task	THCA
Add_CustomClinical
Add_CustomEvents
Aggregate_Gene_Status
Aggregate_Molecular_Subtype_Clusters
CoMut1.5
CoMut2.0
CoMutCV
CoMutMerged
CopyNumber_Clustering_CNMF
CopyNumber_Clustering_CNMF_armlevel
CopyNumber_Gistic2
CopyNumber_Gistic2_Postprocess_Focal
Correlate_Clinical_vs_CopyNumber_Arm
Correlate_Clinical_vs_CopyNumber_Focal
Correlate_Clinical_vs_CustomEvents
Correlate_Clinical_vs_Methylation
Correlate_Clinical_vs_miR
Correlate_Clinical_vs_miRseq
Correlate_Clinical_vs_Molecular_Subtypes
Correlate_Clinical_vs_mRNA
Correlate_Clinical_vs_mRNAseq
Correlate_Clinical_vs_Mutation
Correlate_Clinical_vs_RPPA
Correlate_CopyNumber_vs_miR
Correlate_CopyNumber_vs_mRNA
Correlate_CopyNumber_vs_mRNAseq
Correlate_CustomClinical_vs_CopyNumber_Arm
Correlate_CustomClinical_vs_CopyNumber_Focal
Correlate_CustomClinical_vs_CustomEvents
Correlate_CustomClinical_vs_Methylation
Correlate_CustomClinical_vs_miRseq
Correlate_CustomClinical_vs_Molecular_Subtypes
Correlate_CustomClinical_vs_mRNAseq
Correlate_CustomClinical_vs_Mutation
Correlate_CustomClinical_vs_RPPA
Correlate_Methylation_vs_mRNA
Correlate_molecularSubtype_vs_CopyNumber_Arm
Correlate_molecularSubtype_vs_CopyNumber_Focal
Correlate_molecularSubtype_vs_Mutation
expanded_coMutPlot
GenerateStickFigures1.5
GenerateStickFigures2.0
GenerateStickFiguresCV
GenerateStickFiguresMerged
LegoPlotter1.5
LegoPlotter2.0
LegoPlotterCV
LegoPlotterMerged
MergeMutSigRunResults
Methylation_Clustering_CNMF
Methylation_Preprocess
miRseq_Clustering_CNMF
miRseq_Clustering_Consensus
miRseq_Mature_Clustering_CNMF
miRseq_Mature_Clustering_Consensus
miRseq_Mature_Preprocess
miRseq_Preprocess
miR_Clustering_CNMF
miR_Clustering_Consensus
miR_FindDirectTargets
mRNAseq_Clustering_CNMF
mRNAseq_Clustering_Consensus
mRNA_Clustering_CNMF
mRNA_Clustering_Consensus
mRNA_Preprocess_Median
Mutation_Assessor
MutSigNozzleReport1.5
MutSigNozzleReport2.0
MutSigNozzleReportCV
MutSigNozzleReportMerged
MutSigPreprocess1.5
MutSigPreprocess2.0
MutSigRun1.5
MutSigRun2.0
MutSigRunCV
ParadigmPreprocess_mRNA
ParadigmPreprocess_RNASeq
Paradigm_mRNA
Paradigm_mRNA_And_CopyNumber
Paradigm_Prepare_mRNA
Paradigm_Prepare_mRNA_And_Copy_Number
Paradigm_Prepare_RNASeq
Paradigm_Prepare_RNASeq_And_Copy_Number
Paradigm_Preprocess_mRNA
Paradigm_Preprocess_mRNA_And_Copy_Number
Paradigm_Preprocess_RNASeq
Paradigm_Preprocess_RNASeq_And_Copy_Number
Paradigm_Report_Preprocess_mRNA
Paradigm_Report_Preprocess_mRNA_And_CopyNumber
Paradigm_Report_Preprocess_RNASeq
Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
Paradigm_RNASeq
Paradigm_RNASeq_And_Copy_Number
Pathway_FindEnrichedGenes
Pathway_Hotnet
Pathway_Paradigm_mRNA
Pathway_Paradigm_mRNA_And_Copy_Number
Pathway_Paradigm_RNASeq
Pathway_Paradigm_RNASeq_And_Copy_Number
ProcessCoverageForMutSig1.5
ProcessCoverageForMutSig2.0
RPPA_Clustering_CNMF
RPPA_Clustering_Consensus
Clinical_Pick_Tier1
CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
Merge_Clinical
Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data
Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data
Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data
Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data
Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data
Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data
Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
mRNAseq_Preprocess
Mutation_Packager_Calls
Mutation_Packager_Coverage
RPPA_AnnotateWithGene
TP_NON_HistologicalType_Other-Add_CustomClinical
TP_NON_HistologicalType_Other-Add_CustomEvents
TP_NON_HistologicalType_Other-Aggregate_Gene_Status
TP_NON_HistologicalType_Other-Aggregate_Molecular_Subtype_Clusters
TP_NON_HistologicalType_Other-CoMut1.5
TP_NON_HistologicalType_Other-CoMut2.0
TP_NON_HistologicalType_Other-CoMutCV
TP_NON_HistologicalType_Other-CoMutMerged
TP_NON_HistologicalType_Other-CopyNumber_Clustering_CNMF
TP_NON_HistologicalType_Other-CopyNumber_Clustering_CNMF_armlevel
TP_NON_HistologicalType_Other-CopyNumber_Gistic2
TP_NON_HistologicalType_Other-CopyNumber_Gistic2_Postprocess_Focal
TP_NON_HistologicalType_Other-Correlate_Clinical_vs_CopyNumber_Arm
TP_NON_HistologicalType_Other-Correlate_Clinical_vs_CopyNumber_Focal
TP_NON_HistologicalType_Other-Correlate_Clinical_vs_CustomEvents
TP_NON_HistologicalType_Other-Correlate_Clinical_vs_Methylation
TP_NON_HistologicalType_Other-Correlate_Clinical_vs_miR
TP_NON_HistologicalType_Other-Correlate_Clinical_vs_miRseq
TP_NON_HistologicalType_Other-Correlate_Clinical_vs_Molecular_Subtypes
TP_NON_HistologicalType_Other-Correlate_Clinical_vs_mRNA
TP_NON_HistologicalType_Other-Correlate_Clinical_vs_mRNAseq
TP_NON_HistologicalType_Other-Correlate_Clinical_vs_Mutation
TP_NON_HistologicalType_Other-Correlate_Clinical_vs_RPPA
TP_NON_HistologicalType_Other-Correlate_CopyNumber_vs_miR
TP_NON_HistologicalType_Other-Correlate_CopyNumber_vs_mRNA
TP_NON_HistologicalType_Other-Correlate_CopyNumber_vs_mRNAseq
TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_CopyNumber_Arm
TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_CopyNumber_Focal
TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_CustomEvents
TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_Methylation
TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_miRseq
TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_Molecular_Subtypes
TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_mRNAseq
TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_Mutation
TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_RPPA
TP_NON_HistologicalType_Other-Correlate_Methylation_vs_mRNA
TP_NON_HistologicalType_Other-Correlate_molecularSubtype_vs_CopyNumber_Arm
TP_NON_HistologicalType_Other-Correlate_molecularSubtype_vs_CopyNumber_Focal
TP_NON_HistologicalType_Other-Correlate_molecularSubtype_vs_Mutation
TP_NON_HistologicalType_Other-expanded_coMutPlot
TP_NON_HistologicalType_Other-GenerateStickFigures1.5
TP_NON_HistologicalType_Other-GenerateStickFigures2.0
TP_NON_HistologicalType_Other-GenerateStickFiguresCV
TP_NON_HistologicalType_Other-GenerateStickFiguresMerged
TP_NON_HistologicalType_Other-LegoPlotter1.5
TP_NON_HistologicalType_Other-LegoPlotter2.0
TP_NON_HistologicalType_Other-LegoPlotterCV
TP_NON_HistologicalType_Other-LegoPlotterMerged
TP_NON_HistologicalType_Other-MergeMutSigRunResults
TP_NON_HistologicalType_Other-Methylation_Clustering_CNMF
TP_NON_HistologicalType_Other-Methylation_Preprocess
TP_NON_HistologicalType_Other-miRseq_Clustering_CNMF
TP_NON_HistologicalType_Other-miRseq_Clustering_Consensus
TP_NON_HistologicalType_Other-miRseq_Mature_Clustering_CNMF
TP_NON_HistologicalType_Other-miRseq_Mature_Clustering_Consensus
TP_NON_HistologicalType_Other-miRseq_Mature_Preprocess
TP_NON_HistologicalType_Other-miRseq_Preprocess
TP_NON_HistologicalType_Other-miR_Clustering_CNMF
TP_NON_HistologicalType_Other-miR_Clustering_Consensus
TP_NON_HistologicalType_Other-miR_FindDirectTargets
TP_NON_HistologicalType_Other-mRNAseq_Clustering_CNMF
TP_NON_HistologicalType_Other-mRNAseq_Clustering_Consensus
TP_NON_HistologicalType_Other-mRNA_Clustering_CNMF
TP_NON_HistologicalType_Other-mRNA_Clustering_Consensus
TP_NON_HistologicalType_Other-mRNA_Preprocess_Median
TP_NON_HistologicalType_Other-Mutation_Assessor
TP_NON_HistologicalType_Other-MutSigNozzleReport1.5
TP_NON_HistologicalType_Other-MutSigNozzleReport2.0
TP_NON_HistologicalType_Other-MutSigNozzleReportCV
TP_NON_HistologicalType_Other-MutSigNozzleReportMerged
TP_NON_HistologicalType_Other-MutSigPreprocess1.5
TP_NON_HistologicalType_Other-MutSigPreprocess2.0
TP_NON_HistologicalType_Other-MutSigRun1.5
TP_NON_HistologicalType_Other-MutSigRun2.0
TP_NON_HistologicalType_Other-MutSigRunCV
TP_NON_HistologicalType_Other-ParadigmPreprocess_mRNA
TP_NON_HistologicalType_Other-ParadigmPreprocess_RNASeq
TP_NON_HistologicalType_Other-Paradigm_mRNA
TP_NON_HistologicalType_Other-Paradigm_mRNA_And_CopyNumber
TP_NON_HistologicalType_Other-Paradigm_Prepare_mRNA
TP_NON_HistologicalType_Other-Paradigm_Prepare_mRNA_And_Copy_Number
TP_NON_HistologicalType_Other-Paradigm_Prepare_RNASeq
TP_NON_HistologicalType_Other-Paradigm_Prepare_RNASeq_And_Copy_Number
TP_NON_HistologicalType_Other-Paradigm_Preprocess_mRNA
TP_NON_HistologicalType_Other-Paradigm_Preprocess_mRNA_And_Copy_Number
TP_NON_HistologicalType_Other-Paradigm_Preprocess_RNASeq
TP_NON_HistologicalType_Other-Paradigm_Preprocess_RNASeq_And_Copy_Number
TP_NON_HistologicalType_Other-Paradigm_Report_Preprocess_mRNA
TP_NON_HistologicalType_Other-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
TP_NON_HistologicalType_Other-Paradigm_Report_Preprocess_RNASeq
TP_NON_HistologicalType_Other-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
TP_NON_HistologicalType_Other-Paradigm_RNASeq
TP_NON_HistologicalType_Other-Paradigm_RNASeq_And_Copy_Number
TP_NON_HistologicalType_Other-Pathway_FindEnrichedGenes
TP_NON_HistologicalType_Other-Pathway_Hotnet
TP_NON_HistologicalType_Other-Pathway_Paradigm_mRNA
TP_NON_HistologicalType_Other-Pathway_Paradigm_mRNA_And_Copy_Number
TP_NON_HistologicalType_Other-Pathway_Paradigm_RNASeq
TP_NON_HistologicalType_Other-Pathway_Paradigm_RNASeq_And_Copy_Number
TP_NON_HistologicalType_Other-ProcessCoverageForMutSig1.5
TP_NON_HistologicalType_Other-ProcessCoverageForMutSig2.0
TP_NON_HistologicalType_Other-RPPA_Clustering_CNMF
TP_NON_HistologicalType_Other-RPPA_Clustering_Consensus
TP_NON_HistologicalType_Other-Clinical_Pick_Tier1
TP_NON_HistologicalType_Other-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
TP_NON_HistologicalType_Other-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
TP_NON_HistologicalType_Other-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
TP_NON_HistologicalType_Other-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
TP_NON_HistologicalType_Other-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
TP_NON_HistologicalType_Other-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
TP_NON_HistologicalType_Other-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
TP_NON_HistologicalType_Other-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
TP_NON_HistologicalType_Other-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
TP_NON_HistologicalType_Other-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
TP_NON_HistologicalType_Other-Merge_Clinical
TP_NON_HistologicalType_Other-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
TP_NON_HistologicalType_Other-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
TP_NON_HistologicalType_Other-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
TP_NON_HistologicalType_Other-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
TP_NON_HistologicalType_Other-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
