| task | THCA
|
| Add_CustomClinical | |
| Add_CustomEvents | |
| Aggregate_Gene_Status | |
| Aggregate_Molecular_Subtype_Clusters | |
| CoMut1.5 | |
| CoMut2.0 | |
| CoMutCV | |
| CoMutMerged | |
| CopyNumber_Clustering_CNMF | |
| CopyNumber_Clustering_CNMF_armlevel | |
| CopyNumber_Gistic2 | |
| CopyNumber_Gistic2_Postprocess_Focal | |
| Correlate_Clinical_vs_CopyNumber_Arm | |
| Correlate_Clinical_vs_CopyNumber_Focal | |
| Correlate_Clinical_vs_CustomEvents | |
| Correlate_Clinical_vs_Methylation | |
| Correlate_Clinical_vs_miR | |
| Correlate_Clinical_vs_miRseq | |
| Correlate_Clinical_vs_Molecular_Subtypes | |
| Correlate_Clinical_vs_mRNA | |
| Correlate_Clinical_vs_mRNAseq | |
| Correlate_Clinical_vs_Mutation | |
| Correlate_Clinical_vs_RPPA | |
| Correlate_CopyNumber_vs_miR | |
| Correlate_CopyNumber_vs_mRNA | |
| Correlate_CopyNumber_vs_mRNAseq | |
| Correlate_CustomClinical_vs_CopyNumber_Arm | |
| Correlate_CustomClinical_vs_CopyNumber_Focal | |
| Correlate_CustomClinical_vs_CustomEvents | |
| Correlate_CustomClinical_vs_Methylation | |
| Correlate_CustomClinical_vs_miRseq | |
| Correlate_CustomClinical_vs_Molecular_Subtypes | |
| Correlate_CustomClinical_vs_mRNAseq | |
| Correlate_CustomClinical_vs_Mutation | |
| Correlate_CustomClinical_vs_RPPA | |
| Correlate_Methylation_vs_mRNA | |
| Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| Correlate_molecularSubtype_vs_Mutation | |
| expanded_coMutPlot | |
| GenerateStickFigures1.5 | |
| GenerateStickFigures2.0 | |
| GenerateStickFiguresCV | |
| GenerateStickFiguresMerged | |
| LegoPlotter1.5 | |
| LegoPlotter2.0 | |
| LegoPlotterCV | |
| LegoPlotterMerged | |
| MergeMutSigRunResults | |
| Methylation_Clustering_CNMF | |
| Methylation_Preprocess | |
| miRseq_Clustering_CNMF | |
| miRseq_Clustering_Consensus | |
| miRseq_Mature_Clustering_CNMF | |
| miRseq_Mature_Clustering_Consensus | |
| miRseq_Mature_Preprocess | |
| miRseq_Preprocess | |
| miR_Clustering_CNMF | |
| miR_Clustering_Consensus | |
| miR_FindDirectTargets | |
| mRNAseq_Clustering_CNMF | |
| mRNAseq_Clustering_Consensus | |
| mRNA_Clustering_CNMF | |
| mRNA_Clustering_Consensus | |
| mRNA_Preprocess_Median | |
| Mutation_Assessor | |
| MutSigNozzleReport1.5 | |
| MutSigNozzleReport2.0 | |
| MutSigNozzleReportCV | |
| MutSigNozzleReportMerged | |
| MutSigPreprocess1.5 | |
| MutSigPreprocess2.0 | |
| MutSigRun1.5 | |
| MutSigRun2.0 | |
| MutSigRunCV | |
| ParadigmPreprocess_mRNA | |
| ParadigmPreprocess_RNASeq | |
| Paradigm_mRNA | |
| Paradigm_mRNA_And_CopyNumber | |
| Paradigm_Prepare_mRNA | |
| Paradigm_Prepare_mRNA_And_Copy_Number | |
| Paradigm_Prepare_RNASeq | |
| Paradigm_Prepare_RNASeq_And_Copy_Number | |
| Paradigm_Preprocess_mRNA | |
| Paradigm_Preprocess_mRNA_And_Copy_Number | |
| Paradigm_Preprocess_RNASeq | |
| Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| Paradigm_Report_Preprocess_mRNA | |
| Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| Paradigm_Report_Preprocess_RNASeq | |
| Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| Paradigm_RNASeq | |
| Paradigm_RNASeq_And_Copy_Number | |
| Pathway_FindEnrichedGenes | |
| Pathway_Hotnet | |
| Pathway_Paradigm_mRNA | |
| Pathway_Paradigm_mRNA_And_Copy_Number | |
| Pathway_Paradigm_RNASeq | |
| Pathway_Paradigm_RNASeq_And_Copy_Number | |
| ProcessCoverageForMutSig1.5 | |
| ProcessCoverageForMutSig2.0 | |
| RPPA_Clustering_CNMF | |
| RPPA_Clustering_Consensus | |
| Clinical_Pick_Tier1 | |
| CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| Merge_Clinical | |
| Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| mRNAseq_Preprocess | |
| Mutation_Packager_Calls | |
| Mutation_Packager_Coverage | |
| RPPA_AnnotateWithGene | |
| TP_NON_HistologicalType_Other-Add_CustomClinical | |
| TP_NON_HistologicalType_Other-Add_CustomEvents | |
| TP_NON_HistologicalType_Other-Aggregate_Gene_Status | |
| TP_NON_HistologicalType_Other-Aggregate_Molecular_Subtype_Clusters | |
| TP_NON_HistologicalType_Other-CoMut1.5 | |
| TP_NON_HistologicalType_Other-CoMut2.0 | |
| TP_NON_HistologicalType_Other-CoMutCV | |
| TP_NON_HistologicalType_Other-CoMutMerged | |
| TP_NON_HistologicalType_Other-CopyNumber_Clustering_CNMF | |
| TP_NON_HistologicalType_Other-CopyNumber_Clustering_CNMF_armlevel | |
| TP_NON_HistologicalType_Other-CopyNumber_Gistic2 | |
| TP_NON_HistologicalType_Other-CopyNumber_Gistic2_Postprocess_Focal | |
| TP_NON_HistologicalType_Other-Correlate_Clinical_vs_CopyNumber_Arm | |
| TP_NON_HistologicalType_Other-Correlate_Clinical_vs_CopyNumber_Focal | |
| TP_NON_HistologicalType_Other-Correlate_Clinical_vs_CustomEvents | |
| TP_NON_HistologicalType_Other-Correlate_Clinical_vs_Methylation | |
| TP_NON_HistologicalType_Other-Correlate_Clinical_vs_miR | |
| TP_NON_HistologicalType_Other-Correlate_Clinical_vs_miRseq | |
| TP_NON_HistologicalType_Other-Correlate_Clinical_vs_Molecular_Subtypes | |
| TP_NON_HistologicalType_Other-Correlate_Clinical_vs_mRNA | |
| TP_NON_HistologicalType_Other-Correlate_Clinical_vs_mRNAseq | |
| TP_NON_HistologicalType_Other-Correlate_Clinical_vs_Mutation | |
| TP_NON_HistologicalType_Other-Correlate_Clinical_vs_RPPA | |
| TP_NON_HistologicalType_Other-Correlate_CopyNumber_vs_miR | |
| TP_NON_HistologicalType_Other-Correlate_CopyNumber_vs_mRNA | |
| TP_NON_HistologicalType_Other-Correlate_CopyNumber_vs_mRNAseq | |
| TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_CustomEvents | |
| TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_Methylation | |
| TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_miRseq | |
| TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_mRNAseq | |
| TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_Mutation | |
| TP_NON_HistologicalType_Other-Correlate_CustomClinical_vs_RPPA | |
| TP_NON_HistologicalType_Other-Correlate_Methylation_vs_mRNA | |
| TP_NON_HistologicalType_Other-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| TP_NON_HistologicalType_Other-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| TP_NON_HistologicalType_Other-Correlate_molecularSubtype_vs_Mutation | |
| TP_NON_HistologicalType_Other-expanded_coMutPlot | |
| TP_NON_HistologicalType_Other-GenerateStickFigures1.5 | |
| TP_NON_HistologicalType_Other-GenerateStickFigures2.0 | |
| TP_NON_HistologicalType_Other-GenerateStickFiguresCV | |
| TP_NON_HistologicalType_Other-GenerateStickFiguresMerged | |
| TP_NON_HistologicalType_Other-LegoPlotter1.5 | |
| TP_NON_HistologicalType_Other-LegoPlotter2.0 | |
| TP_NON_HistologicalType_Other-LegoPlotterCV | |
| TP_NON_HistologicalType_Other-LegoPlotterMerged | |
| TP_NON_HistologicalType_Other-MergeMutSigRunResults | |
| TP_NON_HistologicalType_Other-Methylation_Clustering_CNMF | |
| TP_NON_HistologicalType_Other-Methylation_Preprocess | |
| TP_NON_HistologicalType_Other-miRseq_Clustering_CNMF | |
| TP_NON_HistologicalType_Other-miRseq_Clustering_Consensus | |
| TP_NON_HistologicalType_Other-miRseq_Mature_Clustering_CNMF | |
| TP_NON_HistologicalType_Other-miRseq_Mature_Clustering_Consensus | |
| TP_NON_HistologicalType_Other-miRseq_Mature_Preprocess | |
| TP_NON_HistologicalType_Other-miRseq_Preprocess | |
| TP_NON_HistologicalType_Other-miR_Clustering_CNMF | |
| TP_NON_HistologicalType_Other-miR_Clustering_Consensus | |
| TP_NON_HistologicalType_Other-miR_FindDirectTargets | |
| TP_NON_HistologicalType_Other-mRNAseq_Clustering_CNMF | |
| TP_NON_HistologicalType_Other-mRNAseq_Clustering_Consensus | |
| TP_NON_HistologicalType_Other-mRNA_Clustering_CNMF | |
| TP_NON_HistologicalType_Other-mRNA_Clustering_Consensus | |
| TP_NON_HistologicalType_Other-mRNA_Preprocess_Median | |
| TP_NON_HistologicalType_Other-Mutation_Assessor | |
| TP_NON_HistologicalType_Other-MutSigNozzleReport1.5 | |
| TP_NON_HistologicalType_Other-MutSigNozzleReport2.0 | |
| TP_NON_HistologicalType_Other-MutSigNozzleReportCV | |
| TP_NON_HistologicalType_Other-MutSigNozzleReportMerged | |
| TP_NON_HistologicalType_Other-MutSigPreprocess1.5 | |
| TP_NON_HistologicalType_Other-MutSigPreprocess2.0 | |
| TP_NON_HistologicalType_Other-MutSigRun1.5 | |
| TP_NON_HistologicalType_Other-MutSigRun2.0 | |
| TP_NON_HistologicalType_Other-MutSigRunCV | |
| TP_NON_HistologicalType_Other-ParadigmPreprocess_mRNA | |
| TP_NON_HistologicalType_Other-ParadigmPreprocess_RNASeq | |
| TP_NON_HistologicalType_Other-Paradigm_mRNA | |
| TP_NON_HistologicalType_Other-Paradigm_mRNA_And_CopyNumber | |
| TP_NON_HistologicalType_Other-Paradigm_Prepare_mRNA | |
| TP_NON_HistologicalType_Other-Paradigm_Prepare_mRNA_And_Copy_Number | |
| TP_NON_HistologicalType_Other-Paradigm_Prepare_RNASeq | |
| TP_NON_HistologicalType_Other-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| TP_NON_HistologicalType_Other-Paradigm_Preprocess_mRNA | |
| TP_NON_HistologicalType_Other-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| TP_NON_HistologicalType_Other-Paradigm_Preprocess_RNASeq | |
| TP_NON_HistologicalType_Other-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| TP_NON_HistologicalType_Other-Paradigm_Report_Preprocess_mRNA | |
| TP_NON_HistologicalType_Other-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| TP_NON_HistologicalType_Other-Paradigm_Report_Preprocess_RNASeq | |
| TP_NON_HistologicalType_Other-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| TP_NON_HistologicalType_Other-Paradigm_RNASeq | |
| TP_NON_HistologicalType_Other-Paradigm_RNASeq_And_Copy_Number | |
| TP_NON_HistologicalType_Other-Pathway_FindEnrichedGenes | |
| TP_NON_HistologicalType_Other-Pathway_Hotnet | |
| TP_NON_HistologicalType_Other-Pathway_Paradigm_mRNA | |
| TP_NON_HistologicalType_Other-Pathway_Paradigm_mRNA_And_Copy_Number | |
| TP_NON_HistologicalType_Other-Pathway_Paradigm_RNASeq | |
| TP_NON_HistologicalType_Other-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| TP_NON_HistologicalType_Other-ProcessCoverageForMutSig1.5 | |
| TP_NON_HistologicalType_Other-ProcessCoverageForMutSig2.0 | |
| TP_NON_HistologicalType_Other-RPPA_Clustering_CNMF | |
| TP_NON_HistologicalType_Other-RPPA_Clustering_Consensus | |
| TP_NON_HistologicalType_Other-Clinical_Pick_Tier1 | |
| TP_NON_HistologicalType_Other-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| TP_NON_HistologicalType_Other-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| TP_NON_HistologicalType_Other-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| TP_NON_HistologicalType_Other-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| TP_NON_HistologicalType_Other-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| TP_NON_HistologicalType_Other-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| TP_NON_HistologicalType_Other-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| TP_NON_HistologicalType_Other-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| TP_NON_HistologicalType_Other-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| TP_NON_HistologicalType_Other-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| TP_NON_HistologicalType_Other-Merge_Clinical | |
| TP_NON_HistologicalType_Other-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| TP_NON_HistologicalType_Other-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| TP_NON_HistologicalType_Other-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| TP_NON_HistologicalType_Other-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| TP_NON_HistologicalType_Other-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| TP_NON_HistologicalType_Other-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| TP_NON_HistologicalType_Other-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| TP_NON_HistologicalType_Other-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| TP_NON_HistologicalType_Other-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| TP_NON_HistologicalType_Other-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| TP_NON_HistologicalType_Other-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| TP_NON_HistologicalType_Other-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| TP_NON_HistologicalType_Other-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| TP_NON_HistologicalType_Other-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| TP_NON_HistologicalType_Other-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| TP_NON_HistologicalType_Other-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| TP_NON_HistologicalType_Other-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| TP_NON_HistologicalType_Other-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| TP_NON_HistologicalType_Other-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| TP_NON_HistologicalType_Other-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| TP_NON_HistologicalType_Other-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| TP_NON_HistologicalType_Other-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| TP_NON_HistologicalType_Other-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| TP_NON_HistologicalType_Other-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| TP_NON_HistologicalType_Other-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| TP_NON_HistologicalType_Other-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| TP_NON_HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| TP_NON_HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| TP_NON_HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| TP_NON_HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| TP_NON_HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| TP_NON_HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| TP_NON_HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| TP_NON_HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| TP_NON_HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| TP_NON_HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| TP_NON_HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| TP_NON_HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| TP_NON_HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| TP_NON_HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| TP_NON_HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| TP_NON_HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| TP_NON_HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| TP_NON_HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| TP_NON_HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| TP_NON_HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| TP_NON_HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| TP_NON_HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| TP_NON_HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| TP_NON_HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| TP_NON_HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| TP_NON_HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| TP_NON_HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| TP_NON_HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| TP_NON_HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| TP_NON_HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| TP_NON_HistologicalType_Other-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| TP_NON_HistologicalType_Other-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| TP_NON_HistologicalType_Other-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| TP_NON_HistologicalType_Other-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| TP_NON_HistologicalType_Other-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| TP_NON_HistologicalType_Other-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| TP_NON_HistologicalType_Other-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| TP_NON_HistologicalType_Other-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| TP_NON_HistologicalType_Other-mRNAseq_Preprocess | |
| TP_NON_HistologicalType_Other-Mutation_Packager_Calls | |
| TP_NON_HistologicalType_Other-Mutation_Packager_Coverage | |
| TP_NON_HistologicalType_Other-RPPA_AnnotateWithGene | |
| TP-Add_CustomClinical | |
| TP-Add_CustomEvents | |
| TP-Aggregate_Gene_Status | |
| TP-Aggregate_Molecular_Subtype_Clusters | |
| TP-CoMut1.5 | |
| TP-CoMut2.0 | |
| TP-CoMutCV | |
| TP-CoMutMerged | |
| TP-CopyNumber_Clustering_CNMF | |
| TP-CopyNumber_Clustering_CNMF_armlevel | |
| TP-CopyNumber_Gistic2 | |
| TP-CopyNumber_Gistic2_Postprocess_Focal | |
| TP-Correlate_Clinical_vs_CopyNumber_Arm | |
| TP-Correlate_Clinical_vs_CopyNumber_Focal | |
| TP-Correlate_Clinical_vs_CustomEvents | |
| TP-Correlate_Clinical_vs_Methylation | |
| TP-Correlate_Clinical_vs_miR | |
| TP-Correlate_Clinical_vs_miRseq | |
| TP-Correlate_Clinical_vs_Molecular_Subtypes | |
| TP-Correlate_Clinical_vs_mRNA | |
| TP-Correlate_Clinical_vs_mRNAseq | |
| TP-Correlate_Clinical_vs_Mutation | |
| TP-Correlate_Clinical_vs_RPPA | |
| TP-Correlate_CopyNumber_vs_miR | |
| TP-Correlate_CopyNumber_vs_mRNA | |
| TP-Correlate_CopyNumber_vs_mRNAseq | |
| TP-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| TP-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| TP-Correlate_CustomClinical_vs_CustomEvents | |
| TP-Correlate_CustomClinical_vs_Methylation | |
| TP-Correlate_CustomClinical_vs_miRseq | |
| TP-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| TP-Correlate_CustomClinical_vs_mRNAseq | |
| TP-Correlate_CustomClinical_vs_Mutation | |
| TP-Correlate_CustomClinical_vs_RPPA | |
| TP-Correlate_Methylation_vs_mRNA | |
| TP-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| TP-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| TP-Correlate_molecularSubtype_vs_Mutation | |
| TP-expanded_coMutPlot | |
| TP-GenerateStickFigures1.5 | |
| TP-GenerateStickFigures2.0 | |
| TP-GenerateStickFiguresCV | |
| TP-GenerateStickFiguresMerged | |
| TP-LegoPlotter1.5 | |
| TP-LegoPlotter2.0 | |
| TP-LegoPlotterCV | |
| TP-LegoPlotterMerged | |
| TP-MergeMutSigRunResults | |
| TP-Methylation_Clustering_CNMF | |
| TP-Methylation_Preprocess | |
| TP-miRseq_Clustering_CNMF | |
| TP-miRseq_Clustering_Consensus | |
| TP-miRseq_Mature_Clustering_CNMF | |
| TP-miRseq_Mature_Clustering_Consensus | |
| TP-miRseq_Mature_Preprocess | |
| TP-miRseq_Preprocess | |
| TP-miR_Clustering_CNMF | |
| TP-miR_Clustering_Consensus | |
| TP-miR_FindDirectTargets | |
| TP-mRNAseq_Clustering_CNMF | |
| TP-mRNAseq_Clustering_Consensus | |
| TP-mRNA_Clustering_CNMF | |
| TP-mRNA_Clustering_Consensus | |
| TP-mRNA_Preprocess_Median | |
| TP-Mutation_Assessor | |
| TP-MutSigNozzleReport1.5 | |
| TP-MutSigNozzleReport2.0 | |
| TP-MutSigNozzleReportCV | |
| TP-MutSigNozzleReportMerged | |
| TP-MutSigPreprocess1.5 | |
| TP-MutSigPreprocess2.0 | |
| TP-MutSigRun1.5 | |
| TP-MutSigRun2.0 | |
| TP-MutSigRunCV | |
| TP-ParadigmPreprocess_mRNA | |
| TP-ParadigmPreprocess_RNASeq | |
| TP-Paradigm_mRNA | |
| TP-Paradigm_mRNA_And_CopyNumber | |
| TP-Paradigm_Prepare_mRNA | |
| TP-Paradigm_Prepare_mRNA_And_Copy_Number | |
| TP-Paradigm_Prepare_RNASeq | |
| TP-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| TP-Paradigm_Preprocess_mRNA | |
| TP-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| TP-Paradigm_Preprocess_RNASeq | |
| TP-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| TP-Paradigm_Report_Preprocess_mRNA | |
| TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| TP-Paradigm_Report_Preprocess_RNASeq | |
| TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| TP-Paradigm_RNASeq | |
| TP-Paradigm_RNASeq_And_Copy_Number | |
| TP-Pathway_FindEnrichedGenes | |
| TP-Pathway_Hotnet | |
| TP-Pathway_Paradigm_mRNA | |
| TP-Pathway_Paradigm_mRNA_And_Copy_Number | |
| TP-Pathway_Paradigm_RNASeq | |
| TP-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| TP-ProcessCoverageForMutSig1.5 | |
| TP-ProcessCoverageForMutSig2.0 | |
| TP-RPPA_Clustering_CNMF | |
| TP-RPPA_Clustering_Consensus | |
| TP-Clinical_Pick_Tier1 | |
| TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| TP-Merge_Clinical | |
| TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| TP-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| TP-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| TP-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| TP-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| TP-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| TP-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| TP-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| TP-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| TP-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| TP-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| TP-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| TP-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| TP-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| TP-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| TP-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| TP-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| TP-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| TP-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| TP-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| TP-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| TP-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| TP-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| TP-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| TP-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| TP-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| TP-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| TP-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| TP-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| TP-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| TP-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| TP-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| TP-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| TP-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| TP-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| TP-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| TP-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| TP-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| TP-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| TP-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| TP-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| TP-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| TP-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| TP-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| TP-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| TP-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| TP-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| TP-mRNAseq_Preprocess | |
| TP-Mutation_Packager_Calls | |
| TP-Mutation_Packager_Coverage | |
| TP-RPPA_AnnotateWithGene | |
| TM-Add_CustomClinical | |
| TM-Add_CustomEvents | |
| TM-Aggregate_Gene_Status | |
| TM-Aggregate_Molecular_Subtype_Clusters | |
| TM-CoMut1.5 | |
| TM-CoMut2.0 | |
| TM-CoMutCV | |
| TM-CoMutMerged | |
| TM-CopyNumber_Clustering_CNMF | |
| TM-CopyNumber_Clustering_CNMF_armlevel | |
| TM-CopyNumber_Gistic2 | |
| TM-CopyNumber_Gistic2_Postprocess_Focal | |
| TM-Correlate_Clinical_vs_CopyNumber_Arm | |
| TM-Correlate_Clinical_vs_CopyNumber_Focal | |
| TM-Correlate_Clinical_vs_CustomEvents | |
| TM-Correlate_Clinical_vs_Methylation | |
| TM-Correlate_Clinical_vs_miR | |
| TM-Correlate_Clinical_vs_miRseq | |
| TM-Correlate_Clinical_vs_Molecular_Subtypes | |
| TM-Correlate_Clinical_vs_mRNA | |
| TM-Correlate_Clinical_vs_mRNAseq | |
| TM-Correlate_Clinical_vs_Mutation | |
| TM-Correlate_Clinical_vs_RPPA | |
| TM-Correlate_CopyNumber_vs_miR | |
| TM-Correlate_CopyNumber_vs_mRNA | |
| TM-Correlate_CopyNumber_vs_mRNAseq | |
| TM-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| TM-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| TM-Correlate_CustomClinical_vs_CustomEvents | |
| TM-Correlate_CustomClinical_vs_Methylation | |
| TM-Correlate_CustomClinical_vs_miRseq | |
| TM-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| TM-Correlate_CustomClinical_vs_mRNAseq | |
| TM-Correlate_CustomClinical_vs_Mutation | |
| TM-Correlate_CustomClinical_vs_RPPA | |
| TM-Correlate_Methylation_vs_mRNA | |
| TM-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| TM-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| TM-Correlate_molecularSubtype_vs_Mutation | |
| TM-expanded_coMutPlot | |
| TM-GenerateStickFigures1.5 | |
| TM-GenerateStickFigures2.0 | |
| TM-GenerateStickFiguresCV | |
| TM-GenerateStickFiguresMerged | |
| TM-LegoPlotter1.5 | |
| TM-LegoPlotter2.0 | |
| TM-LegoPlotterCV | |
| TM-LegoPlotterMerged | |
| TM-MergeMutSigRunResults | |
| TM-Methylation_Clustering_CNMF | |
| TM-Methylation_Preprocess | |
| TM-miRseq_Clustering_CNMF | |
| TM-miRseq_Clustering_Consensus | |
| TM-miRseq_Mature_Clustering_CNMF | |
| TM-miRseq_Mature_Clustering_Consensus | |
| TM-miRseq_Mature_Preprocess | |
| TM-miRseq_Preprocess | |
| TM-miR_Clustering_CNMF | |
| TM-miR_Clustering_Consensus | |
| TM-miR_FindDirectTargets | |
| TM-mRNAseq_Clustering_CNMF | |
| TM-mRNAseq_Clustering_Consensus | |
| TM-mRNA_Clustering_CNMF | |
| TM-mRNA_Clustering_Consensus | |
| TM-mRNA_Preprocess_Median | |
| TM-Mutation_Assessor | |
| TM-MutSigNozzleReport1.5 | |
| TM-MutSigNozzleReport2.0 | |
| TM-MutSigNozzleReportCV | |
| TM-MutSigNozzleReportMerged | |
| TM-MutSigPreprocess1.5 | |
| TM-MutSigPreprocess2.0 | |
| TM-MutSigRun1.5 | |
| TM-MutSigRun2.0 | |
| TM-MutSigRunCV | |
| TM-ParadigmPreprocess_mRNA | |
| TM-ParadigmPreprocess_RNASeq | |
| TM-Paradigm_mRNA | |
| TM-Paradigm_mRNA_And_CopyNumber | |
| TM-Paradigm_Prepare_mRNA | |
| TM-Paradigm_Prepare_mRNA_And_Copy_Number | |
| TM-Paradigm_Prepare_RNASeq | |
| TM-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| TM-Paradigm_Preprocess_mRNA | |
| TM-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| TM-Paradigm_Preprocess_RNASeq | |
| TM-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| TM-Paradigm_Report_Preprocess_mRNA | |
| TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| TM-Paradigm_Report_Preprocess_RNASeq | |
| TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| TM-Paradigm_RNASeq | |
| TM-Paradigm_RNASeq_And_Copy_Number | |
| TM-Pathway_FindEnrichedGenes | |
| TM-Pathway_Hotnet | |
| TM-Pathway_Paradigm_mRNA | |
| TM-Pathway_Paradigm_mRNA_And_Copy_Number | |
| TM-Pathway_Paradigm_RNASeq | |
| TM-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| TM-ProcessCoverageForMutSig1.5 | |
| TM-ProcessCoverageForMutSig2.0 | |
| TM-RPPA_Clustering_CNMF | |
| TM-RPPA_Clustering_Consensus | |
| TM-Clinical_Pick_Tier1 | |
| TM-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| TM-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| TM-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| TM-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| TM-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| TM-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| TM-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| TM-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| TM-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| TM-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| TM-Merge_Clinical | |
| TM-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| TM-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| TM-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| TM-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| TM-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| TM-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| TM-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| TM-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| TM-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| TM-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| TM-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| TM-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| TM-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| TM-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| TM-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| TM-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| TM-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| TM-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| TM-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| TM-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| TM-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| TM-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| TM-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| TM-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| TM-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| TM-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| TM-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| TM-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| TM-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| TM-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| TM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| TM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| TM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| TM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| TM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| TM-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| TM-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| TM-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| TM-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| TM-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| TM-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| TM-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| TM-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| TM-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| TM-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| TM-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| TM-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| TM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| TM-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| TM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| TM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| TM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| TM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| TM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| TM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| TM-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| TM-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| TM-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| TM-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| TM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| TM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| TM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| TM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| TM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| TM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| TM-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| TM-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| TM-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| TM-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| TM-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| TM-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| TM-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| TM-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| TM-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| TM-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| TM-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| TM-mRNAseq_Preprocess | |
| TM-Mutation_Packager_Calls | |
| TM-Mutation_Packager_Coverage | |
| TM-RPPA_AnnotateWithGene | |
| RiskCategory_Low-Add_CustomClinical | |
| RiskCategory_Low-Add_CustomEvents | |
| RiskCategory_Low-Aggregate_Gene_Status | |
| RiskCategory_Low-Aggregate_Molecular_Subtype_Clusters | |
| RiskCategory_Low-CoMut1.5 | |
| RiskCategory_Low-CoMut2.0 | |
| RiskCategory_Low-CoMutCV | |
| RiskCategory_Low-CoMutMerged | |
| RiskCategory_Low-CopyNumber_Clustering_CNMF | |
| RiskCategory_Low-CopyNumber_Clustering_CNMF_armlevel | |
| RiskCategory_Low-CopyNumber_Gistic2 | |
| RiskCategory_Low-CopyNumber_Gistic2_Postprocess_Focal | |
| RiskCategory_Low-Correlate_Clinical_vs_CopyNumber_Arm | |
| RiskCategory_Low-Correlate_Clinical_vs_CopyNumber_Focal | |
| RiskCategory_Low-Correlate_Clinical_vs_CustomEvents | |
| RiskCategory_Low-Correlate_Clinical_vs_Methylation | |
| RiskCategory_Low-Correlate_Clinical_vs_miR | |
| RiskCategory_Low-Correlate_Clinical_vs_miRseq | |
| RiskCategory_Low-Correlate_Clinical_vs_Molecular_Subtypes | |
| RiskCategory_Low-Correlate_Clinical_vs_mRNA | |
| RiskCategory_Low-Correlate_Clinical_vs_mRNAseq | |
| RiskCategory_Low-Correlate_Clinical_vs_Mutation | |
| RiskCategory_Low-Correlate_Clinical_vs_RPPA | |
| RiskCategory_Low-Correlate_CopyNumber_vs_miR | |
| RiskCategory_Low-Correlate_CopyNumber_vs_mRNA | |
| RiskCategory_Low-Correlate_CopyNumber_vs_mRNAseq | |
| RiskCategory_Low-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| RiskCategory_Low-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| RiskCategory_Low-Correlate_CustomClinical_vs_CustomEvents | |
| RiskCategory_Low-Correlate_CustomClinical_vs_Methylation | |
| RiskCategory_Low-Correlate_CustomClinical_vs_miRseq | |
| RiskCategory_Low-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| RiskCategory_Low-Correlate_CustomClinical_vs_mRNAseq | |
| RiskCategory_Low-Correlate_CustomClinical_vs_Mutation | |
| RiskCategory_Low-Correlate_CustomClinical_vs_RPPA | |
| RiskCategory_Low-Correlate_Methylation_vs_mRNA | |
| RiskCategory_Low-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| RiskCategory_Low-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| RiskCategory_Low-Correlate_molecularSubtype_vs_Mutation | |
| RiskCategory_Low-expanded_coMutPlot | |
| RiskCategory_Low-GenerateStickFigures1.5 | |
| RiskCategory_Low-GenerateStickFigures2.0 | |
| RiskCategory_Low-GenerateStickFiguresCV | |
| RiskCategory_Low-GenerateStickFiguresMerged | |
| RiskCategory_Low-LegoPlotter1.5 | |
| RiskCategory_Low-LegoPlotter2.0 | |
| RiskCategory_Low-LegoPlotterCV | |
| RiskCategory_Low-LegoPlotterMerged | |
| RiskCategory_Low-MergeMutSigRunResults | |
| RiskCategory_Low-Methylation_Clustering_CNMF | |
| RiskCategory_Low-Methylation_Preprocess | |
| RiskCategory_Low-miRseq_Clustering_CNMF | |
| RiskCategory_Low-miRseq_Clustering_Consensus | |
| RiskCategory_Low-miRseq_Mature_Clustering_CNMF | |
| RiskCategory_Low-miRseq_Mature_Clustering_Consensus | |
| RiskCategory_Low-miRseq_Mature_Preprocess | |
| RiskCategory_Low-miRseq_Preprocess | |
| RiskCategory_Low-miR_Clustering_CNMF | |
| RiskCategory_Low-miR_Clustering_Consensus | |
| RiskCategory_Low-miR_FindDirectTargets | |
| RiskCategory_Low-mRNAseq_Clustering_CNMF | |
| RiskCategory_Low-mRNAseq_Clustering_Consensus | |
| RiskCategory_Low-mRNA_Clustering_CNMF | |
| RiskCategory_Low-mRNA_Clustering_Consensus | |
| RiskCategory_Low-mRNA_Preprocess_Median | |
| RiskCategory_Low-Mutation_Assessor | |
| RiskCategory_Low-MutSigNozzleReport1.5 | |
| RiskCategory_Low-MutSigNozzleReport2.0 | |
| RiskCategory_Low-MutSigNozzleReportCV | |
| RiskCategory_Low-MutSigNozzleReportMerged | |
| RiskCategory_Low-MutSigPreprocess1.5 | |
| RiskCategory_Low-MutSigPreprocess2.0 | |
| RiskCategory_Low-MutSigRun1.5 | |
| RiskCategory_Low-MutSigRun2.0 | |
| RiskCategory_Low-MutSigRunCV | |
| RiskCategory_Low-ParadigmPreprocess_mRNA | |
| RiskCategory_Low-ParadigmPreprocess_RNASeq | |
| RiskCategory_Low-Paradigm_mRNA | |
| RiskCategory_Low-Paradigm_mRNA_And_CopyNumber | |
| RiskCategory_Low-Paradigm_Prepare_mRNA | |
| RiskCategory_Low-Paradigm_Prepare_mRNA_And_Copy_Number | |
| RiskCategory_Low-Paradigm_Prepare_RNASeq | |
| RiskCategory_Low-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| RiskCategory_Low-Paradigm_Preprocess_mRNA | |
| RiskCategory_Low-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| RiskCategory_Low-Paradigm_Preprocess_RNASeq | |
| RiskCategory_Low-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| RiskCategory_Low-Paradigm_Report_Preprocess_mRNA | |
| RiskCategory_Low-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| RiskCategory_Low-Paradigm_Report_Preprocess_RNASeq | |
| RiskCategory_Low-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| RiskCategory_Low-Paradigm_RNASeq | |
| RiskCategory_Low-Paradigm_RNASeq_And_Copy_Number | |
| RiskCategory_Low-Pathway_FindEnrichedGenes | |
| RiskCategory_Low-Pathway_Hotnet | |
| RiskCategory_Low-Pathway_Paradigm_mRNA | |
| RiskCategory_Low-Pathway_Paradigm_mRNA_And_Copy_Number | |
| RiskCategory_Low-Pathway_Paradigm_RNASeq | |
| RiskCategory_Low-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| RiskCategory_Low-ProcessCoverageForMutSig1.5 | |
| RiskCategory_Low-ProcessCoverageForMutSig2.0 | |
| RiskCategory_Low-RPPA_Clustering_CNMF | |
| RiskCategory_Low-RPPA_Clustering_Consensus | |
| RiskCategory_Low-Clinical_Pick_Tier1 | |
| RiskCategory_Low-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| RiskCategory_Low-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| RiskCategory_Low-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| RiskCategory_Low-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| RiskCategory_Low-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| RiskCategory_Low-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| RiskCategory_Low-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| RiskCategory_Low-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| RiskCategory_Low-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| RiskCategory_Low-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| RiskCategory_Low-Merge_Clinical | |
| RiskCategory_Low-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| RiskCategory_Low-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| RiskCategory_Low-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| RiskCategory_Low-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| RiskCategory_Low-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| RiskCategory_Low-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| RiskCategory_Low-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| RiskCategory_Low-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| RiskCategory_Low-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| RiskCategory_Low-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| RiskCategory_Low-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| RiskCategory_Low-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| RiskCategory_Low-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| RiskCategory_Low-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| RiskCategory_Low-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| RiskCategory_Low-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| RiskCategory_Low-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| RiskCategory_Low-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| RiskCategory_Low-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| RiskCategory_Low-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| RiskCategory_Low-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| RiskCategory_Low-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| RiskCategory_Low-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| RiskCategory_Low-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| RiskCategory_Low-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| RiskCategory_Low-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| RiskCategory_Low-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| RiskCategory_Low-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| RiskCategory_Low-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| RiskCategory_Low-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| RiskCategory_Low-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| RiskCategory_Low-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| RiskCategory_Low-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| RiskCategory_Low-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| RiskCategory_Low-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| RiskCategory_Low-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| RiskCategory_Low-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| RiskCategory_Low-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| RiskCategory_Low-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| RiskCategory_Low-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| RiskCategory_Low-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| RiskCategory_Low-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| RiskCategory_Low-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| RiskCategory_Low-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| RiskCategory_Low-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| RiskCategory_Low-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| RiskCategory_Low-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| RiskCategory_Low-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| RiskCategory_Low-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| RiskCategory_Low-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| RiskCategory_Low-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| RiskCategory_Low-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| RiskCategory_Low-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| RiskCategory_Low-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| RiskCategory_Low-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| RiskCategory_Low-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| RiskCategory_Low-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| RiskCategory_Low-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| RiskCategory_Low-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| RiskCategory_Low-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| RiskCategory_Low-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| RiskCategory_Low-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| RiskCategory_Low-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| RiskCategory_Low-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| RiskCategory_Low-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| RiskCategory_Low-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| RiskCategory_Low-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| RiskCategory_Low-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| RiskCategory_Low-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| RiskCategory_Low-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| RiskCategory_Low-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| RiskCategory_Low-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| RiskCategory_Low-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| RiskCategory_Low-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| RiskCategory_Low-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| RiskCategory_Low-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| RiskCategory_Low-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| RiskCategory_Low-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| RiskCategory_Low-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| RiskCategory_Low-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| RiskCategory_Low-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| RiskCategory_Low-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| RiskCategory_Low-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| RiskCategory_Low-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| RiskCategory_Low-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| RiskCategory_Low-mRNAseq_Preprocess | |
