)" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JK          TCGA-D3-A3C6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3CC          TCGA-D3-A3CE          TCGA-D3-A3CF 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3MO          TCGA-D3-A3MV          TCGA-D9-A3Z1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D9-A3Z3          TCGA-DA-A1HV          TCGA-DA-A1HW 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I7 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I8          TCGA-DA-A1IB          TCGA-DA-A1IC 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F2          TCGA-DA-A3F3          TCGA-DA-A3F5 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F8          TCGA-EE-A17X          TCGA-EE-A17Z 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A181          TCGA-EE-A183          TCGA-EE-A185 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A29C 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29D          TCGA-EE-A29E          TCGA-EE-A29H 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29L          TCGA-EE-A29N          TCGA-EE-A29P 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29X          TCGA-EE-A2A0          TCGA-EE-A2A1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A2          TCGA-EE-A2A5          TCGA-EE-A2A6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19M          TCGA-ER-A19N 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A1A1          TCGA-ER-A3ET          TCGA-FS-A1ZR 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FW-A3R5          TCGA-GN-A261          TCGA-GN-A262 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A264          TCGA-GN-A265          TCGA-GN-A266 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A267          TCGA-GN-A268          TCGA-GN-A26A 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A26D 
"HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JK          TCGA-D3-A3C6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3CC          TCGA-D3-A3CE          TCGA-D3-A3CF 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3MO          TCGA-D3-A3MV          TCGA-D9-A3Z1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D9-A3Z3          TCGA-DA-A1HV          TCGA-DA-A1HW 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I7 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I8          TCGA-DA-A1IB          TCGA-DA-A1IC 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F2          TCGA-DA-A3F3          TCGA-DA-A3F5 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F8          TCGA-EE-A17X          TCGA-EE-A17Z 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A181          TCGA-EE-A183          TCGA-EE-A185 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A29C 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29D          TCGA-EE-A29E          TCGA-EE-A29H 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29L          TCGA-EE-A29N          TCGA-EE-A29P 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29X          TCGA-EE-A2A0          TCGA-EE-A2A1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A2          TCGA-EE-A2A5          TCGA-EE-A2A6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19M          TCGA-ER-A19N 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A1A1          TCGA-ER-A3ET          TCGA-FS-A1ZR 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FW-A3R5          TCGA-GN-A261          TCGA-GN-A262 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A264          TCGA-GN-A265          TCGA-GN-A266 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A267          TCGA-GN-A268          TCGA-GN-A26A 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A26D 
"HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JK          TCGA-D3-A3C6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3CC          TCGA-D3-A3CE          TCGA-D3-A3CF 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3MO          TCGA-D3-A3MV          TCGA-D9-A3Z1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D9-A3Z3          TCGA-DA-A1HV          TCGA-DA-A1HW 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I7 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I8          TCGA-DA-A1IB          TCGA-DA-A1IC 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F2          TCGA-DA-A3F3          TCGA-DA-A3F5 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F8          TCGA-EE-A17X          TCGA-EE-A17Z 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A181          TCGA-EE-A183          TCGA-EE-A185 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A29C 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29D          TCGA-EE-A29E          TCGA-EE-A29H 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29L          TCGA-EE-A29N          TCGA-EE-A29P 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29X          TCGA-EE-A2A0          TCGA-EE-A2A1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A2          TCGA-EE-A2A5          TCGA-EE-A2A6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19M          TCGA-ER-A19N 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A1A1          TCGA-ER-A3ET          TCGA-FS-A1ZR 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FW-A3R5          TCGA-GN-A261          TCGA-GN-A262 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A264          TCGA-GN-A265          TCGA-GN-A266 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A267          TCGA-GN-A268          TCGA-GN-A26A 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A26D 
"HIST1H2AA WILD-TYPE" 
[1] "Remove cluster labels:" "HIST1H2AA MUTATED"     
clus
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  1                  75 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JK          TCGA-D3-A3C6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3CC          TCGA-D3-A3CE          TCGA-D3-A3CF 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3MO          TCGA-D3-A3MV          TCGA-D9-A3Z1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D9-A3Z3          TCGA-DA-A1HV          TCGA-DA-A1HW 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I7 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I8          TCGA-DA-A1IB          TCGA-DA-A1IC 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F2          TCGA-DA-A3F3          TCGA-DA-A3F5 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F8          TCGA-EE-A17X          TCGA-EE-A17Z 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A181          TCGA-EE-A183          TCGA-EE-A185 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A29C 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29E          TCGA-EE-A29H          TCGA-EE-A29L 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29N          TCGA-EE-A29P          TCGA-EE-A29Q 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29R          TCGA-EE-A29S          TCGA-EE-A29X 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-ER-A19D 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19F          TCGA-ER-A19J          TCGA-ER-A19L 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19M          TCGA-ER-A19N          TCGA-ER-A1A1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1ZR          TCGA-FW-A3R5 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A261          TCGA-GN-A262          TCGA-GN-A264 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A265          TCGA-GN-A266          TCGA-GN-A267 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A268          TCGA-GN-A26A          TCGA-GN-A26D 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
D56V2, continuous
D56V3, binary
                     cls
clus                    0   1
  HIST1H2AA MUTATED     0   5
  HIST1H2AA WILD-TYPE  32 100
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  HIST1H2AA MUTATED      0    5
  HIST1H2AA WILD-TYPE   32  100
                                                                                          clus
vv                                                                                         HIST1H2AA MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 0
  REGIONAL LYMPH NODE                                                                                      5
                                                                                          clus
vv                                                                                         HIST1H2AA WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                  32
  REGIONAL LYMPH NODE                                                                                      100
D56V4, binary
                     cls
clus                   0  1
  HIST1H2AA MUTATED    2  3
  HIST1H2AA WILD-TYPE 44 88
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  HIST1H2AA MUTATED      2    3
  HIST1H2AA WILD-TYPE   44   88
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  FEMALE                 2                  44
  MALE                   3                  88
                     vv
clus                   M0  M1 M1A M1B M1C
  HIST1H2AA MUTATED     5   0   0   0   0
  HIST1H2AA WILD-TYPE 114   1   1   2   1
D56V5, multiclass
                     vv
clus                  N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  HIST1H2AA MUTATED    4  0   0   1  0   0   0   0  0  0
  HIST1H2AA WILD-TYPE 67  2   6  10  1   4  10   4 15  1
D56V6, multiclass
D56V7, continuous
                     vv
clus                  I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  HIST1H2AA MUTATED             0       1        1        1        1         0
  HIST1H2AA WILD-TYPE           1      14        7       11       15         6
                     vv
clus                  STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  HIST1H2AA MUTATED           0         0         0          0          0
  HIST1H2AA WILD-TYPE         7         4         7          5         16
                     vv
clus                  STAGE IIIC STAGE IV
  HIST1H2AA MUTATED            1        0
  HIST1H2AA WILD-TYPE         18        3
D56V8, multiclass

Clustering(57) Variable = OR10K2 MUTATION ANALYSIS
D57V1, survival
                  sevent
clus2               0  1
  OR10K2 MUTATED    5  1
  OR10K2 WILD-TYPE 27 43
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               6               70 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               1               43 
$`OR10K2 MUTATED`
TCGA-DA-A1HV TCGA-EE-A29E TCGA-EE-A29S TCGA-ER-A19N TCGA-FW-A3R5 TCGA-GN-A266 
       48.79        38.63         9.99        42.84         1.02        10.09 

