Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-D3-A1Q3-06A-11D-A194-01	TCGA-D3-A2J6-06A-11D-A192-01	TCGA-D3-A2JB-06A-11D-A194-01	TCGA-D3-A2JC-06A-11D-A192-01	TCGA-D3-A3BZ-06A-12D-A194-01	TCGA-D3-A3C8-06A-12D-A192-01	TCGA-D3-A3CC-06A-11D-A192-01	TCGA-D3-A3CF-06A-11D-A194-01	TCGA-D9-A149-06A-11D-A194-01	TCGA-DA-A1IA-06A-11D-A194-01	TCGA-DA-A3F2-06A-11D-A20B-01	TCGA-EE-A17Z-06A-11D-A194-01	TCGA-EE-A20I-06A-11D-A194-01	TCGA-EE-A29B-06A-11D-A191-01	TCGA-EE-A29D-06A-11D-A191-01	TCGA-EE-A2GI-06A-11D-A194-01	TCGA-EE-A2GK-06A-11D-A194-01	TCGA-EE-A2MR-06A-11D-A194-01	TCGA-ER-A197-06A-32D-A191-01	TCGA-ER-A19L-06A-12D-A191-01	TCGA-ER-A19T-06A-11D-A192-01	TCGA-ER-A1A1-06A-11D-A191-01	TCGA-ER-A2NF-06A-11D-A192-01	TCGA-ER-A3ES-06A-11D-A20B-01	TCGA-ER-A3ET-06A-11D-A20B-01	TCGA-ER-A3EV-06A-11D-A20B-01	TCGA-FS-A1Z4-06A-11D-A191-01	TCGA-FS-A1ZG-06A-11D-A191-01	TCGA-FS-A1ZJ-06A-12D-A191-01	TCGA-FS-A1ZK-06A-11D-A191-01	TCGA-FS-A1ZU-06A-12D-A194-01	TCGA-GN-A261-06A-12D-A191-01	TCGA-GN-A264-06A-11D-A194-01	TCGA-GN-A26A-06A-11D-A192-01	TCGA-GN-A26D-06A-11D-A192-01	
Amplification Peak  1	1p12   	chr1:119929443-149882013(probes 67438:67830)    	chr1:120099045-120224971(probes 67599:67647)    	chr1:119920809-149885582(probes 67434:67832)    	0.0034191	  0.0034191		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	1	1	0	0	0	0	0	0	0	1	0	2	1	0	1	0	2	2	0	0	0	2	0	0	0	0	1	1	0	2	0	0	
Amplification Peak  2	1q44   	chr1:245627602-247069231(probes 128357:128780)  	chr1:246112534-246134022(probes 128719:128732)  	chr1:245650749-247149232(probes 128358:128819)  	0.020124	   0.020124		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	0	1	1	0	0	0	0	2	0	1	1	2	1	1	0	1	2	0	0	0	1	1	2	1	0	0	2	2	2	0	0	2	1	
Amplification Peak  3	4q12   	chr4:54677084-55102558(probes 396332:396562)      	chr4:54998796-55047541(probes 396517:396538)      	chr4:54617917-55115755(probes 396278:396593)      	0.0088139	  0.0088139		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	0	0	0	2	1	0	0	2	2	1	0	1	0	1	
Amplification Peak  4	5p15.33	chr5:1287541-1300024(probes 469828:469833)          	chr5:1287704-1299328(probes 469829:469832)          	chr5:1-1350010(probes 469777:469849)                 	0.00036086	 0.00036086		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	0	1	0	0	2	2	0	0	0	0	1	0	1	0	0	0	1	0	1	0	2	0	0	0	0	1	0	2	0	0	2	0	2	
Amplification Peak  5	5q35.3 	chr5:177884788-179704902(probes 569046:570076)  	chr5:178217569-178303310(probes 569242:569288)  	chr5:178217569-178311511(probes 569242:569291)  	0.17895	    0.17895		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	0	0	1	2	0	0	0	0	0	
Amplification Peak  6	8q11.21	chr8:42932479-70954271(probes 772992:786374)      	chr8:50133939-50195013(probes 774204:774233)      	chr8:50133939-50196112(probes 774204:774236)      	0.13957	    0.13957		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	1	1	2	2	0	1	0	1	0	1	0	0	2	2	0	1	1	1	
Amplification Peak  7	11q13.3	chr11:1-135006516(probes 978761:1056046)          	chr11:69839000-69882409(probes 1015404:1015439)  	chr11:67181012-79359379(probes 1014324:1020758)  	0.00036086	          1		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	2	1	0	0	0	0	2	0	0	0	0	2	