| RiskCategory_Low-Mutation_Packager_Calls | |
| RiskCategory_Low-Mutation_Packager_Coverage | |
| RiskCategory_Low-RPPA_AnnotateWithGene | |
| RiskCategory_Intermediate-Add_CustomClinical | |
| RiskCategory_Intermediate-Add_CustomEvents | |
| RiskCategory_Intermediate-Aggregate_Gene_Status | |
| RiskCategory_Intermediate-Aggregate_Molecular_Subtype_Clusters | |
| RiskCategory_Intermediate-CoMut1.5 | |
| RiskCategory_Intermediate-CoMut2.0 | |
| RiskCategory_Intermediate-CoMutCV | |
| RiskCategory_Intermediate-CoMutMerged | |
| RiskCategory_Intermediate-CopyNumber_Clustering_CNMF | |
| RiskCategory_Intermediate-CopyNumber_Clustering_CNMF_armlevel | |
| RiskCategory_Intermediate-CopyNumber_Gistic2 | |
| RiskCategory_Intermediate-CopyNumber_Gistic2_Postprocess_Focal | |
| RiskCategory_Intermediate-Correlate_Clinical_vs_CopyNumber_Arm | |
| RiskCategory_Intermediate-Correlate_Clinical_vs_CopyNumber_Focal | |
| RiskCategory_Intermediate-Correlate_Clinical_vs_CustomEvents | |
| RiskCategory_Intermediate-Correlate_Clinical_vs_Methylation | |
| RiskCategory_Intermediate-Correlate_Clinical_vs_miR | |
| RiskCategory_Intermediate-Correlate_Clinical_vs_miRseq | |
| RiskCategory_Intermediate-Correlate_Clinical_vs_Molecular_Subtypes | |
| RiskCategory_Intermediate-Correlate_Clinical_vs_mRNA | |
| RiskCategory_Intermediate-Correlate_Clinical_vs_mRNAseq | |
| RiskCategory_Intermediate-Correlate_Clinical_vs_Mutation | |
| RiskCategory_Intermediate-Correlate_Clinical_vs_RPPA | |
| RiskCategory_Intermediate-Correlate_CopyNumber_vs_miR | |
| RiskCategory_Intermediate-Correlate_CopyNumber_vs_mRNA | |
| RiskCategory_Intermediate-Correlate_CopyNumber_vs_mRNAseq | |
| RiskCategory_Intermediate-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| RiskCategory_Intermediate-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| RiskCategory_Intermediate-Correlate_CustomClinical_vs_CustomEvents | |
| RiskCategory_Intermediate-Correlate_CustomClinical_vs_Methylation | |
| RiskCategory_Intermediate-Correlate_CustomClinical_vs_miRseq | |
| RiskCategory_Intermediate-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| RiskCategory_Intermediate-Correlate_CustomClinical_vs_mRNAseq | |
| RiskCategory_Intermediate-Correlate_CustomClinical_vs_Mutation | |
| RiskCategory_Intermediate-Correlate_CustomClinical_vs_RPPA | |
| RiskCategory_Intermediate-Correlate_Methylation_vs_mRNA | |
| RiskCategory_Intermediate-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| RiskCategory_Intermediate-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| RiskCategory_Intermediate-Correlate_molecularSubtype_vs_Mutation | |
| RiskCategory_Intermediate-expanded_coMutPlot | |
| RiskCategory_Intermediate-GenerateStickFigures1.5 | |
| RiskCategory_Intermediate-GenerateStickFigures2.0 | |
| RiskCategory_Intermediate-GenerateStickFiguresCV | |
| RiskCategory_Intermediate-GenerateStickFiguresMerged | |
| RiskCategory_Intermediate-LegoPlotter1.5 | |
| RiskCategory_Intermediate-LegoPlotter2.0 | |
| RiskCategory_Intermediate-LegoPlotterCV | |
| RiskCategory_Intermediate-LegoPlotterMerged | |
| RiskCategory_Intermediate-MergeMutSigRunResults | |
| RiskCategory_Intermediate-Methylation_Clustering_CNMF | |
| RiskCategory_Intermediate-Methylation_Preprocess | |
| RiskCategory_Intermediate-miRseq_Clustering_CNMF | |
| RiskCategory_Intermediate-miRseq_Clustering_Consensus | |
| RiskCategory_Intermediate-miRseq_Mature_Clustering_CNMF | |
| RiskCategory_Intermediate-miRseq_Mature_Clustering_Consensus | |
| RiskCategory_Intermediate-miRseq_Mature_Preprocess | |
| RiskCategory_Intermediate-miRseq_Preprocess | |
| RiskCategory_Intermediate-miR_Clustering_CNMF | |
| RiskCategory_Intermediate-miR_Clustering_Consensus | |
| RiskCategory_Intermediate-miR_FindDirectTargets | |
| RiskCategory_Intermediate-mRNAseq_Clustering_CNMF | |
| RiskCategory_Intermediate-mRNAseq_Clustering_Consensus | |
| RiskCategory_Intermediate-mRNA_Clustering_CNMF | |
| RiskCategory_Intermediate-mRNA_Clustering_Consensus | |
| RiskCategory_Intermediate-mRNA_Preprocess_Median | |
| RiskCategory_Intermediate-Mutation_Assessor | |
| RiskCategory_Intermediate-MutSigNozzleReport1.5 | |
| RiskCategory_Intermediate-MutSigNozzleReport2.0 | |
| RiskCategory_Intermediate-MutSigNozzleReportCV | |
| RiskCategory_Intermediate-MutSigNozzleReportMerged | |
| RiskCategory_Intermediate-MutSigPreprocess1.5 | |
| RiskCategory_Intermediate-MutSigPreprocess2.0 | |
| RiskCategory_Intermediate-MutSigRun1.5 | |
| RiskCategory_Intermediate-MutSigRun2.0 | |
| RiskCategory_Intermediate-MutSigRunCV | |
| RiskCategory_Intermediate-ParadigmPreprocess_mRNA | |
| RiskCategory_Intermediate-ParadigmPreprocess_RNASeq | |
| RiskCategory_Intermediate-Paradigm_mRNA | |
| RiskCategory_Intermediate-Paradigm_mRNA_And_CopyNumber | |
| RiskCategory_Intermediate-Paradigm_Prepare_mRNA | |
| RiskCategory_Intermediate-Paradigm_Prepare_mRNA_And_Copy_Number | |
| RiskCategory_Intermediate-Paradigm_Prepare_RNASeq | |
| RiskCategory_Intermediate-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| RiskCategory_Intermediate-Paradigm_Preprocess_mRNA | |
| RiskCategory_Intermediate-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| RiskCategory_Intermediate-Paradigm_Preprocess_RNASeq | |
| RiskCategory_Intermediate-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| RiskCategory_Intermediate-Paradigm_Report_Preprocess_mRNA | |
| RiskCategory_Intermediate-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| RiskCategory_Intermediate-Paradigm_Report_Preprocess_RNASeq | |
| RiskCategory_Intermediate-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| RiskCategory_Intermediate-Paradigm_RNASeq | |
| RiskCategory_Intermediate-Paradigm_RNASeq_And_Copy_Number | |
| RiskCategory_Intermediate-Pathway_FindEnrichedGenes | |
| RiskCategory_Intermediate-Pathway_Hotnet | |
| RiskCategory_Intermediate-Pathway_Paradigm_mRNA | |
| RiskCategory_Intermediate-Pathway_Paradigm_mRNA_And_Copy_Number | |
| RiskCategory_Intermediate-Pathway_Paradigm_RNASeq | |
| RiskCategory_Intermediate-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| RiskCategory_Intermediate-ProcessCoverageForMutSig1.5 | |
| RiskCategory_Intermediate-ProcessCoverageForMutSig2.0 | |
| RiskCategory_Intermediate-RPPA_Clustering_CNMF | |
| RiskCategory_Intermediate-RPPA_Clustering_Consensus | |
| RiskCategory_Intermediate-Clinical_Pick_Tier1 | |
| RiskCategory_Intermediate-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| RiskCategory_Intermediate-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| RiskCategory_Intermediate-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| RiskCategory_Intermediate-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| RiskCategory_Intermediate-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| RiskCategory_Intermediate-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| RiskCategory_Intermediate-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| RiskCategory_Intermediate-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| RiskCategory_Intermediate-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| RiskCategory_Intermediate-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| RiskCategory_Intermediate-Merge_Clinical | |
| RiskCategory_Intermediate-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| RiskCategory_Intermediate-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| RiskCategory_Intermediate-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| RiskCategory_Intermediate-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| RiskCategory_Intermediate-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| RiskCategory_Intermediate-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| RiskCategory_Intermediate-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| RiskCategory_Intermediate-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| RiskCategory_Intermediate-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| RiskCategory_Intermediate-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| RiskCategory_Intermediate-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| RiskCategory_Intermediate-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| RiskCategory_Intermediate-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| RiskCategory_Intermediate-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| RiskCategory_Intermediate-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| RiskCategory_Intermediate-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| RiskCategory_Intermediate-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| RiskCategory_Intermediate-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| RiskCategory_Intermediate-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| RiskCategory_Intermediate-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| RiskCategory_Intermediate-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| RiskCategory_Intermediate-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| RiskCategory_Intermediate-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| RiskCategory_Intermediate-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| RiskCategory_Intermediate-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| RiskCategory_Intermediate-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| RiskCategory_Intermediate-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| RiskCategory_Intermediate-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| RiskCategory_Intermediate-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| RiskCategory_Intermediate-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| RiskCategory_Intermediate-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| RiskCategory_Intermediate-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| RiskCategory_Intermediate-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| RiskCategory_Intermediate-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| RiskCategory_Intermediate-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| RiskCategory_Intermediate-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| RiskCategory_Intermediate-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| RiskCategory_Intermediate-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| RiskCategory_Intermediate-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| RiskCategory_Intermediate-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| RiskCategory_Intermediate-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| RiskCategory_Intermediate-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| RiskCategory_Intermediate-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| RiskCategory_Intermediate-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| RiskCategory_Intermediate-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| RiskCategory_Intermediate-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| RiskCategory_Intermediate-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| RiskCategory_Intermediate-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| RiskCategory_Intermediate-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| RiskCategory_Intermediate-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| RiskCategory_Intermediate-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| RiskCategory_Intermediate-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| RiskCategory_Intermediate-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| RiskCategory_Intermediate-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| RiskCategory_Intermediate-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| RiskCategory_Intermediate-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| RiskCategory_Intermediate-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| RiskCategory_Intermediate-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| RiskCategory_Intermediate-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| RiskCategory_Intermediate-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| RiskCategory_Intermediate-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| RiskCategory_Intermediate-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| RiskCategory_Intermediate-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| RiskCategory_Intermediate-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| RiskCategory_Intermediate-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| RiskCategory_Intermediate-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| RiskCategory_Intermediate-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| RiskCategory_Intermediate-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| RiskCategory_Intermediate-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| RiskCategory_Intermediate-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| RiskCategory_Intermediate-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| RiskCategory_Intermediate-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| RiskCategory_Intermediate-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| RiskCategory_Intermediate-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| RiskCategory_Intermediate-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| RiskCategory_Intermediate-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| RiskCategory_Intermediate-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| RiskCategory_Intermediate-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| RiskCategory_Intermediate-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| RiskCategory_Intermediate-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| RiskCategory_Intermediate-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| RiskCategory_Intermediate-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| RiskCategory_Intermediate-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| RiskCategory_Intermediate-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| RiskCategory_Intermediate-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| RiskCategory_Intermediate-mRNAseq_Preprocess | |
| RiskCategory_Intermediate-Mutation_Packager_Calls | |
| RiskCategory_Intermediate-Mutation_Packager_Coverage | |
| RiskCategory_Intermediate-RPPA_AnnotateWithGene | |
| RiskCategory_High-Add_CustomClinical | |
| RiskCategory_High-Add_CustomEvents | |
| RiskCategory_High-Aggregate_Gene_Status | |
| RiskCategory_High-Aggregate_Molecular_Subtype_Clusters | |
| RiskCategory_High-CoMut1.5 | |
| RiskCategory_High-CoMut2.0 | |
| RiskCategory_High-CoMutCV | |
| RiskCategory_High-CoMutMerged | |
| RiskCategory_High-CopyNumber_Clustering_CNMF | |
| RiskCategory_High-CopyNumber_Clustering_CNMF_armlevel | |
| RiskCategory_High-CopyNumber_Gistic2 | |
| RiskCategory_High-CopyNumber_Gistic2_Postprocess_Focal | |
| RiskCategory_High-Correlate_Clinical_vs_CopyNumber_Arm | |
| RiskCategory_High-Correlate_Clinical_vs_CopyNumber_Focal | |
| RiskCategory_High-Correlate_Clinical_vs_CustomEvents | |
| RiskCategory_High-Correlate_Clinical_vs_Methylation | |
| RiskCategory_High-Correlate_Clinical_vs_miR | |
| RiskCategory_High-Correlate_Clinical_vs_miRseq | |
| RiskCategory_High-Correlate_Clinical_vs_Molecular_Subtypes | |
| RiskCategory_High-Correlate_Clinical_vs_mRNA | |
| RiskCategory_High-Correlate_Clinical_vs_mRNAseq | |
| RiskCategory_High-Correlate_Clinical_vs_Mutation | |
| RiskCategory_High-Correlate_Clinical_vs_RPPA | |
| RiskCategory_High-Correlate_CopyNumber_vs_miR | |
| RiskCategory_High-Correlate_CopyNumber_vs_mRNA | |
| RiskCategory_High-Correlate_CopyNumber_vs_mRNAseq | |
| RiskCategory_High-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| RiskCategory_High-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| RiskCategory_High-Correlate_CustomClinical_vs_CustomEvents | |
| RiskCategory_High-Correlate_CustomClinical_vs_Methylation | |
| RiskCategory_High-Correlate_CustomClinical_vs_miRseq | |
| RiskCategory_High-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| RiskCategory_High-Correlate_CustomClinical_vs_mRNAseq | |
| RiskCategory_High-Correlate_CustomClinical_vs_Mutation | |
| RiskCategory_High-Correlate_CustomClinical_vs_RPPA | |
| RiskCategory_High-Correlate_Methylation_vs_mRNA | |
| RiskCategory_High-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| RiskCategory_High-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| RiskCategory_High-Correlate_molecularSubtype_vs_Mutation | |
| RiskCategory_High-expanded_coMutPlot | |
| RiskCategory_High-GenerateStickFigures1.5 | |
| RiskCategory_High-GenerateStickFigures2.0 | |
| RiskCategory_High-GenerateStickFiguresCV | |
| RiskCategory_High-GenerateStickFiguresMerged | |
| RiskCategory_High-LegoPlotter1.5 | |
| RiskCategory_High-LegoPlotter2.0 | |
| RiskCategory_High-LegoPlotterCV | |
| RiskCategory_High-LegoPlotterMerged | |
| RiskCategory_High-MergeMutSigRunResults | |
| RiskCategory_High-Methylation_Clustering_CNMF | |
| RiskCategory_High-Methylation_Preprocess | |
| RiskCategory_High-miRseq_Clustering_CNMF | |
| RiskCategory_High-miRseq_Clustering_Consensus | |
| RiskCategory_High-miRseq_Mature_Clustering_CNMF | |
| RiskCategory_High-miRseq_Mature_Clustering_Consensus | |
| RiskCategory_High-miRseq_Mature_Preprocess | |
| RiskCategory_High-miRseq_Preprocess | |
| RiskCategory_High-miR_Clustering_CNMF | |
| RiskCategory_High-miR_Clustering_Consensus | |
| RiskCategory_High-miR_FindDirectTargets | |
| RiskCategory_High-mRNAseq_Clustering_CNMF | |
