
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/399373/SKCM-Regional_Metastatic.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/SKCM-Regional_Metastatic/3157553/1.GDAC_mergedClustering.Finished/SKCM-Regional_Metastatic.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SKCM-Regional_Metastatic", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"                          "-oT=SKCM-Regional_Metastatic"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=152, in cluster file=137, common to both=137
[1]  72 137
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              23              114 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              23              114 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            23            114 
  TP53 MUTATED TP53 WILD-TYPE 
            23            114 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            73             64 
  BRAF MUTATED BRAF WILD-TYPE 
            73             64 
[1] "C15ORF23 MUTATION ANALYSIS"
[1] 3
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                10                127 
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                10                127 
[1] "ERVFRDE1 MUTATION ANALYSIS"
[1] 3
  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
                 3                134 
  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
                 3                134 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
            39             98 
  NRAS MUTATED NRAS WILD-TYPE 
            39             98 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            12            125 
  PTEN MUTATED PTEN WILD-TYPE 
            12            125 
[1] "PPP6C MUTATION ANALYSIS"
[1] 3
  PPP6C MUTATED PPP6C WILD-TYPE 
             14             123 
  PPP6C MUTATED PPP6C WILD-TYPE 
             14             123 
[1] "PRB4 MUTATION ANALYSIS"
[1] 3
  PRB4 MUTATED PRB4 WILD-TYPE 
            16            121 
  PRB4 MUTATED PRB4 WILD-TYPE 
            16            121 
[1] "RAC1 MUTATION ANALYSIS"
[1] 3
  RAC1 MUTATED RAC1 WILD-TYPE 
             9            128 
  RAC1 MUTATED RAC1 WILD-TYPE 
             9            128 
[1] "CDH9 MUTATION ANALYSIS"
[1] 3
  CDH9 MUTATED CDH9 WILD-TYPE 
            23            114 
  CDH9 MUTATED CDH9 WILD-TYPE 
            23            114 
[1] "STK19 MUTATION ANALYSIS"
[1] 3
  STK19 MUTATED STK19 WILD-TYPE 
              9             128 
  STK19 MUTATED STK19 WILD-TYPE 
              9             128 
[1] "ADH1C MUTATION ANALYSIS"
[1] 3
  ADH1C MUTATED ADH1C WILD-TYPE 
             20             117 
  ADH1C MUTATED ADH1C WILD-TYPE 
             20             117 
[1] "TCEB3C MUTATION ANALYSIS"
[1] 3
  TCEB3C MUTATED TCEB3C WILD-TYPE 
              19              118 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
              19              118 
[1] "DDX3X MUTATION ANALYSIS"
[1] 3
  DDX3X MUTATED DDX3X WILD-TYPE 
             14             123 
  DDX3X MUTATED DDX3X WILD-TYPE 
             14             123 
[1] "TRAT1 MUTATION ANALYSIS"
[1] 3
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              9             128 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              9             128 
[1] "TTN MUTATION ANALYSIS"
[1] 3
  TTN MUTATED TTN WILD-TYPE 
          108            29 
  TTN MUTATED TTN WILD-TYPE 
          108            29 
[1] "GH2 MUTATION ANALYSIS"
[1] 3
  GH2 MUTATED GH2 WILD-TYPE 
           10           127 
  GH2 MUTATED GH2 WILD-TYPE 
           10           127 
[1] "TFEC MUTATION ANALYSIS"
[1] 3
  TFEC MUTATED TFEC WILD-TYPE 
            13            124 
  TFEC MUTATED TFEC WILD-TYPE 
            13            124 
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
             7            130 
  IDH1 MUTATED IDH1 WILD-TYPE 
             7            130 
[1] "WDR12 MUTATION ANALYSIS"
[1] 3
  WDR12 MUTATED WDR12 WILD-TYPE 
              9             128 
  WDR12 MUTATED WDR12 WILD-TYPE 
              9             128 
[1] "RGS18 MUTATION ANALYSIS"
[1] 3
  RGS18 MUTATED RGS18 WILD-TYPE 
              7             130 
  RGS18 MUTATED RGS18 WILD-TYPE 
              7             130 
[1] "POF1B MUTATION ANALYSIS"
[1] 3
  POF1B MUTATED POF1B WILD-TYPE 
             17             120 
  POF1B MUTATED POF1B WILD-TYPE 
             17             120 
[1] "OR5AC2 MUTATION ANALYSIS"
[1] 3
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
              16              121 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
              16              121 
[1] "VEGFC MUTATION ANALYSIS"
[1] 3
  VEGFC MUTATED VEGFC WILD-TYPE 
             13             124 
  VEGFC MUTATED VEGFC WILD-TYPE 
             13             124 
[1] "RERG MUTATION ANALYSIS"
[1] 3
  RERG MUTATED RERG WILD-TYPE 
             9            128 
  RERG MUTATED RERG WILD-TYPE 
             9            128 
[1] "CCNE2 MUTATION ANALYSIS"
[1] 3
  CCNE2 MUTATED CCNE2 WILD-TYPE 
             10             127 
  CCNE2 MUTATED CCNE2 WILD-TYPE 
             10             127 
[1] "GPR141 MUTATION ANALYSIS"
[1] 3
  GPR141 MUTATED GPR141 WILD-TYPE 
              12              125 
  GPR141 MUTATED GPR141 WILD-TYPE 
              12              125 
[1] "GK2 MUTATION ANALYSIS"
[1] 3
  GK2 MUTATED GK2 WILD-TYPE 
           17           120 
  GK2 MUTATED GK2 WILD-TYPE 
           17           120 
[1] "NAP1L2 MUTATION ANALYSIS"
[1] 3
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
              12              125 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
              12              125 
[1] "SNAP91 MUTATION ANALYSIS"
[1] 3
  SNAP91 MUTATED SNAP91 WILD-TYPE 
              18              119 
  SNAP91 MUTATED SNAP91 WILD-TYPE 
              18              119 
[1] "PRB2 MUTATION ANALYSIS"
[1] 3
  PRB2 MUTATED PRB2 WILD-TYPE 
            20            117 
  PRB2 MUTATED PRB2 WILD-TYPE 
            20            117 
[1] "TLL1 MUTATION ANALYSIS"
[1] 3
  TLL1 MUTATED TLL1 WILD-TYPE 
            27            110 
  TLL1 MUTATED TLL1 WILD-TYPE 
            27            110 
[1] "HBD MUTATION ANALYSIS"
[1] 3
  HBD MUTATED HBD WILD-TYPE 
            8           129 
  HBD MUTATED HBD WILD-TYPE 
            8           129 
[1] "GRXCR2 MUTATION ANALYSIS"
[1] 3
  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
              11              126 
  GRXCR2 MUTATED GRXCR2 WILD-TYPE 
              11              126 
[1] "NOTCH2NL MUTATION ANALYSIS"
[1] 3
  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
                 9                128 
  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
                 9                128 
[1] "OXA1L MUTATION ANALYSIS"
[1] 3
  OXA1L MUTATED OXA1L WILD-TYPE 
              4             133 
  OXA1L MUTATED OXA1L WILD-TYPE 
              4             133 
[1] "AREG MUTATION ANALYSIS"
[1] 3
  AREG MUTATED AREG WILD-TYPE 
             6            131 
  AREG MUTATED AREG WILD-TYPE 
             6            131 
[1] "HBG2 MUTATION ANALYSIS"
[1] 3
  HBG2 MUTATED HBG2 WILD-TYPE 
             6            131 
  HBG2 MUTATED HBG2 WILD-TYPE 
             6            131 
[1] "SERPINB4 MUTATION ANALYSIS"
[1] 3
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                20                117 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                20                117 
[1] "SPTLC3 MUTATION ANALYSIS"
[1] 3
  SPTLC3 MUTATED SPTLC3 WILD-TYPE 
              14              123 
  SPTLC3 MUTATED SPTLC3 WILD-TYPE 
              14              123 
[1] "TAF1A MUTATION ANALYSIS"
[1] 3
  TAF1A MUTATED TAF1A WILD-TYPE 
              9             128 
  TAF1A MUTATED TAF1A WILD-TYPE 
              9             128 
[1] "CLVS2 MUTATION ANALYSIS"
[1] 3
  CLVS2 MUTATED CLVS2 WILD-TYPE 
             13             124 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
             13             124 
[1] "CCDC102B MUTATION ANALYSIS"
[1] 3
  CCDC102B MUTATED CCDC102B WILD-TYPE 
                15                122 
  CCDC102B MUTATED CCDC102B WILD-TYPE 
                15                122 
[1] "OR4N2 MUTATION ANALYSIS"
[1] 3
  OR4N2 MUTATED OR4N2 WILD-TYPE 
             15             122 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
             15             122 
[1] "OR8D4 MUTATION ANALYSIS"
[1] 3
  OR8D4 MUTATED OR8D4 WILD-TYPE 
              9             128 
  OR8D4 MUTATED OR8D4 WILD-TYPE 
              9             128 
[1] "RBM11 MUTATION ANALYSIS"
[1] 3
  RBM11 MUTATED RBM11 WILD-TYPE 
             10             127 
  RBM11 MUTATED RBM11 WILD-TYPE 
             10             127 
[1] "DEFB118 MUTATION ANALYSIS"
[1] 3
  DEFB118 MUTATED DEFB118 WILD-TYPE 
                7               130 
  DEFB118 MUTATED DEFB118 WILD-TYPE 
                7               130 
[1] "GRXCR1 MUTATION ANALYSIS"
[1] 3
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
              13              124 
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
              13              124 
[1] "RGPD3 MUTATION ANALYSIS"
[1] 3
  RGPD3 MUTATED RGPD3 WILD-TYPE 
             22             115 
  RGPD3 MUTATED RGPD3 WILD-TYPE 
             22             115 
[1] "CA1 MUTATION ANALYSIS"
[1] 3
  CA1 MUTATED CA1 WILD-TYPE 
            8           129 
  CA1 MUTATED CA1 WILD-TYPE 
            8           129 
[1] "HNF4G MUTATION ANALYSIS"
[1] 3
  HNF4G MUTATED HNF4G WILD-TYPE 
             15             122 
  HNF4G MUTATED HNF4G WILD-TYPE 
             15             122 
[1] "ACTL7B MUTATION ANALYSIS"
[1] 3
  ACTL7B MUTATED ACTL7B WILD-TYPE 
               8              129 
  ACTL7B MUTATED ACTL7B WILD-TYPE 
               8              129 
[1] "SPAG16 MUTATION ANALYSIS"
[1] 3
  SPAG16 MUTATED SPAG16 WILD-TYPE 
              12              125 
  SPAG16 MUTATED SPAG16 WILD-TYPE 
              12              125 
[1] "PCDHB8 MUTATION ANALYSIS"
[1] 3
  PCDHB8 MUTATED PCDHB8 WILD-TYPE 
              23              114 
  PCDHB8 MUTATED PCDHB8 WILD-TYPE 
              23              114 
[1] "HIST1H2AA MUTATION ANALYSIS"
[1] 3
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  5                 132 
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  5                 132 
[1] "OR10K2 MUTATION ANALYSIS"
[1] 3
  OR10K2 MUTATED OR10K2 WILD-TYPE 
              14              123 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
              14              123 
[1] "PHGDH MUTATION ANALYSIS"
[1] 3
  PHGDH MUTATED PHGDH WILD-TYPE 
              8             129 
  PHGDH MUTATED PHGDH WILD-TYPE 
              8             129 
[1] "OR9K2 MUTATION ANALYSIS"
[1] 3
  OR9K2 MUTATED OR9K2 WILD-TYPE 
             11             126 
  OR9K2 MUTATED OR9K2 WILD-TYPE 
             11             126 
[1] "LIN7A MUTATION ANALYSIS"
[1] 3
  LIN7A MUTATED LIN7A WILD-TYPE 
              8             129 
  LIN7A MUTATED LIN7A WILD-TYPE 
              8             129 
[1] "USP17L2 MUTATION ANALYSIS"
[1] 3
  USP17L2 MUTATED USP17L2 WILD-TYPE 
               13               124 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
               13               124 
[1] "ANKRD20A4 MUTATION ANALYSIS"
[1] 3
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  4                 133 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  4                 133 
[1] "CYLC2 MUTATION ANALYSIS"
[1] 3
  CYLC2 MUTATED CYLC2 WILD-TYPE 
             14             123 
  CYLC2 MUTATED CYLC2 WILD-TYPE 
             14             123 
[1] "VGLL1 MUTATION ANALYSIS"
[1] 3
  VGLL1 MUTATED VGLL1 WILD-TYPE 
              5             132 
  VGLL1 MUTATED VGLL1 WILD-TYPE 
              5             132 
[1] "DEFB110 MUTATION ANALYSIS"
[1] 3
  DEFB110 MUTATED DEFB110 WILD-TYPE 
                5               132 
  DEFB110 MUTATED DEFB110 WILD-TYPE 
                5               132 
[1] "LCE1B MUTATION ANALYSIS"
[1] 3
  LCE1B MUTATED LCE1B WILD-TYPE 
              7             130 
  LCE1B MUTATED LCE1B WILD-TYPE 
              7             130 
[1] "PARM1 MUTATION ANALYSIS"
[1] 3
  PARM1 MUTATED PARM1 WILD-TYPE 
             10             127 
  PARM1 MUTATED PARM1 WILD-TYPE 
             10             127 
[1] "ACSM2B MUTATION ANALYSIS"
[1] 3
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              24              113 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              24              113 
[1] "BAGE2 MUTATION ANALYSIS"
[1] 3
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              7             130 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              7             130 
[1] "CECR6 MUTATION ANALYSIS"
[1] 3
  CECR6 MUTATED CECR6 WILD-TYPE 
              6             131 
  CECR6 MUTATED CECR6 WILD-TYPE 
              6             131 
[1] "OR4M2 MUTATION ANALYSIS"
[1] 3
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             15             122 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             15             122 
[1] "CERKL MUTATION ANALYSIS"
[1] 3
  CERKL MUTATED CERKL WILD-TYPE 
             10             127 
  CERKL MUTATED CERKL WILD-TYPE 
             10             127 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 8 rows and 137 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 137 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CDKN2A MUTATION ANALYSIS
D1V1, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               19
  CLUS_2              7               17
  CLUS_3              6               34
  CLUS_4              7               44
D1V2, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              5               32
  CLUS_2              7               47
  CLUS_3             11               35
D1V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              6               15
  CLUS_2              4               31
  CLUS_3              7               30
D1V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              5               11
  CLUS_2              2               24
  CLUS_3              7               26
  CLUS_4              3               15
D1V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              9               44
  CLUS_2              5               32
  CLUS_3              9               36
D1V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              9               37
  CLUS_2              9               52
  CLUS_3              5               23
D1V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             10               42
  CLUS_2              4               25
  CLUS_3              9               47
D1V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              6               25
  CLUS_2              3               15
  CLUS_3             14               74