TP_NON_HistologicalType_Other-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
TP_NON_HistologicalType_Other-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
TP_NON_HistologicalType_Other-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
TP_NON_HistologicalType_Other-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
TP_NON_HistologicalType_Other-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
TP_NON_HistologicalType_Other-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
TP_NON_HistologicalType_Other-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
TP_NON_HistologicalType_Other-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
TP_NON_HistologicalType_Other-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
TP_NON_HistologicalType_Other-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
TP_NON_HistologicalType_Other-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
TP_NON_HistologicalType_Other-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
TP_NON_HistologicalType_Other-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
TP_NON_HistologicalType_Other-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
TP_NON_HistologicalType_Other-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
TP_NON_HistologicalType_Other-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
TP_NON_HistologicalType_Other-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
TP_NON_HistologicalType_Other-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
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TM-Correlate_CustomClinical_vs_Molecular_Subtypes
TM-Correlate_CustomClinical_vs_mRNAseq
TM-Correlate_CustomClinical_vs_Mutation
TM-Correlate_CustomClinical_vs_RPPA
TM-Correlate_Methylation_vs_mRNA
TM-Correlate_molecularSubtype_vs_CopyNumber_Arm
TM-Correlate_molecularSubtype_vs_CopyNumber_Focal
TM-Correlate_molecularSubtype_vs_Mutation
TM-expanded_coMutPlot
TM-GenerateStickFigures1.5
TM-GenerateStickFigures2.0
TM-GenerateStickFiguresCV
TM-GenerateStickFiguresMerged
TM-LegoPlotter1.5
TM-LegoPlotter2.0
TM-LegoPlotterCV
TM-LegoPlotterMerged
TM-MergeMutSigRunResults
TM-Methylation_Clustering_CNMF
TM-Methylation_Preprocess
TM-miRseq_Clustering_CNMF
TM-miRseq_Clustering_Consensus
TM-miRseq_Mature_Clustering_CNMF
TM-miRseq_Mature_Clustering_Consensus
TM-miRseq_Mature_Preprocess
TM-miRseq_Preprocess
TM-miR_Clustering_CNMF
TM-miR_Clustering_Consensus
TM-miR_FindDirectTargets
TM-mRNAseq_Clustering_CNMF
TM-mRNAseq_Clustering_Consensus
TM-mRNA_Clustering_CNMF
TM-mRNA_Clustering_Consensus
TM-mRNA_Preprocess_Median
TM-Mutation_Assessor
TM-MutSigNozzleReport1.5
TM-MutSigNozzleReport2.0
TM-MutSigNozzleReportCV
TM-MutSigNozzleReportMerged
TM-MutSigPreprocess1.5
TM-MutSigPreprocess2.0
TM-MutSigRun1.5
TM-MutSigRun2.0
TM-MutSigRunCV
TM-ParadigmPreprocess_mRNA
TM-ParadigmPreprocess_RNASeq
TM-Paradigm_mRNA
TM-Paradigm_mRNA_And_CopyNumber
TM-Paradigm_Prepare_mRNA
TM-Paradigm_Prepare_mRNA_And_Copy_Number
TM-Paradigm_Prepare_RNASeq
TM-Paradigm_Prepare_RNASeq_And_Copy_Number
TM-Paradigm_Preprocess_mRNA
TM-Paradigm_Preprocess_mRNA_And_Copy_Number
TM-Paradigm_Preprocess_RNASeq
TM-Paradigm_Preprocess_RNASeq_And_Copy_Number
TM-Paradigm_Report_Preprocess_mRNA
TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
TM-Paradigm_Report_Preprocess_RNASeq
TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
TM-Paradigm_RNASeq
TM-Paradigm_RNASeq_And_Copy_Number
TM-Pathway_FindEnrichedGenes
TM-Pathway_Hotnet
TM-Pathway_Paradigm_mRNA
TM-Pathway_Paradigm_mRNA_And_Copy_Number
TM-Pathway_Paradigm_RNASeq
TM-Pathway_Paradigm_RNASeq_And_Copy_Number
TM-ProcessCoverageForMutSig1.5
TM-ProcessCoverageForMutSig2.0
TM-RPPA_Clustering_CNMF
TM-RPPA_Clustering_Consensus
TM-Clinical_Pick_Tier1
TM-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
TM-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
TM-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
TM-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
TM-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
TM-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
TM-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
TM-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
TM-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
TM-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
TM-Merge_Clinical
TM-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
TM-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
TM-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
TM-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
TM-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
TM-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
TM-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
TM-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
TM-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
TM-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
TM-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
TM-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
TM-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
TM-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
TM-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
TM-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
TM-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
TM-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
TM-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
TM-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
TM-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
TM-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
TM-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
TM-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
TM-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
TM-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data
TM-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data
TM-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
TM-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
TM-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
TM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
TM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
TM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
TM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
TM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
TM-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
TM-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
TM-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
TM-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
TM-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
TM-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
TM-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
TM-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
TM-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
TM-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
TM-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
TM-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data
TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data
TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data
TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data
TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data
TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
TM-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data
TM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data
TM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
TM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data
TM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data
TM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data
TM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data
TM-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
TM-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
TM-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
TM-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data
TM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data
TM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
TM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data
TM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data
TM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data
TM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data
TM-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
TM-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
TM-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
TM-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
TM-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
TM-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
TM-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
TM-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
TM-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
TM-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
TM-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
TM-mRNAseq_Preprocess
TM-Mutation_Packager_Calls
TM-Mutation_Packager_Coverage
TM-RPPA_AnnotateWithGene
RiskCategory_Low-Add_CustomClinical
RiskCategory_Low-Add_CustomEvents
RiskCategory_Low-Aggregate_Gene_Status
RiskCategory_Low-Aggregate_Molecular_Subtype_Clusters
RiskCategory_Low-CoMut1.5
RiskCategory_Low-CoMut2.0
RiskCategory_Low-CoMutCV
RiskCategory_Low-CoMutMerged
RiskCategory_Low-CopyNumber_Clustering_CNMF
RiskCategory_Low-CopyNumber_Clustering_CNMF_armlevel
RiskCategory_Low-CopyNumber_Gistic2
RiskCategory_Low-CopyNumber_Gistic2_Postprocess_Focal
RiskCategory_Low-Correlate_Clinical_vs_CopyNumber_Arm
RiskCategory_Low-Correlate_Clinical_vs_CopyNumber_Focal
RiskCategory_Low-Correlate_Clinical_vs_CustomEvents
RiskCategory_Low-Correlate_Clinical_vs_Methylation
RiskCategory_Low-Correlate_Clinical_vs_miR
RiskCategory_Low-Correlate_Clinical_vs_miRseq
RiskCategory_Low-Correlate_Clinical_vs_Molecular_Subtypes
RiskCategory_Low-Correlate_Clinical_vs_mRNA
RiskCategory_Low-Correlate_Clinical_vs_mRNAseq
RiskCategory_Low-Correlate_Clinical_vs_Mutation
RiskCategory_Low-Correlate_Clinical_vs_RPPA
RiskCategory_Low-Correlate_CopyNumber_vs_miR
RiskCategory_Low-Correlate_CopyNumber_vs_mRNA
RiskCategory_Low-Correlate_CopyNumber_vs_mRNAseq
RiskCategory_Low-Correlate_CustomClinical_vs_CopyNumber_Arm
RiskCategory_Low-Correlate_CustomClinical_vs_CopyNumber_Focal
RiskCategory_Low-Correlate_CustomClinical_vs_CustomEvents
RiskCategory_Low-Correlate_CustomClinical_vs_Methylation
RiskCategory_Low-Correlate_CustomClinical_vs_miRseq
RiskCategory_Low-Correlate_CustomClinical_vs_Molecular_Subtypes
RiskCategory_Low-Correlate_CustomClinical_vs_mRNAseq
RiskCategory_Low-Correlate_CustomClinical_vs_Mutation
RiskCategory_Low-Correlate_CustomClinical_vs_RPPA