$`OR10K2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
        7.00        17.56        14.83        11.57         6.31         1.12 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D 
       12.20         4.27        36.07         5.13        37.97        11.15 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41         1.08         9.47        12.03         8.12         8.84 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A1A1 
        3.52        11.11         4.18        12.99        28.64        78.44 
TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
        6.58         8.81        15.35        24.85        31.33        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  OR10K2 MUTATED OR10K2 WILD-TYPE 
            1.02             1.08 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
           48.79            98.76 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
          24.360           12.595 
[1] "1.0 - 48.8 (24.4)" "1.1 - 98.8 (12.6)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
[1] "hr=" "4.6"
D57V2, continuous
D57V3, binary
                  cls
clus                0  1
  OR10K2 MUTATED    4 10
  OR10K2 WILD-TYPE 28 95
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10K2 MUTATED      4   10
  OR10K2 WILD-TYPE   28   95
                                                                                          clus
vv                                                                                         OR10K2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              4
  REGIONAL LYMPH NODE                                                                                  10
                                                                                          clus
vv                                                                                         OR10K2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               28
  REGIONAL LYMPH NODE                                                                                    95
D57V4, binary
                  cls
clus                0  1
  OR10K2 MUTATED    2 12
  OR10K2 WILD-TYPE 44 79
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10K2 MUTATED      2   12
  OR10K2 WILD-TYPE   44   79
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  FEMALE              2               44
  MALE               12               79
                  vv
clus                M0  M1 M1A M1B M1C
  OR10K2 MUTATED    12   0   0   0   0
  OR10K2 WILD-TYPE 107   1   1   2   1
D57V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OR10K2 MUTATED    8  0   1   1  1   0   1   0  0  0
  OR10K2 WILD-TYPE 63  2   5  10  0   4   9   4 15  1
D57V6, multiclass
D57V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR10K2 MUTATED             0       1        2        0        3         1
  OR10K2 WILD-TYPE           1      14        6       12       13         5
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR10K2 MUTATED           1         0         1          0          3
  OR10K2 WILD-TYPE         6         4         6          5         13
                  vv
clus               STAGE IIIC STAGE IV
  OR10K2 MUTATED            0        0
  OR10K2 WILD-TYPE         19        3
D57V8, multiclass

Clustering(58) Variable = PHGDH MUTATION ANALYSIS
D58V1, survival
                 sevent
clus2              0  1
  PHGDH MUTATED    2  3
  PHGDH WILD-TYPE 30 41
  PHGDH MUTATED PHGDH WILD-TYPE 
              5              71 
  PHGDH MUTATED PHGDH WILD-TYPE 
              3              41 
$`PHGDH MUTATED`
TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-ER-A19F TCGA-FW-A3R5 TCGA-GN-A265 
       10.26        11.41        11.11         1.02        84.72 

$`PHGDH WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
        8.38        21.14         6.35        15.25        45.70        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       24.00         9.30         5.39         4.01         2.86        48.79 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       35.80        51.12        10.03        39.19        13.68         9.99 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
       17.56        14.83        11.57         6.31         1.12        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        4.27        36.07         5.13        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41         1.08         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        9.99         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        8.94         3.52         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       78.44         6.58         8.81        15.35        24.85        31.33 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        16.21        15.39        12.16        14.70 

  PHGDH MUTATED PHGDH WILD-TYPE 
           1.02            1.08 
  PHGDH MUTATED PHGDH WILD-TYPE 
          84.72           98.76 
  PHGDH MUTATED PHGDH WILD-TYPE 
          11.11           13.32 
[1] "1.0 - 84.7 (11.1)" "1.1 - 98.8 (13.3)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
[1] "hr=" "1.2"
D58V2, continuous
D58V3, binary
                 cls
clus               0  1
  PHGDH MUTATED    1  7
  PHGDH WILD-TYPE 31 98
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PHGDH MUTATED      1    7
  PHGDH WILD-TYPE   31   98
                                                                                          clus
vv                                                                                         PHGDH MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  7
                                                                                          clus
vv                                                                                         PHGDH WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   98
D58V4, binary
                 cls
clus               0  1
  PHGDH MUTATED    0  8
  PHGDH WILD-TYPE 46 83
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PHGDH MUTATED      0    8
  PHGDH WILD-TYPE   46   83
        clus
vv       PHGDH MUTATED PHGDH WILD-TYPE
  FEMALE             0              46
  MALE               8              83
                 vv
clus               M0  M1 M1A M1B M1C
  PHGDH MUTATED     6   0   0   0   0
  PHGDH WILD-TYPE 113   1   1   2   1
D58V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PHGDH MUTATED    4  0   0   1  1   0   0   0  0  0
  PHGDH WILD-TYPE 67  2   6  10  0   4  10   4 15  1
D58V6, multiclass
D58V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PHGDH MUTATED             0       0        0        0        0         1
  PHGDH WILD-TYPE           1      15        8       12       16         5
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PHGDH MUTATED           2         0         1          0          0
  PHGDH WILD-TYPE         5         4         6          5         16
                 vv
clus              STAGE IIIC STAGE IV
  PHGDH MUTATED            1        0
  PHGDH WILD-TYPE         18        3
D58V8, multiclass

Clustering(59) Variable = OR9K2 MUTATION ANALYSIS
D59V1, survival
                 sevent
clus2              0  1
  OR9K2 MUTATED    4  4
  OR9K2 WILD-TYPE 28 40
  OR9K2 MUTATED OR9K2 WILD-TYPE 
              8              68 
  OR9K2 MUTATED OR9K2 WILD-TYPE 
              4              40 
$`OR9K2 MUTATED`
TCGA-DA-A1I2 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A29E TCGA-ER-A1A1 
       13.68        14.83        11.57         1.12        38.63        78.44 
TCGA-FW-A3R5 TCGA-GN-A268 
        1.02        15.39 

$`OR9K2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        7.00        17.56         6.31        12.20         4.27        36.07 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
        5.13        37.97        11.15         4.41         1.08         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 
       12.03         8.12         8.84         9.99         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A3ET TCGA-FS-A1ZR 
        4.18        12.99        28.64        42.84         6.58         8.81 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       15.35        24.85        31.33        84.72        10.09        16.21 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  OR9K2 MUTATED OR9K2 WILD-TYPE 
           1.02            1.08 
  OR9K2 MUTATED OR9K2 WILD-TYPE 
          78.44           98.76 
  OR9K2 MUTATED OR9K2 WILD-TYPE 
         14.255          12.180 
[1] "1.0 - 78.4 (14.3)" "1.1 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
  "OR9K2 MUTATED" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OR9K2 WILD-TYPE"   "OR9K2 MUTATED"   "OR9K2 MUTATED" "OR9K2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "OR9K2 MUTATED" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE"   "OR9K2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE"   "OR9K2 MUTATED" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE"   "OR9K2 MUTATED" "OR9K2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OR9K2 WILD-TYPE"   "OR9K2 MUTATED" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
  "OR9K2 MUTATED" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OR9K2 WILD-TYPE"   "OR9K2 MUTATED"   "OR9K2 MUTATED" "OR9K2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "OR9K2 MUTATED" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE"   "OR9K2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE"   "OR9K2 MUTATED" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE"   "OR9K2 MUTATED" "OR9K2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OR9K2 WILD-TYPE"   "OR9K2 MUTATED" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
  "OR9K2 MUTATED" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OR9K2 WILD-TYPE"   "OR9K2 MUTATED"   "OR9K2 MUTATED" "OR9K2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "OR9K2 MUTATED" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE"   "OR9K2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE"   "OR9K2 MUTATED" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE"   "OR9K2 MUTATED" "OR9K2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OR9K2 WILD-TYPE"   "OR9K2 MUTATED" "OR9K2 WILD-TYPE" "OR9K2 WILD-TYPE" 
[1] "hr=" "1.3"
D59V2, continuous
D59V3, binary
                 cls
clus               0  1
  OR9K2 MUTATED    0 11
  OR9K2 WILD-TYPE 32 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR9K2 MUTATED      0   11
  OR9K2 WILD-TYPE   32   94
                                                                                          clus
vv                                                                                         OR9K2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                 11
                                                                                          clus
vv                                                                                         OR9K2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                   94
D59V4, binary
                 cls
clus               0  1
  OR9K2 MUTATED    2  9
  OR9K2 WILD-TYPE 44 82
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR9K2 MUTATED      2    9
  OR9K2 WILD-TYPE   44   82
        clus
vv       OR9K2 MUTATED OR9K2 WILD-TYPE
  FEMALE             2              44
  MALE               9              82
                 vv
clus               M0  M1 M1A M1B M1C
  OR9K2 MUTATED    11   0   0   0   0
  OR9K2 WILD-TYPE 108   1   1   2   1
D59V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OR9K2 MUTATED    5  0   0   1  1   1   2   0  1  0
  OR9K2 WILD-TYPE 66  2   6  10  0   3   8   4 14  1
D59V6, multiclass
D59V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR9K2 MUTATED             0       0        1        0        2         0
  OR9K2 WILD-TYPE           1      15        7       12       14         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR9K2 MUTATED           2         0         1          0          2
  OR9K2 WILD-TYPE         5         4         6          5         14
                 vv
clus              STAGE IIIC STAGE IV
  OR9K2 MUTATED            2        0
  OR9K2 WILD-TYPE         17        3
D59V8, multiclass