Clustering(2) Variable = TP53 MUTATION ANALYSIS
D2V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4             18
  CLUS_2            4             20
  CLUS_3            3             37
  CLUS_4           12             39
D2V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            7             47
  CLUS_3           13             33
D2V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            3             18
  CLUS_2            9             26
  CLUS_3            5             32
D2V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            3             13
  CLUS_2            7             19
  CLUS_3            4             29
  CLUS_4            3             15
D2V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4             49
  CLUS_2            8             29
  CLUS_3           10             35
D2V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            3             43
  CLUS_2           14             47
  CLUS_3            5             23
D2V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           15             37
  CLUS_2            2             27
  CLUS_3            6             50
D2V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            2             29
  CLUS_2            2             16
  CLUS_3           19             69

Clustering(3) Variable = BRAF MUTATION ANALYSIS
D3V1, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            7             15
  CLUS_2           16              8
  CLUS_3           25             15
  CLUS_4           25             26
D3V2, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           15             22
  CLUS_2           32             22
  CLUS_3           26             20
D3V3, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           12              9
  CLUS_2           15             20
  CLUS_3           19             18
D3V4, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            8              8
  CLUS_2           12             14
  CLUS_3           12             21
  CLUS_4           14              4
D3V5, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           32             21
  CLUS_2           20             17
  CLUS_3           21             24
D3V6, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           28             18
  CLUS_2           34             27
  CLUS_3           11             17
D3V7, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           22             30
  CLUS_2           22              7
  CLUS_3           29             27
D3V8, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           17             14
  CLUS_2           12              6
  CLUS_3           44             44

Clustering(4) Variable = C15ORF23 MUTATION ANALYSIS
D4V1, multiclass
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                0                 22
  CLUS_2                1                 23
  CLUS_3                3                 37
  CLUS_4                6                 45
D4V2, multiclass
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                0                 37
  CLUS_2                4                 50
  CLUS_3                6                 40
D4V3, multiclass
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                2                 19
  CLUS_2                2                 33
  CLUS_3                4                 33
D4V4, multiclass
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                2                 24
  CLUS_3                3                 30
  CLUS_4                2                 16
D4V5, multiclass
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                5                 48
  CLUS_2                2                 35
  CLUS_3                3                 42
D4V6, multiclass
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                5                 56
  CLUS_3                2                 26
D4V7, multiclass
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                2                 27
  CLUS_3                4                 52
D4V8, multiclass
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  CLUS_1                3                 28
  CLUS_2                1                 17
  CLUS_3                6                 82

Clustering(5) Variable = ERVFRDE1 MUTATION ANALYSIS
D5V1, multiclass
        clus
vv       ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE
  CLUS_1                0                 22
  CLUS_2                0                 24
  CLUS_3                1                 39
  CLUS_4                2                 49
D5V2, multiclass
        clus
vv       ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                2                 52
  CLUS_3                0                 46
D5V3, multiclass
[1] "Remove cluster labels:" "ERVFRDE1 MUTATED"      
clus
  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
                 1                 92 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2JD 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3CE         TCGA-D9-A148         TCGA-D9-A149 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D9-A1JW         TCGA-D9-A1JX         TCGA-DA-A1HV 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I2 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I4         TCGA-DA-A1I8         TCGA-DA-A1IB 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1IC         TCGA-EE-A17X         TCGA-EE-A181 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20F         TCGA-EE-A29C 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29N         TCGA-EE-A29P         TCGA-EE-A29R 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A2A0         TCGA-EE-A2A2 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2A6         TCGA-EE-A2GC         TCGA-EE-A2GH 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GI         TCGA-EE-A2GK         TCGA-EE-A2GL 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M8         TCGA-EE-A2MC 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MR 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MS         TCGA-EE-A2MT         TCGA-EE-A2MU 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A3AA         TCGA-EE-A3AB         TCGA-EE-A3AC 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A3AD         TCGA-EE-A3AE         TCGA-EE-A3AF 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A3AG         TCGA-ER-A19D         TCGA-ER-A19F 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19N 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19O         TCGA-ER-A1A1         TCGA-FS-A1YW 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1Z4         TCGA-FS-A1ZD         TCGA-FS-A1ZG 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZM         TCGA-FS-A1ZP 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A261         TCGA-GN-A262         TCGA-GN-A264 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A265         TCGA-GN-A267         TCGA-GN-A268 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
D5V4, multiclass
[1] "Remove cluster labels:" "ERVFRDE1 MUTATED"      
clus
  ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE 
                 1                 92 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2JD 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D3-A3CE         TCGA-D9-A148         TCGA-D9-A149 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-D9-A1JW         TCGA-D9-A1JX         TCGA-DA-A1HV 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1HW         TCGA-DA-A1HY         TCGA-DA-A1I2 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1I4         TCGA-DA-A1I8         TCGA-DA-A1IB 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-DA-A1IC         TCGA-EE-A17X         TCGA-EE-A181 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A185         TCGA-EE-A20F         TCGA-EE-A29C 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29N         TCGA-EE-A29P         TCGA-EE-A29R 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A29S         TCGA-EE-A2A0         TCGA-EE-A2A2 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2A6         TCGA-EE-A2GC         TCGA-EE-A2GH 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GI         TCGA-EE-A2GK         TCGA-EE-A2GL 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GP         TCGA-EE-A2GR         TCGA-EE-A2GS 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2GT         TCGA-EE-A2GU         TCGA-EE-A2M5 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2M6         TCGA-EE-A2M8         TCGA-EE-A2MC 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MR 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A2MS         TCGA-EE-A2MT         TCGA-EE-A2MU 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A3AA         TCGA-EE-A3AB         TCGA-EE-A3AC 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A3AD         TCGA-EE-A3AE         TCGA-EE-A3AF 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-EE-A3AG         TCGA-ER-A19D         TCGA-ER-A19F 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19J         TCGA-ER-A19L         TCGA-ER-A19N 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-ER-A19O         TCGA-ER-A1A1         TCGA-FS-A1YW 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1Z4         TCGA-FS-A1ZD         TCGA-FS-A1ZG 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZM         TCGA-FS-A1ZP 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A261         TCGA-GN-A262         TCGA-GN-A264 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A265         TCGA-GN-A267         TCGA-GN-A268 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"ERVFRDE1 WILD-TYPE" "ERVFRDE1 WILD-TYPE" 
D5V5, multiclass
        clus
vv       ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE
  CLUS_1                1                 52
  CLUS_2                1                 36
  CLUS_3                1                 44
D5V6, multiclass
        clus
vv       ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                2                 59
  CLUS_3                0                 28
D5V7, multiclass
        clus
vv       ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                0                 29
  CLUS_3                2                 54
D5V8, multiclass
        clus
vv       ERVFRDE1 MUTATED ERVFRDE1 WILD-TYPE
  CLUS_1                1                 30
  CLUS_2                0                 18
  CLUS_3                2                 86

Clustering(6) Variable = NRAS MUTATION ANALYSIS
D6V1, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           13              9
  CLUS_2            3             21
  CLUS_3            8             32
  CLUS_4           15             36
D6V2, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           11             26
  CLUS_2           10             44
  CLUS_3           18             28
D6V3, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            8             13
  CLUS_2            9             26
  CLUS_3            9             28
D6V4, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            7              9
  CLUS_2            9             17
  CLUS_3            8             25
  CLUS_4            2             16
D6V5, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           15             38
  CLUS_2            9             28
  CLUS_3           15             30
D6V6, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           12             34
  CLUS_2           20             41
  CLUS_3            7             21
D6V7, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           18             34
  CLUS_2            6             23
  CLUS_3           15             41
D6V8, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            7             24
  CLUS_2            5             13
  CLUS_3           27             61

Clustering(7) Variable = PTEN MUTATION ANALYSIS
D7V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             19
  CLUS_2            1             23
  CLUS_3            5             35
  CLUS_4            3             48
D7V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4             33
  CLUS_2            2             52
  CLUS_3            6             40
D7V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             20
  CLUS_2            5             30
  CLUS_3            1             36
D7V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             24
  CLUS_3            1             32
  CLUS_4            3             15
D7V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6             47
  CLUS_2            3             34
  CLUS_3            3             42
D7V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6             40
  CLUS_2            3             58
  CLUS_3            3             25
D7V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             49
  CLUS_2            2             27
  CLUS_3            7             49
D7V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             29
  CLUS_2            2             16
  CLUS_3            8             80

Clustering(8) Variable = PPP6C MUTATION ANALYSIS
D8V1, multiclass
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             5              17
  CLUS_2             4              20
  CLUS_3             0              40
  CLUS_4             5              46
D8V2, multiclass
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             4              33
  CLUS_2             4              50
  CLUS_3             6              40
D8V3, multiclass
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             2              19
  CLUS_2             2              33
  CLUS_3             2              35
D8V4, multiclass
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             2              14
  CLUS_2             2              24
  CLUS_3             2              31
  CLUS_4             0              18
D8V5, multiclass
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             7              46
  CLUS_2             3              34
  CLUS_3             4              41
D8V6, multiclass
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             5              41
  CLUS_2             6              55
  CLUS_3             3              25
D8V7, multiclass
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             3              49
  CLUS_2             6              23
  CLUS_3             5              51
D8V8, multiclass
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  CLUS_1             4              27
  CLUS_2             3              15
  CLUS_3             7              81

Clustering(9) Variable = PRB4 MUTATION ANALYSIS
D9V1, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            2             20
  CLUS_2            3             21
  CLUS_3            6             34
  CLUS_4            5             46
D9V2, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            5             32
  CLUS_2            5             49
  CLUS_3            6             40
D9V3, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            8             27
  CLUS_3            1             36
D9V4, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            6             20
  CLUS_3            1             32
  CLUS_4            2             16
D9V5, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            4             49
  CLUS_2            7             30
  CLUS_3            5             40
D9V6, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            6             40
  CLUS_2            9             52
  CLUS_3            1             27
D9V7, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            5             47
  CLUS_2            5             24
  CLUS_3            6             50
D9V8, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            5             26
  CLUS_2            3             15
  CLUS_3            8             80