RiskCategory_Low-Correlate_Methylation_vs_mRNA
RiskCategory_Low-Correlate_molecularSubtype_vs_CopyNumber_Arm
RiskCategory_Low-Correlate_molecularSubtype_vs_CopyNumber_Focal
RiskCategory_Low-Correlate_molecularSubtype_vs_Mutation
RiskCategory_Low-expanded_coMutPlot
RiskCategory_Low-GenerateStickFigures1.5
RiskCategory_Low-GenerateStickFigures2.0
RiskCategory_Low-GenerateStickFiguresCV
RiskCategory_Low-GenerateStickFiguresMerged
RiskCategory_Low-LegoPlotter1.5
RiskCategory_Low-LegoPlotter2.0
RiskCategory_Low-LegoPlotterCV
RiskCategory_Low-LegoPlotterMerged
RiskCategory_Low-MergeMutSigRunResults
RiskCategory_Low-Methylation_Clustering_CNMF
RiskCategory_Low-Methylation_Preprocess
RiskCategory_Low-miRseq_Clustering_CNMF
RiskCategory_Low-miRseq_Clustering_Consensus
RiskCategory_Low-miRseq_Mature_Clustering_CNMF
RiskCategory_Low-miRseq_Mature_Clustering_Consensus
RiskCategory_Low-miRseq_Mature_Preprocess
RiskCategory_Low-miRseq_Preprocess
RiskCategory_Low-miR_Clustering_CNMF
RiskCategory_Low-miR_Clustering_Consensus
RiskCategory_Low-miR_FindDirectTargets
RiskCategory_Low-mRNAseq_Clustering_CNMF
RiskCategory_Low-mRNAseq_Clustering_Consensus
RiskCategory_Low-mRNA_Clustering_CNMF
RiskCategory_Low-mRNA_Clustering_Consensus
RiskCategory_Low-mRNA_Preprocess_Median
RiskCategory_Low-Mutation_Assessor
RiskCategory_Low-MutSigNozzleReport1.5
RiskCategory_Low-MutSigNozzleReport2.0
RiskCategory_Low-MutSigNozzleReportCV
RiskCategory_Low-MutSigNozzleReportMerged
RiskCategory_Low-MutSigPreprocess1.5
RiskCategory_Low-MutSigPreprocess2.0
RiskCategory_Low-MutSigRun1.5
RiskCategory_Low-MutSigRun2.0
RiskCategory_Low-MutSigRunCV
RiskCategory_Low-ParadigmPreprocess_mRNA
RiskCategory_Low-ParadigmPreprocess_RNASeq
RiskCategory_Low-Paradigm_mRNA
RiskCategory_Low-Paradigm_mRNA_And_CopyNumber
RiskCategory_Low-Paradigm_Prepare_mRNA
RiskCategory_Low-Paradigm_Prepare_mRNA_And_Copy_Number
RiskCategory_Low-Paradigm_Prepare_RNASeq
RiskCategory_Low-Paradigm_Prepare_RNASeq_And_Copy_Number
RiskCategory_Low-Paradigm_Preprocess_mRNA
RiskCategory_Low-Paradigm_Preprocess_mRNA_And_Copy_Number
RiskCategory_Low-Paradigm_Preprocess_RNASeq
RiskCategory_Low-Paradigm_Preprocess_RNASeq_And_Copy_Number
RiskCategory_Low-Paradigm_Report_Preprocess_mRNA
RiskCategory_Low-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
RiskCategory_Low-Paradigm_Report_Preprocess_RNASeq
RiskCategory_Low-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
RiskCategory_Low-Paradigm_RNASeq
RiskCategory_Low-Paradigm_RNASeq_And_Copy_Number
RiskCategory_Low-Pathway_FindEnrichedGenes
RiskCategory_Low-Pathway_Hotnet
RiskCategory_Low-Pathway_Paradigm_mRNA
RiskCategory_Low-Pathway_Paradigm_mRNA_And_Copy_Number
RiskCategory_Low-Pathway_Paradigm_RNASeq
RiskCategory_Low-Pathway_Paradigm_RNASeq_And_Copy_Number
RiskCategory_Low-ProcessCoverageForMutSig1.5
RiskCategory_Low-ProcessCoverageForMutSig2.0
RiskCategory_Low-RPPA_Clustering_CNMF
RiskCategory_Low-RPPA_Clustering_Consensus
RiskCategory_Low-Clinical_Pick_Tier1
RiskCategory_Low-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
RiskCategory_Low-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
RiskCategory_Low-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
RiskCategory_Low-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
RiskCategory_Low-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
RiskCategory_Low-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
RiskCategory_Low-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
RiskCategory_Low-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
RiskCategory_Low-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
RiskCategory_Low-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
RiskCategory_Low-Merge_Clinical
RiskCategory_Low-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
RiskCategory_Low-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
RiskCategory_Low-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
RiskCategory_Low-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
RiskCategory_Low-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
RiskCategory_Low-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
RiskCategory_Low-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
RiskCategory_Low-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
RiskCategory_Low-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
RiskCategory_Low-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
RiskCategory_Low-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
RiskCategory_Low-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
RiskCategory_Low-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
RiskCategory_Low-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
RiskCategory_Low-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
RiskCategory_Low-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
RiskCategory_Low-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
RiskCategory_Low-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
RiskCategory_Low-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
RiskCategory_Low-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
RiskCategory_Low-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
RiskCategory_Low-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
RiskCategory_Low-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
RiskCategory_Low-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
RiskCategory_Low-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
RiskCategory_Low-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data
RiskCategory_Low-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data
RiskCategory_Low-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
RiskCategory_Low-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
RiskCategory_Low-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
RiskCategory_Low-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
RiskCategory_Low-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
RiskCategory_Low-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
RiskCategory_Low-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
RiskCategory_Low-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
RiskCategory_Low-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
RiskCategory_Low-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
RiskCategory_Low-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
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RiskCategory_Low-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
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RiskCategory_Intermediate-CoMut2.0
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RiskCategory_Intermediate-Correlate_Clinical_vs_CopyNumber_Arm
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RiskCategory_Intermediate-Correlate_CustomClinical_vs_CopyNumber_Arm
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RiskCategory_Intermediate-Correlate_molecularSubtype_vs_Mutation
RiskCategory_Intermediate-expanded_coMutPlot
RiskCategory_Intermediate-GenerateStickFigures1.5
RiskCategory_Intermediate-GenerateStickFigures2.0
RiskCategory_Intermediate-GenerateStickFiguresCV
RiskCategory_Intermediate-GenerateStickFiguresMerged
RiskCategory_Intermediate-LegoPlotter1.5
RiskCategory_Intermediate-LegoPlotter2.0
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RiskCategory_Intermediate-LegoPlotterMerged
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RiskCategory_Intermediate-Methylation_Clustering_CNMF
RiskCategory_Intermediate-Methylation_Preprocess
RiskCategory_Intermediate-miRseq_Clustering_CNMF
RiskCategory_Intermediate-miRseq_Clustering_Consensus
RiskCategory_Intermediate-miRseq_Mature_Clustering_CNMF
RiskCategory_Intermediate-miRseq_Mature_Clustering_Consensus
RiskCategory_Intermediate-miRseq_Mature_Preprocess
RiskCategory_Intermediate-miRseq_Preprocess
RiskCategory_Intermediate-miR_Clustering_CNMF
RiskCategory_Intermediate-miR_Clustering_Consensus
RiskCategory_Intermediate-miR_FindDirectTargets
RiskCategory_Intermediate-mRNAseq_Clustering_CNMF
RiskCategory_Intermediate-mRNAseq_Clustering_Consensus
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RiskCategory_Intermediate-mRNA_Clustering_Consensus
RiskCategory_Intermediate-mRNA_Preprocess_Median
RiskCategory_Intermediate-Mutation_Assessor
RiskCategory_Intermediate-MutSigNozzleReport1.5
RiskCategory_Intermediate-MutSigNozzleReport2.0
RiskCategory_Intermediate-MutSigNozzleReportCV
RiskCategory_Intermediate-MutSigNozzleReportMerged
RiskCategory_Intermediate-MutSigPreprocess1.5
RiskCategory_Intermediate-MutSigPreprocess2.0
RiskCategory_Intermediate-MutSigRun1.5
RiskCategory_Intermediate-MutSigRun2.0
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RiskCategory_Intermediate-ParadigmPreprocess_mRNA
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RiskCategory_Intermediate-Paradigm_Prepare_mRNA
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RiskCategory_Intermediate-Paradigm_Preprocess_mRNA
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RiskCategory_Intermediate-Paradigm_Preprocess_RNASeq
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RiskCategory_Intermediate-Paradigm_Report_Preprocess_mRNA
RiskCategory_Intermediate-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
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RiskCategory_Intermediate-Pathway_FindEnrichedGenes
RiskCategory_Intermediate-Pathway_Hotnet
RiskCategory_Intermediate-Pathway_Paradigm_mRNA
RiskCategory_Intermediate-Pathway_Paradigm_mRNA_And_Copy_Number
RiskCategory_Intermediate-Pathway_Paradigm_RNASeq
RiskCategory_Intermediate-Pathway_Paradigm_RNASeq_And_Copy_Number
RiskCategory_Intermediate-ProcessCoverageForMutSig1.5
RiskCategory_Intermediate-ProcessCoverageForMutSig2.0
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RiskCategory_Intermediate-Clinical_Pick_Tier1
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RiskCategory_Intermediate-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
RiskCategory_Intermediate-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
RiskCategory_Intermediate-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
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RiskCategory_High-Correlate_Clinical_vs_mRNA
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RiskCategory_High-Correlate_Clinical_vs_Mutation
RiskCategory_High-Correlate_Clinical_vs_RPPA
RiskCategory_High-Correlate_CopyNumber_vs_miR
RiskCategory_High-Correlate_CopyNumber_vs_mRNA
RiskCategory_High-Correlate_CopyNumber_vs_mRNAseq
RiskCategory_High-Correlate_CustomClinical_vs_CopyNumber_Arm
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RiskCategory_High-Correlate_CustomClinical_vs_Mutation