Clustering(60) Variable = LIN7A MUTATION ANALYSIS
D60V1, survival
                 sevent
clus2              0  1
  LIN7A MUTATED    1  3
  LIN7A WILD-TYPE 31 41
  LIN7A MUTATED LIN7A WILD-TYPE 
              4              72 
  LIN7A MUTATED LIN7A WILD-TYPE 
              3              41 
$`LIN7A MUTATED`
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A29L TCGA-FW-A3R5 
        1.12        12.20         1.08         1.02 

$`LIN7A WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        4.27        36.07         5.13        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        4.41         9.47        12.03         8.12         8.84         9.99 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       78.44         6.58         8.81        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        16.21        15.39        12.16        14.70 

  LIN7A MUTATED LIN7A WILD-TYPE 
           1.02            2.86 
  LIN7A MUTATED LIN7A WILD-TYPE 
          12.20           98.76 
  LIN7A MUTATED LIN7A WILD-TYPE 
            1.1            13.5 
[1] "1.0 - 12.2 (1.1)"  "2.9 - 98.8 (13.5)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "LIN7A MUTATED"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "LIN7A MUTATED"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "LIN7A MUTATED"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
[1] "hr=" "6.3"
D60V2, continuous
D60V3, binary
                 cls
clus               0  1
  LIN7A MUTATED    0  8
  LIN7A WILD-TYPE 32 97
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LIN7A MUTATED      0    8
  LIN7A WILD-TYPE   32   97
                                                                                          clus
vv                                                                                         LIN7A MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                  8
                                                                                          clus
vv                                                                                         LIN7A WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                   97
D60V4, binary
                 cls
clus               0  1
  LIN7A MUTATED    2  6
  LIN7A WILD-TYPE 44 85
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LIN7A MUTATED      2    6
  LIN7A WILD-TYPE   44   85
        clus
vv       LIN7A MUTATED LIN7A WILD-TYPE
  FEMALE             2              44
  MALE               6              85
                 vv
clus               M0  M1 M1A M1B M1C
  LIN7A MUTATED     6   0   0   0   0
  LIN7A WILD-TYPE 113   1   1   2   1
D60V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  LIN7A MUTATED    4  0   0   0  1   0   0   0  1  0
  LIN7A WILD-TYPE 67  2   6  11  0   4  10   4 14  1
D60V6, multiclass
D60V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  LIN7A MUTATED             0       1        1        0        2         0
  LIN7A WILD-TYPE           1      14        7       12       14         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  LIN7A MUTATED           0         0         1          0          0
  LIN7A WILD-TYPE         7         4         6          5         16
                 vv
clus              STAGE IIIC STAGE IV
  LIN7A MUTATED            1        0
  LIN7A WILD-TYPE         18        3
D60V8, multiclass

Clustering(61) Variable = USP17L2 MUTATION ANALYSIS
D61V1, survival
                   sevent
clus2                0  1
  USP17L2 MUTATED    3  4
  USP17L2 WILD-TYPE 29 40
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                7                69 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                4                40 
$`USP17L2 MUTATED`
TCGA-D3-A1Q6 TCGA-DA-A1I4 TCGA-EE-A181 TCGA-EE-A20B TCGA-EE-A2A2 TCGA-FW-A3R5 
       70.16         9.99         1.12        36.07        23.90         1.02 
TCGA-GN-A266 
       10.09 

$`USP17L2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        98.76        28.08        22.55        10.26 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
        8.38        21.14        11.41         6.35        15.25        45.70 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.79        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 
       17.56        14.83        11.57         6.31        12.20         4.27 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        5.13        37.97        11.15        38.63         4.41         1.08 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X 
        9.47        12.03         8.12         8.84         9.99         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       11.31        25.28         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
        8.81        15.35        24.85        31.33        84.72        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  USP17L2 MUTATED USP17L2 WILD-TYPE 
             1.02              1.08 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
            70.16             98.76 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
            10.09             12.99 
[1] "1.0 - 70.2 (10.1)" "1.1 - 98.8 (13.0)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JK        TCGA-D3-A3C6 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF        TCGA-D3-A3MO 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I7        TCGA-DA-A1I8 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A181        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-EE-A20F        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29N        TCGA-EE-A29P 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29X 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3R5        TCGA-GN-A261 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265        TCGA-GN-A266 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JK        TCGA-D3-A3C6 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF        TCGA-D3-A3MO 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I7        TCGA-DA-A1I8 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A181        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-EE-A20F        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29N        TCGA-EE-A29P 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29X 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3R5        TCGA-GN-A261 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265        TCGA-GN-A266 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JK        TCGA-D3-A3C6 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF        TCGA-D3-A3MO 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I7        TCGA-DA-A1I8 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A181        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-EE-A20F        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29N        TCGA-EE-A29P 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29X 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3R5        TCGA-GN-A261 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265        TCGA-GN-A266 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
[1] "hr=" "1"  
D61V2, continuous
D61V3, binary
                   cls
clus                 0  1
  USP17L2 MUTATED    5  8
  USP17L2 WILD-TYPE 27 97
[1] "tbl2"
                   cls
clus                [,1] [,2]
  USP17L2 MUTATED      5    8
  USP17L2 WILD-TYPE   27   97
                                                                                          clus
vv                                                                                         USP17L2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               5
  REGIONAL LYMPH NODE                                                                                    8
                                                                                          clus
vv                                                                                         USP17L2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                27
  REGIONAL LYMPH NODE                                                                                     97
D61V4, binary
                   cls
clus                 0  1
  USP17L2 MUTATED    2 11
  USP17L2 WILD-TYPE 44 80
[1] "tbl2"
                   cls
clus                [,1] [,2]
  USP17L2 MUTATED      2   11
  USP17L2 WILD-TYPE   44   80
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  FEMALE               2                44
  MALE                11                80
                   vv
clus                 M0  M1 M1A M1B M1C
  USP17L2 MUTATED    12   0   0   0   0
  USP17L2 WILD-TYPE 107   1   1   2   1
D61V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  USP17L2 MUTATED    8  0   0   2  1   0   1   0  0  0
  USP17L2 WILD-TYPE 63  2   6   9  0   4   9   4 15  1
D61V6, multiclass
D61V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  USP17L2 MUTATED             0       1        2        0        4         1
  USP17L2 WILD-TYPE           1      14        6       12       12         5
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  USP17L2 MUTATED           0         0         2          0          2
  USP17L2 WILD-TYPE         7         4         5          5         14
                   vv
clus                STAGE IIIC STAGE IV
  USP17L2 MUTATED            0        0
  USP17L2 WILD-TYPE         19        3
D61V8, multiclass

Clustering(62) Variable = ANKRD20A4 MUTATION ANALYSIS
D62V1, survival
                     sevent
clus2                  0  1
  ANKRD20A4 MUTATED    3  0
  ANKRD20A4 WILD-TYPE 29 44
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  3                  73 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  0                  44 
$`ANKRD20A4 MUTATED`
TCGA-EE-A20F TCGA-EE-A29E TCGA-FW-A3R5 
        5.13        38.63         1.02 

