CPTAC3-BRCA-TP: WXS Copy number analysis (GISTIC2)
CPTAC3-BRCA-TP: Mutation Significance Analysis (MutSig2CV)
CPTAC3-BRCA-TP: Mutation Signature Analysis (SignatureAnalyzer)
CPTAC3-BRCA-TP: Mutation Signature Analysis Reduced Hyper Mutant Effect (SignatureAnalyzer)
CPTAC3-BRCA-noHyper: Mutation Significance Analysis (MutSig2CV)
CPTAC3-BRCA-noHyper: Mutation Signature Analysis (SignatureAnalyzer)
CPTAC3-BRCA-noHyper: Mutation Signature Analysis Reduced Hyper Mutant Effect (SignatureAnalyzer)
CPTAC3-BRCA-BasalTNBC: WXS Copy number analysis (GISTIC2)
CPTAC3-BRCA-nonBasalTNBC: WXS Copy number analysis (GISTIC2)
CPTAC3-TCGA-BRCA-TP: WXS Copy number analysis (GISTIC2)
TCGA-BRCA-TP: WXS Copy number analysis (GISTIC2)