Amplification Peak  8	11q13.3	chr11:69150824-71070966(probes 1015044:1016166)  	chr11:69839000-69882409(probes 1015404:1015439)  	chr11:67181012-79359379(probes 1014324:1020758)  	0.00036086	 0.00059908		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	2	1	0	0	0	0	2	0	0	0	0	2	
Amplification Peak  9	12q14.1	chr12:58135797-58287201(probes 1085672:1085749)  	chr12:58138772-58145710(probes 1085673:1085679)  	chr12:57851596-60206026(probes 1085547:1087072)  	0.001442	   0.001442		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	2	0	2	1	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	2	1	2	
Amplification Peak 10	17q25.3	chr17:78484485-81195210(probes 1357687:1358539)  	chr17:78530908-78541159(probes 1357726:1357734)  	chr17:78530908-78549438(probes 1357726:1357737)  	0.21877	    0.21877		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	1	1	1	0	1	1	0	2	0	0	0	0	1	1	0	1	0	0	2	0	0	0	2	1	0	0	0	2	1	0	0	0	1	
Amplification Peak 11	22q13.1	chr22:39065583-39085890(probes 1493664:1493674)  	chr22:39065688-39085188(probes 1493665:1493673)  	chr22:38556381-39110611(probes 1493396:1493683)  	0.018493	   0.018493		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	1	2	0	0	1	0	0	1	0	0	0	0	0	1	0	1	0	1	2	0	1	0	1	0	0	2	0	1	2	0	1	1	1	
Amplification Peak 12	Xq28   	chrX:149527988-151248667(probes 1562137:1563203)	chrX:150021680-150280252(probes 1562460:1562589)	chrX:150021680-150314673(probes 1562460:1562592)	0.1179	     0.1179		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	2	0	0	1	0	1	1	0	1	0	2	
Deletion Peak 1	2q37.3 	chr2:239007902-243199373(probes 258734:260556)    	chr2:239748105-242045630(probes 259168:260311)    	chr2:238478149-243199373(probes 258371:260556)    	0.0030414	  0.0030414		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	1	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	1	1	0	0	1	0	0	0	1	0	1	
Deletion Peak 2	4q34.3 	chr4:156262946-183068969(probes 452598:467363)    	chr4:181521852-182082855(probes 466566:466569)    	chr4:181525132-182487424(probes 466567:466910)    	0.035785	   0.038018		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	1	1	1	1	0	0	0	0	0	0	
Deletion Peak 3	5p15.31	chr5:1-43319646(probes 469777:494855)                 	chr5:8456711-8465019(probes 475168:475177)            	chr5:8385181-8593658(probes 475116:475289)            	0.11816	    0.11816		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	1	0	0	0	1	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	
Deletion Peak 4	9p21.3 	chr9:21959052-22448737(probes 843293:843606)        	chr9:21959052-21997722(probes 843293:843306)        	chr9:12682664-22636441(probes 836086:843702)        	4.7668e-08	 4.7668e-08		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	1	0	0	1	1	1	1	0	0	1	0	1	1	0	1	1	1	1	0	0	1	0	1	0	1	1	0	0	0	1	1	1	
