Broad GDAC cptac3__2018_10_04 Run Status : CPTAC3-LUAD-TP

Note that the links below, when activated, will require FireCloud credentials. Sample counts are given at the bottom of page.

	Pipeline	NotRun	Successful	Unsuccessful
1	Aggregate_Analysis_Features	0	1	0
2	Aggregate_Molecular_Subtype_Clusters	0	1	0
3	Clinical_Pick_Tier1	1	0	0
4	CopyNumber_Clustering_CNMF	0	0	1
5	CopyNumber_Clustering_CNMF_thresholded	0	0	1
6	CopyNumber_Gistic2_Postprocess_Focal	0	1	0
7	CopyNumber_Gistic2_wxs	0	1	0
8	Correlate_Clinical_vs_CopyNumber_Arm	0	0	1
9	Correlate_Clinical_vs_CopyNumber_Focal	0	0	1
10	Correlate_Clinical_vs_Molecular_Subtypes	0	0	1
11	Correlate_Clinical_vs_mRNA	0	0	1
12	Correlate_Clinical_vs_Mutation	1	0	0
13	Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0
14	Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0
15	Correlate_Clinical_vs_MutationRate	1	0	0
16	Correlate_molecularSubtype_vs_CopyNumber_Arm	0	1	0
17	Correlate_molecularSubtype_vs_CopyNumber_Focal	0	1	0
18	Correlate_molecularSubtype_vs_Mutation	1	0	0
19	Merge_clinical	0	0	1
20	Merge_CNV__wxs	0	1	0
21	Merge_methylation__EPIC	0	1	0
22	Merge_mRNA__geneExp__FPKM	0	1	0
23	Merge_SNV__varscan	0	1	0
24	Methylation__EPIC_Clustering_CNMF	0	0	1
25	Methylation__EPIC_Clustering_Consensus_Plus	0	0	1
26	Methylation__EPIC_Preprocess	0	1	0
27	mRNA_Preprocess_FPKM	0	1	0
28	mRNA_protein_coding_Clustering_CNMF	0	0	1
29	mRNA_protein_coding_Clustering_Consensus_Plus	0	1	0
30	Mutation_APOBEC	1	0	0
31	Mutation_Assessor	1	0	0
32	Mutation_MutSig2CV_hg19	0	0	1
33	Mutation_Signature_Analyzer	1	0	0
	Total	9	13	11

This page generated on Tue Oct 9 10:09:01 2018