| RiskCategory_High-mRNAseq_Clustering_Consensus | |
| RiskCategory_High-mRNA_Clustering_CNMF | |
| RiskCategory_High-mRNA_Clustering_Consensus | |
| RiskCategory_High-mRNA_Preprocess_Median | |
| RiskCategory_High-Mutation_Assessor | |
| RiskCategory_High-MutSigNozzleReport1.5 | |
| RiskCategory_High-MutSigNozzleReport2.0 | |
| RiskCategory_High-MutSigNozzleReportCV | |
| RiskCategory_High-MutSigNozzleReportMerged | |
| RiskCategory_High-MutSigPreprocess1.5 | |
| RiskCategory_High-MutSigPreprocess2.0 | |
| RiskCategory_High-MutSigRun1.5 | |
| RiskCategory_High-MutSigRun2.0 | |
| RiskCategory_High-MutSigRunCV | |
| RiskCategory_High-ParadigmPreprocess_mRNA | |
| RiskCategory_High-ParadigmPreprocess_RNASeq | |
| RiskCategory_High-Paradigm_mRNA | |
| RiskCategory_High-Paradigm_mRNA_And_CopyNumber | |
| RiskCategory_High-Paradigm_Prepare_mRNA | |
| RiskCategory_High-Paradigm_Prepare_mRNA_And_Copy_Number | |
| RiskCategory_High-Paradigm_Prepare_RNASeq | |
| RiskCategory_High-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| RiskCategory_High-Paradigm_Preprocess_mRNA | |
| RiskCategory_High-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| RiskCategory_High-Paradigm_Preprocess_RNASeq | |
| RiskCategory_High-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| RiskCategory_High-Paradigm_Report_Preprocess_mRNA | |
| RiskCategory_High-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| RiskCategory_High-Paradigm_Report_Preprocess_RNASeq | |
| RiskCategory_High-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| RiskCategory_High-Paradigm_RNASeq | |
| RiskCategory_High-Paradigm_RNASeq_And_Copy_Number | |
| RiskCategory_High-Pathway_FindEnrichedGenes | |
| RiskCategory_High-Pathway_Hotnet | |
| RiskCategory_High-Pathway_Paradigm_mRNA | |
| RiskCategory_High-Pathway_Paradigm_mRNA_And_Copy_Number | |
| RiskCategory_High-Pathway_Paradigm_RNASeq | |
| RiskCategory_High-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| RiskCategory_High-ProcessCoverageForMutSig1.5 | |
| RiskCategory_High-ProcessCoverageForMutSig2.0 | |
| RiskCategory_High-RPPA_Clustering_CNMF | |
| RiskCategory_High-RPPA_Clustering_Consensus | |
| RiskCategory_High-Clinical_Pick_Tier1 | |
| RiskCategory_High-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| RiskCategory_High-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| RiskCategory_High-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| RiskCategory_High-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| RiskCategory_High-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| RiskCategory_High-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| RiskCategory_High-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| RiskCategory_High-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| RiskCategory_High-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| RiskCategory_High-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| RiskCategory_High-Merge_Clinical | |
| RiskCategory_High-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| RiskCategory_High-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| RiskCategory_High-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| RiskCategory_High-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| RiskCategory_High-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| RiskCategory_High-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| RiskCategory_High-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| RiskCategory_High-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| RiskCategory_High-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| RiskCategory_High-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| RiskCategory_High-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| RiskCategory_High-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| RiskCategory_High-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| RiskCategory_High-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| RiskCategory_High-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| RiskCategory_High-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| RiskCategory_High-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| RiskCategory_High-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| RiskCategory_High-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| RiskCategory_High-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| RiskCategory_High-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| RiskCategory_High-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| RiskCategory_High-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| RiskCategory_High-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| RiskCategory_High-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| RiskCategory_High-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| RiskCategory_High-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| RiskCategory_High-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| RiskCategory_High-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| RiskCategory_High-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| RiskCategory_High-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| RiskCategory_High-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| RiskCategory_High-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| RiskCategory_High-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| RiskCategory_High-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| RiskCategory_High-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| RiskCategory_High-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| RiskCategory_High-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| RiskCategory_High-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| RiskCategory_High-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| RiskCategory_High-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| RiskCategory_High-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| RiskCategory_High-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| RiskCategory_High-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| RiskCategory_High-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| RiskCategory_High-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| RiskCategory_High-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| RiskCategory_High-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| RiskCategory_High-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| RiskCategory_High-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| RiskCategory_High-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| RiskCategory_High-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| RiskCategory_High-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| RiskCategory_High-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| RiskCategory_High-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| RiskCategory_High-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| RiskCategory_High-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| RiskCategory_High-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| RiskCategory_High-mRNAseq_Preprocess | |
| RiskCategory_High-Mutation_Packager_Calls | |
| RiskCategory_High-Mutation_Packager_Coverage | |
| RiskCategory_High-RPPA_AnnotateWithGene | |
| NT-Add_CustomClinical | |
| NT-Add_CustomEvents | |
| NT-Aggregate_Gene_Status | |
| NT-Aggregate_Molecular_Subtype_Clusters | |
| NT-CoMut1.5 | |
| NT-CoMut2.0 | |
| NT-CoMutCV | |
| NT-CoMutMerged | |
| NT-CopyNumber_Clustering_CNMF | |
| NT-CopyNumber_Clustering_CNMF_armlevel | |
| NT-CopyNumber_Gistic2 | |
| NT-CopyNumber_Gistic2_Postprocess_Focal | |
| NT-Correlate_Clinical_vs_CopyNumber_Arm | |
| NT-Correlate_Clinical_vs_CopyNumber_Focal | |
| NT-Correlate_Clinical_vs_CustomEvents | |
| NT-Correlate_Clinical_vs_Methylation | |
| NT-Correlate_Clinical_vs_miR | |
| NT-Correlate_Clinical_vs_miRseq | |
| NT-Correlate_Clinical_vs_Molecular_Subtypes | |
| NT-Correlate_Clinical_vs_mRNA | |
| NT-Correlate_Clinical_vs_mRNAseq | |
| NT-Correlate_Clinical_vs_Mutation | |
| NT-Correlate_Clinical_vs_RPPA | |
| NT-Correlate_CopyNumber_vs_miR | |
| NT-Correlate_CopyNumber_vs_mRNA | |
| NT-Correlate_CopyNumber_vs_mRNAseq | |
| NT-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| NT-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| NT-Correlate_CustomClinical_vs_CustomEvents | |
| NT-Correlate_CustomClinical_vs_Methylation | |
| NT-Correlate_CustomClinical_vs_miRseq | |
| NT-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| NT-Correlate_CustomClinical_vs_mRNAseq | |
| NT-Correlate_CustomClinical_vs_Mutation | |
| NT-Correlate_CustomClinical_vs_RPPA | |
| NT-Correlate_Methylation_vs_mRNA | |
| NT-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| NT-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| NT-Correlate_molecularSubtype_vs_Mutation | |
| NT-expanded_coMutPlot | |
| NT-GenerateStickFigures1.5 | |
| NT-GenerateStickFigures2.0 | |
| NT-GenerateStickFiguresCV | |
| NT-GenerateStickFiguresMerged | |
| NT-LegoPlotter1.5 | |
| NT-LegoPlotter2.0 | |
| NT-LegoPlotterCV | |
| NT-LegoPlotterMerged | |
| NT-MergeMutSigRunResults | |
| NT-Methylation_Clustering_CNMF | |
| NT-Methylation_Preprocess | |
| NT-miRseq_Clustering_CNMF | |
| NT-miRseq_Clustering_Consensus | |
| NT-miRseq_Mature_Clustering_CNMF | |
| NT-miRseq_Mature_Clustering_Consensus | |
| NT-miRseq_Mature_Preprocess | |
| NT-miRseq_Preprocess | |
| NT-miR_Clustering_CNMF | |
| NT-miR_Clustering_Consensus | |
| NT-miR_FindDirectTargets | |
| NT-mRNAseq_Clustering_CNMF | |
| NT-mRNAseq_Clustering_Consensus | |
| NT-mRNA_Clustering_CNMF | |
| NT-mRNA_Clustering_Consensus | |
| NT-mRNA_Preprocess_Median | |
| NT-Mutation_Assessor | |
| NT-MutSigNozzleReport1.5 | |
| NT-MutSigNozzleReport2.0 | |
| NT-MutSigNozzleReportCV | |
| NT-MutSigNozzleReportMerged | |
| NT-MutSigPreprocess1.5 | |
| NT-MutSigPreprocess2.0 | |
| NT-MutSigRun1.5 | |
| NT-MutSigRun2.0 | |
| NT-MutSigRunCV | |
| NT-ParadigmPreprocess_mRNA | |
| NT-ParadigmPreprocess_RNASeq | |
| NT-Paradigm_mRNA | |
| NT-Paradigm_mRNA_And_CopyNumber | |
| NT-Paradigm_Prepare_mRNA | |
| NT-Paradigm_Prepare_mRNA_And_Copy_Number | |
| NT-Paradigm_Prepare_RNASeq | |
| NT-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| NT-Paradigm_Preprocess_mRNA | |
| NT-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| NT-Paradigm_Preprocess_RNASeq | |
| NT-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| NT-Paradigm_Report_Preprocess_mRNA | |
| NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| NT-Paradigm_Report_Preprocess_RNASeq | |
| NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| NT-Paradigm_RNASeq | |
| NT-Paradigm_RNASeq_And_Copy_Number | |
| NT-Pathway_FindEnrichedGenes | |
| NT-Pathway_Hotnet | |
| NT-Pathway_Paradigm_mRNA | |
| NT-Pathway_Paradigm_mRNA_And_Copy_Number | |
| NT-Pathway_Paradigm_RNASeq | |
| NT-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| NT-ProcessCoverageForMutSig1.5 | |
| NT-ProcessCoverageForMutSig2.0 | |
| NT-RPPA_Clustering_CNMF | |
| NT-RPPA_Clustering_Consensus | |
| NT-Clinical_Pick_Tier1 | |
| NT-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| NT-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| NT-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| NT-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| NT-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| NT-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| NT-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| NT-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| NT-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| NT-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| NT-Merge_Clinical | |
| NT-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| NT-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| NT-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| NT-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| NT-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| NT-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| NT-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| NT-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| NT-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| NT-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| NT-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| NT-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| NT-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| NT-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| NT-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| NT-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| NT-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| NT-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| NT-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| NT-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| NT-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| NT-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| NT-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| NT-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| NT-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| NT-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| NT-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| NT-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| NT-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| NT-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| NT-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| NT-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| NT-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| NT-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| NT-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| NT-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| NT-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| NT-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| NT-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| NT-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| NT-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| NT-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| NT-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| NT-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| NT-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| NT-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| NT-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| NT-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| NT-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| NT-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| NT-mRNAseq_Preprocess | |
| NT-Mutation_Packager_Calls | |
| NT-Mutation_Packager_Coverage | |
| NT-RPPA_AnnotateWithGene | |
| NB-Add_CustomClinical | |
| NB-Add_CustomEvents | |
| NB-Aggregate_Gene_Status | |
| NB-Aggregate_Molecular_Subtype_Clusters | |
| NB-CoMut1.5 | |
| NB-CoMut2.0 | |
| NB-CoMutCV | |
| NB-CoMutMerged | |
| NB-CopyNumber_Clustering_CNMF | |
| NB-CopyNumber_Clustering_CNMF_armlevel | |
| NB-CopyNumber_Gistic2 | |
| NB-CopyNumber_Gistic2_Postprocess_Focal | |
| NB-Correlate_Clinical_vs_CopyNumber_Arm | |
| NB-Correlate_Clinical_vs_CopyNumber_Focal | |
| NB-Correlate_Clinical_vs_CustomEvents | |
| NB-Correlate_Clinical_vs_Methylation | |
| NB-Correlate_Clinical_vs_miR | |
| NB-Correlate_Clinical_vs_miRseq | |
| NB-Correlate_Clinical_vs_Molecular_Subtypes | |
| NB-Correlate_Clinical_vs_mRNA | |
| NB-Correlate_Clinical_vs_mRNAseq | |
| NB-Correlate_Clinical_vs_Mutation | |
| NB-Correlate_Clinical_vs_RPPA | |
| NB-Correlate_CopyNumber_vs_miR | |
| NB-Correlate_CopyNumber_vs_mRNA | |
| NB-Correlate_CopyNumber_vs_mRNAseq | |
| NB-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| NB-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| NB-Correlate_CustomClinical_vs_CustomEvents | |
| NB-Correlate_CustomClinical_vs_Methylation | |
| NB-Correlate_CustomClinical_vs_miRseq | |
| NB-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| NB-Correlate_CustomClinical_vs_mRNAseq | |
| NB-Correlate_CustomClinical_vs_Mutation | |
| NB-Correlate_CustomClinical_vs_RPPA | |
| NB-Correlate_Methylation_vs_mRNA | |
| NB-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| NB-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| NB-Correlate_molecularSubtype_vs_Mutation | |
| NB-expanded_coMutPlot | |
| NB-GenerateStickFigures1.5 | |
| NB-GenerateStickFigures2.0 | |
| NB-GenerateStickFiguresCV | |
| NB-GenerateStickFiguresMerged | |
| NB-LegoPlotter1.5 | |
| NB-LegoPlotter2.0 | |
| NB-LegoPlotterCV | |
| NB-LegoPlotterMerged | |
| NB-MergeMutSigRunResults | |
| NB-Methylation_Clustering_CNMF | |
| NB-Methylation_Preprocess | |
| NB-miRseq_Clustering_CNMF | |
| NB-miRseq_Clustering_Consensus | |
| NB-miRseq_Mature_Clustering_CNMF | |
| NB-miRseq_Mature_Clustering_Consensus | |
| NB-miRseq_Mature_Preprocess | |
| NB-miRseq_Preprocess | |
| NB-miR_Clustering_CNMF | |
| NB-miR_Clustering_Consensus | |
| NB-miR_FindDirectTargets | |
| NB-mRNAseq_Clustering_CNMF | |
| NB-mRNAseq_Clustering_Consensus | |
| NB-mRNA_Clustering_CNMF | |
| NB-mRNA_Clustering_Consensus | |
| NB-mRNA_Preprocess_Median | |
| NB-Mutation_Assessor | |
| NB-MutSigNozzleReport1.5 | |
| NB-MutSigNozzleReport2.0 | |
| NB-MutSigNozzleReportCV | |
| NB-MutSigNozzleReportMerged | |
| NB-MutSigPreprocess1.5 | |
| NB-MutSigPreprocess2.0 | |
| NB-MutSigRun1.5 | |
| NB-MutSigRun2.0 | |
| NB-MutSigRunCV | |
| NB-ParadigmPreprocess_mRNA | |
| NB-ParadigmPreprocess_RNASeq | |
| NB-Paradigm_mRNA | |
| NB-Paradigm_mRNA_And_CopyNumber | |
| NB-Paradigm_Prepare_mRNA | |
| NB-Paradigm_Prepare_mRNA_And_Copy_Number | |
| NB-Paradigm_Prepare_RNASeq | |
| NB-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| NB-Paradigm_Preprocess_mRNA | |
| NB-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| NB-Paradigm_Preprocess_RNASeq | |
| NB-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| NB-Paradigm_Report_Preprocess_mRNA | |
| NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| NB-Paradigm_Report_Preprocess_RNASeq | |
| NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| NB-Paradigm_RNASeq | |
| NB-Paradigm_RNASeq_And_Copy_Number | |
| NB-Pathway_FindEnrichedGenes | |
| NB-Pathway_Hotnet | |
| NB-Pathway_Paradigm_mRNA | |
| NB-Pathway_Paradigm_mRNA_And_Copy_Number | |
| NB-Pathway_Paradigm_RNASeq | |
| NB-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| NB-ProcessCoverageForMutSig1.5 | |
| NB-ProcessCoverageForMutSig2.0 | |
| NB-RPPA_Clustering_CNMF | |
| NB-RPPA_Clustering_Consensus | |
| NB-Clinical_Pick_Tier1 | |
| NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| NB-Merge_Clinical | |
| NB-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| NB-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| NB-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| NB-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| NB-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| NB-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| NB-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| NB-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| NB-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| NB-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| NB-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| NB-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| NB-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| NB-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| NB-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| NB-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| NB-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| NB-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| NB-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| NB-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| NB-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| NB-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| NB-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| NB-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| NB-mRNAseq_Preprocess | |
| NB-Mutation_Packager_Calls | |
| NB-Mutation_Packager_Coverage | |
| NB-RPPA_AnnotateWithGene | |
| Mut_RAS-Add_CustomClinical | |
| Mut_RAS-Add_CustomEvents | |
| Mut_RAS-Aggregate_Gene_Status | |
| Mut_RAS-Aggregate_Molecular_Subtype_Clusters | |
| Mut_RAS-CoMut1.5 | |
| Mut_RAS-CoMut2.0 | |
| Mut_RAS-CoMutCV | |