$`ANKRD20A4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A29C TCGA-EE-A29D 
        1.12        12.20         4.27        36.07        37.97        11.15 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41         1.08         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        9.99         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 
       42.84        78.44         6.58         8.81        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       31.33        84.72        10.09        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
               1.02                1.08 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
              38.63               98.76 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
               5.13               12.99 
[1] "1.0 - 38.6 (5.1)"  "1.1 - 98.8 (13.0)"
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JK          TCGA-D3-A3C6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3CC          TCGA-D3-A3CE          TCGA-D3-A3CF 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3MO          TCGA-D3-A3MV          TCGA-D9-A3Z1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D9-A3Z3          TCGA-DA-A1HV          TCGA-DA-A1HW 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I7 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I8          TCGA-DA-A1IB          TCGA-DA-A1IC 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F2          TCGA-DA-A3F3          TCGA-DA-A3F5 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F8          TCGA-EE-A17X          TCGA-EE-A17Z 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A181          TCGA-EE-A183          TCGA-EE-A185 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A29C 
"ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29D          TCGA-EE-A29E          TCGA-EE-A29H 
"ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29L          TCGA-EE-A29N          TCGA-EE-A29P 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29X          TCGA-EE-A2A0          TCGA-EE-A2A1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A2          TCGA-EE-A2A5          TCGA-EE-A2A6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19M          TCGA-ER-A19N 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A1A1          TCGA-ER-A3ET          TCGA-FS-A1ZR 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FW-A3R5          TCGA-GN-A261          TCGA-GN-A262 
  "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A264          TCGA-GN-A265          TCGA-GN-A266 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A267          TCGA-GN-A268          TCGA-GN-A26A 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A26D 
"ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JK          TCGA-D3-A3C6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3CC          TCGA-D3-A3CE          TCGA-D3-A3CF 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3MO          TCGA-D3-A3MV          TCGA-D9-A3Z1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D9-A3Z3          TCGA-DA-A1HV          TCGA-DA-A1HW 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I7 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I8          TCGA-DA-A1IB          TCGA-DA-A1IC 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F2          TCGA-DA-A3F3          TCGA-DA-A3F5 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F8          TCGA-EE-A17X          TCGA-EE-A17Z 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A181          TCGA-EE-A183          TCGA-EE-A185 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A29C 
"ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29D          TCGA-EE-A29E          TCGA-EE-A29H 
"ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29L          TCGA-EE-A29N          TCGA-EE-A29P 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29X          TCGA-EE-A2A0          TCGA-EE-A2A1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A2          TCGA-EE-A2A5          TCGA-EE-A2A6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19M          TCGA-ER-A19N 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A1A1          TCGA-ER-A3ET          TCGA-FS-A1ZR 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FW-A3R5          TCGA-GN-A261          TCGA-GN-A262 
  "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A264          TCGA-GN-A265          TCGA-GN-A266 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A267          TCGA-GN-A268          TCGA-GN-A26A 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A26D 
"ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JK          TCGA-D3-A3C6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3CC          TCGA-D3-A3CE          TCGA-D3-A3CF 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3MO          TCGA-D3-A3MV          TCGA-D9-A3Z1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D9-A3Z3          TCGA-DA-A1HV          TCGA-DA-A1HW 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I7 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I8          TCGA-DA-A1IB          TCGA-DA-A1IC 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F2          TCGA-DA-A3F3          TCGA-DA-A3F5 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F8          TCGA-EE-A17X          TCGA-EE-A17Z 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A181          TCGA-EE-A183          TCGA-EE-A185 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A29C 
"ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29D          TCGA-EE-A29E          TCGA-EE-A29H 
"ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29L          TCGA-EE-A29N          TCGA-EE-A29P 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29X          TCGA-EE-A2A0          TCGA-EE-A2A1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A2          TCGA-EE-A2A5          TCGA-EE-A2A6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19M          TCGA-ER-A19N 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A1A1          TCGA-ER-A3ET          TCGA-FS-A1ZR 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FW-A3R5          TCGA-GN-A261          TCGA-GN-A262 
  "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A264          TCGA-GN-A265          TCGA-GN-A266 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A267          TCGA-GN-A268          TCGA-GN-A26A 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A26D 
"ANKRD20A4 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D62V2, continuous
D62V3, binary
                     cls
clus                    0   1
  ANKRD20A4 MUTATED     0   4
  ANKRD20A4 WILD-TYPE  32 101
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  ANKRD20A4 MUTATED      0    4
  ANKRD20A4 WILD-TYPE   32  101
                                                                                          clus
vv                                                                                         ANKRD20A4 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 0
  REGIONAL LYMPH NODE                                                                                      4
                                                                                          clus
vv                                                                                         ANKRD20A4 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                  32
  REGIONAL LYMPH NODE                                                                                      101
D62V4, binary
                     cls
clus                   0  1
  ANKRD20A4 MUTATED    0  4
  ANKRD20A4 WILD-TYPE 46 87
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  ANKRD20A4 MUTATED      0    4
  ANKRD20A4 WILD-TYPE   46   87
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  FEMALE                 0                  46
  MALE                   4                  87
                     vv
clus                   M0  M1 M1A M1B M1C
  ANKRD20A4 MUTATED     4   0   0   0   0
  ANKRD20A4 WILD-TYPE 115   1   1   2   1
D62V5, multiclass
                     vv
clus                  N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  ANKRD20A4 MUTATED    2  0   0   1  1   0   0   0  0  0
  ANKRD20A4 WILD-TYPE 69  2   6  10  0   4  10   4 15  1
D62V6, multiclass
D62V7, continuous
                     vv
clus                  I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ANKRD20A4 MUTATED             0       0        0        0        2         0
  ANKRD20A4 WILD-TYPE           1      15        8       12       14         6
                     vv
clus                  STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ANKRD20A4 MUTATED           0         0         1          0          1
  ANKRD20A4 WILD-TYPE         7         4         6          5         15
                     vv
clus                  STAGE IIIC STAGE IV
  ANKRD20A4 MUTATED            0        0
  ANKRD20A4 WILD-TYPE         19        3
D62V8, multiclass

Clustering(63) Variable = CYLC2 MUTATION ANALYSIS
D63V1, survival
                 sevent
clus2              0  1
  CYLC2 MUTATED    4  2
  CYLC2 WILD-TYPE 28 42
  CYLC2 MUTATED CYLC2 WILD-TYPE 
              6              70 
  CYLC2 MUTATED CYLC2 WILD-TYPE 
              2              42 
$`CYLC2 MUTATED`
TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I7 TCGA-EE-A29D TCGA-EE-A2A2 TCGA-FW-A3R5 
       35.80        39.19        36.69        11.15        23.90         1.02 

$`CYLC2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 
        2.86        48.79        51.12        10.03        13.68         9.99 
TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       25.15        22.36         6.64        19.36         7.00        17.56 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 
       14.83        11.57         6.31         1.12        12.20         4.27 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       36.07         5.13        37.97        38.63         4.41         1.08 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X 
        9.47        12.03         8.12         8.84         9.99         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       11.31        25.28         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        8.81        15.35        24.85        31.33        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       16.21        15.39        12.16        14.70 

  CYLC2 MUTATED CYLC2 WILD-TYPE 
           1.02            1.08 
  CYLC2 MUTATED CYLC2 WILD-TYPE 
          39.19           98.76 
  CYLC2 MUTATED CYLC2 WILD-TYPE 
          29.85           12.18 
[1] "1.0 - 39.2 (29.8)" "1.1 - 98.8 (12.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
  "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
  "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
  "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
[1] "hr=" "2.6"
D63V2, continuous
D63V3, binary
                 cls
clus               0  1
  CYLC2 MUTATED    2 12
  CYLC2 WILD-TYPE 30 93
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYLC2 MUTATED      2   12
  CYLC2 WILD-TYPE   30   93
                                                                                          clus
vv                                                                                         CYLC2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                 12
                                                                                          clus
vv                                                                                         CYLC2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   93
D63V4, binary
                 cls
clus               0  1
  CYLC2 MUTATED    2 12
  CYLC2 WILD-TYPE 44 79
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYLC2 MUTATED      2   12
  CYLC2 WILD-TYPE   44   79
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  FEMALE             2              44
  MALE              12              79
                 vv
clus               M0  M1 M1A M1B M1C
  CYLC2 MUTATED    12   0   0   0   0
  CYLC2 WILD-TYPE 107   1   1   2   1
D63V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CYLC2 MUTATED    4  0   1   3  1   1   1   0  1  0
  CYLC2 WILD-TYPE 67  2   5   8  0   3   9   4 14  1
D63V6, multiclass
D63V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CYLC2 MUTATED             0       1        0        0        1         1
  CYLC2 WILD-TYPE           1      14        8       12       15         5
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CYLC2 MUTATED           1         0         1          1          4
  CYLC2 WILD-TYPE         6         4         6          4         12
                 vv
clus              STAGE IIIC STAGE IV
  CYLC2 MUTATED            2        0
  CYLC2 WILD-TYPE         17        3
D63V8, multiclass