Clustering(10) Variable = RAC1 MUTATION ANALYSIS
D10V1, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            1             21
  CLUS_2            1             23
  CLUS_3            2             38
  CLUS_4            5             46
D10V2, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            4             50
  CLUS_3            3             43
D10V3, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            2             33
  CLUS_3            3             34
D10V4, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             24
  CLUS_3            2             31
  CLUS_4            1             17
D10V5, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            4             49
  CLUS_2            2             35
  CLUS_3            3             42
D10V6, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            3             58
  CLUS_3            2             26
D10V7, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            1             28
  CLUS_3            4             52
D10V8, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            5             26
  CLUS_2            0             18
  CLUS_3            4             84

Clustering(11) Variable = CDH9 MUTATION ANALYSIS
D11V1, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            3             19
  CLUS_2            5             19
  CLUS_3            6             34
  CLUS_4            9             42
D11V2, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            4             33
  CLUS_2            9             45
  CLUS_3           10             36
D11V3, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            4             17
  CLUS_2            5             30
  CLUS_3            8             29
D11V4, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            3             13
  CLUS_2            4             22
  CLUS_3            6             27
  CLUS_4            4             14
D11V5, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            8             45
  CLUS_2            6             31
  CLUS_3            9             36
D11V6, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            8             38
  CLUS_2           10             51
  CLUS_3            5             23
D11V7, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1           14             38
  CLUS_2            5             24
  CLUS_3            4             52
D11V8, multiclass
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  CLUS_1            5             26
  CLUS_2            2             16
  CLUS_3           16             72

Clustering(12) Variable = STK19 MUTATION ANALYSIS
D12V1, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             1              23
  CLUS_3             2              38
  CLUS_4             5              46
D12V2, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             6              48
  CLUS_3             3              43
D12V3, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             0              21
  CLUS_2             2              33
  CLUS_3             3              34
D12V4, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              25
  CLUS_3             2              31
  CLUS_4             2              16
D12V5, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             5              32
  CLUS_3             2              43
D12V6, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             6              55
  CLUS_3             2              26
D12V7, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             0              29
  CLUS_3             3              53
D12V8, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             0              18
  CLUS_3             7              81

Clustering(13) Variable = ADH1C MUTATION ANALYSIS
D13V1, multiclass
        clus
vv       ADH1C MUTATED ADH1C WILD-TYPE
  CLUS_1             1              21
  CLUS_2             1              23
  CLUS_3             7              33
  CLUS_4            11              40
D13V2, multiclass
        clus
vv       ADH1C MUTATED ADH1C WILD-TYPE
  CLUS_1             3              34
  CLUS_2            10              44
  CLUS_3             7              39
D13V3, multiclass
        clus
vv       ADH1C MUTATED ADH1C WILD-TYPE
  CLUS_1             2              19
  CLUS_2            10              25
  CLUS_3             4              33
D13V4, multiclass
        clus
vv       ADH1C MUTATED ADH1C WILD-TYPE
  CLUS_1             2              14
  CLUS_2             8              18
  CLUS_3             2              31
  CLUS_4             4              14
D13V5, multiclass
        clus
vv       ADH1C MUTATED ADH1C WILD-TYPE
  CLUS_1             4              49
  CLUS_2             8              29
  CLUS_3             8              37
D13V6, multiclass
        clus
vv       ADH1C MUTATED ADH1C WILD-TYPE
  CLUS_1             5              41
  CLUS_2            12              49
  CLUS_3             3              25
D13V7, multiclass
        clus
vv       ADH1C MUTATED ADH1C WILD-TYPE
  CLUS_1            12              40
  CLUS_2             4              25
  CLUS_3             4              52
D13V8, multiclass
        clus
vv       ADH1C MUTATED ADH1C WILD-TYPE
  CLUS_1             2              29
  CLUS_2             3              15
  CLUS_3            15              73

Clustering(14) Variable = TCEB3C MUTATION ANALYSIS
D14V1, multiclass
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              2               20
  CLUS_2              3               21
  CLUS_3              7               33
  CLUS_4              7               44
D14V2, multiclass
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              5               32
  CLUS_2              5               49
  CLUS_3              9               37
D14V3, multiclass
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              3               18
  CLUS_2              4               31
  CLUS_3              8               29
D14V4, multiclass
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              3               13
  CLUS_2              4               22
  CLUS_3              6               27
  CLUS_4              2               16
D14V5, multiclass
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              6               47
  CLUS_2              4               33
  CLUS_3              9               36
D14V6, multiclass
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              6               40
  CLUS_2              7               54
  CLUS_3              6               22
D14V7, multiclass
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              7               45
  CLUS_2              5               24
  CLUS_3              7               49
D14V8, multiclass
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  CLUS_1              3               28
  CLUS_2              4               14
  CLUS_3             12               76

Clustering(15) Variable = DDX3X MUTATION ANALYSIS
D15V1, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             2              20
  CLUS_2             1              23
  CLUS_3             2              38
  CLUS_4             9              42
D15V2, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             3              34
  CLUS_2             7              47
  CLUS_3             4              42
D15V3, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             4              17
  CLUS_2             2              33
  CLUS_3             3              34
D15V4, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             4              12
  CLUS_2             2              24
  CLUS_3             3              30
  CLUS_4             0              18
D15V5, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             3              50
  CLUS_2             5              32
  CLUS_3             6              39
D15V6, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             3              43
  CLUS_2             8              53
  CLUS_3             3              25
D15V7, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             6              46
  CLUS_2             4              25
  CLUS_3             4              52
D15V8, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             1              30
  CLUS_2             4              14
  CLUS_3             9              79

Clustering(16) Variable = TRAT1 MUTATION ANALYSIS
D16V1, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             0              22
  CLUS_2             2              22
  CLUS_3             3              37
  CLUS_4             4              47
D16V2, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             3              51
  CLUS_3             4              42
D16V3, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             3              32
  CLUS_3             3              34
D16V4, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              24
  CLUS_3             3              30
  CLUS_4             1              17
D16V5, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             3              34
  CLUS_3             4              41
D16V6, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             5              56
  CLUS_3             2              26
D16V7, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             1              28
  CLUS_3             3              53
D16V8, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             0              18
  CLUS_3             7              81

Clustering(17) Variable = TTN MUTATION ANALYSIS
D17V1, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          15             7
  CLUS_2          18             6
  CLUS_3          33             7
  CLUS_4          42             9
D17V2, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          26            11
  CLUS_2          44            10
  CLUS_3          38             8
D17V3, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          20             1
  CLUS_2          28             7
  CLUS_3          29             8
D17V4, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          16             0
  CLUS_2          22             4
  CLUS_3          24             9
  CLUS_4          15             3
D17V5, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          43            10
  CLUS_2          30             7
  CLUS_3          35            10
D17V6, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          37             9
  CLUS_2          50            11
  CLUS_3          21             7
D17V7, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          40            12
  CLUS_2          26             3
  CLUS_3          42            14
D17V8, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          26             5
  CLUS_2          15             3
  CLUS_3          67            21

Clustering(18) Variable = GH2 MUTATION ANALYSIS
D18V1, multiclass
        clus
vv       GH2 MUTATED GH2 WILD-TYPE
  CLUS_1           3            19
  CLUS_2           0            24
  CLUS_3           1            39
  CLUS_4           6            45
D18V2, multiclass
        clus
vv       GH2 MUTATED GH2 WILD-TYPE
  CLUS_1           2            35
  CLUS_2           4            50
  CLUS_3           4            42
D18V3, multiclass
        clus
vv       GH2 MUTATED GH2 WILD-TYPE
  CLUS_1           1            20
  CLUS_2           5            30
  CLUS_3           2            35
D18V4, multiclass
        clus
vv       GH2 MUTATED GH2 WILD-TYPE
  CLUS_1           1            15
  CLUS_2           2            24
  CLUS_3           2            31
  CLUS_4           3            15
D18V5, multiclass
        clus
vv       GH2 MUTATED GH2 WILD-TYPE
  CLUS_1           2            51
  CLUS_2           3            34
  CLUS_3           5            40
D18V6, multiclass
        clus
vv       GH2 MUTATED GH2 WILD-TYPE
  CLUS_1           2            44
  CLUS_2           6            55
  CLUS_3           2            26
D18V7, multiclass
        clus
vv       GH2 MUTATED GH2 WILD-TYPE
  CLUS_1           4            48
  CLUS_2           3            26
  CLUS_3           3            53
D18V8, multiclass
        clus
vv       GH2 MUTATED GH2 WILD-TYPE
  CLUS_1           2            29
  CLUS_2           2            16
  CLUS_3           6            82

Clustering(19) Variable = TFEC MUTATION ANALYSIS
D19V1, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            3             19
  CLUS_2            2             22
  CLUS_3            3             37
  CLUS_4            5             46
D19V2, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            5             32
  CLUS_2            4             50
  CLUS_3            4             42
D19V3, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            3             18
  CLUS_2            3             32
  CLUS_3            1             36
D19V4, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            2             14
  CLUS_2            2             24
  CLUS_3            1             32
  CLUS_4            2             16
D19V5, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            5             48
  CLUS_2            4             33
  CLUS_3            4             41
D19V6, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            3             43
  CLUS_2            8             53
  CLUS_3            2             26
D19V7, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            6             46
  CLUS_2            1             28
  CLUS_3            6             50
D19V8, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            1             30
  CLUS_2            1             17
  CLUS_3           11             77

Clustering(20) Variable = IDH1 MUTATION ANALYSIS
D20V1, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1             21
  CLUS_2            0             24
  CLUS_3            3             37
  CLUS_4            3             48
D20V2, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            3             51
  CLUS_3            3             43
D20V3, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             21
  CLUS_2            3             32
  CLUS_3            3             34
D20V4, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             25
  CLUS_3            3             30
  CLUS_4            2             16
D20V5, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1             52
  CLUS_2            2             35
  CLUS_3            4             41
D20V6, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            5             56
  CLUS_3            1             27
D20V7, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            5             47
  CLUS_2            2             27
  CLUS_3            0             56
D20V8, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             31
  CLUS_2            2             16
  CLUS_3            5             83

Clustering(21) Variable = WDR12 MUTATION ANALYSIS
D21V1, multiclass
        clus
vv       WDR12 MUTATED WDR12 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             1              23
  CLUS_3             3              37
  CLUS_4             4              47
D21V2, multiclass
        clus
vv       WDR12 MUTATED WDR12 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             4              50
  CLUS_3             3              43
D21V3, multiclass
        clus
vv       WDR12 MUTATED WDR12 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             3              32
  CLUS_3             3              34
D21V4, multiclass
        clus
vv       WDR12 MUTATED WDR12 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             3              23
  CLUS_3             2              31
  CLUS_4             1              17
D21V5, multiclass
        clus
vv       WDR12 MUTATED WDR12 WILD-TYPE
  CLUS_1             5              48
  CLUS_2             2              35
  CLUS_3             2              43
D21V6, multiclass
        clus
vv       WDR12 MUTATED WDR12 WILD-TYPE
  CLUS_1             6              40
  CLUS_2             3              58
  CLUS_3             0              28
D21V7, multiclass
        clus
vv       WDR12 MUTATED WDR12 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             4              25
  CLUS_3             5              51
D21V8, multiclass
        clus
vv       WDR12 MUTATED WDR12 WILD-TYPE
  CLUS_1             5              26
  CLUS_2             1              17
  CLUS_3             3              85

Clustering(22) Variable = RGS18 MUTATION ANALYSIS
D22V1, multiclass
        clus
vv       RGS18 MUTATED RGS18 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             0              24
  CLUS_3             3              37
  CLUS_4             3              48
D22V2, multiclass
        clus
vv       RGS18 MUTATED RGS18 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             3              51
  CLUS_3             2              44
D22V3, multiclass
        clus
vv       RGS18 MUTATED RGS18 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1              34
  CLUS_3             1              36
D22V4, multiclass
        clus
vv       RGS18 MUTATED RGS18 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              25
  CLUS_3             1              32
  CLUS_4             0              18
D22V5, multiclass
        clus
vv       RGS18 MUTATED RGS18 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             1              36
  CLUS_3             3              42
D22V6, multiclass
        clus
vv       RGS18 MUTATED RGS18 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             3              58
  CLUS_3             2              26
D22V7, multiclass
        clus
vv       RGS18 MUTATED RGS18 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             0              29
  CLUS_3             5              51
D22V8, multiclass
        clus
vv       RGS18 MUTATED RGS18 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             0              18
  CLUS_3             5              83