Deletion Peak 5	10q26.3	chr10:105229749-135534747(probes 959131:978760)  	chr10:135158100-135534747(probes 978732:978760)  	chr10:132179422-135534747(probes 978072:978760)  	0.021422	   0.021531		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	1	1	1	1	0	1	1	0	1	1	0	0	0	1	1	0	1	0	1	1	0	0	1	0	1	0	1	1	0	
Deletion Peak 6	11q23.3	chr11:102979829-135006516(probes 1035388:1056046)	chr11:113557965-117872719(probes 1041716:1044814)	chr11:103766745-135006516(probes 1035747:1056046)	0.003312	   0.003312		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	1	0	0	1	1	1	1	0	0	1	0	1	1	0	0	1	1	1	0	1	1	1	1	0	0	1	0	1	0	1	1	1	
Deletion Peak 7	15q14  	chr15:27109052-50795834(probes 1238137:1250022)    	chr15:38538826-38656253(probes 1243211:1243276)    	chr15:27600680-50681467(probes 1238468:1249961)    	0.0030414	  0.0030414		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	1	1	1	1	1	0	0	0	0	1	
Deletion Peak 8	16p13.3	chr16:5144019-7771745(probes 1282389:1283888)        	chr16:6066397-7771745(probes 1283026:1283888)        	chr16:7369731-7376241(probes 1283458:1283459)        	0.11518	    0.10894		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	1	0	1	0	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	
Amplification Peak  1 - CN values	1p12   	chr1:119929443-149882013(probes 67438:67830)    	chr1:120099045-120224971(probes 67599:67647)    	chr1:119920809-149885582(probes 67434:67832)    	0.0034191	  0.0034191		Actual Copy Change Given	0.05466	3.1483	0.0078862	0.28311	0.11961	0.020203	-0.03504	0.0055116	0.053074	-0.10275	0.0026357	-0.0013858	0.73057	-0.0059522	1.9071	0.5439	0.0020805	0.2904	-0.11064	3.6569	1.2628	-0.0013606	-0.022058	-0.0008316	1.2727	0.086956	0.045863	-0.0008316	-0.63206	0.82804	0.59332	0	3.6569	-0.0015243	-0.55186	
Amplification Peak  2 - CN values	1q44   	chr1:245627602-247069231(probes 128357:128780)  	chr1:246112534-246134022(probes 128719:128732)  	chr1:245650749-247149232(probes 128358:128819)  	0.020124	   0.020124		Actual Copy Change Given	0.72622	0.0034687	0.017264	0.28311	0.11961	0.020203	-0.55176	0.047836	0.041297	1.1262	0.0026357	0.86116	0.74632	1.5286	0.56685	0.5439	0.0020805	0.11536	3.6569	0.011171	-0.0056001	-0.0013606	0.857	0.83982	1.4331	0.57916	0.076279	-0.0008316	1.2297	1.5166	3.6569	0	0.010703	1.9564	0.54242	
Amplification Peak  3 - CN values	4q12   	chr4:54677084-55102558(probes 396332:396562)      	chr4:54998796-55047541(probes 396517:396538)      	chr4:54617917-55115755(probes 396278:396593)      	0.0088139	  0.0088139		Actual Copy Change Given	3.2018	-0.59078	0.0063871	0.00013863	1.1364	-0.0033243	-0.50142	0	-0.25287	-0.013562	0.0076392	0.00069327	-0.0029091	0.016565	-0.31961	0.34867	-0.0051227	0.11213	3.6569	-0.03699	0.0040243	0.013166	0.010564	0.00097064	1.0057	0.12138	-0.16625	0.020763	2.1974	3.0919	0.6217	0.00055459	0.17347	-0.010577	0.43311	
Amplification Peak  4 - CN values	5p15.33	chr5:1287541-1300024(probes 469828:469833)          	chr5:1287704-1299328(probes 469829:469832)          	chr5:1-1350010(probes 469777:469849)                 	0.00036086	 0.00036086		Actual Copy Change Given	3	0.023566	0.027778	0.82921	-0.015879	0	2.1629	3.6569	0.080016	0.042468	0.004719	0.0065262	0.67011	0.0114	0.10526	-0.12324	-0.0016629	-0.060883	0.13302	0.023756	0.3592	-0.0036721	2.5455	-0.0008316	-0.054286	-0.023292	0.0026357	0.74863	0.0034687	1.4687	-0.0078863	0.0012481	1.298	-0.012713	3.6569	