| Mut_RAS-CoMutMerged | |
| Mut_RAS-CopyNumber_Clustering_CNMF | |
| Mut_RAS-CopyNumber_Clustering_CNMF_armlevel | |
| Mut_RAS-CopyNumber_Gistic2 | |
| Mut_RAS-CopyNumber_Gistic2_Postprocess_Focal | |
| Mut_RAS-Correlate_Clinical_vs_CopyNumber_Arm | |
| Mut_RAS-Correlate_Clinical_vs_CopyNumber_Focal | |
| Mut_RAS-Correlate_Clinical_vs_CustomEvents | |
| Mut_RAS-Correlate_Clinical_vs_Methylation | |
| Mut_RAS-Correlate_Clinical_vs_miR | |
| Mut_RAS-Correlate_Clinical_vs_miRseq | |
| Mut_RAS-Correlate_Clinical_vs_Molecular_Subtypes | |
| Mut_RAS-Correlate_Clinical_vs_mRNA | |
| Mut_RAS-Correlate_Clinical_vs_mRNAseq | |
| Mut_RAS-Correlate_Clinical_vs_Mutation | |
| Mut_RAS-Correlate_Clinical_vs_RPPA | |
| Mut_RAS-Correlate_CopyNumber_vs_miR | |
| Mut_RAS-Correlate_CopyNumber_vs_mRNA | |
| Mut_RAS-Correlate_CopyNumber_vs_mRNAseq | |
| Mut_RAS-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| Mut_RAS-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| Mut_RAS-Correlate_CustomClinical_vs_CustomEvents | |
| Mut_RAS-Correlate_CustomClinical_vs_Methylation | |
| Mut_RAS-Correlate_CustomClinical_vs_miRseq | |
| Mut_RAS-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| Mut_RAS-Correlate_CustomClinical_vs_mRNAseq | |
| Mut_RAS-Correlate_CustomClinical_vs_Mutation | |
| Mut_RAS-Correlate_CustomClinical_vs_RPPA | |
| Mut_RAS-Correlate_Methylation_vs_mRNA | |
| Mut_RAS-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| Mut_RAS-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| Mut_RAS-Correlate_molecularSubtype_vs_Mutation | |
| Mut_RAS-expanded_coMutPlot | |
| Mut_RAS-GenerateStickFigures1.5 | |
| Mut_RAS-GenerateStickFigures2.0 | |
| Mut_RAS-GenerateStickFiguresCV | |
| Mut_RAS-GenerateStickFiguresMerged | |
| Mut_RAS-LegoPlotter1.5 | |
| Mut_RAS-LegoPlotter2.0 | |
| Mut_RAS-LegoPlotterCV | |
| Mut_RAS-LegoPlotterMerged | |
| Mut_RAS-MergeMutSigRunResults | |
| Mut_RAS-Methylation_Clustering_CNMF | |
| Mut_RAS-Methylation_Preprocess | |
| Mut_RAS-miRseq_Clustering_CNMF | |
| Mut_RAS-miRseq_Clustering_Consensus | |
| Mut_RAS-miRseq_Mature_Clustering_CNMF | |
| Mut_RAS-miRseq_Mature_Clustering_Consensus | |
| Mut_RAS-miRseq_Mature_Preprocess | |
| Mut_RAS-miRseq_Preprocess | |
| Mut_RAS-miR_Clustering_CNMF | |
| Mut_RAS-miR_Clustering_Consensus | |
| Mut_RAS-miR_FindDirectTargets | |
| Mut_RAS-mRNAseq_Clustering_CNMF | |
| Mut_RAS-mRNAseq_Clustering_Consensus | |
| Mut_RAS-mRNA_Clustering_CNMF | |
| Mut_RAS-mRNA_Clustering_Consensus | |
| Mut_RAS-mRNA_Preprocess_Median | |
| Mut_RAS-Mutation_Assessor | |
| Mut_RAS-MutSigNozzleReport1.5 | |
| Mut_RAS-MutSigNozzleReport2.0 | |
| Mut_RAS-MutSigNozzleReportCV | |
| Mut_RAS-MutSigNozzleReportMerged | |
| Mut_RAS-MutSigPreprocess1.5 | |
| Mut_RAS-MutSigPreprocess2.0 | |
| Mut_RAS-MutSigRun1.5 | |
| Mut_RAS-MutSigRun2.0 | |
| Mut_RAS-MutSigRunCV | |
| Mut_RAS-ParadigmPreprocess_mRNA | |
| Mut_RAS-ParadigmPreprocess_RNASeq | |
| Mut_RAS-Paradigm_mRNA | |
| Mut_RAS-Paradigm_mRNA_And_CopyNumber | |
| Mut_RAS-Paradigm_Prepare_mRNA | |
| Mut_RAS-Paradigm_Prepare_mRNA_And_Copy_Number | |
| Mut_RAS-Paradigm_Prepare_RNASeq | |
| Mut_RAS-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| Mut_RAS-Paradigm_Preprocess_mRNA | |
| Mut_RAS-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| Mut_RAS-Paradigm_Preprocess_RNASeq | |
| Mut_RAS-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| Mut_RAS-Paradigm_Report_Preprocess_mRNA | |
| Mut_RAS-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| Mut_RAS-Paradigm_Report_Preprocess_RNASeq | |
| Mut_RAS-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| Mut_RAS-Paradigm_RNASeq | |
| Mut_RAS-Paradigm_RNASeq_And_Copy_Number | |
| Mut_RAS-Pathway_FindEnrichedGenes | |
| Mut_RAS-Pathway_Hotnet | |
| Mut_RAS-Pathway_Paradigm_mRNA | |
| Mut_RAS-Pathway_Paradigm_mRNA_And_Copy_Number | |
| Mut_RAS-Pathway_Paradigm_RNASeq | |
| Mut_RAS-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| Mut_RAS-ProcessCoverageForMutSig1.5 | |
| Mut_RAS-ProcessCoverageForMutSig2.0 | |
| Mut_RAS-RPPA_Clustering_CNMF | |
| Mut_RAS-RPPA_Clustering_Consensus | |
| Mut_RAS-Clinical_Pick_Tier1 | |
| Mut_RAS-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| Mut_RAS-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| Mut_RAS-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| Mut_RAS-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| Mut_RAS-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| Mut_RAS-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| Mut_RAS-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| Mut_RAS-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| Mut_RAS-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| Mut_RAS-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| Mut_RAS-Merge_Clinical | |
| Mut_RAS-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| Mut_RAS-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| Mut_RAS-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| Mut_RAS-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| Mut_RAS-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| Mut_RAS-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| Mut_RAS-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| Mut_RAS-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| Mut_RAS-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| Mut_RAS-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| Mut_RAS-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| Mut_RAS-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| Mut_RAS-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| Mut_RAS-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| Mut_RAS-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| Mut_RAS-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| Mut_RAS-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| Mut_RAS-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| Mut_RAS-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| Mut_RAS-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| Mut_RAS-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| Mut_RAS-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| Mut_RAS-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| Mut_RAS-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| Mut_RAS-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| Mut_RAS-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| Mut_RAS-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| Mut_RAS-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| Mut_RAS-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| Mut_RAS-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| Mut_RAS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| Mut_RAS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| Mut_RAS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| Mut_RAS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| Mut_RAS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| Mut_RAS-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| Mut_RAS-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| Mut_RAS-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| Mut_RAS-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| Mut_RAS-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| Mut_RAS-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| Mut_RAS-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| Mut_RAS-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| Mut_RAS-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| Mut_RAS-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| Mut_RAS-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| Mut_RAS-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| Mut_RAS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| Mut_RAS-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| Mut_RAS-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| Mut_RAS-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| Mut_RAS-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| Mut_RAS-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| Mut_RAS-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| Mut_RAS-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| Mut_RAS-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| Mut_RAS-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| Mut_RAS-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| Mut_RAS-mRNAseq_Preprocess | |
| Mut_RAS-Mutation_Packager_Calls | |
| Mut_RAS-Mutation_Packager_Coverage | |
| Mut_RAS-RPPA_AnnotateWithGene | |
| Mut_DARK-Add_CustomClinical | |
| Mut_DARK-Add_CustomEvents | |
| Mut_DARK-Aggregate_Gene_Status | |
| Mut_DARK-Aggregate_Molecular_Subtype_Clusters | |
| Mut_DARK-CoMut1.5 | |
| Mut_DARK-CoMut2.0 | |
| Mut_DARK-CoMutCV | |
| Mut_DARK-CoMutMerged | |
| Mut_DARK-CopyNumber_Clustering_CNMF | |
| Mut_DARK-CopyNumber_Clustering_CNMF_armlevel | |
| Mut_DARK-CopyNumber_Gistic2 | |
| Mut_DARK-CopyNumber_Gistic2_Postprocess_Focal | |
| Mut_DARK-Correlate_Clinical_vs_CopyNumber_Arm | |
| Mut_DARK-Correlate_Clinical_vs_CopyNumber_Focal | |
| Mut_DARK-Correlate_Clinical_vs_CustomEvents | |
| Mut_DARK-Correlate_Clinical_vs_Methylation | |
| Mut_DARK-Correlate_Clinical_vs_miR | |
| Mut_DARK-Correlate_Clinical_vs_miRseq | |
| Mut_DARK-Correlate_Clinical_vs_Molecular_Subtypes | |
| Mut_DARK-Correlate_Clinical_vs_mRNA | |
| Mut_DARK-Correlate_Clinical_vs_mRNAseq | |
| Mut_DARK-Correlate_Clinical_vs_Mutation | |
| Mut_DARK-Correlate_Clinical_vs_RPPA | |
| Mut_DARK-Correlate_CopyNumber_vs_miR | |
| Mut_DARK-Correlate_CopyNumber_vs_mRNA | |
| Mut_DARK-Correlate_CopyNumber_vs_mRNAseq | |
| Mut_DARK-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| Mut_DARK-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| Mut_DARK-Correlate_CustomClinical_vs_CustomEvents | |
| Mut_DARK-Correlate_CustomClinical_vs_Methylation | |
| Mut_DARK-Correlate_CustomClinical_vs_miRseq | |
| Mut_DARK-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| Mut_DARK-Correlate_CustomClinical_vs_mRNAseq | |
| Mut_DARK-Correlate_CustomClinical_vs_Mutation | |
| Mut_DARK-Correlate_CustomClinical_vs_RPPA | |
| Mut_DARK-Correlate_Methylation_vs_mRNA | |
| Mut_DARK-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| Mut_DARK-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| Mut_DARK-Correlate_molecularSubtype_vs_Mutation | |
| Mut_DARK-expanded_coMutPlot | |
| Mut_DARK-GenerateStickFigures1.5 | |
| Mut_DARK-GenerateStickFigures2.0 | |
| Mut_DARK-GenerateStickFiguresCV | |
| Mut_DARK-GenerateStickFiguresMerged | |
| Mut_DARK-LegoPlotter1.5 | |
| Mut_DARK-LegoPlotter2.0 | |
| Mut_DARK-LegoPlotterCV | |
| Mut_DARK-LegoPlotterMerged | |
| Mut_DARK-MergeMutSigRunResults | |
| Mut_DARK-Methylation_Clustering_CNMF | |
| Mut_DARK-Methylation_Preprocess | |
| Mut_DARK-miRseq_Clustering_CNMF | |
| Mut_DARK-miRseq_Clustering_Consensus | |
| Mut_DARK-miRseq_Mature_Clustering_CNMF | |
| Mut_DARK-miRseq_Mature_Clustering_Consensus | |
| Mut_DARK-miRseq_Mature_Preprocess | |
| Mut_DARK-miRseq_Preprocess | |
| Mut_DARK-miR_Clustering_CNMF | |
| Mut_DARK-miR_Clustering_Consensus | |
| Mut_DARK-miR_FindDirectTargets | |
| Mut_DARK-mRNAseq_Clustering_CNMF | |
| Mut_DARK-mRNAseq_Clustering_Consensus | |
| Mut_DARK-mRNA_Clustering_CNMF | |
| Mut_DARK-mRNA_Clustering_Consensus | |
| Mut_DARK-mRNA_Preprocess_Median | |
| Mut_DARK-Mutation_Assessor | |
| Mut_DARK-MutSigNozzleReport1.5 | |
| Mut_DARK-MutSigNozzleReport2.0 | |
| Mut_DARK-MutSigNozzleReportCV | |
| Mut_DARK-MutSigNozzleReportMerged | |
| Mut_DARK-MutSigPreprocess1.5 | |
| Mut_DARK-MutSigPreprocess2.0 | |
| Mut_DARK-MutSigRun1.5 | |
| Mut_DARK-MutSigRun2.0 | |
| Mut_DARK-MutSigRunCV | |
| Mut_DARK-ParadigmPreprocess_mRNA | |
| Mut_DARK-ParadigmPreprocess_RNASeq | |
| Mut_DARK-Paradigm_mRNA | |
| Mut_DARK-Paradigm_mRNA_And_CopyNumber | |
| Mut_DARK-Paradigm_Prepare_mRNA | |
| Mut_DARK-Paradigm_Prepare_mRNA_And_Copy_Number | |
| Mut_DARK-Paradigm_Prepare_RNASeq | |
| Mut_DARK-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| Mut_DARK-Paradigm_Preprocess_mRNA | |
| Mut_DARK-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| Mut_DARK-Paradigm_Preprocess_RNASeq | |
| Mut_DARK-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| Mut_DARK-Paradigm_Report_Preprocess_mRNA | |
| Mut_DARK-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| Mut_DARK-Paradigm_Report_Preprocess_RNASeq | |
| Mut_DARK-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| Mut_DARK-Paradigm_RNASeq | |
| Mut_DARK-Paradigm_RNASeq_And_Copy_Number | |
| Mut_DARK-Pathway_FindEnrichedGenes | |
| Mut_DARK-Pathway_Hotnet | |
| Mut_DARK-Pathway_Paradigm_mRNA | |
| Mut_DARK-Pathway_Paradigm_mRNA_And_Copy_Number | |
| Mut_DARK-Pathway_Paradigm_RNASeq | |
| Mut_DARK-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| Mut_DARK-ProcessCoverageForMutSig1.5 | |
| Mut_DARK-ProcessCoverageForMutSig2.0 | |
| Mut_DARK-RPPA_Clustering_CNMF | |
| Mut_DARK-RPPA_Clustering_Consensus | |
| Mut_DARK-Clinical_Pick_Tier1 | |
| Mut_DARK-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| Mut_DARK-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| Mut_DARK-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| Mut_DARK-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| Mut_DARK-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| Mut_DARK-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| Mut_DARK-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| Mut_DARK-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| Mut_DARK-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| Mut_DARK-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| Mut_DARK-Merge_Clinical | |
| Mut_DARK-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| Mut_DARK-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| Mut_DARK-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| Mut_DARK-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| Mut_DARK-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| Mut_DARK-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| Mut_DARK-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| Mut_DARK-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| Mut_DARK-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| Mut_DARK-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| Mut_DARK-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| Mut_DARK-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| Mut_DARK-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| Mut_DARK-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| Mut_DARK-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| Mut_DARK-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| Mut_DARK-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| Mut_DARK-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| Mut_DARK-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| Mut_DARK-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| Mut_DARK-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| Mut_DARK-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| Mut_DARK-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| Mut_DARK-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| Mut_DARK-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| Mut_DARK-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| Mut_DARK-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| Mut_DARK-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| Mut_DARK-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| Mut_DARK-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| Mut_DARK-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| Mut_DARK-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| Mut_DARK-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| Mut_DARK-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| Mut_DARK-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| Mut_DARK-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| Mut_DARK-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| Mut_DARK-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| Mut_DARK-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| Mut_DARK-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| Mut_DARK-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| Mut_DARK-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| Mut_DARK-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| Mut_DARK-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| Mut_DARK-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| Mut_DARK-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| Mut_DARK-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| Mut_DARK-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| Mut_DARK-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| Mut_DARK-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| Mut_DARK-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| Mut_DARK-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| Mut_DARK-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| Mut_DARK-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| Mut_DARK-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| Mut_DARK-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| Mut_DARK-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| Mut_DARK-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| Mut_DARK-mRNAseq_Preprocess | |
| Mut_DARK-Mutation_Packager_Calls | |
| Mut_DARK-Mutation_Packager_Coverage | |
| Mut_DARK-RPPA_AnnotateWithGene | |
| Mut_BRAF-Add_CustomClinical | |
| Mut_BRAF-Add_CustomEvents | |
| Mut_BRAF-Aggregate_Gene_Status | |
| Mut_BRAF-Aggregate_Molecular_Subtype_Clusters | |
| Mut_BRAF-CoMut1.5 | |
| Mut_BRAF-CoMut2.0 | |
| Mut_BRAF-CoMutCV | |
| Mut_BRAF-CoMutMerged | |
| Mut_BRAF-CopyNumber_Clustering_CNMF | |
| Mut_BRAF-CopyNumber_Clustering_CNMF_armlevel | |
| Mut_BRAF-CopyNumber_Gistic2 | |
| Mut_BRAF-CopyNumber_Gistic2_Postprocess_Focal | |
| Mut_BRAF-Correlate_Clinical_vs_CopyNumber_Arm | |
| Mut_BRAF-Correlate_Clinical_vs_CopyNumber_Focal | |
| Mut_BRAF-Correlate_Clinical_vs_CustomEvents | |
| Mut_BRAF-Correlate_Clinical_vs_Methylation | |
| Mut_BRAF-Correlate_Clinical_vs_miR | |
| Mut_BRAF-Correlate_Clinical_vs_miRseq | |
| Mut_BRAF-Correlate_Clinical_vs_Molecular_Subtypes | |
| Mut_BRAF-Correlate_Clinical_vs_mRNA | |
| Mut_BRAF-Correlate_Clinical_vs_mRNAseq | |
| Mut_BRAF-Correlate_Clinical_vs_Mutation | |
| Mut_BRAF-Correlate_Clinical_vs_RPPA | |
| Mut_BRAF-Correlate_CopyNumber_vs_miR | |
| Mut_BRAF-Correlate_CopyNumber_vs_mRNA | |
| Mut_BRAF-Correlate_CopyNumber_vs_mRNAseq | |
| Mut_BRAF-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| Mut_BRAF-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| Mut_BRAF-Correlate_CustomClinical_vs_CustomEvents | |
| Mut_BRAF-Correlate_CustomClinical_vs_Methylation | |
| Mut_BRAF-Correlate_CustomClinical_vs_miRseq | |
| Mut_BRAF-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| Mut_BRAF-Correlate_CustomClinical_vs_mRNAseq | |
| Mut_BRAF-Correlate_CustomClinical_vs_Mutation | |
| Mut_BRAF-Correlate_CustomClinical_vs_RPPA | |
| Mut_BRAF-Correlate_Methylation_vs_mRNA | |
| Mut_BRAF-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| Mut_BRAF-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| Mut_BRAF-Correlate_molecularSubtype_vs_Mutation | |
| Mut_BRAF-expanded_coMutPlot | |
| Mut_BRAF-GenerateStickFigures1.5 | |
| Mut_BRAF-GenerateStickFigures2.0 | |
| Mut_BRAF-GenerateStickFiguresCV | |
| Mut_BRAF-GenerateStickFiguresMerged | |
| Mut_BRAF-LegoPlotter1.5 | |
| Mut_BRAF-LegoPlotter2.0 | |
| Mut_BRAF-LegoPlotterCV | |
| Mut_BRAF-LegoPlotterMerged | |
| Mut_BRAF-MergeMutSigRunResults | |
| Mut_BRAF-Methylation_Clustering_CNMF | |
| Mut_BRAF-Methylation_Preprocess | |
| Mut_BRAF-miRseq_Clustering_CNMF | |
| Mut_BRAF-miRseq_Clustering_Consensus | |
| Mut_BRAF-miRseq_Mature_Clustering_CNMF | |
| Mut_BRAF-miRseq_Mature_Clustering_Consensus | |
| Mut_BRAF-miRseq_Mature_Preprocess | |
| Mut_BRAF-miRseq_Preprocess | |
| Mut_BRAF-miR_Clustering_CNMF | |
| Mut_BRAF-miR_Clustering_Consensus | |
| Mut_BRAF-miR_FindDirectTargets | |
| Mut_BRAF-mRNAseq_Clustering_CNMF | |
| Mut_BRAF-mRNAseq_Clustering_Consensus | |
| Mut_BRAF-mRNA_Clustering_CNMF | |
| Mut_BRAF-mRNA_Clustering_Consensus | |
| Mut_BRAF-mRNA_Preprocess_Median | |
| Mut_BRAF-Mutation_Assessor | |
| Mut_BRAF-MutSigNozzleReport1.5 | |
| Mut_BRAF-MutSigNozzleReport2.0 | |