Clustering(23) Variable = POF1B MUTATION ANALYSIS
D23V1, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             6              16
  CLUS_2             2              22
  CLUS_3             2              38
  CLUS_4             7              44
D23V2, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             8              29
  CLUS_2             4              50
  CLUS_3             5              41
D23V3, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             3              18
  CLUS_2             4              31
  CLUS_3             2              35
D23V4, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             2              14
  CLUS_2             4              22
  CLUS_3             2              31
  CLUS_4             1              17
D23V5, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             6              47
  CLUS_2             3              34
  CLUS_3             8              37
D23V6, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             5              41
  CLUS_2             8              53
  CLUS_3             4              24
D23V7, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             8              44
  CLUS_2             4              25
  CLUS_3             5              51
D23V8, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             2              29
  CLUS_2             3              15
  CLUS_3            12              76

Clustering(24) Variable = OR5AC2 MUTATION ANALYSIS
D24V1, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              1               21
  CLUS_2              3               21
  CLUS_3              5               35
  CLUS_4              7               44
D24V2, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              4               33
  CLUS_2              8               46
  CLUS_3              4               42
D24V3, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              7               28
  CLUS_3              3               34
D24V4, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              4               22
  CLUS_3              4               29
  CLUS_4              2               16
D24V5, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              8               45
  CLUS_2              5               32
  CLUS_3              3               42
D24V6, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              7               39
  CLUS_2              8               53
  CLUS_3              1               27
D24V7, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              6               46
  CLUS_2              4               25
  CLUS_3              6               50
D24V8, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              3               28
  CLUS_2              2               16
  CLUS_3             11               77

Clustering(25) Variable = VEGFC MUTATION ANALYSIS
D25V1, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             1              21
  CLUS_2             4              20
  CLUS_3             2              38
  CLUS_4             6              45
D25V2, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             2              35
  CLUS_2             7              47
  CLUS_3             4              42
D25V3, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             1              20
  CLUS_2             4              31
  CLUS_3             4              33
D25V4, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              25
  CLUS_3             2              31
  CLUS_4             6              12
D25V5, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             1              52
  CLUS_2             6              31
  CLUS_3             6              39
D25V6, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             1              45
  CLUS_2            11              50
  CLUS_3             1              27
D25V7, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             9              43
  CLUS_2             1              28
  CLUS_3             3              53
D25V8, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             0              31
  CLUS_2             1              17
  CLUS_3            12              76

Clustering(26) Variable = RERG MUTATION ANALYSIS
D26V1, multiclass
        clus
vv       RERG MUTATED RERG WILD-TYPE
  CLUS_1            0             22
  CLUS_2            1             23
  CLUS_3            3             37
  CLUS_4            5             46
D26V2, multiclass
        clus
vv       RERG MUTATED RERG WILD-TYPE
  CLUS_1            2             35
  CLUS_2            5             49
  CLUS_3            2             44
D26V3, multiclass
        clus
vv       RERG MUTATED RERG WILD-TYPE
  CLUS_1            0             21
  CLUS_2            5             30
  CLUS_3            2             35
D26V4, multiclass
        clus
vv       RERG MUTATED RERG WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             24
  CLUS_3            1             32
  CLUS_4            4             14
D26V5, multiclass
        clus
vv       RERG MUTATED RERG WILD-TYPE
  CLUS_1            3             50
  CLUS_2            4             33
  CLUS_3            2             43
D26V6, multiclass
        clus
vv       RERG MUTATED RERG WILD-TYPE
  CLUS_1            3             43
  CLUS_2            6             55
  CLUS_3            0             28
D26V7, multiclass
        clus
vv       RERG MUTATED RERG WILD-TYPE
  CLUS_1            6             46
  CLUS_2            0             29
  CLUS_3            3             53
D26V8, multiclass
        clus
vv       RERG MUTATED RERG WILD-TYPE
  CLUS_1            1             30
  CLUS_2            0             18
  CLUS_3            8             80

Clustering(27) Variable = CCNE2 MUTATION ANALYSIS
D27V1, multiclass
        clus
vv       CCNE2 MUTATED CCNE2 WILD-TYPE
  CLUS_1             2              20
  CLUS_2             0              24
  CLUS_3             4              36
  CLUS_4             4              47
D27V2, multiclass
        clus
vv       CCNE2 MUTATED CCNE2 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             3              51
  CLUS_3             3              43
D27V3, multiclass
        clus
vv       CCNE2 MUTATED CCNE2 WILD-TYPE
  CLUS_1             0              21
  CLUS_2             3              32
  CLUS_3             5              32
D27V4, multiclass
        clus
vv       CCNE2 MUTATED CCNE2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              25
  CLUS_3             6              27
  CLUS_4             1              17
D27V5, multiclass
        clus
vv       CCNE2 MUTATED CCNE2 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             3              34
  CLUS_3             4              41
D27V6, multiclass
        clus
vv       CCNE2 MUTATED CCNE2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             4              57
  CLUS_3             3              25
D27V7, multiclass
        clus
vv       CCNE2 MUTATED CCNE2 WILD-TYPE
  CLUS_1             8              44
  CLUS_2             1              28
  CLUS_3             1              55
D27V8, multiclass
        clus
vv       CCNE2 MUTATED CCNE2 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             0              18
  CLUS_3             8              80

Clustering(28) Variable = GPR141 MUTATION ANALYSIS
D28V1, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              1               21
  CLUS_2              1               23
  CLUS_3              3               37
  CLUS_4              7               44
D28V2, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              4               33
  CLUS_2              8               46
  CLUS_3              0               46
D28V3, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              6               15
  CLUS_2              0               35
  CLUS_3              3               34
D28V4, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              5               11
  CLUS_2              0               26
  CLUS_3              2               31
  CLUS_4              2               16
D28V5, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              4               49
  CLUS_2              5               32
  CLUS_3              3               42
D28V6, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              6               40
  CLUS_2              5               56
  CLUS_3              1               27
D28V7, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              1               28
  CLUS_3              8               48
D28V8, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              4               27
  CLUS_2              1               17
  CLUS_3              7               81

Clustering(29) Variable = GK2 MUTATION ANALYSIS
D29V1, multiclass
        clus
vv       GK2 MUTATED GK2 WILD-TYPE
  CLUS_1           1            21
  CLUS_2           5            19
  CLUS_3           5            35
  CLUS_4           6            45
D29V2, multiclass
        clus
vv       GK2 MUTATED GK2 WILD-TYPE
  CLUS_1           6            31
  CLUS_2           6            48
  CLUS_3           5            41
D29V3, multiclass
        clus
vv       GK2 MUTATED GK2 WILD-TYPE
  CLUS_1           3            18
  CLUS_2           6            29
  CLUS_3           4            33
D29V4, multiclass
        clus
vv       GK2 MUTATED GK2 WILD-TYPE
  CLUS_1           2            14
  CLUS_2           4            22
  CLUS_3           5            28
  CLUS_4           2            16
D29V5, multiclass
        clus
vv       GK2 MUTATED GK2 WILD-TYPE
  CLUS_1           8            45
  CLUS_2           4            33
  CLUS_3           5            40
D29V6, multiclass
        clus
vv       GK2 MUTATED GK2 WILD-TYPE
  CLUS_1           8            38
  CLUS_2           7            54
  CLUS_3           2            26
D29V7, multiclass
        clus
vv       GK2 MUTATED GK2 WILD-TYPE
  CLUS_1           6            46
  CLUS_2           2            27
  CLUS_3           9            47
D29V8, multiclass
        clus
vv       GK2 MUTATED GK2 WILD-TYPE
  CLUS_1           5            26
  CLUS_2           2            16
  CLUS_3          10            78

Clustering(30) Variable = NAP1L2 MUTATION ANALYSIS
D30V1, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1               21
  CLUS_2              1               23
  CLUS_3              5               35
  CLUS_4              5               46
D30V2, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              5               32
  CLUS_2              5               49
  CLUS_3              2               44
D30V3, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2               19
  CLUS_2              2               33
  CLUS_3              4               33
D30V4, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              0               26
  CLUS_3              4               29
  CLUS_4              3               15
D30V5, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              4               33
  CLUS_3              5               40
D30V6, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              6               55
  CLUS_3              3               25
D30V7, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              6               46
  CLUS_2              1               28
  CLUS_3              5               51
D30V8, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              3               28
  CLUS_2              1               17
  CLUS_3              8               80

Clustering(31) Variable = SNAP91 MUTATION ANALYSIS
D31V1, multiclass
        clus
vv       SNAP91 MUTATED SNAP91 WILD-TYPE
  CLUS_1              2               20
  CLUS_2              2               22
  CLUS_3              5               35
  CLUS_4              9               42
D31V2, multiclass
        clus
vv       SNAP91 MUTATED SNAP91 WILD-TYPE
  CLUS_1              6               31
  CLUS_2              5               49
  CLUS_3              7               39
D31V3, multiclass
        clus
vv       SNAP91 MUTATED SNAP91 WILD-TYPE
  CLUS_1              4               17
  CLUS_2              5               30
  CLUS_3              5               32
D31V4, multiclass
        clus
vv       SNAP91 MUTATED SNAP91 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              5               21
  CLUS_3              5               28
  CLUS_4              1               17
D31V5, multiclass
        clus
vv       SNAP91 MUTATED SNAP91 WILD-TYPE
  CLUS_1              8               45
  CLUS_2              3               34
  CLUS_3              7               38
D31V6, multiclass
        clus
vv       SNAP91 MUTATED SNAP91 WILD-TYPE
  CLUS_1              7               39
  CLUS_2              6               55
  CLUS_3              5               23
D31V7, multiclass
        clus
vv       SNAP91 MUTATED SNAP91 WILD-TYPE
  CLUS_1              6               46
  CLUS_2              4               25
  CLUS_3              8               48
D31V8, multiclass
        clus
vv       SNAP91 MUTATED SNAP91 WILD-TYPE
  CLUS_1              6               25
  CLUS_2              3               15
  CLUS_3              9               79

Clustering(32) Variable = PRB2 MUTATION ANALYSIS
D32V1, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            4             18
  CLUS_2            3             21
  CLUS_3            3             37
  CLUS_4           10             41
D32V2, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            6             31
  CLUS_2            8             46
  CLUS_3            6             40
D32V3, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2             19
  CLUS_2            5             30
  CLUS_3            7             30
D32V4, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            4             22
  CLUS_3            5             28
  CLUS_4            3             15
D32V5, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            3             50
  CLUS_2            8             29
  CLUS_3            9             36
D32V6, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            4             42
  CLUS_2           13             48
  CLUS_3            3             25
D32V7, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1           15             37
  CLUS_2            1             28
  CLUS_3            4             52
D32V8, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            1             30
  CLUS_2            1             17
  CLUS_3           18             70

Clustering(33) Variable = TLL1 MUTATION ANALYSIS
D33V1, multiclass
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1            4             18
  CLUS_2            3             21
  CLUS_3            8             32
  CLUS_4           12             39
D33V2, multiclass
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1            5             32
  CLUS_2           14             40
  CLUS_3            8             38
D33V3, multiclass
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1            5             16
  CLUS_2            6             29
  CLUS_3            9             28
D33V4, multiclass
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1            5             11
  CLUS_2            2             24
  CLUS_3            8             25
  CLUS_4            5             13
D33V5, multiclass
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1            6             47
  CLUS_2            8             29
  CLUS_3           13             32
D33V6, multiclass
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1            5             41
  CLUS_2           18             43
  CLUS_3            4             24
D33V7, multiclass
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1           12             40
  CLUS_2            7             22
  CLUS_3            8             48
D33V8, multiclass
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  CLUS_1            4             27
  CLUS_2            5             13
  CLUS_3           18             70

