min sampled: 11
max sampled: 18
avg sampled: 15.757576
17 17 15 14 18 17 16 17 14 15 18 16 18 14 15 17 12 15 18 15 16 11 16 18 14 15 15 15 16 18 16 14 18 Number of clusters distribution:
Num	Count
1	0
2	20
3	20
4	20
5	20
6	20
7	20
8	20
Reading consensus matrices from files ..

	processing file 'outputprefix.expclu.sub26.2.gct' ..

	processing file 'outputprefix.expclu.sub26.3.gct' ..

	processing file 'outputprefix.expclu.sub26.4.gct' ..

	processing file 'outputprefix.expclu.sub26.5.gct' ..

	processing file 'outputprefix.expclu.sub26.6.gct' ..

	processing file 'outputprefix.expclu.sub26.7.gct' ..

	processing file 'outputprefix.expclu.sub26.8.gct' ..

Plotting statistics to 'outputprefix.expclu.sub26.statistics.pdf' .. 

	Lorenz curve .. done.

	Gini..done.

	Consensus distribution .. done.

	CDF area .. done.

lsf stdout
Sender: LSF System <lsf@node1644>
Subject: Job 3833230: </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/398504/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> in cluster cgalsf Done

Job </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/398504/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> was submitted from host <node1726> by user <cgaadm> in cluster <cgalsf>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cgalsf>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/398505> was used as the working directory.
Started at Fri May  3 12:45:22 2013
Results reported at Fri May  3 12:45:26 2013

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/398504/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :      4.97 sec.
    Max Memory :         4 MB
    Max Swap   :        37 MB

    Max Processes  :         1
    Max Threads    :         1

The output (if any) follows:



PS:

Read file <.lsf.err> for stderr output of this job.

lsf stderr