| Mut_BRAF-MutSigNozzleReportCV | |
| Mut_BRAF-MutSigNozzleReportMerged | |
| Mut_BRAF-MutSigPreprocess1.5 | |
| Mut_BRAF-MutSigPreprocess2.0 | |
| Mut_BRAF-MutSigRun1.5 | |
| Mut_BRAF-MutSigRun2.0 | |
| Mut_BRAF-MutSigRunCV | |
| Mut_BRAF-ParadigmPreprocess_mRNA | |
| Mut_BRAF-ParadigmPreprocess_RNASeq | |
| Mut_BRAF-Paradigm_mRNA | |
| Mut_BRAF-Paradigm_mRNA_And_CopyNumber | |
| Mut_BRAF-Paradigm_Prepare_mRNA | |
| Mut_BRAF-Paradigm_Prepare_mRNA_And_Copy_Number | |
| Mut_BRAF-Paradigm_Prepare_RNASeq | |
| Mut_BRAF-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| Mut_BRAF-Paradigm_Preprocess_mRNA | |
| Mut_BRAF-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| Mut_BRAF-Paradigm_Preprocess_RNASeq | |
| Mut_BRAF-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| Mut_BRAF-Paradigm_Report_Preprocess_mRNA | |
| Mut_BRAF-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| Mut_BRAF-Paradigm_Report_Preprocess_RNASeq | |
| Mut_BRAF-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| Mut_BRAF-Paradigm_RNASeq | |
| Mut_BRAF-Paradigm_RNASeq_And_Copy_Number | |
| Mut_BRAF-Pathway_FindEnrichedGenes | |
| Mut_BRAF-Pathway_Hotnet | |
| Mut_BRAF-Pathway_Paradigm_mRNA | |
| Mut_BRAF-Pathway_Paradigm_mRNA_And_Copy_Number | |
| Mut_BRAF-Pathway_Paradigm_RNASeq | |
| Mut_BRAF-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| Mut_BRAF-ProcessCoverageForMutSig1.5 | |
| Mut_BRAF-ProcessCoverageForMutSig2.0 | |
| Mut_BRAF-RPPA_Clustering_CNMF | |
| Mut_BRAF-RPPA_Clustering_Consensus | |
| Mut_BRAF-Clinical_Pick_Tier1 | |
| Mut_BRAF-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| Mut_BRAF-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| Mut_BRAF-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| Mut_BRAF-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| Mut_BRAF-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| Mut_BRAF-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| Mut_BRAF-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| Mut_BRAF-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| Mut_BRAF-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| Mut_BRAF-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| Mut_BRAF-Merge_Clinical | |
| Mut_BRAF-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| Mut_BRAF-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| Mut_BRAF-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| Mut_BRAF-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| Mut_BRAF-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| Mut_BRAF-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| Mut_BRAF-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| Mut_BRAF-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| Mut_BRAF-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| Mut_BRAF-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| Mut_BRAF-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| Mut_BRAF-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| Mut_BRAF-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| Mut_BRAF-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| Mut_BRAF-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| Mut_BRAF-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| Mut_BRAF-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| Mut_BRAF-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| Mut_BRAF-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| Mut_BRAF-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| Mut_BRAF-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| Mut_BRAF-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| Mut_BRAF-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| Mut_BRAF-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| Mut_BRAF-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| Mut_BRAF-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| Mut_BRAF-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| Mut_BRAF-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| Mut_BRAF-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| Mut_BRAF-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| Mut_BRAF-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| Mut_BRAF-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| Mut_BRAF-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| Mut_BRAF-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| Mut_BRAF-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| Mut_BRAF-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| Mut_BRAF-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| Mut_BRAF-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| Mut_BRAF-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| Mut_BRAF-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| Mut_BRAF-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| Mut_BRAF-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| Mut_BRAF-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| Mut_BRAF-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| Mut_BRAF-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| Mut_BRAF-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| Mut_BRAF-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| Mut_BRAF-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| Mut_BRAF-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| Mut_BRAF-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| Mut_BRAF-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| Mut_BRAF-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| Mut_BRAF-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| Mut_BRAF-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| Mut_BRAF-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| Mut_BRAF-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| Mut_BRAF-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| Mut_BRAF-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| Mut_BRAF-mRNAseq_Preprocess | |
| Mut_BRAF-Mutation_Packager_Calls | |
| Mut_BRAF-Mutation_Packager_Coverage | |
| Mut_BRAF-RPPA_AnnotateWithGene | |
| HistologicalType_Tall_cell-Add_CustomClinical | |
| HistologicalType_Tall_cell-Add_CustomEvents | |
| HistologicalType_Tall_cell-Aggregate_Gene_Status | |
| HistologicalType_Tall_cell-Aggregate_Molecular_Subtype_Clusters | |
| HistologicalType_Tall_cell-CoMut1.5 | |
| HistologicalType_Tall_cell-CoMut2.0 | |
| HistologicalType_Tall_cell-CoMutCV | |
| HistologicalType_Tall_cell-CoMutMerged | |
| HistologicalType_Tall_cell-CopyNumber_Clustering_CNMF | |
| HistologicalType_Tall_cell-CopyNumber_Clustering_CNMF_armlevel | |
| HistologicalType_Tall_cell-CopyNumber_Gistic2 | |
| HistologicalType_Tall_cell-CopyNumber_Gistic2_Postprocess_Focal | |
| HistologicalType_Tall_cell-Correlate_Clinical_vs_CopyNumber_Arm | |
| HistologicalType_Tall_cell-Correlate_Clinical_vs_CopyNumber_Focal | |
| HistologicalType_Tall_cell-Correlate_Clinical_vs_CustomEvents | |
| HistologicalType_Tall_cell-Correlate_Clinical_vs_Methylation | |
| HistologicalType_Tall_cell-Correlate_Clinical_vs_miR | |
| HistologicalType_Tall_cell-Correlate_Clinical_vs_miRseq | |
| HistologicalType_Tall_cell-Correlate_Clinical_vs_Molecular_Subtypes | |
| HistologicalType_Tall_cell-Correlate_Clinical_vs_mRNA | |
| HistologicalType_Tall_cell-Correlate_Clinical_vs_mRNAseq | |
| HistologicalType_Tall_cell-Correlate_Clinical_vs_Mutation | |
| HistologicalType_Tall_cell-Correlate_Clinical_vs_RPPA | |
| HistologicalType_Tall_cell-Correlate_CopyNumber_vs_miR | |
| HistologicalType_Tall_cell-Correlate_CopyNumber_vs_mRNA | |
| HistologicalType_Tall_cell-Correlate_CopyNumber_vs_mRNAseq | |
| HistologicalType_Tall_cell-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| HistologicalType_Tall_cell-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| HistologicalType_Tall_cell-Correlate_CustomClinical_vs_CustomEvents | |
| HistologicalType_Tall_cell-Correlate_CustomClinical_vs_Methylation | |
| HistologicalType_Tall_cell-Correlate_CustomClinical_vs_miRseq | |
| HistologicalType_Tall_cell-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| HistologicalType_Tall_cell-Correlate_CustomClinical_vs_mRNAseq | |
| HistologicalType_Tall_cell-Correlate_CustomClinical_vs_Mutation | |
| HistologicalType_Tall_cell-Correlate_CustomClinical_vs_RPPA | |
| HistologicalType_Tall_cell-Correlate_Methylation_vs_mRNA | |
| HistologicalType_Tall_cell-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| HistologicalType_Tall_cell-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| HistologicalType_Tall_cell-Correlate_molecularSubtype_vs_Mutation | |
| HistologicalType_Tall_cell-expanded_coMutPlot | |
| HistologicalType_Tall_cell-GenerateStickFigures1.5 | |
| HistologicalType_Tall_cell-GenerateStickFigures2.0 | |
| HistologicalType_Tall_cell-GenerateStickFiguresCV | |
| HistologicalType_Tall_cell-GenerateStickFiguresMerged | |
| HistologicalType_Tall_cell-LegoPlotter1.5 | |
| HistologicalType_Tall_cell-LegoPlotter2.0 | |
| HistologicalType_Tall_cell-LegoPlotterCV | |
| HistologicalType_Tall_cell-LegoPlotterMerged | |
| HistologicalType_Tall_cell-MergeMutSigRunResults | |
| HistologicalType_Tall_cell-Methylation_Clustering_CNMF | |
| HistologicalType_Tall_cell-Methylation_Preprocess | |
| HistologicalType_Tall_cell-miRseq_Clustering_CNMF | |
| HistologicalType_Tall_cell-miRseq_Clustering_Consensus | |
| HistologicalType_Tall_cell-miRseq_Mature_Clustering_CNMF | |
| HistologicalType_Tall_cell-miRseq_Mature_Clustering_Consensus | |
| HistologicalType_Tall_cell-miRseq_Mature_Preprocess | |
| HistologicalType_Tall_cell-miRseq_Preprocess | |
| HistologicalType_Tall_cell-miR_Clustering_CNMF | |
| HistologicalType_Tall_cell-miR_Clustering_Consensus | |
| HistologicalType_Tall_cell-miR_FindDirectTargets | |
| HistologicalType_Tall_cell-mRNAseq_Clustering_CNMF | |
| HistologicalType_Tall_cell-mRNAseq_Clustering_Consensus | |
| HistologicalType_Tall_cell-mRNA_Clustering_CNMF | |
| HistologicalType_Tall_cell-mRNA_Clustering_Consensus | |
| HistologicalType_Tall_cell-mRNA_Preprocess_Median | |
| HistologicalType_Tall_cell-Mutation_Assessor | |
| HistologicalType_Tall_cell-MutSigNozzleReport1.5 | |
| HistologicalType_Tall_cell-MutSigNozzleReport2.0 | |
| HistologicalType_Tall_cell-MutSigNozzleReportCV | |
| HistologicalType_Tall_cell-MutSigNozzleReportMerged | |
| HistologicalType_Tall_cell-MutSigPreprocess1.5 | |
| HistologicalType_Tall_cell-MutSigPreprocess2.0 | |
| HistologicalType_Tall_cell-MutSigRun1.5 | |
| HistologicalType_Tall_cell-MutSigRun2.0 | |
| HistologicalType_Tall_cell-MutSigRunCV | |
| HistologicalType_Tall_cell-ParadigmPreprocess_mRNA | |
| HistologicalType_Tall_cell-ParadigmPreprocess_RNASeq | |
| HistologicalType_Tall_cell-Paradigm_mRNA | |
| HistologicalType_Tall_cell-Paradigm_mRNA_And_CopyNumber | |
| HistologicalType_Tall_cell-Paradigm_Prepare_mRNA | |
| HistologicalType_Tall_cell-Paradigm_Prepare_mRNA_And_Copy_Number | |
| HistologicalType_Tall_cell-Paradigm_Prepare_RNASeq | |
| HistologicalType_Tall_cell-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| HistologicalType_Tall_cell-Paradigm_Preprocess_mRNA | |
| HistologicalType_Tall_cell-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| HistologicalType_Tall_cell-Paradigm_Preprocess_RNASeq | |
| HistologicalType_Tall_cell-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| HistologicalType_Tall_cell-Paradigm_Report_Preprocess_mRNA | |
| HistologicalType_Tall_cell-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| HistologicalType_Tall_cell-Paradigm_Report_Preprocess_RNASeq | |
| HistologicalType_Tall_cell-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| HistologicalType_Tall_cell-Paradigm_RNASeq | |
| HistologicalType_Tall_cell-Paradigm_RNASeq_And_Copy_Number | |
| HistologicalType_Tall_cell-Pathway_FindEnrichedGenes | |
| HistologicalType_Tall_cell-Pathway_Hotnet | |
| HistologicalType_Tall_cell-Pathway_Paradigm_mRNA | |
| HistologicalType_Tall_cell-Pathway_Paradigm_mRNA_And_Copy_Number | |
| HistologicalType_Tall_cell-Pathway_Paradigm_RNASeq | |
| HistologicalType_Tall_cell-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| HistologicalType_Tall_cell-ProcessCoverageForMutSig1.5 | |
| HistologicalType_Tall_cell-ProcessCoverageForMutSig2.0 | |
| HistologicalType_Tall_cell-RPPA_Clustering_CNMF | |
| HistologicalType_Tall_cell-RPPA_Clustering_Consensus | |
| HistologicalType_Tall_cell-Clinical_Pick_Tier1 | |
| HistologicalType_Tall_cell-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| HistologicalType_Tall_cell-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| HistologicalType_Tall_cell-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| HistologicalType_Tall_cell-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| HistologicalType_Tall_cell-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| HistologicalType_Tall_cell-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| HistologicalType_Tall_cell-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| HistologicalType_Tall_cell-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| HistologicalType_Tall_cell-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| HistologicalType_Tall_cell-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| HistologicalType_Tall_cell-Merge_Clinical | |
| HistologicalType_Tall_cell-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| HistologicalType_Tall_cell-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| HistologicalType_Tall_cell-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| HistologicalType_Tall_cell-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| HistologicalType_Tall_cell-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| HistologicalType_Tall_cell-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| HistologicalType_Tall_cell-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| HistologicalType_Tall_cell-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| HistologicalType_Tall_cell-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| HistologicalType_Tall_cell-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| HistologicalType_Tall_cell-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| HistologicalType_Tall_cell-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| HistologicalType_Tall_cell-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| HistologicalType_Tall_cell-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| HistologicalType_Tall_cell-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| HistologicalType_Tall_cell-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| HistologicalType_Tall_cell-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| HistologicalType_Tall_cell-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| HistologicalType_Tall_cell-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| HistologicalType_Tall_cell-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| HistologicalType_Tall_cell-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| HistologicalType_Tall_cell-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| HistologicalType_Tall_cell-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| HistologicalType_Tall_cell-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| HistologicalType_Tall_cell-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| HistologicalType_Tall_cell-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| HistologicalType_Tall_cell-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| HistologicalType_Tall_cell-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| HistologicalType_Tall_cell-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| HistologicalType_Tall_cell-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| HistologicalType_Tall_cell-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| HistologicalType_Tall_cell-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| HistologicalType_Tall_cell-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| HistologicalType_Tall_cell-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| HistologicalType_Tall_cell-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| HistologicalType_Tall_cell-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| HistologicalType_Tall_cell-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| HistologicalType_Tall_cell-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| HistologicalType_Tall_cell-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| HistologicalType_Tall_cell-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| HistologicalType_Tall_cell-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| HistologicalType_Tall_cell-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| HistologicalType_Tall_cell-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| HistologicalType_Tall_cell-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| HistologicalType_Tall_cell-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| HistologicalType_Tall_cell-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| HistologicalType_Tall_cell-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| HistologicalType_Tall_cell-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| HistologicalType_Tall_cell-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| HistologicalType_Tall_cell-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| HistologicalType_Tall_cell-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| HistologicalType_Tall_cell-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| HistologicalType_Tall_cell-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| HistologicalType_Tall_cell-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| HistologicalType_Tall_cell-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| HistologicalType_Tall_cell-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| HistologicalType_Tall_cell-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| HistologicalType_Tall_cell-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| HistologicalType_Tall_cell-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| HistologicalType_Tall_cell-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| HistologicalType_Tall_cell-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| HistologicalType_Tall_cell-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| HistologicalType_Tall_cell-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| HistologicalType_Tall_cell-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| HistologicalType_Tall_cell-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| HistologicalType_Tall_cell-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| HistologicalType_Tall_cell-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| HistologicalType_Tall_cell-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| HistologicalType_Tall_cell-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| HistologicalType_Tall_cell-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| HistologicalType_Tall_cell-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| HistologicalType_Tall_cell-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| HistologicalType_Tall_cell-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| HistologicalType_Tall_cell-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| HistologicalType_Tall_cell-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| HistologicalType_Tall_cell-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| HistologicalType_Tall_cell-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| HistologicalType_Tall_cell-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| HistologicalType_Tall_cell-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| HistologicalType_Tall_cell-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| HistologicalType_Tall_cell-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| HistologicalType_Tall_cell-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| HistologicalType_Tall_cell-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| HistologicalType_Tall_cell-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| HistologicalType_Tall_cell-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| HistologicalType_Tall_cell-mRNAseq_Preprocess | |
| HistologicalType_Tall_cell-Mutation_Packager_Calls | |
| HistologicalType_Tall_cell-Mutation_Packager_Coverage | |
| HistologicalType_Tall_cell-RPPA_AnnotateWithGene | |