Clustering(34) Variable = HBD MUTATION ANALYSIS
D34V1, multiclass
        clus
vv       HBD MUTATED HBD WILD-TYPE
  CLUS_1           1            21
  CLUS_2           3            21
  CLUS_3           2            38
  CLUS_4           2            49
D34V2, multiclass
        clus
vv       HBD MUTATED HBD WILD-TYPE
  CLUS_1           1            36
  CLUS_2           4            50
  CLUS_3           3            43
D34V3, multiclass
        clus
vv       HBD MUTATED HBD WILD-TYPE
  CLUS_1           1            20
  CLUS_2           2            33
  CLUS_3           3            34
D34V4, multiclass
        clus
vv       HBD MUTATED HBD WILD-TYPE
  CLUS_1           1            15
  CLUS_2           0            26
  CLUS_3           2            31
  CLUS_4           3            15
D34V5, multiclass
        clus
vv       HBD MUTATED HBD WILD-TYPE
  CLUS_1           1            52
  CLUS_2           4            33
  CLUS_3           3            42
D34V6, multiclass
        clus
vv       HBD MUTATED HBD WILD-TYPE
  CLUS_1           0            46
  CLUS_2           5            56
  CLUS_3           3            25
D34V7, multiclass
        clus
vv       HBD MUTATED HBD WILD-TYPE
  CLUS_1           6            46
  CLUS_2           0            29
  CLUS_3           2            54
D34V8, multiclass
        clus
vv       HBD MUTATED HBD WILD-TYPE
  CLUS_1           0            31
  CLUS_2           0            18
  CLUS_3           8            80

Clustering(35) Variable = GRXCR2 MUTATION ANALYSIS
D35V1, multiclass
        clus
vv       GRXCR2 MUTATED GRXCR2 WILD-TYPE
  CLUS_1              2               20
  CLUS_2              2               22
  CLUS_3              2               38
  CLUS_4              5               46
D35V2, multiclass
        clus
vv       GRXCR2 MUTATED GRXCR2 WILD-TYPE
  CLUS_1              3               34
  CLUS_2              4               50
  CLUS_3              4               42
D35V3, multiclass
        clus
vv       GRXCR2 MUTATED GRXCR2 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              4               31
  CLUS_3              1               36
D35V4, multiclass
        clus
vv       GRXCR2 MUTATED GRXCR2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               24
  CLUS_3              1               32
  CLUS_4              2               16
D35V5, multiclass
        clus
vv       GRXCR2 MUTATED GRXCR2 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              3               34
  CLUS_3              5               40
D35V6, multiclass
        clus
vv       GRXCR2 MUTATED GRXCR2 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              7               54
  CLUS_3              2               26
D35V7, multiclass
        clus
vv       GRXCR2 MUTATED GRXCR2 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              3               26
  CLUS_3              3               53
D35V8, multiclass
        clus
vv       GRXCR2 MUTATED GRXCR2 WILD-TYPE
  CLUS_1              2               29
  CLUS_2              2               16
  CLUS_3              7               81

Clustering(36) Variable = NOTCH2NL MUTATION ANALYSIS
D36V1, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                1                 21
  CLUS_2                2                 22
  CLUS_3                5                 35
  CLUS_4                1                 50
D36V2, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                3                 34
  CLUS_2                2                 52
  CLUS_3                4                 42
D36V3, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                3                 18
  CLUS_2                1                 34
  CLUS_3                1                 36
D36V4, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                1                 25
  CLUS_3                1                 32
  CLUS_4                0                 18
D36V5, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                7                 46
  CLUS_2                0                 37
  CLUS_3                2                 43
D36V6, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                5                 41
  CLUS_2                2                 59
  CLUS_3                2                 26
D36V7, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                2                 27
  CLUS_3                5                 51
D36V8, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                5                 26
  CLUS_2                1                 17
  CLUS_3                3                 85

Clustering(37) Variable = OXA1L MUTATION ANALYSIS
D37V1, multiclass
        clus
vv       OXA1L MUTATED OXA1L WILD-TYPE
  CLUS_1             0              22
  CLUS_2             1              23
  CLUS_3             2              38
  CLUS_4             1              50
D37V2, multiclass
        clus
vv       OXA1L MUTATED OXA1L WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              54
  CLUS_3             2              44
D37V3, multiclass
[1] "Remove cluster labels:" "OXA1L MUTATED"         
clus
  OXA1L MUTATED OXA1L WILD-TYPE 
              2              91 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A2JD      TCGA-D3-A3CE      TCGA-D9-A148      TCGA-D9-A149 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-EE-A17X      TCGA-EE-A185 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29E      TCGA-EE-A29H 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29R 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29S      TCGA-EE-A2A0      TCGA-EE-A2A2      TCGA-EE-A2A6 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GC      TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GK 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GT      TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2MI 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MJ      TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MN      TCGA-EE-A2MP      TCGA-EE-A2MR      TCGA-EE-A2MT 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB      TCGA-EE-A3AC 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF      TCGA-EE-A3AG 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J      TCGA-ER-A19L 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19N      TCGA-ER-A19O      TCGA-ER-A1A1      TCGA-FS-A1YW 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1Z4      TCGA-FS-A1ZD      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZM      TCGA-FS-A1ZP      TCGA-GN-A261      TCGA-GN-A262 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
D37V4, multiclass
[1] "Remove cluster labels:" "OXA1L MUTATED"         
clus
  OXA1L MUTATED OXA1L WILD-TYPE 
              2              91 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A2JD      TCGA-D3-A3CE      TCGA-D9-A148      TCGA-D9-A149 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I2      TCGA-DA-A1I4      TCGA-DA-A1I8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-EE-A17X      TCGA-EE-A185 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A20F      TCGA-EE-A29C      TCGA-EE-A29E      TCGA-EE-A29H 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29L      TCGA-EE-A29N      TCGA-EE-A29P      TCGA-EE-A29R 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29S      TCGA-EE-A2A0      TCGA-EE-A2A2      TCGA-EE-A2A6 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GC      TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GK 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GT      TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2MI 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MJ      TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MN      TCGA-EE-A2MP      TCGA-EE-A2MR      TCGA-EE-A2MT 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB      TCGA-EE-A3AC 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF      TCGA-EE-A3AG 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19D      TCGA-ER-A19F      TCGA-ER-A19J      TCGA-ER-A19L 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19N      TCGA-ER-A19O      TCGA-ER-A1A1      TCGA-FS-A1YW 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1Z4      TCGA-FS-A1ZD      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZM      TCGA-FS-A1ZP      TCGA-GN-A261      TCGA-GN-A262 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A264      TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A268      TCGA-GN-A26A      TCGA-GN-A26D 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
D37V5, multiclass
        clus
vv       OXA1L MUTATED OXA1L WILD-TYPE
  CLUS_1             1              52
  CLUS_2             1              36
  CLUS_3             2              43
D37V6, multiclass
        clus
vv       OXA1L MUTATED OXA1L WILD-TYPE
  CLUS_1             1              45
  CLUS_2             3              58
  CLUS_3             0              28
D37V7, multiclass
        clus
vv       OXA1L MUTATED OXA1L WILD-TYPE
  CLUS_1             2              50
  CLUS_2             1              28
  CLUS_3             1              55
D37V8, multiclass
        clus
vv       OXA1L MUTATED OXA1L WILD-TYPE
  CLUS_1             0              31
  CLUS_2             1              17
  CLUS_3             3              85

Clustering(38) Variable = AREG MUTATION ANALYSIS
D38V1, multiclass
        clus
vv       AREG MUTATED AREG WILD-TYPE
  CLUS_1            2             20
  CLUS_2            1             23
  CLUS_3            1             39
  CLUS_4            2             49
D38V2, multiclass
        clus
vv       AREG MUTATED AREG WILD-TYPE
  CLUS_1            3             34
  CLUS_2            1             53
  CLUS_3            2             44
D38V3, multiclass
        clus
vv       AREG MUTATED AREG WILD-TYPE
  CLUS_1            1             20
  CLUS_2            2             33
  CLUS_3            1             36
D38V4, multiclass
        clus
vv       AREG MUTATED AREG WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             24
  CLUS_3            2             31
  CLUS_4            0             18
D38V5, multiclass
        clus
vv       AREG MUTATED AREG WILD-TYPE
  CLUS_1            3             50
  CLUS_2            1             36
  CLUS_3            2             43
D38V6, multiclass
        clus
vv       AREG MUTATED AREG WILD-TYPE
  CLUS_1            3             43
  CLUS_2            3             58
  CLUS_3            0             28
D38V7, multiclass
        clus
vv       AREG MUTATED AREG WILD-TYPE
  CLUS_1            2             50
  CLUS_2            1             28
  CLUS_3            3             53
D38V8, multiclass
        clus
vv       AREG MUTATED AREG WILD-TYPE
  CLUS_1            2             29
  CLUS_2            0             18
  CLUS_3            4             84

Clustering(39) Variable = HBG2 MUTATION ANALYSIS
D39V1, multiclass
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  CLUS_1            1             21
  CLUS_2            2             22
  CLUS_3            0             40
  CLUS_4            3             48
D39V2, multiclass
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            1             53
  CLUS_3            2             44
D39V3, multiclass
[1] "Remove cluster labels:" "HBG2 MUTATED"          
clus
  HBG2 MUTATED HBG2 WILD-TYPE 
             2             91 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A2JD     TCGA-D3-A3CE     TCGA-D9-A148     TCGA-D9-A149 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-EE-A17X     TCGA-EE-A181 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29E 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A2A0     TCGA-EE-A2A2     TCGA-EE-A2A6 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GC     TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GK 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GT     TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2MI 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MJ     TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MN     TCGA-EE-A2MP     TCGA-EE-A2MR     TCGA-EE-A2MS 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A19O     TCGA-ER-A1A1 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1YW     TCGA-FS-A1Z4     TCGA-FS-A1ZD     TCGA-FS-A1ZG 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1ZH     TCGA-FS-A1ZM     TCGA-GN-A261     TCGA-GN-A262 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
D39V4, multiclass
[1] "Remove cluster labels:" "HBG2 MUTATED"          
clus
  HBG2 MUTATED HBG2 WILD-TYPE 
             2             91 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A2JD     TCGA-D3-A3CE     TCGA-D9-A148     TCGA-D9-A149 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I2     TCGA-DA-A1I4     TCGA-DA-A1I8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-EE-A17X     TCGA-EE-A181 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20F     TCGA-EE-A29C     TCGA-EE-A29E 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29N     TCGA-EE-A29P 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29R     TCGA-EE-A2A0     TCGA-EE-A2A2     TCGA-EE-A2A6 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GC     TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GK 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GT     TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2MI 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MJ     TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MN     TCGA-EE-A2MP     TCGA-EE-A2MR     TCGA-EE-A2MS 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-ER-A19D     TCGA-ER-A19F     TCGA-ER-A19J 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A19O     TCGA-ER-A1A1 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1YW     TCGA-FS-A1Z4     TCGA-FS-A1ZD     TCGA-FS-A1ZG 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1ZH     TCGA-FS-A1ZM     TCGA-GN-A261     TCGA-GN-A262 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A264     TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A268     TCGA-GN-A26A     TCGA-GN-A26D 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
D39V5, multiclass
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  CLUS_1            2             51
  CLUS_2            2             35
  CLUS_3            2             43
D39V6, multiclass
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            3             58
  CLUS_3            1             27
D39V7, multiclass
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            1             28
  CLUS_3            4             52
D39V8, multiclass
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  CLUS_1            2             29
  CLUS_2            1             17
  CLUS_3            3             85

Clustering(40) Variable = SERPINB4 MUTATION ANALYSIS
D40V1, multiclass
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  CLUS_1                4                 18
  CLUS_2                2                 22
  CLUS_3                4                 36
  CLUS_4               10                 41
D40V2, multiclass
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  CLUS_1                4                 33
  CLUS_2                8                 46
  CLUS_3                8                 38
D40V3, multiclass
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  CLUS_1                6                 15
  CLUS_2                1                 34
  CLUS_3                7                 30
D40V4, multiclass
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  CLUS_1                6                 10
  CLUS_2                1                 25
  CLUS_3                6                 27
  CLUS_4                1                 17
D40V5, multiclass
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  CLUS_1                6                 47
  CLUS_2                5                 32
  CLUS_3                9                 36
D40V6, multiclass
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  CLUS_1                5                 41
  CLUS_2               12                 49
  CLUS_3                3                 25
D40V7, multiclass
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  CLUS_1                7                 45
  CLUS_2                4                 25
  CLUS_3                9                 47
D40V8, multiclass
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  CLUS_1                5                 26
  CLUS_2                4                 14
  CLUS_3               11                 77

