Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	THCA-Mut_BRAF.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	THCA-Mut_BRAF.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	THCA-Mut_BRAF.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	THCA-Mut_BRAF.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	THCA-Mut_BRAF.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	THCA-Mut_BRAF.allclusters.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	THCA-Mut_BRAF.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.6.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.3.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.5.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.4.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.8.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.2.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.7.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	THCA-Mut_BRAF.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	THCA-Mut_BRAF.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	THCA-Mut_BRAF.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	THCA-Mut_BRAF.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	THCA-Mut_BRAF.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	THCA-Mut_BRAF.allclusters.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	THCA-Mut_BRAF.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.6.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.3.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.5.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.4.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.8.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.2.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	outputprefix.expclu.sub96.srt.7.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA-Mut_BRAF.rppa.txt	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_AnnotateWithGene.Level_3.2013070100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:36	RPPA_Clustering_Consensus_2013070100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_THCA-Mut_BRAF.RPPA_Clustering_Consensus.Level_4.2013070100.0.0	yes