| HistologicalType_Other-Add_CustomClinical | |
| HistologicalType_Other-Add_CustomEvents | |
| HistologicalType_Other-Aggregate_Gene_Status | |
| HistologicalType_Other-Aggregate_Molecular_Subtype_Clusters | |
| HistologicalType_Other-CoMut1.5 | |
| HistologicalType_Other-CoMut2.0 | |
| HistologicalType_Other-CoMutCV | |
| HistologicalType_Other-CoMutMerged | |
| HistologicalType_Other-CopyNumber_Clustering_CNMF | |
| HistologicalType_Other-CopyNumber_Clustering_CNMF_armlevel | |
| HistologicalType_Other-CopyNumber_Gistic2 | |
| HistologicalType_Other-CopyNumber_Gistic2_Postprocess_Focal | |
| HistologicalType_Other-Correlate_Clinical_vs_CopyNumber_Arm | |
| HistologicalType_Other-Correlate_Clinical_vs_CopyNumber_Focal | |
| HistologicalType_Other-Correlate_Clinical_vs_CustomEvents | |
| HistologicalType_Other-Correlate_Clinical_vs_Methylation | |
| HistologicalType_Other-Correlate_Clinical_vs_miR | |
| HistologicalType_Other-Correlate_Clinical_vs_miRseq | |
| HistologicalType_Other-Correlate_Clinical_vs_Molecular_Subtypes | |
| HistologicalType_Other-Correlate_Clinical_vs_mRNA | |
| HistologicalType_Other-Correlate_Clinical_vs_mRNAseq | |
| HistologicalType_Other-Correlate_Clinical_vs_Mutation | |
| HistologicalType_Other-Correlate_Clinical_vs_RPPA | |
| HistologicalType_Other-Correlate_CopyNumber_vs_miR | |
| HistologicalType_Other-Correlate_CopyNumber_vs_mRNA | |
| HistologicalType_Other-Correlate_CopyNumber_vs_mRNAseq | |
| HistologicalType_Other-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| HistologicalType_Other-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| HistologicalType_Other-Correlate_CustomClinical_vs_CustomEvents | |
| HistologicalType_Other-Correlate_CustomClinical_vs_Methylation | |
| HistologicalType_Other-Correlate_CustomClinical_vs_miRseq | |
| HistologicalType_Other-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| HistologicalType_Other-Correlate_CustomClinical_vs_mRNAseq | |
| HistologicalType_Other-Correlate_CustomClinical_vs_Mutation | |
| HistologicalType_Other-Correlate_CustomClinical_vs_RPPA | |
| HistologicalType_Other-Correlate_Methylation_vs_mRNA | |
| HistologicalType_Other-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| HistologicalType_Other-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| HistologicalType_Other-Correlate_molecularSubtype_vs_Mutation | |
| HistologicalType_Other-expanded_coMutPlot | |
| HistologicalType_Other-GenerateStickFigures1.5 | |
| HistologicalType_Other-GenerateStickFigures2.0 | |
| HistologicalType_Other-GenerateStickFiguresCV | |
| HistologicalType_Other-GenerateStickFiguresMerged | |
| HistologicalType_Other-LegoPlotter1.5 | |
| HistologicalType_Other-LegoPlotter2.0 | |
| HistologicalType_Other-LegoPlotterCV | |
| HistologicalType_Other-LegoPlotterMerged | |
| HistologicalType_Other-MergeMutSigRunResults | |
| HistologicalType_Other-Methylation_Clustering_CNMF | |
| HistologicalType_Other-Methylation_Preprocess | |
| HistologicalType_Other-miRseq_Clustering_CNMF | |
| HistologicalType_Other-miRseq_Clustering_Consensus | |
| HistologicalType_Other-miRseq_Mature_Clustering_CNMF | |
| HistologicalType_Other-miRseq_Mature_Clustering_Consensus | |
| HistologicalType_Other-miRseq_Mature_Preprocess | |
| HistologicalType_Other-miRseq_Preprocess | |
| HistologicalType_Other-miR_Clustering_CNMF | |
| HistologicalType_Other-miR_Clustering_Consensus | |
| HistologicalType_Other-miR_FindDirectTargets | |
| HistologicalType_Other-mRNAseq_Clustering_CNMF | |
| HistologicalType_Other-mRNAseq_Clustering_Consensus | |
| HistologicalType_Other-mRNA_Clustering_CNMF | |
| HistologicalType_Other-mRNA_Clustering_Consensus | |
| HistologicalType_Other-mRNA_Preprocess_Median | |
| HistologicalType_Other-Mutation_Assessor | |
| HistologicalType_Other-MutSigNozzleReport1.5 | |
| HistologicalType_Other-MutSigNozzleReport2.0 | |
| HistologicalType_Other-MutSigNozzleReportCV | |
| HistologicalType_Other-MutSigNozzleReportMerged | |
| HistologicalType_Other-MutSigPreprocess1.5 | |
| HistologicalType_Other-MutSigPreprocess2.0 | |
| HistologicalType_Other-MutSigRun1.5 | |
| HistologicalType_Other-MutSigRun2.0 | |
| HistologicalType_Other-MutSigRunCV | |
| HistologicalType_Other-ParadigmPreprocess_mRNA | |
| HistologicalType_Other-ParadigmPreprocess_RNASeq | |
| HistologicalType_Other-Paradigm_mRNA | |
| HistologicalType_Other-Paradigm_mRNA_And_CopyNumber | |
| HistologicalType_Other-Paradigm_Prepare_mRNA | |
| HistologicalType_Other-Paradigm_Prepare_mRNA_And_Copy_Number | |
| HistologicalType_Other-Paradigm_Prepare_RNASeq | |
| HistologicalType_Other-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| HistologicalType_Other-Paradigm_Preprocess_mRNA | |
| HistologicalType_Other-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| HistologicalType_Other-Paradigm_Preprocess_RNASeq | |
| HistologicalType_Other-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| HistologicalType_Other-Paradigm_Report_Preprocess_mRNA | |
| HistologicalType_Other-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| HistologicalType_Other-Paradigm_Report_Preprocess_RNASeq | |
| HistologicalType_Other-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| HistologicalType_Other-Paradigm_RNASeq | |
| HistologicalType_Other-Paradigm_RNASeq_And_Copy_Number | |
| HistologicalType_Other-Pathway_FindEnrichedGenes | |
| HistologicalType_Other-Pathway_Hotnet | |
| HistologicalType_Other-Pathway_Paradigm_mRNA | |
| HistologicalType_Other-Pathway_Paradigm_mRNA_And_Copy_Number | |
| HistologicalType_Other-Pathway_Paradigm_RNASeq | |
| HistologicalType_Other-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| HistologicalType_Other-ProcessCoverageForMutSig1.5 | |
| HistologicalType_Other-ProcessCoverageForMutSig2.0 | |
| HistologicalType_Other-RPPA_Clustering_CNMF | |
| HistologicalType_Other-RPPA_Clustering_Consensus | |
| HistologicalType_Other-Clinical_Pick_Tier1 | |
| HistologicalType_Other-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| HistologicalType_Other-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| HistologicalType_Other-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| HistologicalType_Other-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| HistologicalType_Other-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| HistologicalType_Other-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| HistologicalType_Other-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| HistologicalType_Other-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| HistologicalType_Other-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| HistologicalType_Other-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| HistologicalType_Other-Merge_Clinical | |
| HistologicalType_Other-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| HistologicalType_Other-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| HistologicalType_Other-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| HistologicalType_Other-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| HistologicalType_Other-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| HistologicalType_Other-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| HistologicalType_Other-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| HistologicalType_Other-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| HistologicalType_Other-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| HistologicalType_Other-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| HistologicalType_Other-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| HistologicalType_Other-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| HistologicalType_Other-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| HistologicalType_Other-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| HistologicalType_Other-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| HistologicalType_Other-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| HistologicalType_Other-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| HistologicalType_Other-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| HistologicalType_Other-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| HistologicalType_Other-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| HistologicalType_Other-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| HistologicalType_Other-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| HistologicalType_Other-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| HistologicalType_Other-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| HistologicalType_Other-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| HistologicalType_Other-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| HistologicalType_Other-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| HistologicalType_Other-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| HistologicalType_Other-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| HistologicalType_Other-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| HistologicalType_Other-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| HistologicalType_Other-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| HistologicalType_Other-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| HistologicalType_Other-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| HistologicalType_Other-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| HistologicalType_Other-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| HistologicalType_Other-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| HistologicalType_Other-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| HistologicalType_Other-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| HistologicalType_Other-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| HistologicalType_Other-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| HistologicalType_Other-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| HistologicalType_Other-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| HistologicalType_Other-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| HistologicalType_Other-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| HistologicalType_Other-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| HistologicalType_Other-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| HistologicalType_Other-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| HistologicalType_Other-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| HistologicalType_Other-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| HistologicalType_Other-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| HistologicalType_Other-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| HistologicalType_Other-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| HistologicalType_Other-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| HistologicalType_Other-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| HistologicalType_Other-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| HistologicalType_Other-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| HistologicalType_Other-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| HistologicalType_Other-mRNAseq_Preprocess | |
| HistologicalType_Other-Mutation_Packager_Calls | |
| HistologicalType_Other-Mutation_Packager_Coverage | |
| HistologicalType_Other-RPPA_AnnotateWithGene | |
| HistologicalType_Follicular-Add_CustomClinical | |
| HistologicalType_Follicular-Add_CustomEvents | |
| HistologicalType_Follicular-Aggregate_Gene_Status | |
| HistologicalType_Follicular-Aggregate_Molecular_Subtype_Clusters | |
| HistologicalType_Follicular-CoMut1.5 | |
| HistologicalType_Follicular-CoMut2.0 | |
| HistologicalType_Follicular-CoMutCV | |
| HistologicalType_Follicular-CoMutMerged | |
| HistologicalType_Follicular-CopyNumber_Clustering_CNMF | |
| HistologicalType_Follicular-CopyNumber_Clustering_CNMF_armlevel | |
| HistologicalType_Follicular-CopyNumber_Gistic2 | |
| HistologicalType_Follicular-CopyNumber_Gistic2_Postprocess_Focal | |
| HistologicalType_Follicular-Correlate_Clinical_vs_CopyNumber_Arm | |
| HistologicalType_Follicular-Correlate_Clinical_vs_CopyNumber_Focal | |
| HistologicalType_Follicular-Correlate_Clinical_vs_CustomEvents | |
| HistologicalType_Follicular-Correlate_Clinical_vs_Methylation | |
| HistologicalType_Follicular-Correlate_Clinical_vs_miR | |
| HistologicalType_Follicular-Correlate_Clinical_vs_miRseq | |
| HistologicalType_Follicular-Correlate_Clinical_vs_Molecular_Subtypes | |
| HistologicalType_Follicular-Correlate_Clinical_vs_mRNA | |
| HistologicalType_Follicular-Correlate_Clinical_vs_mRNAseq | |
| HistologicalType_Follicular-Correlate_Clinical_vs_Mutation | |
| HistologicalType_Follicular-Correlate_Clinical_vs_RPPA | |
| HistologicalType_Follicular-Correlate_CopyNumber_vs_miR | |
| HistologicalType_Follicular-Correlate_CopyNumber_vs_mRNA | |
| HistologicalType_Follicular-Correlate_CopyNumber_vs_mRNAseq | |
| HistologicalType_Follicular-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| HistologicalType_Follicular-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| HistologicalType_Follicular-Correlate_CustomClinical_vs_CustomEvents | |
| HistologicalType_Follicular-Correlate_CustomClinical_vs_Methylation | |
| HistologicalType_Follicular-Correlate_CustomClinical_vs_miRseq | |
| HistologicalType_Follicular-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| HistologicalType_Follicular-Correlate_CustomClinical_vs_mRNAseq | |
| HistologicalType_Follicular-Correlate_CustomClinical_vs_Mutation | |
| HistologicalType_Follicular-Correlate_CustomClinical_vs_RPPA | |
| HistologicalType_Follicular-Correlate_Methylation_vs_mRNA | |
| HistologicalType_Follicular-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| HistologicalType_Follicular-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| HistologicalType_Follicular-Correlate_molecularSubtype_vs_Mutation | |
| HistologicalType_Follicular-expanded_coMutPlot | |
| HistologicalType_Follicular-GenerateStickFigures1.5 | |
| HistologicalType_Follicular-GenerateStickFigures2.0 | |
| HistologicalType_Follicular-GenerateStickFiguresCV | |
| HistologicalType_Follicular-GenerateStickFiguresMerged | |
| HistologicalType_Follicular-LegoPlotter1.5 | |
| HistologicalType_Follicular-LegoPlotter2.0 | |
| HistologicalType_Follicular-LegoPlotterCV | |
| HistologicalType_Follicular-LegoPlotterMerged | |
| HistologicalType_Follicular-MergeMutSigRunResults | |
| HistologicalType_Follicular-Methylation_Clustering_CNMF | |
| HistologicalType_Follicular-Methylation_Preprocess | |
| HistologicalType_Follicular-miRseq_Clustering_CNMF | |
| HistologicalType_Follicular-miRseq_Clustering_Consensus | |
| HistologicalType_Follicular-miRseq_Mature_Clustering_CNMF | |
| HistologicalType_Follicular-miRseq_Mature_Clustering_Consensus | |
| HistologicalType_Follicular-miRseq_Mature_Preprocess | |
| HistologicalType_Follicular-miRseq_Preprocess | |
| HistologicalType_Follicular-miR_Clustering_CNMF | |
| HistologicalType_Follicular-miR_Clustering_Consensus | |
| HistologicalType_Follicular-miR_FindDirectTargets | |
| HistologicalType_Follicular-mRNAseq_Clustering_CNMF | |
| HistologicalType_Follicular-mRNAseq_Clustering_Consensus | |
| HistologicalType_Follicular-mRNA_Clustering_CNMF | |
| HistologicalType_Follicular-mRNA_Clustering_Consensus | |
| HistologicalType_Follicular-mRNA_Preprocess_Median | |
| HistologicalType_Follicular-Mutation_Assessor | |
| HistologicalType_Follicular-MutSigNozzleReport1.5 | |
| HistologicalType_Follicular-MutSigNozzleReport2.0 | |
| HistologicalType_Follicular-MutSigNozzleReportCV | |
| HistologicalType_Follicular-MutSigNozzleReportMerged | |
| HistologicalType_Follicular-MutSigPreprocess1.5 | |
| HistologicalType_Follicular-MutSigPreprocess2.0 | |
| HistologicalType_Follicular-MutSigRun1.5 | |
| HistologicalType_Follicular-MutSigRun2.0 | |
| HistologicalType_Follicular-MutSigRunCV | |
| HistologicalType_Follicular-ParadigmPreprocess_mRNA | |
| HistologicalType_Follicular-ParadigmPreprocess_RNASeq | |
| HistologicalType_Follicular-Paradigm_mRNA | |
| HistologicalType_Follicular-Paradigm_mRNA_And_CopyNumber | |
| HistologicalType_Follicular-Paradigm_Prepare_mRNA | |
| HistologicalType_Follicular-Paradigm_Prepare_mRNA_And_Copy_Number | |
| HistologicalType_Follicular-Paradigm_Prepare_RNASeq | |
| HistologicalType_Follicular-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| HistologicalType_Follicular-Paradigm_Preprocess_mRNA | |
| HistologicalType_Follicular-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| HistologicalType_Follicular-Paradigm_Preprocess_RNASeq | |
| HistologicalType_Follicular-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| HistologicalType_Follicular-Paradigm_Report_Preprocess_mRNA | |
| HistologicalType_Follicular-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| HistologicalType_Follicular-Paradigm_Report_Preprocess_RNASeq | |
| HistologicalType_Follicular-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| HistologicalType_Follicular-Paradigm_RNASeq | |
| HistologicalType_Follicular-Paradigm_RNASeq_And_Copy_Number | |
| HistologicalType_Follicular-Pathway_FindEnrichedGenes | |
| HistologicalType_Follicular-Pathway_Hotnet | |
| HistologicalType_Follicular-Pathway_Paradigm_mRNA | |
| HistologicalType_Follicular-Pathway_Paradigm_mRNA_And_Copy_Number | |
| HistologicalType_Follicular-Pathway_Paradigm_RNASeq | |
| HistologicalType_Follicular-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| HistologicalType_Follicular-ProcessCoverageForMutSig1.5 | |
| HistologicalType_Follicular-ProcessCoverageForMutSig2.0 | |
| HistologicalType_Follicular-RPPA_Clustering_CNMF | |
| HistologicalType_Follicular-RPPA_Clustering_Consensus | |
| HistologicalType_Follicular-Clinical_Pick_Tier1 | |
| HistologicalType_Follicular-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| HistologicalType_Follicular-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| HistologicalType_Follicular-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| HistologicalType_Follicular-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| HistologicalType_Follicular-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| HistologicalType_Follicular-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| HistologicalType_Follicular-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| HistologicalType_Follicular-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| HistologicalType_Follicular-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| HistologicalType_Follicular-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| HistologicalType_Follicular-Merge_Clinical | |
