Broad GDAC Analyses Status
awg_tcga-thca__2018_06_13 Run for Tumor Type: TCGA-THCA
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Pipeline
NotRun
InProcess
Successful
Unsuccessful
1
Aggregate_Analysis_Features
0
0
0
1
2
Aggregate_Molecular_Subtype_Clusters
0
0
1
0
3
CopyNumber_Clustering_CNMF
0
0
1
0
4
CopyNumber_Clustering_CNMF_thresholded
0
0
1
0
5
CopyNumber_Gistic2
0
0
1
0
6
CopyNumber_Gistic2_Postprocess_Focal
0
0
1
0
7
Correlate_Clinical_vs_CopyNumber_Arm
0
0
1
0
8
Correlate_Clinical_vs_CopyNumber_Focal
0
0
1
0
9
Correlate_Clinical_vs_Molecular_Subtypes
0
0
1
0
10
Correlate_Clinical_vs_mRNA
0
0
1
0
11
Correlate_Clinical_vs_Mutation
0
0
1
0
12
Correlate_Clinical_vs_Mutation_APOBEC_Categorical
0
0
1
0
13
Correlate_Clinical_vs_Mutation_APOBEC_Continuous
0
0
1
0
14
Correlate_Clinical_vs_MutationRate
0
0
1
0
15
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
1
0
16
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
1
0
17
Correlate_molecularSubtype_vs_Mutation
0
0
1
0
18
Methylation__HM27_Preprocess
0
0
0
1
19
Methylation__HM450_Clustering_CNMF
0
0
1
0
20
Methylation__HM450_Clustering_Consensus_Plus
0
0
1
0
21
Methylation__HM450_Preprocess
0
0
1
0
22
miR_Find_Direct_Targets
0
0
1
0
23
miR_Mature_Clustering_CNMF
0
0
1
0
24
miR_Mature_Clustering_Consensus_Plus
0
0
1
0
25
miR_Mature_Preprocess
0
0
1
0
26
mRNA_lincRNA_Clustering_CNMF
0
0
1
0
27
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
1
0
28
mRNA_protein_coding_Clustering_CNMF
0
0
1
0
29
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
1
0
30
Mutation_APOBEC
0
0
1
0
31
Mutation_Assessor
0
0
1
0
32
Mutation_MutSig2CV
0
0
1
0
33
Mutation_Signature_Analyzer
0
0
1
0
34
Pathway_GSEA_mRNA
0
0
1
0
Total
0
0
32
2
Cohort
BCR
Clinical
CN
mRNA
miR
MAF
Methylation
TCGA-THCA
506
506
505
502
506
496
506
TCGA-THCA-NB
416
417
417
0
0
0
0
TCGA-THCA-NT
99
98
96
58
59
0
56
TCGA-THCA-TM
8
8
7
8
8
8
8
TCGA-THCA-TP
506
506
505
502
506
496
506
This page generated on Thu Jun 21 13:46:00 2018