Clustering(41) Variable = SPTLC3 MUTATION ANALYSIS
D41V1, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              2               20
  CLUS_2              2               22
  CLUS_3              4               36
  CLUS_4              6               45
D41V2, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              5               32
  CLUS_2              4               50
  CLUS_3              5               41
D41V3, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              6               29
  CLUS_3              5               32
D41V4, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              4               22
  CLUS_3              4               29
  CLUS_4              3               15
D41V5, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              4               49
  CLUS_2              8               29
  CLUS_3              2               43
D41V6, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              8               53
  CLUS_3              1               27
D41V7, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              8               44
  CLUS_2              1               28
  CLUS_3              5               51
D41V8, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              2               29
  CLUS_2              1               17
  CLUS_3             11               77

Clustering(42) Variable = TAF1A MUTATION ANALYSIS
D42V1, multiclass
        clus
vv       TAF1A MUTATED TAF1A WILD-TYPE
  CLUS_1             1              21
  CLUS_2             2              22
  CLUS_3             3              37
  CLUS_4             3              48
D42V2, multiclass
        clus
vv       TAF1A MUTATED TAF1A WILD-TYPE
  CLUS_1             3              34
  CLUS_2             3              51
  CLUS_3             3              43
D42V3, multiclass
        clus
vv       TAF1A MUTATED TAF1A WILD-TYPE
  CLUS_1             2              19
  CLUS_2             2              33
  CLUS_3             4              33
D42V4, multiclass
        clus
vv       TAF1A MUTATED TAF1A WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              25
  CLUS_3             5              28
  CLUS_4             0              18
D42V5, multiclass
        clus
vv       TAF1A MUTATED TAF1A WILD-TYPE
  CLUS_1             3              50
  CLUS_2             1              36
  CLUS_3             5              40
D42V6, multiclass
        clus
vv       TAF1A MUTATED TAF1A WILD-TYPE
  CLUS_1             3              43
  CLUS_2             3              58
  CLUS_3             3              25
D42V7, multiclass
        clus
vv       TAF1A MUTATED TAF1A WILD-TYPE
  CLUS_1             4              48
  CLUS_2             2              27
  CLUS_3             3              53
D42V8, multiclass
        clus
vv       TAF1A MUTATED TAF1A WILD-TYPE
  CLUS_1             3              28
  CLUS_2             0              18
  CLUS_3             6              82

Clustering(43) Variable = CLVS2 MUTATION ANALYSIS
D43V1, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             0              24
  CLUS_3             5              35
  CLUS_4             7              44
D43V2, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             7              47
  CLUS_3             3              43
D43V3, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             2              33
  CLUS_3             5              32
D43V4, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             2              24
  CLUS_3             3              30
  CLUS_4             2              16
D43V5, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             6              31
  CLUS_3             6              39
D43V6, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             9              52
  CLUS_3             2              26
D43V7, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             2              27
  CLUS_3             5              51
D43V8, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             2              16
  CLUS_3             9              79

Clustering(44) Variable = CCDC102B MUTATION ANALYSIS
D44V1, multiclass
        clus
vv       CCDC102B MUTATED CCDC102B WILD-TYPE
  CLUS_1                2                 20
  CLUS_2                0                 24
  CLUS_3                6                 34
  CLUS_4                7                 44
D44V2, multiclass
        clus
vv       CCDC102B MUTATED CCDC102B WILD-TYPE
  CLUS_1                4                 33
  CLUS_2                7                 47
  CLUS_3                4                 42
D44V3, multiclass
        clus
vv       CCDC102B MUTATED CCDC102B WILD-TYPE
  CLUS_1                5                 16
  CLUS_2                2                 33
  CLUS_3                5                 32
D44V4, multiclass
        clus
vv       CCDC102B MUTATED CCDC102B WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                3                 23
  CLUS_3                4                 29
  CLUS_4                2                 16
D44V5, multiclass
        clus
vv       CCDC102B MUTATED CCDC102B WILD-TYPE
  CLUS_1                6                 47
  CLUS_2                3                 34
  CLUS_3                6                 39
D44V6, multiclass
        clus
vv       CCDC102B MUTATED CCDC102B WILD-TYPE
  CLUS_1                4                 42
  CLUS_2                9                 52
  CLUS_3                2                 26
D44V7, multiclass
        clus
vv       CCDC102B MUTATED CCDC102B WILD-TYPE
  CLUS_1                5                 47
  CLUS_2                4                 25
  CLUS_3                6                 50
D44V8, multiclass
        clus
vv       CCDC102B MUTATED CCDC102B WILD-TYPE
  CLUS_1                4                 27
  CLUS_2                2                 16
  CLUS_3                9                 79

Clustering(45) Variable = OR4N2 MUTATION ANALYSIS
D45V1, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             3              19
  CLUS_2             0              24
  CLUS_3             2              38
  CLUS_4            10              41
D45V2, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             7              47
  CLUS_3             5              41
D45V3, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             3              32
  CLUS_3             7              30
D45V4, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              23
  CLUS_3             6              27
  CLUS_4             1              17
D45V5, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             4              33
  CLUS_3             9              36
D45V6, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2            10              51
  CLUS_3             3              25
D45V7, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             7              45
  CLUS_2             5              24
  CLUS_3             3              53
D45V8, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             2              16
  CLUS_3            12              76

Clustering(46) Variable = OR8D4 MUTATION ANALYSIS
D46V1, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             0              22
  CLUS_2             1              23
  CLUS_3             3              37
  CLUS_4             5              46
D46V2, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             3              51
  CLUS_3             4              42
D46V3, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             0              21
  CLUS_2             4              31
  CLUS_3             0              37
D46V4, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              24
  CLUS_3             1              32
  CLUS_4             1              17
D46V5, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             4              33
  CLUS_3             2              43
D46V6, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             5              56
  CLUS_3             2              26
D46V7, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             1              28
  CLUS_3             3              53
D46V8, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             0              18
  CLUS_3             8              80

Clustering(47) Variable = RBM11 MUTATION ANALYSIS
D47V1, multiclass
        clus
vv       RBM11 MUTATED RBM11 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             0              24
  CLUS_3             4              36
  CLUS_4             5              46
D47V2, multiclass
        clus
vv       RBM11 MUTATED RBM11 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             4              50
  CLUS_3             4              42
D47V3, multiclass
        clus
vv       RBM11 MUTATED RBM11 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1              34
  CLUS_3             5              32
D47V4, multiclass
        clus
vv       RBM11 MUTATED RBM11 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             2              24
  CLUS_3             3              30
  CLUS_4             1              17
D47V5, multiclass
        clus
vv       RBM11 MUTATED RBM11 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             4              33
  CLUS_3             3              42
D47V6, multiclass
        clus
vv       RBM11 MUTATED RBM11 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             6              55
  CLUS_3             1              27
D47V7, multiclass
        clus
vv       RBM11 MUTATED RBM11 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             1              28
  CLUS_3             6              50
D47V8, multiclass
        clus
vv       RBM11 MUTATED RBM11 WILD-TYPE
  CLUS_1             3              28
  CLUS_2             0              18
  CLUS_3             7              81

Clustering(48) Variable = DEFB118 MUTATION ANALYSIS
D48V1, multiclass
        clus
vv       DEFB118 MUTATED DEFB118 WILD-TYPE
  CLUS_1               2                20
  CLUS_2               1                23
  CLUS_3               3                37
  CLUS_4               1                50
D48V2, multiclass
        clus
vv       DEFB118 MUTATED DEFB118 WILD-TYPE
  CLUS_1               3                34
  CLUS_2               1                53
  CLUS_3               3                43
D48V3, multiclass
        clus
vv       DEFB118 MUTATED DEFB118 WILD-TYPE
  CLUS_1               2                19
  CLUS_2               2                33
  CLUS_3               1                36
D48V4, multiclass
        clus
vv       DEFB118 MUTATED DEFB118 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               2                24
  CLUS_3               0                33
  CLUS_4               2                16
D48V5, multiclass
        clus
vv       DEFB118 MUTATED DEFB118 WILD-TYPE
  CLUS_1               4                49
  CLUS_2               1                36
  CLUS_3               2                43
D48V6, multiclass
        clus
vv       DEFB118 MUTATED DEFB118 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               5                56
  CLUS_3               0                28
D48V7, multiclass
        clus
vv       DEFB118 MUTATED DEFB118 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               2                27
  CLUS_3               4                52
D48V8, multiclass
        clus
vv       DEFB118 MUTATED DEFB118 WILD-TYPE
  CLUS_1               1                30
  CLUS_2               0                18
  CLUS_3               6                82

Clustering(49) Variable = GRXCR1 MUTATION ANALYSIS
D49V1, multiclass
        clus
vv       GRXCR1 MUTATED GRXCR1 WILD-TYPE
  CLUS_1              3               19
  CLUS_2              3               21
  CLUS_3              2               38
  CLUS_4              5               46
D49V2, multiclass
        clus
vv       GRXCR1 MUTATED GRXCR1 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              4               50
  CLUS_3              7               39
D49V3, multiclass
        clus
vv       GRXCR1 MUTATED GRXCR1 WILD-TYPE
  CLUS_1              2               19
  CLUS_2              4               31
  CLUS_3              4               33
D49V4, multiclass
        clus
vv       GRXCR1 MUTATED GRXCR1 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              1               25
  CLUS_3              5               28
  CLUS_4              2               16
D49V5, multiclass
        clus
vv       GRXCR1 MUTATED GRXCR1 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              6               31
  CLUS_3              4               41
D49V6, multiclass
        clus
vv       GRXCR1 MUTATED GRXCR1 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              7               54
  CLUS_3              2               26
D49V7, multiclass
        clus
vv       GRXCR1 MUTATED GRXCR1 WILD-TYPE
  CLUS_1              7               45
  CLUS_2              3               26
  CLUS_3              3               53
D49V8, multiclass
        clus
vv       GRXCR1 MUTATED GRXCR1 WILD-TYPE
  CLUS_1              2               29
  CLUS_2              3               15
  CLUS_3              8               80

Clustering(50) Variable = RGPD3 MUTATION ANALYSIS
D50V1, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             4              18
  CLUS_2             1              23
  CLUS_3             7              33
  CLUS_4            10              41
D50V2, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             5              32
  CLUS_2            10              44
  CLUS_3             7              39
D50V3, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             7              28
  CLUS_3             6              31
D50V4, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             6              20
  CLUS_3             5              28
  CLUS_4             2              16
D50V5, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             5              48
  CLUS_2             7              30
  CLUS_3            10              35
D50V6, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             5              41
  CLUS_2            11              50
  CLUS_3             6              22
D50V7, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             9              43
  CLUS_2             6              23
  CLUS_3             7              49
D50V8, multiclass
        clus
vv       RGPD3 MUTATED RGPD3 WILD-TYPE
  CLUS_1             4              27
  CLUS_2             4              14
  CLUS_3            14              74

Clustering(51) Variable = CA1 MUTATION ANALYSIS
D51V1, multiclass
        clus
vv       CA1 MUTATED CA1 WILD-TYPE
  CLUS_1           2            20
  CLUS_2           3            21
  CLUS_3           2            38
  CLUS_4           1            50
D51V2, multiclass
        clus
vv       CA1 MUTATED CA1 WILD-TYPE
  CLUS_1           3            34
  CLUS_2           1            53
  CLUS_3           4            42
D51V3, multiclass
        clus
vv       CA1 MUTATED CA1 WILD-TYPE
  CLUS_1           0            21
  CLUS_2           5            30
  CLUS_3           0            37
D51V4, multiclass
        clus
vv       CA1 MUTATED CA1 WILD-TYPE
  CLUS_1           0            16
  CLUS_2           3            23
  CLUS_3           1            32
  CLUS_4           1            17
D51V5, multiclass
        clus
vv       CA1 MUTATED CA1 WILD-TYPE
  CLUS_1           5            48
  CLUS_2           0            37
  CLUS_3           3            42
D51V6, multiclass
        clus
vv       CA1 MUTATED CA1 WILD-TYPE
  CLUS_1           4            42
  CLUS_2           3            58
  CLUS_3           1            27
D51V7, multiclass
        clus
vv       CA1 MUTATED CA1 WILD-TYPE
  CLUS_1           3            49
  CLUS_2           4            25
  CLUS_3           1            55
D51V8, multiclass
        clus
vv       CA1 MUTATED CA1 WILD-TYPE
  CLUS_1           2            29
  CLUS_2           3            15
  CLUS_3           3            85