Clustering(64) Variable = VGLL1 MUTATION ANALYSIS
D64V1, survival
                 sevent
clus2              0  1
  VGLL1 MUTATED    2  1
  VGLL1 WILD-TYPE 30 43
  VGLL1 MUTATED VGLL1 WILD-TYPE 
              3              73 
  VGLL1 MUTATED VGLL1 WILD-TYPE 
              1              43 
$`VGLL1 MUTATED`
TCGA-ER-A1A1 TCGA-FW-A3R5 TCGA-GN-A266 
       78.44         1.02        10.09 

$`VGLL1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
        1.12        12.20         4.27        36.07         5.13        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
       11.15        38.63         4.41         1.08         9.47        12.03 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
        8.12         8.84         9.99         8.09        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 
       12.99        28.64        42.84         6.58         8.81        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       24.85        31.33        84.72        16.21        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  VGLL1 MUTATED VGLL1 WILD-TYPE 
           1.02            1.08 
  VGLL1 MUTATED VGLL1 WILD-TYPE 
          78.44           98.76 
  VGLL1 MUTATED VGLL1 WILD-TYPE 
          10.09           12.99 
[1] "1.0 - 78.4 (10.1)" "1.1 - 98.8 (13.0)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE"   "VGLL1 MUTATED" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE"   "VGLL1 MUTATED" "VGLL1 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE"   "VGLL1 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE"   "VGLL1 MUTATED" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE"   "VGLL1 MUTATED" "VGLL1 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE"   "VGLL1 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE"   "VGLL1 MUTATED" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE"   "VGLL1 MUTATED" "VGLL1 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE"   "VGLL1 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" "VGLL1 WILD-TYPE" 
[1] "hr=" "1.8"
D64V2, continuous
D64V3, binary
                 cls
clus                0   1
  VGLL1 MUTATED     2   3
  VGLL1 WILD-TYPE  30 102
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VGLL1 MUTATED      2    3
  VGLL1 WILD-TYPE   30  102
                                                                                          clus
vv                                                                                         VGLL1 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  3
                                                                                          clus
vv                                                                                         VGLL1 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                  102
D64V4, binary
                 cls
clus               0  1
  VGLL1 MUTATED    0  5
  VGLL1 WILD-TYPE 46 86
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VGLL1 MUTATED      0    5
  VGLL1 WILD-TYPE   46   86
        clus
vv       VGLL1 MUTATED VGLL1 WILD-TYPE
  FEMALE             0              46
  MALE               5              86
                 vv
clus               M0  M1 M1A M1B M1C
  VGLL1 MUTATED     4   0   0   0   0
  VGLL1 WILD-TYPE 115   1   1   2   1
D64V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  VGLL1 MUTATED    1  0   1   0  1   0   0   0  1  0
  VGLL1 WILD-TYPE 70  2   5  11  0   4  10   4 14  1
D64V6, multiclass
D64V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  VGLL1 MUTATED             0       0        0        0        1         0
  VGLL1 WILD-TYPE           1      15        8       12       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  VGLL1 MUTATED           0         0         1          0          1
  VGLL1 WILD-TYPE         7         4         6          5         15
                 vv
clus              STAGE IIIC STAGE IV
  VGLL1 MUTATED            1        0
  VGLL1 WILD-TYPE         18        3
D64V8, multiclass

Clustering(65) Variable = DEFB110 MUTATION ANALYSIS
D65V1, survival
                   sevent
clus2                0  1
  DEFB110 MUTATED    1  2
  DEFB110 WILD-TYPE 31 42
  DEFB110 MUTATED DEFB110 WILD-TYPE 
                3                73 
  DEFB110 MUTATED DEFB110 WILD-TYPE 
                2                42 
$`DEFB110 MUTATED`
TCGA-EE-A29D TCGA-FW-A3R5 TCGA-GN-A267 
       11.15         1.02        16.21 

$`DEFB110 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C 
        1.12        12.20         4.27        36.07         5.13        37.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       38.63         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 
       28.64        42.84        78.44         6.58         8.81        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A26A 
       24.85        31.33        84.72        10.09        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  DEFB110 MUTATED DEFB110 WILD-TYPE 
             1.02              1.08 
  DEFB110 MUTATED DEFB110 WILD-TYPE 
            16.21             98.76 
  DEFB110 MUTATED DEFB110 WILD-TYPE 
            11.15             12.99 
[1] "1.0 - 16.2 (11.2)" "1.1 - 98.8 (13.0)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JK        TCGA-D3-A3C6 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF        TCGA-D3-A3MO 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A181        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE"   "DEFB110 MUTATED" "DEFB110 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29N        TCGA-EE-A29P 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29X 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3R5        TCGA-GN-A261 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE"   "DEFB110 MUTATED" "DEFB110 WILD-TYPE" 
       TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265        TCGA-GN-A266 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
  "DEFB110 MUTATED" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JK        TCGA-D3-A3C6 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF        TCGA-D3-A3MO 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A181        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE"   "DEFB110 MUTATED" "DEFB110 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29N        TCGA-EE-A29P 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29X 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3R5        TCGA-GN-A261 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE"   "DEFB110 MUTATED" "DEFB110 WILD-TYPE" 
       TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265        TCGA-GN-A266 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
  "DEFB110 MUTATED" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JK        TCGA-D3-A3C6 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF        TCGA-D3-A3MO 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-D3-A3MV        TCGA-D9-A3Z1        TCGA-D9-A3Z3        TCGA-DA-A1HV 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-DA-A1HW        TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-DA-A1I2        TCGA-DA-A1I4        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2        TCGA-DA-A3F3 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X        TCGA-EE-A17Z 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A181        TCGA-EE-A183        TCGA-EE-A185        TCGA-EE-A20B 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A20F        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE"   "DEFB110 MUTATED" "DEFB110 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29N        TCGA-EE-A29P 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29X 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-ER-A19D        TCGA-ER-A19F        TCGA-ER-A19J 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-ER-A19L        TCGA-ER-A19M        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1ZR        TCGA-FW-A3R5        TCGA-GN-A261 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE"   "DEFB110 MUTATED" "DEFB110 WILD-TYPE" 
       TCGA-GN-A262        TCGA-GN-A264        TCGA-GN-A265        TCGA-GN-A266 
"DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
  "DEFB110 MUTATED" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" "DEFB110 WILD-TYPE" 
[1] "hr=" "1.9"
D65V2, continuous
D65V3, binary
                   cls
clus                  0   1
  DEFB110 MUTATED     0   5
  DEFB110 WILD-TYPE  32 100
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB110 MUTATED      0    5
  DEFB110 WILD-TYPE   32  100
                                                                                          clus
vv                                                                                         DEFB110 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               0
  REGIONAL LYMPH NODE                                                                                    5
                                                                                          clus
vv                                                                                         DEFB110 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                32
  REGIONAL LYMPH NODE                                                                                    100
D65V4, binary
                   cls
clus                 0  1
  DEFB110 MUTATED    0  5
  DEFB110 WILD-TYPE 46 86
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB110 MUTATED      0    5
  DEFB110 WILD-TYPE   46   86
        clus
vv       DEFB110 MUTATED DEFB110 WILD-TYPE
  FEMALE               0                46
  MALE                 5                86
                   vv
clus                 M0  M1 M1A M1B M1C
  DEFB110 MUTATED     5   0   0   0   0
  DEFB110 WILD-TYPE 114   1   1   2   1
D65V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  DEFB110 MUTATED    2  0   1   1  1   0   0   0  0  0
  DEFB110 WILD-TYPE 69  2   5  10  0   4  10   4 15  1
D65V6, multiclass
D65V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEFB110 MUTATED             0       1        1        0        0         0
  DEFB110 WILD-TYPE           1      14        7       12       16         6
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DEFB110 MUTATED           0         0         1          1          0
  DEFB110 WILD-TYPE         7         4         6          4         16
                   vv
clus                STAGE IIIC STAGE IV
  DEFB110 MUTATED            1        0
  DEFB110 WILD-TYPE         18        3
D65V8, multiclass