RiskCategory_High-Correlate_CustomClinical_vs_RPPA
RiskCategory_High-Correlate_Methylation_vs_mRNA
RiskCategory_High-Correlate_molecularSubtype_vs_CopyNumber_Arm
RiskCategory_High-Correlate_molecularSubtype_vs_CopyNumber_Focal
RiskCategory_High-Correlate_molecularSubtype_vs_Mutation
RiskCategory_High-expanded_coMutPlot
RiskCategory_High-GenerateStickFigures1.5
RiskCategory_High-GenerateStickFigures2.0
RiskCategory_High-GenerateStickFiguresCV
RiskCategory_High-GenerateStickFiguresMerged
RiskCategory_High-LegoPlotter1.5
RiskCategory_High-LegoPlotter2.0
RiskCategory_High-LegoPlotterCV
RiskCategory_High-LegoPlotterMerged
RiskCategory_High-MergeMutSigRunResults
RiskCategory_High-Methylation_Clustering_CNMF
RiskCategory_High-Methylation_Preprocess
RiskCategory_High-miRseq_Clustering_CNMF
RiskCategory_High-miRseq_Clustering_Consensus
RiskCategory_High-miRseq_Mature_Clustering_CNMF
RiskCategory_High-miRseq_Mature_Clustering_Consensus
RiskCategory_High-miRseq_Mature_Preprocess
RiskCategory_High-miRseq_Preprocess
RiskCategory_High-miR_Clustering_CNMF
RiskCategory_High-miR_Clustering_Consensus
RiskCategory_High-miR_FindDirectTargets
RiskCategory_High-mRNAseq_Clustering_CNMF
RiskCategory_High-mRNAseq_Clustering_Consensus
RiskCategory_High-mRNA_Clustering_CNMF
RiskCategory_High-mRNA_Clustering_Consensus
RiskCategory_High-mRNA_Preprocess_Median
RiskCategory_High-Mutation_Assessor
RiskCategory_High-MutSigNozzleReport1.5
RiskCategory_High-MutSigNozzleReport2.0
RiskCategory_High-MutSigNozzleReportCV
RiskCategory_High-MutSigNozzleReportMerged
RiskCategory_High-MutSigPreprocess1.5
RiskCategory_High-MutSigPreprocess2.0
RiskCategory_High-MutSigRun1.5
RiskCategory_High-MutSigRun2.0
RiskCategory_High-MutSigRunCV
RiskCategory_High-ParadigmPreprocess_mRNA
RiskCategory_High-ParadigmPreprocess_RNASeq
RiskCategory_High-Paradigm_mRNA
RiskCategory_High-Paradigm_mRNA_And_CopyNumber
RiskCategory_High-Paradigm_Prepare_mRNA
RiskCategory_High-Paradigm_Prepare_mRNA_And_Copy_Number
RiskCategory_High-Paradigm_Prepare_RNASeq
RiskCategory_High-Paradigm_Prepare_RNASeq_And_Copy_Number
RiskCategory_High-Paradigm_Preprocess_mRNA
RiskCategory_High-Paradigm_Preprocess_mRNA_And_Copy_Number
RiskCategory_High-Paradigm_Preprocess_RNASeq
RiskCategory_High-Paradigm_Preprocess_RNASeq_And_Copy_Number
RiskCategory_High-Paradigm_Report_Preprocess_mRNA
RiskCategory_High-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
RiskCategory_High-Paradigm_Report_Preprocess_RNASeq
RiskCategory_High-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
RiskCategory_High-Paradigm_RNASeq
RiskCategory_High-Paradigm_RNASeq_And_Copy_Number
RiskCategory_High-Pathway_FindEnrichedGenes
RiskCategory_High-Pathway_Hotnet
RiskCategory_High-Pathway_Paradigm_mRNA
RiskCategory_High-Pathway_Paradigm_mRNA_And_Copy_Number
RiskCategory_High-Pathway_Paradigm_RNASeq
RiskCategory_High-Pathway_Paradigm_RNASeq_And_Copy_Number
RiskCategory_High-ProcessCoverageForMutSig1.5
RiskCategory_High-ProcessCoverageForMutSig2.0
RiskCategory_High-RPPA_Clustering_CNMF
RiskCategory_High-RPPA_Clustering_Consensus
RiskCategory_High-Clinical_Pick_Tier1
RiskCategory_High-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
RiskCategory_High-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
RiskCategory_High-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
RiskCategory_High-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
RiskCategory_High-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
RiskCategory_High-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
RiskCategory_High-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
RiskCategory_High-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
RiskCategory_High-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
RiskCategory_High-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
RiskCategory_High-Merge_Clinical
RiskCategory_High-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
RiskCategory_High-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
RiskCategory_High-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
RiskCategory_High-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
RiskCategory_High-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
RiskCategory_High-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
RiskCategory_High-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
RiskCategory_High-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
RiskCategory_High-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
RiskCategory_High-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
RiskCategory_High-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
RiskCategory_High-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
RiskCategory_High-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
RiskCategory_High-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
RiskCategory_High-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
RiskCategory_High-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
RiskCategory_High-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
RiskCategory_High-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
RiskCategory_High-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
RiskCategory_High-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
RiskCategory_High-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
RiskCategory_High-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
RiskCategory_High-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
RiskCategory_High-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
RiskCategory_High-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
RiskCategory_High-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data
RiskCategory_High-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data
RiskCategory_High-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
RiskCategory_High-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
RiskCategory_High-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
RiskCategory_High-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
RiskCategory_High-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
RiskCategory_High-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
RiskCategory_High-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
RiskCategory_High-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
RiskCategory_High-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
RiskCategory_High-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
RiskCategory_High-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
RiskCategory_High-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
RiskCategory_High-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
RiskCategory_High-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
RiskCategory_High-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
RiskCategory_High-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
RiskCategory_High-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
RiskCategory_High-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
RiskCategory_High-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
RiskCategory_High-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data
RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data
RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data
RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data
RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data
RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data
RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data
RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data
RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data
RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data
RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data
RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data
RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data
RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data
RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data
RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data
RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data
RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
RiskCategory_High-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
RiskCategory_High-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
RiskCategory_High-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
RiskCategory_High-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
RiskCategory_High-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
RiskCategory_High-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
RiskCategory_High-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
RiskCategory_High-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
RiskCategory_High-mRNAseq_Preprocess
RiskCategory_High-Mutation_Packager_Calls
RiskCategory_High-Mutation_Packager_Coverage
RiskCategory_High-RPPA_AnnotateWithGene
NT-Add_CustomClinical
NT-Add_CustomEvents
NT-Aggregate_Gene_Status
NT-Aggregate_Molecular_Subtype_Clusters
NT-CoMut1.5
NT-CoMut2.0
NT-CoMutCV
NT-CoMutMerged
NT-CopyNumber_Clustering_CNMF
NT-CopyNumber_Clustering_CNMF_armlevel
NT-CopyNumber_Gistic2
NT-CopyNumber_Gistic2_Postprocess_Focal
NT-Correlate_Clinical_vs_CopyNumber_Arm
NT-Correlate_Clinical_vs_CopyNumber_Focal
NT-Correlate_Clinical_vs_CustomEvents
NT-Correlate_Clinical_vs_Methylation
NT-Correlate_Clinical_vs_miR
NT-Correlate_Clinical_vs_miRseq
NT-Correlate_Clinical_vs_Molecular_Subtypes
NT-Correlate_Clinical_vs_mRNA
NT-Correlate_Clinical_vs_mRNAseq
NT-Correlate_Clinical_vs_Mutation
NT-Correlate_Clinical_vs_RPPA
NT-Correlate_CopyNumber_vs_miR
NT-Correlate_CopyNumber_vs_mRNA
NT-Correlate_CopyNumber_vs_mRNAseq
NT-Correlate_CustomClinical_vs_CopyNumber_Arm
NT-Correlate_CustomClinical_vs_CopyNumber_Focal
NT-Correlate_CustomClinical_vs_CustomEvents
NT-Correlate_CustomClinical_vs_Methylation
NT-Correlate_CustomClinical_vs_miRseq
NT-Correlate_CustomClinical_vs_Molecular_Subtypes
NT-Correlate_CustomClinical_vs_mRNAseq
NT-Correlate_CustomClinical_vs_Mutation
NT-Correlate_CustomClinical_vs_RPPA
NT-Correlate_Methylation_vs_mRNA
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
NT-Correlate_molecularSubtype_vs_Mutation
NT-expanded_coMutPlot
NT-GenerateStickFigures1.5
NT-GenerateStickFigures2.0
NT-GenerateStickFiguresCV
NT-GenerateStickFiguresMerged
NT-LegoPlotter1.5
NT-LegoPlotter2.0
NT-LegoPlotterCV
NT-LegoPlotterMerged
NT-MergeMutSigRunResults
NT-Methylation_Clustering_CNMF
NT-Methylation_Preprocess
NT-miRseq_Clustering_CNMF
NT-miRseq_Clustering_Consensus
NT-miRseq_Mature_Clustering_CNMF
