# Created: Sun Nov 11 23:08:44 EST 2012 by cgaadm_deadline
# Job: 227230    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: Correlate_Clinical_Cnvsarms_onlysig urn:lsid:broadinstitute.org:cancer.genome.analysis:00498:11
# Parameters: 
#    cluster.label.file = broad_values_by_arm.mutsig.cluster.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/227229/broad_values_by_arm.mutsig.cluster.txt
#    clinical.info.file = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/THCA/1972822/1.GDAC_clinicalDataPicker.Finished/THCA.clin.merged.picked.txt
#    features.used = ALL
#    filter.cluster.smaller.than = 3
#    output.name = THCA
#    figure.height = 5
#    figure.width = 9
#    survival.legend.position = OUT
#    pvalue.cutoff = 1
#    qvalue.cutoff = 0.25
#    make.figure = ONLYSIG
#    nozzle.ver = Nozzle.R1
#    options = MUTSIG
#    report.title = 
#    job.description = 