Clustering(66) Variable = LCE1B MUTATION ANALYSIS
D66V1, survival
                 sevent
clus2              0  1
  LCE1B MUTATED    0  2
  LCE1B WILD-TYPE 32 42
  LCE1B MUTATED LCE1B WILD-TYPE 
              2              74 
  LCE1B MUTATED LCE1B WILD-TYPE 
              2              42 
$`LCE1B MUTATED`
TCGA-EE-A185 TCGA-GN-A266 
        4.27        10.09 

$`LCE1B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D 
        1.12        12.20        36.07         5.13        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       38.63         4.41         1.08         9.47        12.03         8.12 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        8.84         9.99         8.09        11.31        25.28        23.90 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
        9.67         8.94         3.52        11.11         4.18        12.99 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 
       28.64        42.84        78.44         6.58         8.81         1.02 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       15.35        24.85        31.33        84.72        16.21        15.39 
TCGA-GN-A26A TCGA-GN-A26D 
       12.16        14.70 

  LCE1B MUTATED LCE1B WILD-TYPE 
           4.27            1.02 
  LCE1B MUTATED LCE1B WILD-TYPE 
          10.09           98.76 
  LCE1B MUTATED LCE1B WILD-TYPE 
          7.180          13.155 
[1] "4.3 - 10.1 (7.2)"  "1.0 - 98.8 (13.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
[1] "Remove cluster labels:" "LCE1B MUTATED"         
clus
  LCE1B MUTATED LCE1B WILD-TYPE 
              2              74 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A20B      TCGA-EE-A20F 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E      TCGA-EE-A29H 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29Q 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X      TCGA-EE-A2A0 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J      TCGA-ER-A19L 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1      TCGA-ER-A3ET 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261      TCGA-GN-A262 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A267      TCGA-GN-A268 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
D66V2, continuous
D66V3, binary
                 cls
clus                0   1
  LCE1B MUTATED     2   5
  LCE1B WILD-TYPE  30 100
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LCE1B MUTATED      2    5
  LCE1B WILD-TYPE   30  100
                                                                                          clus
vv                                                                                         LCE1B MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  5
                                                                                          clus
vv                                                                                         LCE1B WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                  100
D66V4, binary
                 cls
clus               0  1
  LCE1B MUTATED    2  5
  LCE1B WILD-TYPE 44 86
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LCE1B MUTATED      2    5
  LCE1B WILD-TYPE   44   86
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  FEMALE             2              44
  MALE               5              86
                 vv
clus               M0  M1 M1A M1B M1C
  LCE1B MUTATED     6   0   0   0   0
  LCE1B WILD-TYPE 113   1   1   2   1
D66V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  LCE1B MUTATED    4  0   1   0  0   0   0   0  1  0
  LCE1B WILD-TYPE 67  2   5  11  1   4  10   4 14  1
D66V6, multiclass
D66V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  LCE1B MUTATED             0       0        1        0        2         0
  LCE1B WILD-TYPE           1      15        7       12       14         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  LCE1B MUTATED           1         0         0          0          1
  LCE1B WILD-TYPE         6         4         7          5         15
                 vv
clus              STAGE IIIC STAGE IV
  LCE1B MUTATED            1        0
  LCE1B WILD-TYPE         18        3
D66V8, multiclass

Clustering(67) Variable = PARM1 MUTATION ANALYSIS
D67V1, survival
                 sevent
clus2              0  1
  PARM1 MUTATED    2  5
  PARM1 WILD-TYPE 30 39
  PARM1 MUTATED PARM1 WILD-TYPE 
              7              69 
  PARM1 MUTATED PARM1 WILD-TYPE 
              5              39 
$`PARM1 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A2J8 TCGA-EE-A185 TCGA-EE-A29D TCGA-EE-A29P TCGA-FW-A3R5 
       70.16         8.38         4.27        11.15        12.03         1.02 
TCGA-GN-A266 
       10.09 

$`PARM1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.47        32.55        98.76        28.08        22.55        10.26 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
       21.14        11.41         6.35        15.25        45.70        13.32 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       24.00         9.30         5.39         4.01         2.86        48.79 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       35.80        51.12        10.03        39.19        13.68         9.99 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
       17.56        14.83        11.57         6.31         1.12        12.20 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       36.07         5.13        37.97        38.63         4.41         1.08 
TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 
        9.47         8.12         8.84         9.99         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
        4.18        12.99        28.64        42.84        78.44         6.58 
TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
        8.81        15.35        24.85        31.33        84.72        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  PARM1 MUTATED PARM1 WILD-TYPE 
           1.02            1.08 
  PARM1 MUTATED PARM1 WILD-TYPE 
          70.16           98.76 
  PARM1 MUTATED PARM1 WILD-TYPE 
          10.09           13.68 
[1] "1.0 - 70.2 (10.1)" "1.1 - 98.8 (13.7)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
[1] "hr=" "1.9"
D67V2, continuous
D67V3, binary
                 cls
clus               0  1
  PARM1 MUTATED    3  7
  PARM1 WILD-TYPE 29 98
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARM1 MUTATED      3    7
  PARM1 WILD-TYPE   29   98
                                                                                          clus
vv                                                                                         PARM1 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  7
                                                                                          clus
vv                                                                                         PARM1 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   98
D67V4, binary
                 cls
clus               0  1
  PARM1 MUTATED    2  8
  PARM1 WILD-TYPE 44 83
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARM1 MUTATED      2    8
  PARM1 WILD-TYPE   44   83
        clus
vv       PARM1 MUTATED PARM1 WILD-TYPE
  FEMALE             2              44
  MALE               8              83
                 vv
clus               M0  M1 M1A M1B M1C
  PARM1 MUTATED     9   0   0   0   0
  PARM1 WILD-TYPE 110   1   1   2   1
D67V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  PARM1 MUTATED    4  0   0   2  1   0   0   1  1  0
  PARM1 WILD-TYPE 67  2   6   9  0   4  10   3 14  1
D67V6, multiclass
D67V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PARM1 MUTATED             0       0        1        1        1         0
  PARM1 WILD-TYPE           1      15        7       11       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PARM1 MUTATED           0         1         3          0          0
  PARM1 WILD-TYPE         7         3         4          5         16
                 vv
clus              STAGE IIIC STAGE IV
  PARM1 MUTATED            2        0
  PARM1 WILD-TYPE         17        3
D67V8, multiclass

Clustering(68) Variable = ACSM2B MUTATION ANALYSIS
D68V1, survival
                  sevent
clus2               0  1
  ACSM2B MUTATED    4  6
  ACSM2B WILD-TYPE 28 38
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              10               66 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
               6               38 
$`ACSM2B MUTATED`
TCGA-EE-A183 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-ER-A19M 
       12.20        37.97        11.15        38.63         1.08        28.64 
TCGA-ER-A1A1 TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A267 
       78.44         8.81         1.02        16.21 

$`ACSM2B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        36.69        25.15        22.36         6.64 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       19.36         7.00        17.56        14.83        11.57         6.31 
TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29H TCGA-EE-A29N 
        1.12         4.27        36.07         5.13         4.41         9.47 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 
       12.03         8.12         8.84         9.99         8.09        11.31 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F 
       25.28        23.90         9.67         8.94         3.52        11.11 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A3ET TCGA-GN-A261 TCGA-GN-A262 
        4.18        12.99        42.84         6.58        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       31.33        84.72        10.09        15.39        12.16        14.70 