NT-miRseq_Mature_Clustering_Consensus
NT-miRseq_Mature_Preprocess
NT-miRseq_Preprocess
NT-miR_Clustering_CNMF
NT-miR_Clustering_Consensus
NT-miR_FindDirectTargets
NT-mRNAseq_Clustering_CNMF
NT-mRNAseq_Clustering_Consensus
NT-mRNA_Clustering_CNMF
NT-mRNA_Clustering_Consensus
NT-mRNA_Preprocess_Median
NT-Mutation_Assessor
NT-MutSigNozzleReport1.5
NT-MutSigNozzleReport2.0
NT-MutSigNozzleReportCV
NT-MutSigNozzleReportMerged
NT-MutSigPreprocess1.5
NT-MutSigPreprocess2.0
NT-MutSigRun1.5
NT-MutSigRun2.0
NT-MutSigRunCV
NT-ParadigmPreprocess_mRNA
NT-ParadigmPreprocess_RNASeq
NT-Paradigm_mRNA
NT-Paradigm_mRNA_And_CopyNumber
NT-Paradigm_Prepare_mRNA
NT-Paradigm_Prepare_mRNA_And_Copy_Number
NT-Paradigm_Prepare_RNASeq
NT-Paradigm_Prepare_RNASeq_And_Copy_Number
NT-Paradigm_Preprocess_mRNA
NT-Paradigm_Preprocess_mRNA_And_Copy_Number
NT-Paradigm_Preprocess_RNASeq
NT-Paradigm_Preprocess_RNASeq_And_Copy_Number
NT-Paradigm_Report_Preprocess_mRNA
NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
NT-Paradigm_Report_Preprocess_RNASeq
NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
NT-Paradigm_RNASeq
NT-Paradigm_RNASeq_And_Copy_Number
NT-Pathway_FindEnrichedGenes
NT-Pathway_Hotnet
NT-Pathway_Paradigm_mRNA
NT-Pathway_Paradigm_mRNA_And_Copy_Number
NT-Pathway_Paradigm_RNASeq
NT-Pathway_Paradigm_RNASeq_And_Copy_Number
NT-ProcessCoverageForMutSig1.5
NT-ProcessCoverageForMutSig2.0
NT-RPPA_Clustering_CNMF
NT-RPPA_Clustering_Consensus
NT-Clinical_Pick_Tier1
NT-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
NT-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
NT-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
NT-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
NT-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
NT-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
NT-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
NT-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
NT-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
NT-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
NT-Merge_Clinical
NT-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
NT-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
NT-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
NT-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
NT-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
NT-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
NT-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
NT-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
NT-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
NT-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
NT-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
NT-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
NT-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
NT-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
NT-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
NT-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
NT-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
NT-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
NT-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
NT-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
NT-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
NT-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
NT-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
NT-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
NT-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data
NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data
NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
NT-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
NT-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
NT-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
NT-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
NT-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
NT-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
NT-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
NT-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
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NT-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
NT-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
NT-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data
NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data
NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data
NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data
NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data
NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
NT-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data
NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data
NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data
NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data
NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data
NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data
NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
NT-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data
NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data
NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data
NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data
NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data
NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data
NT-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
NT-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
NT-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
NT-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
NT-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
NT-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
NT-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
NT-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
NT-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
NT-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
NT-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
NT-mRNAseq_Preprocess
NT-Mutation_Packager_Calls
NT-Mutation_Packager_Coverage
NT-RPPA_AnnotateWithGene
NB-Add_CustomClinical
NB-Add_CustomEvents
NB-Aggregate_Gene_Status
NB-Aggregate_Molecular_Subtype_Clusters
NB-CoMut1.5
NB-CoMut2.0
NB-CoMutCV
NB-CoMutMerged
NB-CopyNumber_Clustering_CNMF
NB-CopyNumber_Clustering_CNMF_armlevel
NB-CopyNumber_Gistic2
NB-CopyNumber_Gistic2_Postprocess_Focal
NB-Correlate_Clinical_vs_CopyNumber_Arm
NB-Correlate_Clinical_vs_CopyNumber_Focal
NB-Correlate_Clinical_vs_CustomEvents
NB-Correlate_Clinical_vs_Methylation
NB-Correlate_Clinical_vs_miR
NB-Correlate_Clinical_vs_miRseq
NB-Correlate_Clinical_vs_Molecular_Subtypes
NB-Correlate_Clinical_vs_mRNA
NB-Correlate_Clinical_vs_mRNAseq
NB-Correlate_Clinical_vs_Mutation
NB-Correlate_Clinical_vs_RPPA
NB-Correlate_CopyNumber_vs_miR
NB-Correlate_CopyNumber_vs_mRNA
NB-Correlate_CopyNumber_vs_mRNAseq
NB-Correlate_CustomClinical_vs_CopyNumber_Arm
NB-Correlate_CustomClinical_vs_CopyNumber_Focal
NB-Correlate_CustomClinical_vs_CustomEvents
NB-Correlate_CustomClinical_vs_Methylation
NB-Correlate_CustomClinical_vs_miRseq
NB-Correlate_CustomClinical_vs_Molecular_Subtypes
NB-Correlate_CustomClinical_vs_mRNAseq
NB-Correlate_CustomClinical_vs_Mutation
NB-Correlate_CustomClinical_vs_RPPA
NB-Correlate_Methylation_vs_mRNA
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
NB-Correlate_molecularSubtype_vs_Mutation
NB-expanded_coMutPlot
NB-GenerateStickFigures1.5
NB-GenerateStickFigures2.0
NB-GenerateStickFiguresCV
NB-GenerateStickFiguresMerged
NB-LegoPlotter1.5
NB-LegoPlotter2.0
NB-LegoPlotterCV
NB-LegoPlotterMerged
NB-MergeMutSigRunResults
NB-Methylation_Clustering_CNMF
NB-Methylation_Preprocess
NB-miRseq_Clustering_CNMF
NB-miRseq_Clustering_Consensus
NB-miRseq_Mature_Clustering_CNMF
NB-miRseq_Mature_Clustering_Consensus
NB-miRseq_Mature_Preprocess
NB-miRseq_Preprocess
NB-miR_Clustering_CNMF
NB-miR_Clustering_Consensus
NB-miR_FindDirectTargets
NB-mRNAseq_Clustering_CNMF
NB-mRNAseq_Clustering_Consensus
NB-mRNA_Clustering_CNMF
NB-mRNA_Clustering_Consensus
NB-mRNA_Preprocess_Median
NB-Mutation_Assessor
NB-MutSigNozzleReport1.5
NB-MutSigNozzleReport2.0
NB-MutSigNozzleReportCV
NB-MutSigNozzleReportMerged
NB-MutSigPreprocess1.5
NB-MutSigPreprocess2.0
NB-MutSigRun1.5
NB-MutSigRun2.0
NB-MutSigRunCV
NB-ParadigmPreprocess_mRNA
NB-ParadigmPreprocess_RNASeq
NB-Paradigm_mRNA
NB-Paradigm_mRNA_And_CopyNumber
NB-Paradigm_Prepare_mRNA
NB-Paradigm_Prepare_mRNA_And_Copy_Number
NB-Paradigm_Prepare_RNASeq
NB-Paradigm_Prepare_RNASeq_And_Copy_Number
NB-Paradigm_Preprocess_mRNA
NB-Paradigm_Preprocess_mRNA_And_Copy_Number
NB-Paradigm_Preprocess_RNASeq
NB-Paradigm_Preprocess_RNASeq_And_Copy_Number
NB-Paradigm_Report_Preprocess_mRNA
NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
NB-Paradigm_Report_Preprocess_RNASeq
NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
NB-Paradigm_RNASeq
NB-Paradigm_RNASeq_And_Copy_Number
NB-Pathway_FindEnrichedGenes
NB-Pathway_Hotnet
NB-Pathway_Paradigm_mRNA
NB-Pathway_Paradigm_mRNA_And_Copy_Number
NB-Pathway_Paradigm_RNASeq
NB-Pathway_Paradigm_RNASeq_And_Copy_Number
NB-ProcessCoverageForMutSig1.5
NB-ProcessCoverageForMutSig2.0
NB-RPPA_Clustering_CNMF
NB-RPPA_Clustering_Consensus
NB-Clinical_Pick_Tier1
NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
NB-Merge_Clinical
NB-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
NB-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
NB-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
NB-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
NB-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
NB-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
NB-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
NB-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
NB-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
NB-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
NB-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
NB-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
NB-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
NB-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
NB-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
NB-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
NB-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
NB-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
NB-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
NB-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
NB-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
NB-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data
NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data
NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
NB-mRNAseq_Preprocess
NB-Mutation_Packager_Calls