Amplification Peak  5 - CN values	5q35.3 	chr5:177884788-179704902(probes 569046:570076)  	chr5:178217569-178303310(probes 569242:569288)  	chr5:178217569-178311511(probes 569242:569291)  	0.17895	    0.17895		Actual Copy Change Given	2.3403	-0.016017	0.0024846	-0.014228	-0.020549	0	-0.12174	3.5964	0.050367	0.59842	0.004719	-0.94576	-0.79795	0.0062064	0.087739	-0.10717	-0.0016629	-0.16357	0.046922	-0.00078231	0.33772	0.0018951	-0.020961	0.82706	1.2081	0.0062481	0.0026357	-0.0066432	0.76293	1.4699	-0.0078863	0.0012481	0.00097064	-0.012024	-0.01354	
Amplification Peak  6 - CN values	8q11.21	chr8:42932479-70954271(probes 772992:786374)      	chr8:50133939-50195013(probes 774204:774233)      	chr8:50133939-50196112(probes 774204:774236)      	0.13957	    0.13957		Actual Copy Change Given	-0.03395	0.98659	-0.0049184	0.24716	0.075415	-0.012811	0.37677	0.079015	0.075761	-0.28863	0.0055529	0.86175	-0.78757	-0.00041585	-0.053611	0.041661	0.0013868	0.11477	0.14592	1.3411	3.6569	0.0059232	0.83549	0.0075404	0.8479	0.00055459	0.19026	0	-0.020412	1.5724	2.7803	-0.0029091	0.544	0.39761	0.36135	
Amplification Peak  7 - CN values	11q13.3	chr11:1-135006516(probes 978761:1056046)          	chr11:69839000-69882409(probes 1015404:1015439)  	chr11:67181012-79359379(probes 1014324:1020758)  	0.00036086	          1		Actual Copy Change Given	-0.012411	3.6569	0.7429	0.2087	0.020763	-0.052396	-0.18207	0.3588	-0.14569	-0.012075	0	-0.019023	0.016705	-0.0033243	0.080359	-0.008793	-0.0020784	-0.079343	-0.081738	-0.83184	3.6569	-0.020246	1.634	3.5339	0.3669	-0.42473	0	-0.0083005	-0.034768	3.6569	-0.059942	0.00013863	-0.1223	-0.42582	1.2319	
Amplification Peak  8 - CN values	11q13.3	chr11:69150824-71070966(probes 1015044:1016166)  	chr11:69839000-69882409(probes 1015404:1015439)  	chr11:67181012-79359379(probes 1014324:1020758)  	0.00036086	 0.00059908		Actual Copy Change Given	-0.012411	3.6569	0.7429	0.2087	0.020763	-0.052396	-0.18207	0.3588	-0.14569	-0.012075	0	-0.019023	0.016705	-0.0033243	0.080359	-0.008793	-0.0020784	-0.079343	-0.081738	-0.83184	3.6569	-0.020246	1.634	3.5339	0.3669	-0.42473	0	-0.0083005	-0.034768	3.6569	-0.059942	0.00013863	-0.1223	-0.42582	1.2319	
Amplification Peak  9 - CN values	12q14.1	chr12:58135797-58287201(probes 1085672:1085749)  	chr12:58138772-58145710(probes 1085673:1085679)  	chr12:57851596-60206026(probes 1085547:1087072)  	0.001442	   0.001442		Actual Copy Change Given	-0.012576	0.52415	0	-0.014228	3.0905	0.00013863	3.4987	0.16971	0.050657	-0.0067627	0.0033299	0.77425	-0.7997	-0.0034002	0.21422	0.014251	0.0051359	-0.053206	0.66069	-0.00064373	-0.033677	0.01205	-0.00055444	0.0019418	0.2061	0.0030522	-0.18005	0.060222	-0.006069	0.78061	-0.011611	-0.0018014	3.6569	0.35724	3.6569	