  ACSM2B MUTATED ACSM2B WILD-TYPE 
            1.02             1.12 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
           78.44            98.76 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
          14.205           12.575 
[1] "1.0 - 78.4 (14.2)" "1.1 - 98.8 (12.6)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JK       TCGA-D3-A3C6 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF       TCGA-D3-A3MO 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3MV       TCGA-D9-A3Z1       TCGA-D9-A3Z3       TCGA-DA-A1HV 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1HW       TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1I2       TCGA-DA-A1I4       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2       TCGA-DA-A3F3 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X       TCGA-EE-A17Z 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A181       TCGA-EE-A183       TCGA-EE-A185       TCGA-EE-A20B 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A20F       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29N       TCGA-EE-A29P 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29X 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A6       TCGA-ER-A19D       TCGA-ER-A19F       TCGA-ER-A19J 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-ER-A19L       TCGA-ER-A19M       TCGA-ER-A19N       TCGA-ER-A1A1 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-ER-A3ET       TCGA-FS-A1ZR       TCGA-FW-A3R5       TCGA-GN-A261 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-GN-A262       TCGA-GN-A264       TCGA-GN-A265       TCGA-GN-A266 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
[1] "hr=" "1.1"
D68V2, continuous
D68V3, binary
                  cls
clus                0  1
  ACSM2B MUTATED    3 21
  ACSM2B WILD-TYPE 29 84
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACSM2B MUTATED      3   21
  ACSM2B WILD-TYPE   29   84
                                                                                          clus
vv                                                                                         ACSM2B MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              3
  REGIONAL LYMPH NODE                                                                                  21
                                                                                          clus
vv                                                                                         ACSM2B WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               29
  REGIONAL LYMPH NODE                                                                                    84
D68V4, binary
                  cls
clus                0  1
  ACSM2B MUTATED    2 22
  ACSM2B WILD-TYPE 44 69
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACSM2B MUTATED      2   22
  ACSM2B WILD-TYPE   44   69
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  FEMALE              2               44
  MALE               22               69
                  vv
clus               M0 M1 M1A M1B M1C
  ACSM2B MUTATED   22  0   0   0   0
  ACSM2B WILD-TYPE 97  1   1   2   1
D68V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  ACSM2B MUTATED   15  0   1   2  1   1   0   0  2  0
  ACSM2B WILD-TYPE 56  2   5   9  0   3  10   4 13  1
D68V6, multiclass
D68V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ACSM2B MUTATED             0       4        1        3        3         1
  ACSM2B WILD-TYPE           1      11        7        9       13         5
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ACSM2B MUTATED           2         1         1          1          1
  ACSM2B WILD-TYPE         5         3         6          4         15
                  vv
clus               STAGE IIIC STAGE IV
  ACSM2B MUTATED            3        0
  ACSM2B WILD-TYPE         16        3
D68V8, multiclass

Clustering(69) Variable = BAGE2 MUTATION ANALYSIS
D69V1, survival
                 sevent
clus2              0  1
  BAGE2 MUTATED    3  1
  BAGE2 WILD-TYPE 29 43
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              4              72 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              1              43 
$`BAGE2 MUTATED`
TCGA-DA-A1HY TCGA-EE-A185 TCGA-FW-A3R5 TCGA-GN-A26D 
       51.12         4.27         1.02        14.70 

$`BAGE2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        48.79        35.80        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
        7.00        17.56        14.83        11.57         6.31         1.12 
TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       12.20        36.07         5.13        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41         1.08         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        9.99         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 
       42.84        78.44         6.58         8.81        15.35        24.85 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       31.33        84.72        10.09        16.21        15.39        12.16 

  BAGE2 MUTATED BAGE2 WILD-TYPE 
           1.02            1.08 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
          51.12           98.76 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
          9.485          12.595 
[1] "1.0 - 51.1 (9.5)"  "1.1 - 98.8 (12.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" 
[1] "hr=" "1.9"
D69V2, continuous
D69V3, binary
                 cls
clus               0  1
  BAGE2 MUTATED    0  7
  BAGE2 WILD-TYPE 32 98
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BAGE2 MUTATED      0    7
  BAGE2 WILD-TYPE   32   98
                                                                                          clus
vv                                                                                         BAGE2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                  7
                                                                                          clus
vv                                                                                         BAGE2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                   98
D69V4, binary
                 cls
clus               0  1
  BAGE2 MUTATED    3  4
  BAGE2 WILD-TYPE 43 87
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BAGE2 MUTATED      3    4
  BAGE2 WILD-TYPE   43   87
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  FEMALE             3              43
  MALE               4              87
                 vv
clus               M0  M1 M1A M1B M1C
  BAGE2 MUTATED     5   0   0   0   1
  BAGE2 WILD-TYPE 114   1   1   2   0
D69V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  BAGE2 MUTATED    2  0   1   0  1   0   0   1  2  0
  BAGE2 WILD-TYPE 69  2   5  11  0   4  10   3 13  1
D69V6, multiclass
D69V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  BAGE2 MUTATED             0       0        0        0        0         0
  BAGE2 WILD-TYPE           1      15        8       12       16         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  BAGE2 MUTATED           1         1         1          1          0
  BAGE2 WILD-TYPE         6         3         6          4         16
                 vv
clus              STAGE IIIC STAGE IV
  BAGE2 MUTATED            2        1
  BAGE2 WILD-TYPE         17        2
D69V8, multiclass

Clustering(70) Variable = CECR6 MUTATION ANALYSIS
D70V1, survival
                 sevent
clus2              0  1
  CECR6 MUTATED    1  2
  CECR6 WILD-TYPE 31 42
  CECR6 MUTATED CECR6 WILD-TYPE 
              3              73 
  CECR6 MUTATED CECR6 WILD-TYPE 
              2              42 
$`CECR6 MUTATED`
TCGA-D3-A3CC TCGA-DA-A1HW TCGA-GN-A267 
       45.70        35.80        16.21 

$`CECR6 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       13.32        24.00         9.30         5.39         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       48.79        51.12        10.03        39.19        13.68         9.99 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       36.69        25.15        22.36         6.64        19.36         7.00 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
       17.56        14.83        11.57         6.31         1.12        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        4.27        36.07         5.13        37.97        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        4.41         1.08         9.47        12.03         8.12         8.84 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
        9.99         8.09        11.31        25.28        23.90         9.67 
TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M 
        8.94         3.52        11.11         4.18        12.99        28.64 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-FW-A3R5 TCGA-GN-A261 
       42.84        78.44         6.58         8.81         1.02        15.35 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A26A 
       24.85        31.33        84.72        10.09        15.39        12.16 
TCGA-GN-A26D 
       14.70 

  CECR6 MUTATED CECR6 WILD-TYPE 
          16.21            1.02 
  CECR6 MUTATED CECR6 WILD-TYPE 
          45.70           98.76 
  CECR6 MUTATED CECR6 WILD-TYPE 
          35.80           12.16 
[1] "16.2 - 45.7 (35.8)" "1.0 - 98.8 (12.2)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
  "CECR6 MUTATED" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
  "CECR6 MUTATED" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
  "CECR6 MUTATED" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
  "CECR6 MUTATED" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
  "CECR6 MUTATED" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
  "CECR6 MUTATED" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
  "CECR6 MUTATED" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
  "CECR6 MUTATED" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
  "CECR6 MUTATED" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" "CECR6 WILD-TYPE" 
[1] "hr=" "1.6"
D70V2, continuous
D70V3, binary
                 cls
clus                0   1
  CECR6 MUTATED     1   5
  CECR6 WILD-TYPE  31 100
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CECR6 MUTATED      1    5
  CECR6 WILD-TYPE   31  100
                                                                                          clus
vv                                                                                         CECR6 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  5
                                                                                          clus
vv                                                                                         CECR6 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                  100
D70V4, binary
                 cls
clus               0  1
  CECR6 MUTATED    2  4
  CECR6 WILD-TYPE 44 87
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CECR6 MUTATED      2    4
  CECR6 WILD-TYPE   44   87
        clus
vv       CECR6 MUTATED CECR6 WILD-TYPE
  FEMALE             2              44
  MALE               4              87
                 vv
clus               M0  M1 M1A M1B M1C
  CECR6 MUTATED     6   0   0   0   0
  CECR6 WILD-TYPE 113   1   1   2   1
D70V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CECR6 MUTATED    3  0   1   1  0   1   0   0  0  0
  CECR6 WILD-TYPE 68  2   5  10  1   3  10   4 15  1
D70V6, multiclass
D70V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CECR6 MUTATED             0       1        0        0        1         0
  CECR6 WILD-TYPE           1      14        8       12       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CECR6 MUTATED           0         1         0          1          1
  CECR6 WILD-TYPE         7         3         7          4         15
                 vv
clus              STAGE IIIC STAGE IV
  CECR6 MUTATED            0        0
  CECR6 WILD-TYPE         19        3
D70V8, multiclass

