Broad GDAC Analyses Status
dev Run for Tumor Type: COAD

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAFrawMAF
COAD460458451694571534570406360154367

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures00001
2Aggregate_Molecular_Subtype_Clusters00010
3CopyNumber_Clustering_CNMF00010
4CopyNumber_Clustering_CNMF_thresholded00010
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Methylation10000
10Correlate_Clinical_vs_miR01000
11Correlate_Clinical_vs_Molecular_Subtypes00010
12Correlate_Clinical_vs_mRNA00010
13Correlate_Clinical_vs_Mutation10000
14Correlate_CopyNumber_vs_miR00010
15Correlate_CopyNumber_vs_mRNA00010
16Correlate_Methylation_vs_mRNA10000
17Correlate_molecularSubtype_vs_CopyNumber_Arm00010
18Correlate_molecularSubtype_vs_CopyNumber_Focal00010
19Methylation_Clustering_CNMF10000
20Methylation_Preprocess10000
21miR_FindDirectTargets00010
22miR_Mature_Clustering_CNMF00010
23miR_Mature_Clustering_Consensus_Plus00010
24miR_Mature_Preprocess00010
25mRNA_lincRNA_Clustering_Consensus_Plus00010
26mRNA_lincRNA_CNMF00010
27mRNA_Preprocess00010
28mRNA_protein_coding_Clustering_CNMF00010
29mRNA_protein_coding_Clustering_Consensus_Plus00010
30Mutation_APOBEC01000
31Mutation_CoOccurrence10000
32Mutation_Signature01000
33Pathway_GSEA_mRNA00010
34Aggregate_AnalysisFeatures01000
35Aggregate_Molecular_Subtype_Clusters10000
36CopyNumber_Clustering_CNMF10000
37CopyNumber_Clustering_CNMF_thresholded10000
38CopyNumber_Gistic200001
39CopyNumber_Gistic2_Postprocess_Focal10000
40Correlate_Clinical_vs_CopyNumber_Arm10000
41Correlate_Clinical_vs_CopyNumber_Focal10000
42Correlate_Clinical_vs_Methylation10000
43Correlate_Clinical_vs_miR10000
44Correlate_Clinical_vs_Molecular_Subtypes10000
45Correlate_Clinical_vs_mRNA10000
46Correlate_Clinical_vs_Mutation10000
47Correlate_CopyNumber_vs_miR10000
48Correlate_CopyNumber_vs_mRNA10000
49Correlate_Methylation_vs_mRNA10000
50Correlate_molecularSubtype_vs_CopyNumber_Arm10000
51Correlate_molecularSubtype_vs_CopyNumber_Focal10000
52Methylation_Clustering_CNMF10000
53Methylation_Preprocess10000
54miR_FindDirectTargets10000
55miR_Mature_Clustering_CNMF10000
56miR_Mature_Clustering_Consensus_Plus10000
57miR_Mature_Preprocess00010
58mRNA_lincRNA_Clustering_Consensus_Plus00001
59mRNA_lincRNA_CNMF00001
60mRNA_Preprocess00010
61mRNA_protein_coding_Clustering_CNMF00001
62mRNA_protein_coding_Clustering_Consensus_Plus00001
63Mutation_APOBEC01000
64Mutation_CoOccurrence10000
65Mutation_Signature01000
66Pathway_GSEA_mRNA10000
67Aggregate_AnalysisFeatures00001
68Aggregate_Molecular_Subtype_Clusters00010
69CopyNumber_Clustering_CNMF00010
70CopyNumber_Clustering_CNMF_thresholded00010
71CopyNumber_Gistic200010
72CopyNumber_Gistic2_Postprocess_Focal00010
73Correlate_Clinical_vs_CopyNumber_Arm00010
74Correlate_Clinical_vs_CopyNumber_Focal00010
75Correlate_Clinical_vs_Methylation10000
76Correlate_Clinical_vs_miR00010
77Correlate_Clinical_vs_Molecular_Subtypes00010
78Correlate_Clinical_vs_mRNA00010
79Correlate_Clinical_vs_Mutation10000
80Correlate_CopyNumber_vs_miR00010
81Correlate_CopyNumber_vs_mRNA00010
82Correlate_Methylation_vs_mRNA10000
83Correlate_molecularSubtype_vs_CopyNumber_Arm00010
84Correlate_molecularSubtype_vs_CopyNumber_Focal00010