Amplification Peak 10 - CN values	17q25.3	chr17:78484485-81195210(probes 1357687:1358539)  	chr17:78530908-78541159(probes 1357726:1357734)  	chr17:78530908-78549438(probes 1357726:1357737)  	0.21877	    0.21877		Actual Copy Change Given	0.54383	-0.021098	0.13391	0.21376	0.17392	-0.023977	0.1646	0.38171	-0.012457	1.0952	-0.0026322	-0.012851	-0.037762	-0.011997	0.42839	0.35388	-0.015179	0.2442	0.038826	-0.81228	0.98638	0.021416	-0.034768	-0.0033243	2.5691	0.77082	-0.14952	-0.018902	-0.0055375	3.5174	0.59512	0.0013868	-0.015879	0.0033299	0.68663	
Amplification Peak 11 - CN values	22q13.1	chr22:39065583-39085890(probes 1493664:1493674)  	chr22:39065688-39085188(probes 1493665:1493673)  	chr22:38556381-39110611(probes 1493396:1493683)  	0.018493	   0.018493		Actual Copy Change Given	3.6569	0.00055459	0.15756	3.506	-0.0085766	0.094056	0.87886	-0.022744	-0.049984	0.54623	-0.0030475	-0.028081	-0.035457	0.0015255	-1.1563	0.28872	0.0040243	0.23318	0.00597	0.29921	1.3741	0.0089844	0.80197	0.026092	0.37068	-0.0036011	-0.048613	2.5391	-0.87244	0.63153	1.1379	-0.0067813	0.5156	0.41312	0.46051	
Amplification Peak 12 - CN values	Xq28   	chrX:149527988-151248667(probes 1562137:1563203)	chrX:150021680-150280252(probes 1562460:1562589)	chrX:150021680-150314673(probes 1562460:1562592)	0.1179	     0.1179		Actual Copy Change Given	0.17257	-0.21081	-0.015604	-0.4381	0.061067	-0.0013858	0.56614	-0.0071538	-0.080426	0.029293	0.0068809	-0.076678	-0.2648	-0.019252	0.26907	-0.0086421	-0.0024938	0.041317	-0.018216	-0.14356	-0.018353	0.0011572	1.3913	0.014749	3.6569	-0.046854	-0.010508	0.50525	-0.62493	0.55169	0.13391	-0.00013862	0.48113	0.032845	3.6569	
Deletion Peak 1 - CN values	2q37.3 	chr2:239007902-243199373(probes 258734:260556)    	chr2:239748105-242045630(probes 259168:260311)    	chr2:238478149-243199373(probes 258371:260556)    	0.0030414	  0.0030414		Actual Copy Change Given	0.027746	0.0114	-0.0076081	-0.39196	0.09159	0.0097288	0.20641	-0.012547	-0.25836	-0.70826	-0.0011087	-0.0091286	-0.78361	-0.011617	-0.38817	-0.027612	-0.0016098	0.21345	-0.32772	0	-1.0712	-0.0032724	0.0086135	-0.03681	-0.64424	-0.82993	0.12712	-0.0020784	-0.87197	-0.0096806	0.012934	-0.00041585	-0.56286	0.037076	-0.55286	
Deletion Peak 2 - CN values	4q34.3 	chr4:156262946-183068969(probes 452598:467363)    	chr4:181521852-182082855(probes 466566:466569)    	chr4:181525132-182487424(probes 466567:466910)    	0.035785	   0.038018		Actual Copy Change Given	-0.041024	-0.01106	0.0063871	0	-0.0022168	-0.0033243	-0.50142	-0.0026322	-0.22166	-0.013562	0.0076392	-0.0092666	-0.020687	0.016565	0.56045	-0.39348	-0.0051227	0.11213	-0.27965	0.86421	0.003191	0.0081491	0.010564	0.87926	-0.14212	-1.2929	-0.16625	-0.54088	-1.2929	-0.026851	0.61465	0.00055459	0.68924	-0.018902	0.43581	
Deletion Peak 3 - CN values	5p15.31	chr5:1-43319646(probes 469777:494855)                 	chr5:8456711-8465019(probes 475168:475177)            	chr5:8385181-8593658(probes 475116:475289)            	0.11816	    0.11816		Actual Copy Change Given	-0.13846	0.023566	-0.1679	2.2708	-0.015879	0	-0.59351	-0.38358	0.080016	0.042468	0.004719	0.0065262	-0.77998	0.0062064	0.10526	-0.12324	-0.0016629	-0.060883	0.13302	-0.017937	0.3592	0.0018951	0.0016642	-0.0008316	-0.025346	-0.023292	0.0026357	0.98142	0.0034687	1.5945	-0.0078863	0.0012481	-0.59594	-0.012713	-0.74478	