NB-Mutation_Packager_Coverage
NB-RPPA_AnnotateWithGene
Mut_RAS-Add_CustomClinical
Mut_RAS-Add_CustomEvents
Mut_RAS-Aggregate_Gene_Status
Mut_RAS-Aggregate_Molecular_Subtype_Clusters
Mut_RAS-CoMut1.5
Mut_RAS-CoMut2.0
Mut_RAS-CoMutCV
Mut_RAS-CoMutMerged
Mut_RAS-CopyNumber_Clustering_CNMF
Mut_RAS-CopyNumber_Clustering_CNMF_armlevel
Mut_RAS-CopyNumber_Gistic2
Mut_RAS-CopyNumber_Gistic2_Postprocess_Focal
Mut_RAS-Correlate_Clinical_vs_CopyNumber_Arm
Mut_RAS-Correlate_Clinical_vs_CopyNumber_Focal
Mut_RAS-Correlate_Clinical_vs_CustomEvents
Mut_RAS-Correlate_Clinical_vs_Methylation
Mut_RAS-Correlate_Clinical_vs_miR
Mut_RAS-Correlate_Clinical_vs_miRseq
Mut_RAS-Correlate_Clinical_vs_Molecular_Subtypes
Mut_RAS-Correlate_Clinical_vs_mRNA
Mut_RAS-Correlate_Clinical_vs_mRNAseq
Mut_RAS-Correlate_Clinical_vs_Mutation
Mut_RAS-Correlate_Clinical_vs_RPPA
Mut_RAS-Correlate_CopyNumber_vs_miR
Mut_RAS-Correlate_CopyNumber_vs_mRNA
Mut_RAS-Correlate_CopyNumber_vs_mRNAseq
Mut_RAS-Correlate_CustomClinical_vs_CopyNumber_Arm
Mut_RAS-Correlate_CustomClinical_vs_CopyNumber_Focal
Mut_RAS-Correlate_CustomClinical_vs_CustomEvents
Mut_RAS-Correlate_CustomClinical_vs_Methylation
Mut_RAS-Correlate_CustomClinical_vs_miRseq
Mut_RAS-Correlate_CustomClinical_vs_Molecular_Subtypes
Mut_RAS-Correlate_CustomClinical_vs_mRNAseq
Mut_RAS-Correlate_CustomClinical_vs_Mutation
Mut_RAS-Correlate_CustomClinical_vs_RPPA
Mut_RAS-Correlate_Methylation_vs_mRNA
Mut_RAS-Correlate_molecularSubtype_vs_CopyNumber_Arm
Mut_RAS-Correlate_molecularSubtype_vs_CopyNumber_Focal
Mut_RAS-Correlate_molecularSubtype_vs_Mutation
Mut_RAS-expanded_coMutPlot
Mut_RAS-GenerateStickFigures1.5
Mut_RAS-GenerateStickFigures2.0
Mut_RAS-GenerateStickFiguresCV
Mut_RAS-GenerateStickFiguresMerged
Mut_RAS-LegoPlotter1.5
Mut_RAS-LegoPlotter2.0
Mut_RAS-LegoPlotterCV
Mut_RAS-LegoPlotterMerged
Mut_RAS-MergeMutSigRunResults
Mut_RAS-Methylation_Clustering_CNMF
Mut_RAS-Methylation_Preprocess
Mut_RAS-miRseq_Clustering_CNMF
Mut_RAS-miRseq_Clustering_Consensus
Mut_RAS-miRseq_Mature_Clustering_CNMF
Mut_RAS-miRseq_Mature_Clustering_Consensus
Mut_RAS-miRseq_Mature_Preprocess
Mut_RAS-miRseq_Preprocess
Mut_RAS-miR_Clustering_CNMF
Mut_RAS-miR_Clustering_Consensus
Mut_RAS-miR_FindDirectTargets
Mut_RAS-mRNAseq_Clustering_CNMF
Mut_RAS-mRNAseq_Clustering_Consensus
Mut_RAS-mRNA_Clustering_CNMF
Mut_RAS-mRNA_Clustering_Consensus
Mut_RAS-mRNA_Preprocess_Median
Mut_RAS-Mutation_Assessor
Mut_RAS-MutSigNozzleReport1.5
Mut_RAS-MutSigNozzleReport2.0
Mut_RAS-MutSigNozzleReportCV
Mut_RAS-MutSigNozzleReportMerged
Mut_RAS-MutSigPreprocess1.5
Mut_RAS-MutSigPreprocess2.0
Mut_RAS-MutSigRun1.5
Mut_RAS-MutSigRun2.0
Mut_RAS-MutSigRunCV
Mut_RAS-ParadigmPreprocess_mRNA
Mut_RAS-ParadigmPreprocess_RNASeq
Mut_RAS-Paradigm_mRNA
Mut_RAS-Paradigm_mRNA_And_CopyNumber
Mut_RAS-Paradigm_Prepare_mRNA
Mut_RAS-Paradigm_Prepare_mRNA_And_Copy_Number
Mut_RAS-Paradigm_Prepare_RNASeq
Mut_RAS-Paradigm_Prepare_RNASeq_And_Copy_Number
Mut_RAS-Paradigm_Preprocess_mRNA
Mut_RAS-Paradigm_Preprocess_mRNA_And_Copy_Number
Mut_RAS-Paradigm_Preprocess_RNASeq
Mut_RAS-Paradigm_Preprocess_RNASeq_And_Copy_Number
Mut_RAS-Paradigm_Report_Preprocess_mRNA
Mut_RAS-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
Mut_RAS-Paradigm_Report_Preprocess_RNASeq
Mut_RAS-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
Mut_RAS-Paradigm_RNASeq
Mut_RAS-Paradigm_RNASeq_And_Copy_Number
Mut_RAS-Pathway_FindEnrichedGenes
Mut_RAS-Pathway_Hotnet
Mut_RAS-Pathway_Paradigm_mRNA
Mut_RAS-Pathway_Paradigm_mRNA_And_Copy_Number
Mut_RAS-Pathway_Paradigm_RNASeq
Mut_RAS-Pathway_Paradigm_RNASeq_And_Copy_Number
Mut_RAS-ProcessCoverageForMutSig1.5
Mut_RAS-ProcessCoverageForMutSig2.0
Mut_RAS-RPPA_Clustering_CNMF
Mut_RAS-RPPA_Clustering_Consensus
Mut_RAS-Clinical_Pick_Tier1
Mut_RAS-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
Mut_RAS-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
Mut_RAS-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
Mut_RAS-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
Mut_RAS-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
Mut_RAS-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
Mut_RAS-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
Mut_RAS-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
Mut_RAS-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
Mut_RAS-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
Mut_RAS-Merge_Clinical
Mut_RAS-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
Mut_RAS-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
Mut_RAS-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
Mut_RAS-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
Mut_RAS-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
Mut_RAS-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
Mut_RAS-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
Mut_RAS-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
Mut_RAS-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
Mut_RAS-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
Mut_RAS-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
Mut_RAS-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
Mut_RAS-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
Mut_RAS-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
Mut_RAS-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
Mut_RAS-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
Mut_RAS-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
Mut_RAS-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
Mut_RAS-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
Mut_RAS-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
Mut_RAS-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
Mut_RAS-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
Mut_RAS-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
Mut_RAS-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
Mut_RAS-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
Mut_RAS-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data
Mut_RAS-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data
Mut_RAS-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
Mut_RAS-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
Mut_RAS-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
Mut_RAS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
Mut_RAS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
Mut_RAS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
Mut_RAS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
Mut_RAS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
Mut_RAS-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
Mut_RAS-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
Mut_RAS-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
Mut_RAS-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
Mut_RAS-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
Mut_RAS-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
Mut_RAS-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
Mut_RAS-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
Mut_RAS-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
Mut_RAS-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
Mut_RAS-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
Mut_RAS-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data
Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data
Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data
Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data
Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data
Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data
Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data
Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data
Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data
Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data
Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data
Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data
Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data
Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data
Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data
Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data
Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data
Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
Mut_RAS-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
Mut_RAS-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
Mut_RAS-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
Mut_RAS-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
Mut_RAS-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
Mut_RAS-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
Mut_RAS-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
Mut_RAS-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
Mut_RAS-mRNAseq_Preprocess
Mut_RAS-Mutation_Packager_Calls
Mut_RAS-Mutation_Packager_Coverage
Mut_RAS-RPPA_AnnotateWithGene
Mut_DARK-Add_CustomClinical
Mut_DARK-Add_CustomEvents
Mut_DARK-Aggregate_Gene_Status
Mut_DARK-Aggregate_Molecular_Subtype_Clusters
Mut_DARK-CoMut1.5
Mut_DARK-CoMut2.0
Mut_DARK-CoMutCV
Mut_DARK-CoMutMerged
Mut_DARK-CopyNumber_Clustering_CNMF
Mut_DARK-CopyNumber_Clustering_CNMF_armlevel
Mut_DARK-CopyNumber_Gistic2
Mut_DARK-CopyNumber_Gistic2_Postprocess_Focal
Mut_DARK-Correlate_Clinical_vs_CopyNumber_Arm
Mut_DARK-Correlate_Clinical_vs_CopyNumber_Focal
Mut_DARK-Correlate_Clinical_vs_CustomEvents
Mut_DARK-Correlate_Clinical_vs_Methylation
Mut_DARK-Correlate_Clinical_vs_miR
Mut_DARK-Correlate_Clinical_vs_miRseq
Mut_DARK-Correlate_Clinical_vs_Molecular_Subtypes
Mut_DARK-Correlate_Clinical_vs_mRNA
Mut_DARK-Correlate_Clinical_vs_mRNAseq
Mut_DARK-Correlate_Clinical_vs_Mutation
Mut_DARK-Correlate_Clinical_vs_RPPA
Mut_DARK-Correlate_CopyNumber_vs_miR
Mut_DARK-Correlate_CopyNumber_vs_mRNA
Mut_DARK-Correlate_CopyNumber_vs_mRNAseq
Mut_DARK-Correlate_CustomClinical_vs_CopyNumber_Arm
Mut_DARK-Correlate_CustomClinical_vs_CopyNumber_Focal
Mut_DARK-Correlate_CustomClinical_vs_CustomEvents
Mut_DARK-Correlate_CustomClinical_vs_Methylation
Mut_DARK-Correlate_CustomClinical_vs_miRseq
Mut_DARK-Correlate_CustomClinical_vs_Molecular_Subtypes
Mut_DARK-Correlate_CustomClinical_vs_mRNAseq
Mut_DARK-Correlate_CustomClinical_vs_Mutation
Mut_DARK-Correlate_CustomClinical_vs_RPPA
Mut_DARK-Correlate_Methylation_vs_mRNA
Mut_DARK-Correlate_molecularSubtype_vs_CopyNumber_Arm
Mut_DARK-Correlate_molecularSubtype_vs_CopyNumber_Focal
Mut_DARK-Correlate_molecularSubtype_vs_Mutation
Mut_DARK-expanded_coMutPlot
Mut_DARK-GenerateStickFigures1.5
Mut_DARK-GenerateStickFigures2.0
Mut_DARK-GenerateStickFiguresCV
Mut_DARK-GenerateStickFiguresMerged
Mut_DARK-LegoPlotter1.5
Mut_DARK-LegoPlotter2.0