Clustering(52) Variable = HNF4G MUTATION ANALYSIS
D52V1, multiclass
        clus
vv       HNF4G MUTATED HNF4G WILD-TYPE
  CLUS_1             2              20
  CLUS_2             1              23
  CLUS_3             4              36
  CLUS_4             8              43
D52V2, multiclass
        clus
vv       HNF4G MUTATED HNF4G WILD-TYPE
  CLUS_1             3              34
  CLUS_2             9              45
  CLUS_3             3              43
D52V3, multiclass
        clus
vv       HNF4G MUTATED HNF4G WILD-TYPE
  CLUS_1             2              19
  CLUS_2             4              31
  CLUS_3             5              32
D52V4, multiclass
        clus
vv       HNF4G MUTATED HNF4G WILD-TYPE
  CLUS_1             2              14
  CLUS_2             2              24
  CLUS_3             5              28
  CLUS_4             2              16
D52V5, multiclass
        clus
vv       HNF4G MUTATED HNF4G WILD-TYPE
  CLUS_1             5              48
  CLUS_2             4              33
  CLUS_3             6              39
D52V6, multiclass
        clus
vv       HNF4G MUTATED HNF4G WILD-TYPE
  CLUS_1             4              42
  CLUS_2             8              53
  CLUS_3             3              25
D52V7, multiclass
        clus
vv       HNF4G MUTATED HNF4G WILD-TYPE
  CLUS_1             8              44
  CLUS_2             2              27
  CLUS_3             5              51
D52V8, multiclass
        clus
vv       HNF4G MUTATED HNF4G WILD-TYPE
  CLUS_1             1              30
  CLUS_2             1              17
  CLUS_3            13              75

Clustering(53) Variable = ACTL7B MUTATION ANALYSIS
D53V1, multiclass
        clus
vv       ACTL7B MUTATED ACTL7B WILD-TYPE
  CLUS_1              1               21
  CLUS_2              1               23
  CLUS_3              1               39
  CLUS_4              5               46
D53V2, multiclass
        clus
vv       ACTL7B MUTATED ACTL7B WILD-TYPE
  CLUS_1              2               35
  CLUS_2              2               52
  CLUS_3              4               42
D53V3, multiclass
        clus
vv       ACTL7B MUTATED ACTL7B WILD-TYPE
  CLUS_1              2               19
  CLUS_2              4               31
  CLUS_3              1               36
D53V4, multiclass
        clus
vv       ACTL7B MUTATED ACTL7B WILD-TYPE
  CLUS_1              1               15
  CLUS_2              4               22
  CLUS_3              0               33
  CLUS_4              2               16
D53V5, multiclass
        clus
vv       ACTL7B MUTATED ACTL7B WILD-TYPE
  CLUS_1              5               48
  CLUS_2              1               36
  CLUS_3              2               43
D53V6, multiclass
        clus
vv       ACTL7B MUTATED ACTL7B WILD-TYPE
  CLUS_1              3               43
  CLUS_2              5               56
  CLUS_3              0               28
D53V7, multiclass
        clus
vv       ACTL7B MUTATED ACTL7B WILD-TYPE
  CLUS_1              3               49
  CLUS_2              3               26
  CLUS_3              2               54
D53V8, multiclass
        clus
vv       ACTL7B MUTATED ACTL7B WILD-TYPE
  CLUS_1              1               30
  CLUS_2              2               16
  CLUS_3              5               83

Clustering(54) Variable = SPAG16 MUTATION ANALYSIS
D54V1, multiclass
        clus
vv       SPAG16 MUTATED SPAG16 WILD-TYPE
  CLUS_1              1               21
  CLUS_2              3               21
  CLUS_3              2               38
  CLUS_4              6               45
D54V2, multiclass
        clus
vv       SPAG16 MUTATED SPAG16 WILD-TYPE
  CLUS_1              5               32
  CLUS_2              4               50
  CLUS_3              3               43
D54V3, multiclass
        clus
vv       SPAG16 MUTATED SPAG16 WILD-TYPE
  CLUS_1              2               19
  CLUS_2              3               32
  CLUS_3              2               35
D54V4, multiclass
        clus
vv       SPAG16 MUTATED SPAG16 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              2               24
  CLUS_3              2               31
  CLUS_4              1               17
D54V5, multiclass
        clus
vv       SPAG16 MUTATED SPAG16 WILD-TYPE
  CLUS_1              6               47
  CLUS_2              2               35
  CLUS_3              4               41
D54V6, multiclass
        clus
vv       SPAG16 MUTATED SPAG16 WILD-TYPE
  CLUS_1              6               40
  CLUS_2              4               57
  CLUS_3              2               26
D54V7, multiclass
        clus
vv       SPAG16 MUTATED SPAG16 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              0               29
  CLUS_3              7               49
D54V8, multiclass
        clus
vv       SPAG16 MUTATED SPAG16 WILD-TYPE
  CLUS_1              4               27
  CLUS_2              0               18
  CLUS_3              8               80

Clustering(55) Variable = PCDHB8 MUTATION ANALYSIS
D55V1, multiclass
        clus
vv       PCDHB8 MUTATED PCDHB8 WILD-TYPE
  CLUS_1              0               22
  CLUS_2              4               20
  CLUS_3              7               33
  CLUS_4             12               39
D55V2, multiclass
        clus
vv       PCDHB8 MUTATED PCDHB8 WILD-TYPE
  CLUS_1             11               26
  CLUS_2              7               47
  CLUS_3              5               41
D55V3, multiclass
        clus
vv       PCDHB8 MUTATED PCDHB8 WILD-TYPE
  CLUS_1              3               18
  CLUS_2              9               26
  CLUS_3              4               33
D55V4, multiclass
        clus
vv       PCDHB8 MUTATED PCDHB8 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              6               20
  CLUS_3              5               28
  CLUS_4              2               16
D55V5, multiclass
        clus
vv       PCDHB8 MUTATED PCDHB8 WILD-TYPE
  CLUS_1             12               41
  CLUS_2              4               33
  CLUS_3              7               38
D55V6, multiclass
        clus
vv       PCDHB8 MUTATED PCDHB8 WILD-TYPE
  CLUS_1             11               35
  CLUS_2              7               54
  CLUS_3              5               23
D55V7, multiclass
        clus
vv       PCDHB8 MUTATED PCDHB8 WILD-TYPE
  CLUS_1             13               39
  CLUS_2              2               27
  CLUS_3              8               48
D55V8, multiclass
        clus
vv       PCDHB8 MUTATED PCDHB8 WILD-TYPE
  CLUS_1              5               26
  CLUS_2              2               16
  CLUS_3             16               72

Clustering(56) Variable = HIST1H2AA MUTATION ANALYSIS
D56V1, multiclass
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 1                  21
  CLUS_2                 0                  24
  CLUS_3                 3                  37
  CLUS_4                 1                  50
D56V2, multiclass
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 1                  36
  CLUS_2                 1                  53
  CLUS_3                 3                  43
D56V3, multiclass
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 1                  20
  CLUS_2                 2                  33
  CLUS_3                 1                  36
D56V4, multiclass
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 1                  15
  CLUS_2                 0                  26
  CLUS_3                 2                  31
  CLUS_4                 1                  17
D56V5, multiclass
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 2                  51
  CLUS_2                 0                  37
  CLUS_3                 3                  42
D56V6, multiclass
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 3                  43
  CLUS_2                 1                  60
  CLUS_3                 1                  27
D56V7, multiclass
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 3                  49
  CLUS_2                 1                  28
  CLUS_3                 1                  55
D56V8, multiclass
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  CLUS_1                 1                  30
  CLUS_2                 1                  17
  CLUS_3                 3                  85

Clustering(57) Variable = OR10K2 MUTATION ANALYSIS
D57V1, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              2               20
  CLUS_2              2               22
  CLUS_3              4               36
  CLUS_4              6               45
D57V2, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              4               33
  CLUS_2              6               48
  CLUS_3              4               42
D57V3, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              3               18
  CLUS_2              5               30
  CLUS_3              3               34
D57V4, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              4               22
  CLUS_3              3               30
  CLUS_4              1               17
D57V5, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              4               49
  CLUS_2              4               33
  CLUS_3              6               39
D57V6, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              8               53
  CLUS_3              2               26
D57V7, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              1               28
  CLUS_3              8               48
D57V8, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              4               27
  CLUS_2              0               18
  CLUS_3             10               78

Clustering(58) Variable = PHGDH MUTATION ANALYSIS
D58V1, multiclass
        clus
vv       PHGDH MUTATED PHGDH WILD-TYPE
  CLUS_1             0              22
  CLUS_2             1              23
  CLUS_3             3              37
  CLUS_4             4              47
D58V2, multiclass
        clus
vv       PHGDH MUTATED PHGDH WILD-TYPE
  CLUS_1             3              34
  CLUS_2             3              51
  CLUS_3             2              44
D58V3, multiclass
        clus
vv       PHGDH MUTATED PHGDH WILD-TYPE
  CLUS_1             1              20
  CLUS_2             4              31
  CLUS_3             2              35
D58V4, multiclass
        clus
vv       PHGDH MUTATED PHGDH WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              22
  CLUS_3             2              31
  CLUS_4             0              18
D58V5, multiclass
        clus
vv       PHGDH MUTATED PHGDH WILD-TYPE
  CLUS_1             2              51
  CLUS_2             2              35
  CLUS_3             4              41
D58V6, multiclass
        clus
vv       PHGDH MUTATED PHGDH WILD-TYPE
  CLUS_1             3              43
  CLUS_2             4              57
  CLUS_3             1              27
D58V7, multiclass
        clus
vv       PHGDH MUTATED PHGDH WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              26
  CLUS_3             3              53
D58V8, multiclass
        clus
vv       PHGDH MUTATED PHGDH WILD-TYPE
  CLUS_1             2              29
  CLUS_2             2              16
  CLUS_3             4              84

Clustering(59) Variable = OR9K2 MUTATION ANALYSIS
D59V1, multiclass
        clus
vv       OR9K2 MUTATED OR9K2 WILD-TYPE
  CLUS_1             0              22
  CLUS_2             1              23
  CLUS_3             4              36
  CLUS_4             6              45
D59V2, multiclass
        clus
vv       OR9K2 MUTATED OR9K2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             4              50
  CLUS_3             4              42
D59V3, multiclass
        clus
vv       OR9K2 MUTATED OR9K2 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             1              34
  CLUS_3             7              30
D59V4, multiclass
        clus
vv       OR9K2 MUTATED OR9K2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             0              26
  CLUS_3             6              27
  CLUS_4             2              16
D59V5, multiclass
        clus
vv       OR9K2 MUTATED OR9K2 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             3              34
  CLUS_3             6              39
D59V6, multiclass
        clus
vv       OR9K2 MUTATED OR9K2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             6              55
  CLUS_3             3              25
D59V7, multiclass
        clus
vv       OR9K2 MUTATED OR9K2 WILD-TYPE
  CLUS_1             7              45
  CLUS_2             1              28
  CLUS_3             3              53
D59V8, multiclass
        clus
vv       OR9K2 MUTATED OR9K2 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             1              17
  CLUS_3             8              80

Clustering(60) Variable = LIN7A MUTATION ANALYSIS
D60V1, multiclass
        clus
vv       LIN7A MUTATED LIN7A WILD-TYPE
  CLUS_1             3              19
  CLUS_2             0              24
  CLUS_3             2              38
  CLUS_4             3              48
D60V2, multiclass
        clus
vv       LIN7A MUTATED LIN7A WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              53
  CLUS_3             6              40
D60V3, multiclass
        clus
vv       LIN7A MUTATED LIN7A WILD-TYPE
  CLUS_1             0              21
  CLUS_2             2              33
  CLUS_3             3              34
D60V4, multiclass
        clus
vv       LIN7A MUTATED LIN7A WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              24
  CLUS_3             2              31
  CLUS_4             1              17
D60V5, multiclass
        clus
vv       LIN7A MUTATED LIN7A WILD-TYPE
  CLUS_1             1              52
  CLUS_2             3              34
  CLUS_3             4              41
D60V6, multiclass
        clus
vv       LIN7A MUTATED LIN7A WILD-TYPE
  CLUS_1             1              45
  CLUS_2             5              56
  CLUS_3             2              26
D60V7, multiclass
        clus
vv       LIN7A MUTATED LIN7A WILD-TYPE
  CLUS_1             5              47
  CLUS_2             2              27
  CLUS_3             1              55
D60V8, multiclass
        clus
vv       LIN7A MUTATED LIN7A WILD-TYPE
  CLUS_1             1              30
  CLUS_2             1              17
  CLUS_3             6              82