Deletion Peak 4 - CN values	9p21.3 	chr9:21959052-22448737(probes 843293:843606)        	chr9:21959052-21997722(probes 843293:843306)        	chr9:12682664-22636441(probes 836086:843702)        	4.7668e-08	 4.7668e-08		Actual Copy Change Given	-0.025742	-0.63273	-0.1995	-0.28976	-0.0026322	-0.038442	-1.0396	-0.36567	-0.63122	-0.61224	-0.00069303	0.015533	-0.78589	0.00069327	-1.2929	-0.38622	0.0094491	-0.16967	-0.37789	-1.0403	-0.99165	-0.036583	0.84731	-0.94423	0.36444	-0.34331	-0.0063668	-1.0045	-1.2929	-0.0081624	0	-0.00041585	-0.55176	-0.39018	-0.57259	
Deletion Peak 5 - CN values	10q26.3	chr10:105229749-135534747(probes 959131:978760)  	chr10:135158100-135534747(probes 978732:978760)  	chr10:132179422-135534747(probes 978072:978760)  	0.021422	   0.021531		Actual Copy Change Given	0	-0.095384	-0.070402	-0.35772	-0.0029091	0.0051359	-0.60322	-0.45869	-0.28705	-0.62901	-0.0016629	-0.92867	-0.77422	-0.0018014	-0.15106	-0.35665	-0.0067813	-0.020318	-0.079742	-0.8148	-0.53164	-0.018674	-1.2439	0.006109	-0.85114	-0.80184	-0.028491	0.0036076	-0.86662	-0.018078	-0.69495	-0.0044312	-0.56634	-0.87471	-0.067056	
Deletion Peak 6 - CN values	11q23.3	chr11:102979829-135006516(probes 1035388:1056046)	chr11:113557965-117872719(probes 1041716:1044814)	chr11:103766745-135006516(probes 1035747:1056046)	0.003312	   0.003312		Actual Copy Change Given	-0.013815	-0.63997	-0.20411	-0.40948	-0.087181	-0.052396	-0.19187	-0.38873	-0.14569	-0.61663	0	0.0015255	-0.78824	-0.011068	-0.8364	-0.78265	-0.0020784	-0.079343	-0.39441	-0.81521	-0.51887	-0.020246	-0.95218	-0.94362	-0.14039	-1.2326	-0.0047079	-0.024661	-0.86113	-0.024251	-0.64387	0.00013863	-0.1223	-0.42745	-0.6214	
Deletion Peak 7 - CN values	15q14  	chr15:27109052-50795834(probes 1238137:1250022)    	chr15:38538826-38656253(probes 1243211:1243276)    	chr15:27600680-50681467(probes 1238468:1249961)    	0.0030414	  0.0030414		Actual Copy Change Given	0.0097276	0.030451	0.0083351	0.25074	0.10089	0.011679	-0.5243	0.0011093	1.701	-0.11561	-0.0038779	-0.92592	0	0.00083195	0.32431	0.23852	0.00083195	0.082621	-0.3694	0.013402	0.61262	-0.010554	-0.016017	0.0090031	-0.57901	-0.75583	-0.13626	-1.0281	-0.87736	-0.85281	0	0.00041593	0.48837	0.40511	-1.1714	
Deletion Peak 8 - CN values	16p13.3	chr16:5144019-7771745(probes 1282389:1283888)        	chr16:6066397-7771745(probes 1283026:1283888)        	chr16:7369731-7376241(probes 1283458:1283459)        	0.11518	    0.10894		Actual Copy Change Given	0.017544	-0.0044312	-0.13962	0.33691	-0.10224	-0.027808	-0.54673	0.0033299	-0.016723	-0.044492	-0.0019399	0.052525	-0.81638	0.0062481	-0.3943	0.29587	-0.012024	-0.027671	-0.15119	0.02379	-0.55527	-0.015513	-0.027945	0.015587	-0.067993	-0.024251	0.022725	-0.024935	-0.05442	-0.034359	-0.6749	-0.0038779	-0.0056757	0.0040207	-0.18257	