85Methylation_Clustering_CNMF10000
86Methylation_Preprocess10000
87miR_FindDirectTargets00010
88miR_Mature_Clustering_CNMF00010
89miR_Mature_Clustering_Consensus_Plus00010
90miR_Mature_Preprocess00010
91mRNA_lincRNA_Clustering_Consensus_Plus00010
92mRNA_lincRNA_CNMF00010
93mRNA_Preprocess00010
94mRNA_protein_coding_Clustering_CNMF00010
95mRNA_protein_coding_Clustering_Consensus_Plus00010
96Mutation_APOBEC01000
97Mutation_CoOccurrence10000
98Mutation_Signature01000
99Pathway_GSEA_mRNA00001
100Aggregate_AnalysisFeatures01000
101Aggregate_Molecular_Subtype_Clusters10000
102CopyNumber_Clustering_CNMF10000
103CopyNumber_Clustering_CNMF_thresholded10000
104CopyNumber_Gistic200001
105CopyNumber_Gistic2_Postprocess_Focal10000
106Correlate_Clinical_vs_CopyNumber_Arm10000
107Correlate_Clinical_vs_CopyNumber_Focal10000
108Correlate_Clinical_vs_Methylation10000
109Correlate_Clinical_vs_miR10000
110Correlate_Clinical_vs_Molecular_Subtypes10000
111Correlate_Clinical_vs_mRNA10000
112Correlate_Clinical_vs_Mutation10000
113Correlate_CopyNumber_vs_miR10000
114Correlate_CopyNumber_vs_mRNA10000
115Correlate_Methylation_vs_mRNA10000
116Correlate_molecularSubtype_vs_CopyNumber_Arm10000
117Correlate_molecularSubtype_vs_CopyNumber_Focal10000
118Methylation_Clustering_CNMF10000
119Methylation_Preprocess10000
120miR_FindDirectTargets10000
121miR_Mature_Clustering_CNMF10000
122miR_Mature_Clustering_Consensus_Plus10000
123miR_Mature_Preprocess00010
124mRNA_lincRNA_Clustering_Consensus_Plus00001
125mRNA_lincRNA_CNMF00001
126mRNA_Preprocess00010
127mRNA_protein_coding_Clustering_CNMF00001
128mRNA_protein_coding_Clustering_Consensus_Plus00001
129Mutation_APOBEC01000
130Mutation_CoOccurrence10000
131Mutation_Signature01000
132Pathway_GSEA_mRNA10000
133Aggregate_AnalysisFeatures01000
134Aggregate_Molecular_Subtype_Clusters00010
135CopyNumber_Clustering_CNMF10000
136CopyNumber_Clustering_CNMF_thresholded10000
137CopyNumber_Gistic200001
138CopyNumber_Gistic2_Postprocess_Focal10000
139Correlate_Clinical_vs_CopyNumber_Arm10000
140Correlate_Clinical_vs_CopyNumber_Focal10000
141Correlate_Clinical_vs_Methylation10000
142Correlate_Clinical_vs_miR10000
143Correlate_Clinical_vs_Molecular_Subtypes00010
144Correlate_Clinical_vs_mRNA00010
145Correlate_Clinical_vs_Mutation10000
146Correlate_CopyNumber_vs_miR10000
147Correlate_CopyNumber_vs_mRNA10000
148Correlate_Methylation_vs_mRNA10000
149Correlate_molecularSubtype_vs_CopyNumber_Arm10000
150Correlate_molecularSubtype_vs_CopyNumber_Focal10000
151Methylation_Clustering_CNMF10000
152Methylation_Preprocess10000
153miR_FindDirectTargets10000
154miR_Mature_Clustering_CNMF10000
155miR_Mature_Clustering_Consensus_Plus10000
156miR_Mature_Preprocess00010
157mRNA_lincRNA_Clustering_Consensus_Plus00010
158mRNA_lincRNA_CNMF00001
159mRNA_Preprocess00010
160mRNA_protein_coding_Clustering_CNMF00010
161mRNA_protein_coding_Clustering_Consensus_Plus00010
162Mutation_APOBEC10000
163Mutation_CoOccurrence10000
164Mutation_Signature10000
165Pathway_GSEA_mRNA00001
166Aggregate_AnalysisFeatures01000
167Aggregate_Molecular_Subtype_Clusters10000
168CopyNumber_Clustering_CNMF10000
169CopyNumber_Clustering_CNMF_thresholded10000
170CopyNumber_Gistic200001