| HistologicalType_Follicular-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| HistologicalType_Follicular-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| HistologicalType_Follicular-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| HistologicalType_Follicular-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| HistologicalType_Follicular-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| HistologicalType_Follicular-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| HistologicalType_Follicular-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| HistologicalType_Follicular-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| HistologicalType_Follicular-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| HistologicalType_Follicular-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| HistologicalType_Follicular-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| HistologicalType_Follicular-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| HistologicalType_Follicular-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| HistologicalType_Follicular-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| HistologicalType_Follicular-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| HistologicalType_Follicular-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| HistologicalType_Follicular-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| HistologicalType_Follicular-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| HistologicalType_Follicular-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| HistologicalType_Follicular-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| HistologicalType_Follicular-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| HistologicalType_Follicular-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| HistologicalType_Follicular-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| HistologicalType_Follicular-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| HistologicalType_Follicular-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| HistologicalType_Follicular-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| HistologicalType_Follicular-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| HistologicalType_Follicular-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| HistologicalType_Follicular-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| HistologicalType_Follicular-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| HistologicalType_Follicular-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| HistologicalType_Follicular-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| HistologicalType_Follicular-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| HistologicalType_Follicular-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| HistologicalType_Follicular-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| HistologicalType_Follicular-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| HistologicalType_Follicular-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| HistologicalType_Follicular-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| HistologicalType_Follicular-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| HistologicalType_Follicular-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| HistologicalType_Follicular-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| HistologicalType_Follicular-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| HistologicalType_Follicular-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| HistologicalType_Follicular-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| HistologicalType_Follicular-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| HistologicalType_Follicular-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| HistologicalType_Follicular-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| HistologicalType_Follicular-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| HistologicalType_Follicular-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| HistologicalType_Follicular-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| HistologicalType_Follicular-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| HistologicalType_Follicular-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| HistologicalType_Follicular-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| HistologicalType_Follicular-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| HistologicalType_Follicular-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| HistologicalType_Follicular-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| HistologicalType_Follicular-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| HistologicalType_Follicular-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| HistologicalType_Follicular-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| HistologicalType_Follicular-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| HistologicalType_Follicular-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| HistologicalType_Follicular-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| HistologicalType_Follicular-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| HistologicalType_Follicular-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| HistologicalType_Follicular-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| HistologicalType_Follicular-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| HistologicalType_Follicular-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| HistologicalType_Follicular-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| HistologicalType_Follicular-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| HistologicalType_Follicular-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| HistologicalType_Follicular-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| HistologicalType_Follicular-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| HistologicalType_Follicular-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| HistologicalType_Follicular-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| HistologicalType_Follicular-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| HistologicalType_Follicular-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| HistologicalType_Follicular-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| HistologicalType_Follicular-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| HistologicalType_Follicular-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| HistologicalType_Follicular-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| HistologicalType_Follicular-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| HistologicalType_Follicular-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| HistologicalType_Follicular-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| HistologicalType_Follicular-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| HistologicalType_Follicular-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| HistologicalType_Follicular-mRNAseq_Preprocess | |
| HistologicalType_Follicular-Mutation_Packager_Calls | |
| HistologicalType_Follicular-Mutation_Packager_Coverage | |
| HistologicalType_Follicular-RPPA_AnnotateWithGene | |
| HistologicalType_Classical-Add_CustomClinical | |
| HistologicalType_Classical-Add_CustomEvents | |
| HistologicalType_Classical-Aggregate_Gene_Status | |
| HistologicalType_Classical-Aggregate_Molecular_Subtype_Clusters | |
| HistologicalType_Classical-CoMut1.5 | |
| HistologicalType_Classical-CoMut2.0 | |
| HistologicalType_Classical-CoMutCV | |
| HistologicalType_Classical-CoMutMerged | |
| HistologicalType_Classical-CopyNumber_Clustering_CNMF | |
| HistologicalType_Classical-CopyNumber_Clustering_CNMF_armlevel | |
| HistologicalType_Classical-CopyNumber_Gistic2 | |
| HistologicalType_Classical-CopyNumber_Gistic2_Postprocess_Focal | |
| HistologicalType_Classical-Correlate_Clinical_vs_CopyNumber_Arm | |
| HistologicalType_Classical-Correlate_Clinical_vs_CopyNumber_Focal | |
| HistologicalType_Classical-Correlate_Clinical_vs_CustomEvents | |
| HistologicalType_Classical-Correlate_Clinical_vs_Methylation | |
| HistologicalType_Classical-Correlate_Clinical_vs_miR | |
| HistologicalType_Classical-Correlate_Clinical_vs_miRseq | |
| HistologicalType_Classical-Correlate_Clinical_vs_Molecular_Subtypes | |
| HistologicalType_Classical-Correlate_Clinical_vs_mRNA | |
| HistologicalType_Classical-Correlate_Clinical_vs_mRNAseq | |
| HistologicalType_Classical-Correlate_Clinical_vs_Mutation | |
| HistologicalType_Classical-Correlate_Clinical_vs_RPPA | |
| HistologicalType_Classical-Correlate_CopyNumber_vs_miR | |
| HistologicalType_Classical-Correlate_CopyNumber_vs_mRNA | |
| HistologicalType_Classical-Correlate_CopyNumber_vs_mRNAseq | |
| HistologicalType_Classical-Correlate_CustomClinical_vs_CopyNumber_Arm | |
| HistologicalType_Classical-Correlate_CustomClinical_vs_CopyNumber_Focal | |
| HistologicalType_Classical-Correlate_CustomClinical_vs_CustomEvents | |
| HistologicalType_Classical-Correlate_CustomClinical_vs_Methylation | |
| HistologicalType_Classical-Correlate_CustomClinical_vs_miRseq | |
| HistologicalType_Classical-Correlate_CustomClinical_vs_Molecular_Subtypes | |
| HistologicalType_Classical-Correlate_CustomClinical_vs_mRNAseq | |
| HistologicalType_Classical-Correlate_CustomClinical_vs_Mutation | |
| HistologicalType_Classical-Correlate_CustomClinical_vs_RPPA | |
| HistologicalType_Classical-Correlate_Methylation_vs_mRNA | |
| HistologicalType_Classical-Correlate_molecularSubtype_vs_CopyNumber_Arm | |
| HistologicalType_Classical-Correlate_molecularSubtype_vs_CopyNumber_Focal | |
| HistologicalType_Classical-Correlate_molecularSubtype_vs_Mutation | |
| HistologicalType_Classical-expanded_coMutPlot | |
| HistologicalType_Classical-GenerateStickFigures1.5 | |
| HistologicalType_Classical-GenerateStickFigures2.0 | |
| HistologicalType_Classical-GenerateStickFiguresCV | |
| HistologicalType_Classical-GenerateStickFiguresMerged | |
| HistologicalType_Classical-LegoPlotter1.5 | |
| HistologicalType_Classical-LegoPlotter2.0 | |
| HistologicalType_Classical-LegoPlotterCV | |
| HistologicalType_Classical-LegoPlotterMerged | |
| HistologicalType_Classical-MergeMutSigRunResults | |
| HistologicalType_Classical-Methylation_Clustering_CNMF | |
| HistologicalType_Classical-Methylation_Preprocess | |
| HistologicalType_Classical-miRseq_Clustering_CNMF | |
| HistologicalType_Classical-miRseq_Clustering_Consensus | |
| HistologicalType_Classical-miRseq_Mature_Clustering_CNMF | |
| HistologicalType_Classical-miRseq_Mature_Clustering_Consensus | |
| HistologicalType_Classical-miRseq_Mature_Preprocess | |
| HistologicalType_Classical-miRseq_Preprocess | |
| HistologicalType_Classical-miR_Clustering_CNMF | |
| HistologicalType_Classical-miR_Clustering_Consensus | |
| HistologicalType_Classical-miR_FindDirectTargets | |
| HistologicalType_Classical-mRNAseq_Clustering_CNMF | |
| HistologicalType_Classical-mRNAseq_Clustering_Consensus | |
| HistologicalType_Classical-mRNA_Clustering_CNMF | |
| HistologicalType_Classical-mRNA_Clustering_Consensus | |
| HistologicalType_Classical-mRNA_Preprocess_Median | |
| HistologicalType_Classical-Mutation_Assessor | |
| HistologicalType_Classical-MutSigNozzleReport1.5 | |
| HistologicalType_Classical-MutSigNozzleReport2.0 | |
| HistologicalType_Classical-MutSigNozzleReportCV | |
| HistologicalType_Classical-MutSigNozzleReportMerged | |
| HistologicalType_Classical-MutSigPreprocess1.5 | |
| HistologicalType_Classical-MutSigPreprocess2.0 | |
| HistologicalType_Classical-MutSigRun1.5 | |
| HistologicalType_Classical-MutSigRun2.0 | |
| HistologicalType_Classical-MutSigRunCV | |
| HistologicalType_Classical-ParadigmPreprocess_mRNA | |
| HistologicalType_Classical-ParadigmPreprocess_RNASeq | |
| HistologicalType_Classical-Paradigm_mRNA | |
| HistologicalType_Classical-Paradigm_mRNA_And_CopyNumber | |
| HistologicalType_Classical-Paradigm_Prepare_mRNA | |
| HistologicalType_Classical-Paradigm_Prepare_mRNA_And_Copy_Number | |
| HistologicalType_Classical-Paradigm_Prepare_RNASeq | |
| HistologicalType_Classical-Paradigm_Prepare_RNASeq_And_Copy_Number | |
| HistologicalType_Classical-Paradigm_Preprocess_mRNA | |
| HistologicalType_Classical-Paradigm_Preprocess_mRNA_And_Copy_Number | |
| HistologicalType_Classical-Paradigm_Preprocess_RNASeq | |
| HistologicalType_Classical-Paradigm_Preprocess_RNASeq_And_Copy_Number | |
| HistologicalType_Classical-Paradigm_Report_Preprocess_mRNA | |
| HistologicalType_Classical-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | |
| HistologicalType_Classical-Paradigm_Report_Preprocess_RNASeq | |
| HistologicalType_Classical-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | |
| HistologicalType_Classical-Paradigm_RNASeq | |
| HistologicalType_Classical-Paradigm_RNASeq_And_Copy_Number | |
| HistologicalType_Classical-Pathway_FindEnrichedGenes | |
| HistologicalType_Classical-Pathway_Hotnet | |
| HistologicalType_Classical-Pathway_Paradigm_mRNA | |
| HistologicalType_Classical-Pathway_Paradigm_mRNA_And_Copy_Number | |
| HistologicalType_Classical-Pathway_Paradigm_RNASeq | |
| HistologicalType_Classical-Pathway_Paradigm_RNASeq_And_Copy_Number | |
| HistologicalType_Classical-ProcessCoverageForMutSig1.5 | |
| HistologicalType_Classical-ProcessCoverageForMutSig2.0 | |
| HistologicalType_Classical-RPPA_Clustering_CNMF | |
| HistologicalType_Classical-RPPA_Clustering_Consensus | |
| HistologicalType_Classical-Clinical_Pick_Tier1 | |
| HistologicalType_Classical-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB | |
| HistologicalType_Classical-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT | |
| HistologicalType_Classical-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB | |
| HistologicalType_Classical-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT | |
| HistologicalType_Classical-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB | |
| HistologicalType_Classical-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT | |
| HistologicalType_Classical-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB | |
| HistologicalType_Classical-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT | |
| HistologicalType_Classical-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB | |
| HistologicalType_Classical-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT | |
| HistologicalType_Classical-Merge_Clinical | |
| HistologicalType_Classical-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| HistologicalType_Classical-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| HistologicalType_Classical-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| HistologicalType_Classical-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg | |
| HistologicalType_Classical-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data | |
| HistologicalType_Classical-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg | |
| HistologicalType_Classical-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data | |
| HistologicalType_Classical-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg | |
| HistologicalType_Classical-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg | |
| HistologicalType_Classical-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data | |
| HistologicalType_Classical-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data | |
| HistologicalType_Classical-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data | |
| HistologicalType_Classical-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| HistologicalType_Classical-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| HistologicalType_Classical-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data | |
| HistologicalType_Classical-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data | |
| HistologicalType_Classical-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| HistologicalType_Classical-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| HistologicalType_Classical-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data | |
| HistologicalType_Classical-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data | |
| HistologicalType_Classical-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data | |
| HistologicalType_Classical-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| HistologicalType_Classical-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data | |
| HistologicalType_Classical-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data | |
| HistologicalType_Classical-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data | |
| HistologicalType_Classical-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| HistologicalType_Classical-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| HistologicalType_Classical-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| HistologicalType_Classical-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| HistologicalType_Classical-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| HistologicalType_Classical-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data | |
| HistologicalType_Classical-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data | |
| HistologicalType_Classical-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data | |
| HistologicalType_Classical-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data | |
| HistologicalType_Classical-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data | |
| HistologicalType_Classical-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| HistologicalType_Classical-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| HistologicalType_Classical-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| HistologicalType_Classical-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data | |
| HistologicalType_Classical-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data | |
| HistologicalType_Classical-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| HistologicalType_Classical-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data | |
| HistologicalType_Classical-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data | |
| HistologicalType_Classical-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data | |
| HistologicalType_Classical-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data | |
| HistologicalType_Classical-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data | |
| HistologicalType_Classical-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data | |
| HistologicalType_Classical-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data | |
| HistologicalType_Classical-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed | |
| HistologicalType_Classical-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data | |
| HistologicalType_Classical-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data | |
| HistologicalType_Classical-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data | |
| HistologicalType_Classical-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data | |
| HistologicalType_Classical-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg | |
| HistologicalType_Classical-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg | |
| HistologicalType_Classical-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg | |
| HistologicalType_Classical-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg | |
| HistologicalType_Classical-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data | |
| HistologicalType_Classical-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data | |
| HistologicalType_Classical-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| HistologicalType_Classical-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data | |
| HistologicalType_Classical-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data | |
| HistologicalType_Classical-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data | |
| HistologicalType_Classical-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| HistologicalType_Classical-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg | |
| HistologicalType_Classical-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| HistologicalType_Classical-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg | |
| HistologicalType_Classical-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data | |
| HistologicalType_Classical-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data | |
| HistologicalType_Classical-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data | |
| HistologicalType_Classical-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data | |
| HistologicalType_Classical-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data | |
| HistologicalType_Classical-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data | |
| HistologicalType_Classical-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data | |
| HistologicalType_Classical-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg | |
| HistologicalType_Classical-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg | |
| HistologicalType_Classical-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg | |
| HistologicalType_Classical-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| HistologicalType_Classical-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| HistologicalType_Classical-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| HistologicalType_Classical-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| HistologicalType_Classical-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data | |
| HistologicalType_Classical-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data | |
| HistologicalType_Classical-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data | |
| HistologicalType_Classical-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data | |
| HistologicalType_Classical-mRNAseq_Preprocess | |
| HistologicalType_Classical-Mutation_Packager_Calls | |
| HistologicalType_Classical-Mutation_Packager_Coverage | |
| HistologicalType_Classical-RPPA_AnnotateWithGene | |