Mut_DARK-LegoPlotterCV
Mut_DARK-LegoPlotterMerged
Mut_DARK-MergeMutSigRunResults
Mut_DARK-Methylation_Clustering_CNMF
Mut_DARK-Methylation_Preprocess
Mut_DARK-miRseq_Clustering_CNMF
Mut_DARK-miRseq_Clustering_Consensus
Mut_DARK-miRseq_Mature_Clustering_CNMF
Mut_DARK-miRseq_Mature_Clustering_Consensus
Mut_DARK-miRseq_Mature_Preprocess
Mut_DARK-miRseq_Preprocess
Mut_DARK-miR_Clustering_CNMF
Mut_DARK-miR_Clustering_Consensus
Mut_DARK-miR_FindDirectTargets
Mut_DARK-mRNAseq_Clustering_CNMF
Mut_DARK-mRNAseq_Clustering_Consensus
Mut_DARK-mRNA_Clustering_CNMF
Mut_DARK-mRNA_Clustering_Consensus
Mut_DARK-mRNA_Preprocess_Median
Mut_DARK-Mutation_Assessor
Mut_DARK-MutSigNozzleReport1.5
Mut_DARK-MutSigNozzleReport2.0
Mut_DARK-MutSigNozzleReportCV
Mut_DARK-MutSigNozzleReportMerged
Mut_DARK-MutSigPreprocess1.5
Mut_DARK-MutSigPreprocess2.0
Mut_DARK-MutSigRun1.5
Mut_DARK-MutSigRun2.0
Mut_DARK-MutSigRunCV
Mut_DARK-ParadigmPreprocess_mRNA
Mut_DARK-ParadigmPreprocess_RNASeq
Mut_DARK-Paradigm_mRNA
Mut_DARK-Paradigm_mRNA_And_CopyNumber
Mut_DARK-Paradigm_Prepare_mRNA
Mut_DARK-Paradigm_Prepare_mRNA_And_Copy_Number
Mut_DARK-Paradigm_Prepare_RNASeq
Mut_DARK-Paradigm_Prepare_RNASeq_And_Copy_Number
Mut_DARK-Paradigm_Preprocess_mRNA
Mut_DARK-Paradigm_Preprocess_mRNA_And_Copy_Number
Mut_DARK-Paradigm_Preprocess_RNASeq
Mut_DARK-Paradigm_Preprocess_RNASeq_And_Copy_Number
Mut_DARK-Paradigm_Report_Preprocess_mRNA
Mut_DARK-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
Mut_DARK-Paradigm_Report_Preprocess_RNASeq
Mut_DARK-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
Mut_DARK-Paradigm_RNASeq
Mut_DARK-Paradigm_RNASeq_And_Copy_Number
Mut_DARK-Pathway_FindEnrichedGenes
Mut_DARK-Pathway_Hotnet
Mut_DARK-Pathway_Paradigm_mRNA
Mut_DARK-Pathway_Paradigm_mRNA_And_Copy_Number
Mut_DARK-Pathway_Paradigm_RNASeq
Mut_DARK-Pathway_Paradigm_RNASeq_And_Copy_Number
Mut_DARK-ProcessCoverageForMutSig1.5
Mut_DARK-ProcessCoverageForMutSig2.0
Mut_DARK-RPPA_Clustering_CNMF
Mut_DARK-RPPA_Clustering_Consensus
Mut_DARK-Clinical_Pick_Tier1
Mut_DARK-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
Mut_DARK-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
Mut_DARK-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
Mut_DARK-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
Mut_DARK-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
Mut_DARK-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
Mut_DARK-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
Mut_DARK-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
Mut_DARK-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
Mut_DARK-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
Mut_DARK-Merge_Clinical
Mut_DARK-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
Mut_DARK-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
Mut_DARK-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
Mut_DARK-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
Mut_DARK-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
Mut_DARK-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
Mut_DARK-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
Mut_DARK-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
Mut_DARK-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
Mut_DARK-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
Mut_DARK-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
Mut_DARK-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
Mut_DARK-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
Mut_DARK-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
Mut_DARK-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
Mut_DARK-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
Mut_DARK-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
Mut_DARK-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
Mut_DARK-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
Mut_DARK-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
Mut_DARK-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
Mut_DARK-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
Mut_DARK-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
Mut_DARK-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
Mut_DARK-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
Mut_DARK-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data
Mut_DARK-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data
Mut_DARK-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
Mut_DARK-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
Mut_DARK-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
Mut_DARK-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
Mut_DARK-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
Mut_DARK-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
Mut_DARK-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
Mut_DARK-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
Mut_DARK-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
Mut_DARK-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
Mut_DARK-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
Mut_DARK-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
Mut_DARK-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
Mut_DARK-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
Mut_DARK-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
Mut_DARK-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
Mut_DARK-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
Mut_DARK-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
Mut_DARK-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
Mut_DARK-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data
Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data
Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data
Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data
Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data
Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data
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Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data
Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data
Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data
Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data
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Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
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Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data
Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data
Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
Mut_DARK-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
Mut_DARK-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
Mut_DARK-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
Mut_DARK-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
Mut_DARK-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
Mut_DARK-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
Mut_DARK-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
Mut_DARK-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
Mut_DARK-mRNAseq_Preprocess
Mut_DARK-Mutation_Packager_Calls
Mut_DARK-Mutation_Packager_Coverage
Mut_DARK-RPPA_AnnotateWithGene
Mut_BRAF-Add_CustomClinical
Mut_BRAF-Add_CustomEvents
Mut_BRAF-Aggregate_Gene_Status
Mut_BRAF-Aggregate_Molecular_Subtype_Clusters
Mut_BRAF-CoMut1.5
Mut_BRAF-CoMut2.0
Mut_BRAF-CoMutCV
Mut_BRAF-CoMutMerged
Mut_BRAF-CopyNumber_Clustering_CNMF
Mut_BRAF-CopyNumber_Clustering_CNMF_armlevel
Mut_BRAF-CopyNumber_Gistic2
Mut_BRAF-CopyNumber_Gistic2_Postprocess_Focal
Mut_BRAF-Correlate_Clinical_vs_CopyNumber_Arm
Mut_BRAF-Correlate_Clinical_vs_CopyNumber_Focal
Mut_BRAF-Correlate_Clinical_vs_CustomEvents
Mut_BRAF-Correlate_Clinical_vs_Methylation
Mut_BRAF-Correlate_Clinical_vs_miR
Mut_BRAF-Correlate_Clinical_vs_miRseq
Mut_BRAF-Correlate_Clinical_vs_Molecular_Subtypes
Mut_BRAF-Correlate_Clinical_vs_mRNA
Mut_BRAF-Correlate_Clinical_vs_mRNAseq
Mut_BRAF-Correlate_Clinical_vs_Mutation
Mut_BRAF-Correlate_Clinical_vs_RPPA
Mut_BRAF-Correlate_CopyNumber_vs_miR
Mut_BRAF-Correlate_CopyNumber_vs_mRNA
Mut_BRAF-Correlate_CopyNumber_vs_mRNAseq
Mut_BRAF-Correlate_CustomClinical_vs_CopyNumber_Arm
Mut_BRAF-Correlate_CustomClinical_vs_CopyNumber_Focal
Mut_BRAF-Correlate_CustomClinical_vs_CustomEvents
Mut_BRAF-Correlate_CustomClinical_vs_Methylation
Mut_BRAF-Correlate_CustomClinical_vs_miRseq
Mut_BRAF-Correlate_CustomClinical_vs_Molecular_Subtypes
Mut_BRAF-Correlate_CustomClinical_vs_mRNAseq
Mut_BRAF-Correlate_CustomClinical_vs_Mutation
Mut_BRAF-Correlate_CustomClinical_vs_RPPA
Mut_BRAF-Correlate_Methylation_vs_mRNA
Mut_BRAF-Correlate_molecularSubtype_vs_CopyNumber_Arm
Mut_BRAF-Correlate_molecularSubtype_vs_CopyNumber_Focal
Mut_BRAF-Correlate_molecularSubtype_vs_Mutation
Mut_BRAF-expanded_coMutPlot
Mut_BRAF-GenerateStickFigures1.5
Mut_BRAF-GenerateStickFigures2.0
Mut_BRAF-GenerateStickFiguresCV
Mut_BRAF-GenerateStickFiguresMerged
Mut_BRAF-LegoPlotter1.5
Mut_BRAF-LegoPlotter2.0
Mut_BRAF-LegoPlotterCV
Mut_BRAF-LegoPlotterMerged
Mut_BRAF-MergeMutSigRunResults
Mut_BRAF-Methylation_Clustering_CNMF
Mut_BRAF-Methylation_Preprocess
Mut_BRAF-miRseq_Clustering_CNMF
Mut_BRAF-miRseq_Clustering_Consensus
Mut_BRAF-miRseq_Mature_Clustering_CNMF
Mut_BRAF-miRseq_Mature_Clustering_Consensus
Mut_BRAF-miRseq_Mature_Preprocess
Mut_BRAF-miRseq_Preprocess
Mut_BRAF-miR_Clustering_CNMF
Mut_BRAF-miR_Clustering_Consensus
Mut_BRAF-miR_FindDirectTargets
Mut_BRAF-mRNAseq_Clustering_CNMF
Mut_BRAF-mRNAseq_Clustering_Consensus
Mut_BRAF-mRNA_Clustering_CNMF
Mut_BRAF-mRNA_Clustering_Consensus
Mut_BRAF-mRNA_Preprocess_Median
Mut_BRAF-Mutation_Assessor
Mut_BRAF-MutSigNozzleReport1.5
Mut_BRAF-MutSigNozzleReport2.0
Mut_BRAF-MutSigNozzleReportCV
Mut_BRAF-MutSigNozzleReportMerged
Mut_BRAF-MutSigPreprocess1.5
Mut_BRAF-MutSigPreprocess2.0
Mut_BRAF-MutSigRun1.5
Mut_BRAF-MutSigRun2.0
Mut_BRAF-MutSigRunCV
Mut_BRAF-ParadigmPreprocess_mRNA
Mut_BRAF-ParadigmPreprocess_RNASeq
Mut_BRAF-Paradigm_mRNA
Mut_BRAF-Paradigm_mRNA_And_CopyNumber
Mut_BRAF-Paradigm_Prepare_mRNA
Mut_BRAF-Paradigm_Prepare_mRNA_And_Copy_Number
Mut_BRAF-Paradigm_Prepare_RNASeq
Mut_BRAF-Paradigm_Prepare_RNASeq_And_Copy_Number
Mut_BRAF-Paradigm_Preprocess_mRNA
Mut_BRAF-Paradigm_Preprocess_mRNA_And_Copy_Number
Mut_BRAF-Paradigm_Preprocess_RNASeq
Mut_BRAF-Paradigm_Preprocess_RNASeq_And_Copy_Number
Mut_BRAF-Paradigm_Report_Preprocess_mRNA
Mut_BRAF-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
Mut_BRAF-Paradigm_Report_Preprocess_RNASeq
Mut_BRAF-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
Mut_BRAF-Paradigm_RNASeq
Mut_BRAF-Paradigm_RNASeq_And_Copy_Number
Mut_BRAF-Pathway_FindEnrichedGenes
Mut_BRAF-Pathway_Hotnet
Mut_BRAF-Pathway_Paradigm_mRNA