Clustering(71) Variable = OR4M2 MUTATION ANALYSIS
D71V1, survival
                 sevent
clus2              0  1
  OR4M2 MUTATED    4  3
  OR4M2 WILD-TYPE 28 41
  OR4M2 MUTATED OR4M2 WILD-TYPE 
              7              69 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
              3              41 
$`OR4M2 MUTATED`
TCGA-DA-A1HV TCGA-EE-A181 TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29S TCGA-EE-A2A0 
       48.79         1.12        38.63         1.08         9.99        11.31 
TCGA-FW-A3R5 
        1.02 

$`OR4M2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        2.86        35.80        51.12        10.03        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        9.99        36.69        25.15        22.36         6.64        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 
        7.00        17.56        14.83        11.57         6.31        12.20 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H 
        4.27        36.07         5.13        37.97        11.15         4.41 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29X TCGA-EE-A2A1 
        9.47        12.03         8.12         8.84         8.09        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       23.90         9.67         8.94         3.52        11.11         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR 
       12.99        28.64        42.84        78.44         6.58         8.81 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       15.35        24.85        31.33        84.72        10.09        16.21 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       15.39        12.16        14.70 

  OR4M2 MUTATED OR4M2 WILD-TYPE 
           1.02            2.86 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
          48.79           98.76 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
           9.99           13.32 
[1] "1.0 - 48.8 (10.0)" "2.9 - 98.8 (13.3)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
[1] "hr=" "1"  
D71V2, continuous
D71V3, binary
                 cls
clus               0  1
  OR4M2 MUTATED    2 13
  OR4M2 WILD-TYPE 30 92
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M2 MUTATED      2   13
  OR4M2 WILD-TYPE   30   92
                                                                                          clus
vv                                                                                         OR4M2 MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                 13
                                                                                          clus
vv                                                                                         OR4M2 WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   92
D71V4, binary
                 cls
clus               0  1
  OR4M2 MUTATED    4 11
  OR4M2 WILD-TYPE 42 80
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M2 MUTATED      4   11
  OR4M2 WILD-TYPE   42   80
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  FEMALE             4              42
  MALE              11              80
                 vv
clus               M0  M1 M1A M1B M1C
  OR4M2 MUTATED    14   0   0   0   0
  OR4M2 WILD-TYPE 105   1   1   2   1
D71V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  OR4M2 MUTATED    9  0   1   1  1   0   1   0  1  0
  OR4M2 WILD-TYPE 62  2   5  10  0   4   9   4 14  1
D71V6, multiclass
D71V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR4M2 MUTATED             0       2        0        0        3         3
  OR4M2 WILD-TYPE           1      13        8       12       13         3
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR4M2 MUTATED           1         0         1          0          3
  OR4M2 WILD-TYPE         6         4         6          5         13
                 vv
clus              STAGE IIIC STAGE IV
  OR4M2 MUTATED            1        0
  OR4M2 WILD-TYPE         18        3
D71V8, multiclass

Clustering(72) Variable = CERKL MUTATION ANALYSIS
D72V1, survival
                 sevent
clus2              0  1
  CERKL MUTATED    2  3
  CERKL WILD-TYPE 30 41
  CERKL MUTATED CERKL WILD-TYPE 
              5              71 
  CERKL MUTATED CERKL WILD-TYPE 
              3              41 
$`CERKL MUTATED`
TCGA-DA-A1IC TCGA-EE-A29L TCGA-EE-A29R TCGA-FW-A3R5 TCGA-GN-A266 
        6.64         1.08         8.84         1.02        10.09 

$`CERKL WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.47        32.55        70.16        98.76        28.08        22.55 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       10.26         8.38        21.14        11.41         6.35        15.25 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A3Z1 
       45.70        13.32        24.00         9.30         5.39         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.86        48.79        35.80        51.12        10.03        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A3F2 
       13.68         9.99        36.69        25.15        22.36        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
        7.00        17.56        14.83        11.57         6.31         1.12 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D 
       12.20         4.27        36.07         5.13        37.97        11.15 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S 
       38.63         4.41         9.47        12.03         8.12         9.99 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
        8.09        11.31        25.28        23.90         9.67         8.94 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N 
        3.52        11.11         4.18        12.99        28.64        42.84 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1ZR TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       78.44         6.58         8.81        15.35        24.85        31.33 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        16.21        15.39        12.16        14.70 

  CERKL MUTATED CERKL WILD-TYPE 
           1.02            1.12 
  CERKL MUTATED CERKL WILD-TYPE 
          10.09           98.76 
  CERKL MUTATED CERKL WILD-TYPE 
           6.64           13.68 
[1] "1.0 - 10.1 (6.6)"  "1.1 - 98.8 (13.7)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CERKL WILD-TYPE"   "CERKL MUTATED" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CERKL WILD-TYPE"   "CERKL MUTATED" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CERKL WILD-TYPE"   "CERKL MUTATED" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CERKL WILD-TYPE" "CERKL WILD-TYPE"   "CERKL MUTATED" "CERKL WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE"   "CERKL MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CERKL WILD-TYPE"   "CERKL MUTATED" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CERKL WILD-TYPE"   "CERKL MUTATED" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CERKL WILD-TYPE"   "CERKL MUTATED" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CERKL WILD-TYPE" "CERKL WILD-TYPE"   "CERKL MUTATED" "CERKL WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE"   "CERKL MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JK      TCGA-D3-A3C6 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF      TCGA-D3-A3MO 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-D3-A3MV      TCGA-D9-A3Z1      TCGA-D9-A3Z3      TCGA-DA-A1HV 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-DA-A1HW      TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2      TCGA-DA-A3F3 
"CERKL WILD-TYPE"   "CERKL MUTATED" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X      TCGA-EE-A17Z 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A181      TCGA-EE-A183      TCGA-EE-A185      TCGA-EE-A20B 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P 
"CERKL WILD-TYPE"   "CERKL MUTATED" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S      TCGA-EE-A29X 
"CERKL WILD-TYPE"   "CERKL MUTATED" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A2A0      TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-EE-A2A6      TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-ER-A19L      TCGA-ER-A19M      TCGA-ER-A19N      TCGA-ER-A1A1 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1ZR      TCGA-FW-A3R5      TCGA-GN-A261 
"CERKL WILD-TYPE" "CERKL WILD-TYPE"   "CERKL MUTATED" "CERKL WILD-TYPE" 
     TCGA-GN-A262      TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE"   "CERKL MUTATED" 
     TCGA-GN-A267      TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" "CERKL WILD-TYPE" 
[1] "hr=" "5.7"
D72V2, continuous
D72V3, binary
                 cls
clus               0  1
  CERKL MUTATED    3  7
  CERKL WILD-TYPE 29 98
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CERKL MUTATED      3    7
  CERKL WILD-TYPE   29   98
                                                                                          clus
vv                                                                                         CERKL MUTATED
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  7
                                                                                          clus
vv                                                                                         CERKL WILD-TYPE
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   98
D72V4, binary
                 cls
clus               0  1
  CERKL MUTATED    3  7
  CERKL WILD-TYPE 43 84
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CERKL MUTATED      3    7
  CERKL WILD-TYPE   43   84
        clus
vv       CERKL MUTATED CERKL WILD-TYPE
  FEMALE             3              43
  MALE               7              84
                 vv
clus               M0  M1 M1A M1B M1C
  CERKL MUTATED     9   0   0   0   0
  CERKL WILD-TYPE 110   1   1   2   1
D72V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2 N2A N2B N2C N3 NX
  CERKL MUTATED    5  0   0   1  1   0   0   1  1  0
  CERKL WILD-TYPE 66  2   6  10  0   4  10   3 14  1
D72V6, multiclass
D72V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CERKL MUTATED             0       1        1        0        3         0
  CERKL WILD-TYPE           1      14        7       12       13         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CERKL MUTATED           0         0         1          0          1
  CERKL WILD-TYPE         7         4         6          5         15
                 vv
clus              STAGE IIIC STAGE IV
  CERKL MUTATED            2        0
  CERKL WILD-TYPE         17        3
D72V8, multiclass
                     V1.D                        V2                        V3 
          "Time to Death"                     "AGE" "PRIMARY.SITE.OF.DISEASE" 
                       V4                        V5                        V6 
                 "GENDER"      "DISTANT.METASTASIS"   "LYMPH.NODE.METASTASIS" 
                       V7                        V8 
        "TUMOR.STAGECODE"   "NEOPLASM.DISEASESTAGE" 
> q(save="no")
