Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Del Peak  2(2p22.3)	11 (3%)	421	1.4939e-09	2.84e-07	0.00014648	0.0248	0.7724	1	0.017869	1	1.8261e-05	0.00327	1.9254e-05	0.00341	1.0178e-06	0.000187	3.3647e-07	6.26e-05
Del Peak  3(2q35)	11 (3%)	421	2.4352e-11	4.65e-09	3.9653e-05	0.00682	0.56155	1	0.0028747	0.418	1.8261e-05	0.00327	1.9254e-05	0.00341	1.0178e-06	0.000187	3.3647e-07	6.26e-05
Del Peak  5(6q22.31)	6 (1%)	426	0.00055617	0.089	0.011212	1	0.037905	1	0.79799	1	0.01726	1	0.009332	1	0.038274	1	0.02248	1
Del Peak  6(6q27)	6 (1%)	426	0.00055617	0.089	0.011212	1	0.037905	1	0.79799	1	0.01726	1	0.009332	1	0.038274	1	0.02248	1
Del Peak  8(7q34)	4 (1%)	428	0.65263	1	0.8073	1	NA	NA	NA	NA	0.74667	1	0.58905	1	0.68724	1	0.82319	1
Del Peak  9(8p12)	4 (1%)	428	3.2405e-05	0.00561	0.053167	1	NA	NA	NA	NA	0.037083	1	0.034594	1	0.0072204	0.989	0.0048899	0.68
Del Peak 10(8q24.22)	7 (2%)	425	7.1321e-05	0.0122	0.0028651	0.418	0.83694	1	0.05495	1	0.0021339	0.32	0.0012153	0.19	0.00016777	0.0282	8.4033e-05	0.0143
Del Peak 11(9p21.3)	17 (4%)	415	1.1859e-12	2.29e-10	0.10339	1	0.44371	1	0.17684	1	0.11779	1	0.5145	1	0.0024858	0.368	0.0028209	0.415
Del Peak 12(9q22.32)	22 (5%)	410	1.2768e-11	2.45e-09	0.19348	1	0.18242	1	0.013559	1	0.24843	1	0.7732	1	0.03112	1	0.06239	1
Del Peak 13(10q21.2)	10 (2%)	422	0.005404	0.746	0.083688	1	0.16234	1	1	1	0.051292	1	0.14798	1	0.37247	1	0.60984	1
Del Peak 14(10q23.31)	10 (2%)	422	0.0005252	0.0856	0.065064	1	0.033562	1	0.064148	1	0.0042431	0.603	0.0011544	0.181	0.025823	1	0.012501	1
Del Peak 15(11p15.1)	5 (1%)	427	2.2714e-06	0.000413	0.068886	1	0.49868	1	1	1	0.049471	1	0.16621	1	0.038274	1	0.02248	1
Del Peak 16(13q12.3)	15 (3%)	417	0.0046126	0.646	0.0016265	0.249	0.38844	1	0.43998	1	0.0096325	1	0.044841	1	0.19358	1	0.11304	1
Del Peak 17(13q14.3)	18 (4%)	414	0.0014252	0.219	0.045715	1	0.090753	1	1	1	0.0103	1	0.02493	1	0.081855	1	0.064561	1
Del Peak 18(15q25.3)	7 (2%)	425	0.0016502	0.251	0.046224	1	0.44371	1	0.081715	1	0.084076	1	0.067174	1	0.0043737	0.617	0.0020895	0.316
Del Peak 20(16q23.3)	6 (1%)	426	0.057535	1	0.10816	1	0.44371	1	0.10254	1	0.12701	1	0.1114	1	0.25057	1	0.29233	1
Del Peak 21(17p13.1)	8 (2%)	424	0.0040529	0.584	0.88891	1	1	1	1	1	0.71011	1	0.64182	1	0.07985	1	0.30679	1
Del Peak 22(18p11.21)	4 (1%)	428	0.00030837	0.0512	0.20362	1	1	1	0.36851	1	0.2424	1	0.089285	1	0.10851	1	0.038863	1
Del Peak 23(19p13.2)	7 (2%)	425	0.0136	1	0.00047644	0.0781	0.32294	1	0.12945	1	0.0021339	0.32	0.0012153	0.19	0.0005916	0.0935	0.00032797	0.0541
Del Peak 26(21q21.1)	8 (2%)	424	1.7363e-05	0.00313	0.20542	1	0.14723	1	0.2062	1	0.28883	1	0.45908	1	0.085132	1	0.084273	1
Del Peak 27(22q13.31)	74 (17%)	358	4.3324e-78	8.49e-76	0.00054642	0.0885	0.20537	1	0.079474	1	3.1062e-07	5.84e-05	1.9956e-05	0.00349	0.012995	1	0.013024	1
Del Peak 28(22q13.2)	74 (17%)	358	4.3324e-78	8.49e-76	0.00054642	0.0885	0.20537	1	0.079474	1	3.1062e-07	5.84e-05	1.9956e-05	0.00349	0.012995	1	0.013024	1
Del Peak 29(22q13.32)	75 (17%)	357	3.0395e-76	5.9e-74	0.00029362	0.049	0.20537	1	0.079474	1	1.6434e-07	3.11e-05	1.1745e-05	0.00213	0.0077701	1	0.0077386	1
Del Peak 30(Xq22.1)	6 (1%)	426	0.0099337	1	0.44507	1	0.099343	1	0.11999	1	0.67141	1	0.8608	1	0.52006	1	0.3863	1
Del Peak 31(Xq22.3)	4 (1%)	428	0.0041282	0.59	0.053167	1	0.28073	1	0.36851	1	0.12903	1	0.39981	1	0.10851	1	0.038863	1