Mut_BRAF-Pathway_Paradigm_mRNA_And_Copy_Number
Mut_BRAF-Pathway_Paradigm_RNASeq
Mut_BRAF-Pathway_Paradigm_RNASeq_And_Copy_Number
Mut_BRAF-ProcessCoverageForMutSig1.5
Mut_BRAF-ProcessCoverageForMutSig2.0
Mut_BRAF-RPPA_Clustering_CNMF
Mut_BRAF-RPPA_Clustering_Consensus
Mut_BRAF-Clinical_Pick_Tier1
Mut_BRAF-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
Mut_BRAF-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
Mut_BRAF-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
Mut_BRAF-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
Mut_BRAF-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
Mut_BRAF-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
Mut_BRAF-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
Mut_BRAF-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
Mut_BRAF-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
Mut_BRAF-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
Mut_BRAF-Merge_Clinical
Mut_BRAF-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
Mut_BRAF-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
Mut_BRAF-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
Mut_BRAF-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
Mut_BRAF-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
Mut_BRAF-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
Mut_BRAF-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
Mut_BRAF-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
Mut_BRAF-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
Mut_BRAF-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
Mut_BRAF-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
Mut_BRAF-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
Mut_BRAF-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
Mut_BRAF-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
Mut_BRAF-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
Mut_BRAF-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
Mut_BRAF-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
Mut_BRAF-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
Mut_BRAF-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
Mut_BRAF-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
Mut_BRAF-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
Mut_BRAF-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
Mut_BRAF-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
Mut_BRAF-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
Mut_BRAF-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
Mut_BRAF-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data
Mut_BRAF-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data
Mut_BRAF-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
Mut_BRAF-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
Mut_BRAF-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
Mut_BRAF-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
Mut_BRAF-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
Mut_BRAF-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
Mut_BRAF-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
Mut_BRAF-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
Mut_BRAF-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
Mut_BRAF-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
Mut_BRAF-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
Mut_BRAF-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
Mut_BRAF-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
Mut_BRAF-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
Mut_BRAF-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
Mut_BRAF-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
Mut_BRAF-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
Mut_BRAF-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
Mut_BRAF-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
Mut_BRAF-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data
Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data
Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data
Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data
Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data
Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data
Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data
Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data
Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data
Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data
Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data
Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data
Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data
Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data
Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data
Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data
Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data
Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
Mut_BRAF-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
Mut_BRAF-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
Mut_BRAF-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
Mut_BRAF-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
Mut_BRAF-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
Mut_BRAF-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
Mut_BRAF-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
Mut_BRAF-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
Mut_BRAF-mRNAseq_Preprocess
Mut_BRAF-Mutation_Packager_Calls
Mut_BRAF-Mutation_Packager_Coverage
Mut_BRAF-RPPA_AnnotateWithGene
HistologicalType_Tall_cell-Add_CustomClinical
HistologicalType_Tall_cell-Add_CustomEvents
HistologicalType_Tall_cell-Aggregate_Gene_Status
HistologicalType_Tall_cell-Aggregate_Molecular_Subtype_Clusters
HistologicalType_Tall_cell-CoMut1.5
HistologicalType_Tall_cell-CoMut2.0
HistologicalType_Tall_cell-CoMutCV
HistologicalType_Tall_cell-CoMutMerged
HistologicalType_Tall_cell-CopyNumber_Clustering_CNMF
HistologicalType_Tall_cell-CopyNumber_Clustering_CNMF_armlevel
HistologicalType_Tall_cell-CopyNumber_Gistic2
HistologicalType_Tall_cell-CopyNumber_Gistic2_Postprocess_Focal
HistologicalType_Tall_cell-Correlate_Clinical_vs_CopyNumber_Arm
HistologicalType_Tall_cell-Correlate_Clinical_vs_CopyNumber_Focal
HistologicalType_Tall_cell-Correlate_Clinical_vs_CustomEvents
HistologicalType_Tall_cell-Correlate_Clinical_vs_Methylation
HistologicalType_Tall_cell-Correlate_Clinical_vs_miR
HistologicalType_Tall_cell-Correlate_Clinical_vs_miRseq
HistologicalType_Tall_cell-Correlate_Clinical_vs_Molecular_Subtypes
HistologicalType_Tall_cell-Correlate_Clinical_vs_mRNA
HistologicalType_Tall_cell-Correlate_Clinical_vs_mRNAseq
HistologicalType_Tall_cell-Correlate_Clinical_vs_Mutation
HistologicalType_Tall_cell-Correlate_Clinical_vs_RPPA
HistologicalType_Tall_cell-Correlate_CopyNumber_vs_miR
HistologicalType_Tall_cell-Correlate_CopyNumber_vs_mRNA
HistologicalType_Tall_cell-Correlate_CopyNumber_vs_mRNAseq
HistologicalType_Tall_cell-Correlate_CustomClinical_vs_CopyNumber_Arm
HistologicalType_Tall_cell-Correlate_CustomClinical_vs_CopyNumber_Focal
HistologicalType_Tall_cell-Correlate_CustomClinical_vs_CustomEvents
HistologicalType_Tall_cell-Correlate_CustomClinical_vs_Methylation
HistologicalType_Tall_cell-Correlate_CustomClinical_vs_miRseq
HistologicalType_Tall_cell-Correlate_CustomClinical_vs_Molecular_Subtypes
HistologicalType_Tall_cell-Correlate_CustomClinical_vs_mRNAseq
HistologicalType_Tall_cell-Correlate_CustomClinical_vs_Mutation
HistologicalType_Tall_cell-Correlate_CustomClinical_vs_RPPA
HistologicalType_Tall_cell-Correlate_Methylation_vs_mRNA
HistologicalType_Tall_cell-Correlate_molecularSubtype_vs_CopyNumber_Arm
HistologicalType_Tall_cell-Correlate_molecularSubtype_vs_CopyNumber_Focal
HistologicalType_Tall_cell-Correlate_molecularSubtype_vs_Mutation
HistologicalType_Tall_cell-expanded_coMutPlot
HistologicalType_Tall_cell-GenerateStickFigures1.5
HistologicalType_Tall_cell-GenerateStickFigures2.0
HistologicalType_Tall_cell-GenerateStickFiguresCV
HistologicalType_Tall_cell-GenerateStickFiguresMerged
HistologicalType_Tall_cell-LegoPlotter1.5
HistologicalType_Tall_cell-LegoPlotter2.0
HistologicalType_Tall_cell-LegoPlotterCV
HistologicalType_Tall_cell-LegoPlotterMerged
HistologicalType_Tall_cell-MergeMutSigRunResults
HistologicalType_Tall_cell-Methylation_Clustering_CNMF
HistologicalType_Tall_cell-Methylation_Preprocess
HistologicalType_Tall_cell-miRseq_Clustering_CNMF
HistologicalType_Tall_cell-miRseq_Clustering_Consensus
HistologicalType_Tall_cell-miRseq_Mature_Clustering_CNMF
HistologicalType_Tall_cell-miRseq_Mature_Clustering_Consensus
HistologicalType_Tall_cell-miRseq_Mature_Preprocess
HistologicalType_Tall_cell-miRseq_Preprocess
HistologicalType_Tall_cell-miR_Clustering_CNMF
HistologicalType_Tall_cell-miR_Clustering_Consensus
HistologicalType_Tall_cell-miR_FindDirectTargets
HistologicalType_Tall_cell-mRNAseq_Clustering_CNMF
HistologicalType_Tall_cell-mRNAseq_Clustering_Consensus
HistologicalType_Tall_cell-mRNA_Clustering_CNMF
HistologicalType_Tall_cell-mRNA_Clustering_Consensus
HistologicalType_Tall_cell-mRNA_Preprocess_Median
HistologicalType_Tall_cell-Mutation_Assessor
HistologicalType_Tall_cell-MutSigNozzleReport1.5
HistologicalType_Tall_cell-MutSigNozzleReport2.0
HistologicalType_Tall_cell-MutSigNozzleReportCV
HistologicalType_Tall_cell-MutSigNozzleReportMerged
HistologicalType_Tall_cell-MutSigPreprocess1.5
HistologicalType_Tall_cell-MutSigPreprocess2.0
HistologicalType_Tall_cell-MutSigRun1.5
HistologicalType_Tall_cell-MutSigRun2.0
HistologicalType_Tall_cell-MutSigRunCV
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HistologicalType_Tall_cell-RPPA_AnnotateWithGene
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HistologicalType_Other-CoMut1.5
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HistologicalType_Other-Correlate_Methylation_vs_mRNA
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HistologicalType_Other-expanded_coMutPlot
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HistologicalType_Classical-ParadigmPreprocess_mRNA
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HistologicalType_Classical-Paradigm_Preprocess_mRNA
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HistologicalType_Classical-Paradigm_RNASeq
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HistologicalType_Classical-Pathway_Paradigm_RNASeq
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HistologicalType_Classical-Merge_Clinical
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HistologicalType_Classical-mRNAseq_Preprocess
HistologicalType_Classical-Mutation_Packager_Calls
HistologicalType_Classical-Mutation_Packager_Coverage
HistologicalType_Classical-RPPA_AnnotateWithGene