Clustering(61) Variable = USP17L2 MUTATION ANALYSIS
D61V1, multiclass
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               1                21
  CLUS_2               1                23
  CLUS_3               4                36
  CLUS_4               7                44
D61V2, multiclass
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               3                34
  CLUS_2               7                47
  CLUS_3               3                43
D61V3, multiclass
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               3                18
  CLUS_2               5                30
  CLUS_3               2                35
D61V4, multiclass
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               3                13
  CLUS_2               4                22
  CLUS_3               1                32
  CLUS_4               2                16
D61V5, multiclass
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               5                48
  CLUS_2               5                32
  CLUS_3               3                42
D61V6, multiclass
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               6                40
  CLUS_2               6                55
  CLUS_3               1                27
D61V7, multiclass
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               2                27
  CLUS_3               7                49
D61V8, multiclass
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               4                27
  CLUS_2               2                16
  CLUS_3               7                81

Clustering(62) Variable = ANKRD20A4 MUTATION ANALYSIS
D62V1, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 0                  22
  CLUS_2                 0                  24
  CLUS_3                 1                  39
  CLUS_4                 3                  48
D62V2, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 1                  36
  CLUS_2                 3                  51
  CLUS_3                 0                  46
D62V3, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 2                  19
  CLUS_2                 1                  34
  CLUS_3                 0                  37
D62V4, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 1                  15
  CLUS_2                 0                  26
  CLUS_3                 0                  33
  CLUS_4                 2                  16
D62V5, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 0                  53
  CLUS_2                 2                  35
  CLUS_3                 2                  43
D62V6, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 0                  46
  CLUS_2                 3                  58
  CLUS_3                 1                  27
D62V7, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 3                  49
  CLUS_2                 0                  29
  CLUS_3                 1                  55
D62V8, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 0                  31
  CLUS_2                 0                  18
  CLUS_3                 4                  84

Clustering(63) Variable = CYLC2 MUTATION ANALYSIS
D63V1, multiclass
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             2              20
  CLUS_2             2              22
  CLUS_3             2              38
  CLUS_4             8              43
D63V2, multiclass
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             5              49
  CLUS_3             6              40
D63V3, multiclass
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             0              21
  CLUS_2             3              32
  CLUS_3             5              32
D63V4, multiclass
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              23
  CLUS_3             3              30
  CLUS_4             2              16
D63V5, multiclass
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             5              32
  CLUS_3             7              38
D63V6, multiclass
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2            10              51
  CLUS_3             3              25
D63V7, multiclass
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             8              44
  CLUS_2             2              27
  CLUS_3             4              52
D63V8, multiclass
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             1              17
  CLUS_3            12              76

Clustering(64) Variable = VGLL1 MUTATION ANALYSIS
D64V1, multiclass
        clus
vv       VGLL1 MUTATED VGLL1 WILD-TYPE
  CLUS_1             0              22
  CLUS_2             1              23
  CLUS_3             1              39
  CLUS_4             3              48
D64V2, multiclass
        clus
vv       VGLL1 MUTATED VGLL1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              52
  CLUS_3             0              46
D64V3, multiclass
        clus
vv       VGLL1 MUTATED VGLL1 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             2              33
  CLUS_3             1              36
D64V4, multiclass
        clus
vv       VGLL1 MUTATED VGLL1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             1              25
  CLUS_3             2              31
  CLUS_4             0              18
D64V5, multiclass
        clus
vv       VGLL1 MUTATED VGLL1 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             1              36
  CLUS_3             1              44
D64V6, multiclass
        clus
vv       VGLL1 MUTATED VGLL1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             2              59
  CLUS_3             1              27
D64V7, multiclass
        clus
vv       VGLL1 MUTATED VGLL1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             0              29
  CLUS_3             4              52
D64V8, multiclass
        clus
vv       VGLL1 MUTATED VGLL1 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             0              18
  CLUS_3             3              85

Clustering(65) Variable = DEFB110 MUTATION ANALYSIS
D65V1, multiclass
        clus
vv       DEFB110 MUTATED DEFB110 WILD-TYPE
  CLUS_1               1                21
  CLUS_2               0                24
  CLUS_3               1                39
  CLUS_4               3                48
D65V2, multiclass
        clus
vv       DEFB110 MUTATED DEFB110 WILD-TYPE
  CLUS_1               3                34
  CLUS_2               2                52
  CLUS_3               0                46
D65V3, multiclass
        clus
vv       DEFB110 MUTATED DEFB110 WILD-TYPE
  CLUS_1               2                19
  CLUS_2               0                35
  CLUS_3               1                36
D65V4, multiclass
        clus
vv       DEFB110 MUTATED DEFB110 WILD-TYPE
  CLUS_1               2                14
  CLUS_2               0                26
  CLUS_3               1                32
  CLUS_4               0                18
D65V5, multiclass
        clus
vv       DEFB110 MUTATED DEFB110 WILD-TYPE
  CLUS_1               1                52
  CLUS_2               1                36
  CLUS_3               3                42
D65V6, multiclass
        clus
vv       DEFB110 MUTATED DEFB110 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               3                58
  CLUS_3               1                27
D65V7, multiclass
        clus
vv       DEFB110 MUTATED DEFB110 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               0                29
  CLUS_3               2                54
D65V8, multiclass
        clus
vv       DEFB110 MUTATED DEFB110 WILD-TYPE
  CLUS_1               1                30
  CLUS_2               0                18
  CLUS_3               4                84

Clustering(66) Variable = LCE1B MUTATION ANALYSIS
D66V1, multiclass
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             2              20
  CLUS_2             0              24
  CLUS_3             4              36
  CLUS_4             1              50
D66V2, multiclass
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             2              35
  CLUS_2             3              51
  CLUS_3             2              44
D66V3, multiclass
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             1              20
  CLUS_2             3              32
  CLUS_3             2              35
D66V4, multiclass
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              24
  CLUS_3             2              31
  CLUS_4             1              17
D66V5, multiclass
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             3              50
  CLUS_2             1              36
  CLUS_3             3              42
D66V6, multiclass
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             2              44
  CLUS_2             3              58
  CLUS_3             2              26
D66V7, multiclass
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              27
  CLUS_3             3              53
D66V8, multiclass
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  CLUS_1             2              29
  CLUS_2             1              17
  CLUS_3             4              84

Clustering(67) Variable = PARM1 MUTATION ANALYSIS
D67V1, multiclass
        clus
vv       PARM1 MUTATED PARM1 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             0              24
  CLUS_3             4              36
  CLUS_4             5              46
D67V2, multiclass
        clus
vv       PARM1 MUTATED PARM1 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             4              50
  CLUS_3             2              44
D67V3, multiclass
        clus
vv       PARM1 MUTATED PARM1 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             2              33
  CLUS_3             4              33
D67V4, multiclass
        clus
vv       PARM1 MUTATED PARM1 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              25
  CLUS_3             4              29
  CLUS_4             1              17
D67V5, multiclass
        clus
vv       PARM1 MUTATED PARM1 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             3              34
  CLUS_3             3              42
D67V6, multiclass
        clus
vv       PARM1 MUTATED PARM1 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             3              58
  CLUS_3             3              25
D67V7, multiclass
        clus
vv       PARM1 MUTATED PARM1 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             1              28
  CLUS_3             5              51
D67V8, multiclass
        clus
vv       PARM1 MUTATED PARM1 WILD-TYPE
  CLUS_1             3              28
  CLUS_2             1              17
  CLUS_3             6              82

Clustering(68) Variable = ACSM2B MUTATION ANALYSIS
D68V1, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1              3               19
  CLUS_2              3               21
  CLUS_3              5               35
  CLUS_4             13               38
D68V2, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1              6               31
  CLUS_2             12               42
  CLUS_3              6               40
D68V3, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1              4               17
  CLUS_2              5               30
  CLUS_3              7               30
D68V4, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1              4               12
  CLUS_2              4               22
  CLUS_3              6               27
  CLUS_4              2               16
D68V5, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1              6               47
  CLUS_2              7               30
  CLUS_3             11               34
D68V6, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1              4               42
  CLUS_2             12               49
  CLUS_3              8               20
D68V7, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1             14               38
  CLUS_2              1               28
  CLUS_3              9               47
D68V8, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  CLUS_1              5               26
  CLUS_2              1               17
  CLUS_3             18               70

Clustering(69) Variable = BAGE2 MUTATION ANALYSIS
D69V1, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             2              20
  CLUS_2             0              24
  CLUS_3             3              37
  CLUS_4             2              49
D69V2, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              53
  CLUS_3             4              42
D69V3, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             2              33
  CLUS_3             2              35
D69V4, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              24
  CLUS_3             2              31
  CLUS_4             0              18
D69V5, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             0              37
  CLUS_3             5              40
D69V6, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             3              58
  CLUS_3             2              26
D69V7, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              26
  CLUS_3             2              54
D69V8, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             1              17
  CLUS_3             4              84

Clustering(70) Variable = CECR6 MUTATION ANALYSIS
D70V1, multiclass
        clus
vv       CECR6 MUTATED CECR6 WILD-TYPE
  CLUS_1             1              21
  CLUS_2             2              22
  CLUS_3             1              39
  CLUS_4             2              49
D70V2, multiclass
        clus
vv       CECR6 MUTATED CECR6 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             4              50
  CLUS_3             0              46
D70V3, multiclass
        clus
vv       CECR6 MUTATED CECR6 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1              34
  CLUS_3             2              35
D70V4, multiclass
        clus
vv       CECR6 MUTATED CECR6 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             0              26
  CLUS_3             0              33
  CLUS_4             3              15
D70V5, multiclass
        clus
vv       CECR6 MUTATED CECR6 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             1              36
  CLUS_3             4              41
D70V6, multiclass
        clus
vv       CECR6 MUTATED CECR6 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             4              57
  CLUS_3             1              27
D70V7, multiclass
        clus
vv       CECR6 MUTATED CECR6 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             0              29
  CLUS_3             2              54
D70V8, multiclass
        clus
vv       CECR6 MUTATED CECR6 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             0              18
  CLUS_3             5              83

Clustering(71) Variable = OR4M2 MUTATION ANALYSIS
D71V1, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             4              18
  CLUS_2             1              23
  CLUS_3             4              36
  CLUS_4             6              45
D71V2, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             5              32
  CLUS_2             3              51
  CLUS_3             7              39
D71V3, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             4              17
  CLUS_2             3              32
  CLUS_3             5              32
D71V4, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             4              12
  CLUS_2             2              24
  CLUS_3             4              29
  CLUS_4             2              16
D71V5, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             6              47
  CLUS_2             4              33
  CLUS_3             5              40
D71V6, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             6              40
  CLUS_2             5              56
  CLUS_3             4              24
D71V7, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             9              43
  CLUS_2             1              28
  CLUS_3             5              51
D71V8, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             1              17
  CLUS_3            12              76

Clustering(72) Variable = CERKL MUTATION ANALYSIS
D72V1, multiclass
        clus
vv       CERKL MUTATED CERKL WILD-TYPE
  CLUS_1             2              20
  CLUS_2             3              21
  CLUS_3             1              39
  CLUS_4             4              47
D72V2, multiclass
        clus
vv       CERKL MUTATED CERKL WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              52
  CLUS_3             5              41
D72V3, multiclass
        clus
vv       CERKL MUTATED CERKL WILD-TYPE
  CLUS_1             1              20
  CLUS_2             3              32
  CLUS_3             3              34
D72V4, multiclass
        clus
vv       CERKL MUTATED CERKL WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              24
  CLUS_3             4              29
  CLUS_4             0              18
D72V5, multiclass
        clus
vv       CERKL MUTATED CERKL WILD-TYPE
  CLUS_1             4              49
  CLUS_2             3              34
  CLUS_3             3              42
D72V6, multiclass
        clus
vv       CERKL MUTATED CERKL WILD-TYPE
  CLUS_1             5              41
  CLUS_2             3              58
  CLUS_3             2              26
D72V7, multiclass
        clus
vv       CERKL MUTATED CERKL WILD-TYPE
  CLUS_1             4              48
  CLUS_2             1              28
  CLUS_3             5              51
D72V8, multiclass
        clus
vv       CERKL MUTATED CERKL WILD-TYPE
  CLUS_1             3              28
  CLUS_2             1              17
  CLUS_3             6              82
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"             "RPPA_CNMF" 
                     V4                      V5                      V6 
   "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL" 
                     V7                      V8 
          "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
