Broad GDAC Analyses Status
cptac3__2018_10_04__dheiman Run for Tumor Type: CPTAC3-SAR-TP
Note that the links below, when activated, will require FireCloud credentials. Sample counts are given at the bottom of page.
Pipeline
NotRun
InProcess
Successful
Unsuccessful
1
Aggregate_Analysis_Features
1
0
0
0
2
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
3
Clinical_Pick_Tier1
1
0
0
0
4
CopyNumber_Clustering_CNMF
1
0
0
0
5
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
6
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
7
CopyNumber_Gistic2_wxs
0
0
0
1
8
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
9
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
10
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
11
Correlate_Clinical_vs_mRNA
0
0
0
1
12
Correlate_Clinical_vs_Mutation
1
0
0
0
13
Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
14
Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
15
Correlate_Clinical_vs_MutationRate
1
0
0
0
16
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
17
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
18
Correlate_molecularSubtype_vs_Mutation
1
0
0
0
19
Merge_clinical
0
0
0
1
20
Merge_CNV__wxs
0
0
0
1
21
Merge_methylation__EPIC
0
0
1
0
22
Merge_mRNA__geneExp__FPKM
0
0
0
1
23
Merge_SNV__varscan
0
0
0
1
24
Methylation__EPIC_Clustering_CNMF
0
1
0
0
25
Methylation__EPIC_Clustering_Consensus_Plus
0
0
1
0
26
Methylation__EPIC_Preprocess
0
0
1
0
27
mRNA_Preprocess_FPKM
1
0
0
0
28
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
29
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
30
Mutation_APOBEC
1
0
0
0
31
Mutation_Assessor
1
0
0
0
32
Mutation_MutSig2CV_hg19
0
0
0
1
33
Mutation_Signature_Analyzer
1
0
0
0
Total
20
1
3
9
This page generated on Thu Oct 11 10:24:11 2018