171CopyNumber_Gistic2_Postprocess_Focal10000
172Correlate_Clinical_vs_CopyNumber_Arm10000
173Correlate_Clinical_vs_CopyNumber_Focal10000
174Correlate_Clinical_vs_Methylation10000
175Correlate_Clinical_vs_miR10000
176Correlate_Clinical_vs_Molecular_Subtypes10000
177Correlate_Clinical_vs_mRNA10000
178Correlate_Clinical_vs_Mutation10000
179Correlate_CopyNumber_vs_miR10000
180Correlate_CopyNumber_vs_mRNA10000
181Correlate_Methylation_vs_mRNA10000
182Correlate_molecularSubtype_vs_CopyNumber_Arm10000
183Correlate_molecularSubtype_vs_CopyNumber_Focal10000
184Methylation_Clustering_CNMF10000
185Methylation_Preprocess10000
186miR_FindDirectTargets10000
187miR_Mature_Clustering_CNMF10000
188miR_Mature_Clustering_Consensus_Plus10000
189miR_Mature_Preprocess10000
190mRNA_lincRNA_Clustering_Consensus_Plus10000
191mRNA_lincRNA_CNMF10000
192mRNA_Preprocess10000
193mRNA_protein_coding_Clustering_CNMF10000
194mRNA_protein_coding_Clustering_Consensus_Plus10000
195Mutation_APOBEC10000
196Mutation_CoOccurrence10000
197Mutation_Signature10000
198Pathway_GSEA_mRNA10000
199Aggregate_AnalysisFeatures01000
200Aggregate_Molecular_Subtype_Clusters10000
201CopyNumber_Clustering_CNMF10000
202CopyNumber_Clustering_CNMF_thresholded10000
203CopyNumber_Gistic201000
204CopyNumber_Gistic2_Postprocess_Focal10000
205Correlate_Clinical_vs_CopyNumber_Arm10000
206Correlate_Clinical_vs_CopyNumber_Focal10000
207Correlate_Clinical_vs_Methylation10000
208Correlate_Clinical_vs_miR10000
209Correlate_Clinical_vs_Molecular_Subtypes10000
210Correlate_Clinical_vs_mRNA10000
211Correlate_Clinical_vs_Mutation10000
212Correlate_CopyNumber_vs_miR10000
213Correlate_CopyNumber_vs_mRNA10000
214Correlate_Methylation_vs_mRNA10000
215Correlate_molecularSubtype_vs_CopyNumber_Arm10000
216Correlate_molecularSubtype_vs_CopyNumber_Focal10000
217Methylation_Clustering_CNMF10000
218Methylation_Preprocess10000
219miR_FindDirectTargets10000
220miR_Mature_Clustering_CNMF10000
221miR_Mature_Clustering_Consensus_Plus10000
222miR_Mature_Preprocess01000
223mRNA_lincRNA_Clustering_Consensus_Plus10000
224mRNA_lincRNA_CNMF10000
225mRNA_Preprocess01000
226mRNA_protein_coding_Clustering_CNMF10000
227mRNA_protein_coding_Clustering_Consensus_Plus10000
228Mutation_APOBEC01000
229Mutation_CoOccurrence10000
230Mutation_Signature01000
231Pathway_GSEA_mRNA10000
232Aggregate_AnalysisFeatures01000
233Aggregate_Gene_Status10000
234Aggregate_Molecular_Subtype_Clusters01000
235Append_CustomClinical01000
236CoMut2.010000
237CoMut2CV10000
238CoMutCV10000
239CopyNumber_Clustering_CNMF10000
240CopyNumber_Clustering_CNMF_thresholded10000
241CopyNumber_Gistic201000
242CopyNumber_Gistic2_Postprocess_Focal10000
243CopyNumberLowPass_Gistic201000
244Correlate_Clinical_vs_CopyNumber_Arm10000
245Correlate_Clinical_vs_CopyNumber_Focal10000
246Correlate_Clinical_vs_Methylation10000
247Correlate_Clinical_vs_miR10000
248Correlate_Clinical_vs_miRseq10000
249Correlate_Clinical_vs_Molecular_Subtypes10000
250Correlate_Clinical_vs_mRNA10000
251Correlate_Clinical_vs_mRNAseq10000
252Correlate_Clinical_vs_Mutation10000
253Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
254Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
255Correlate_Clinical_vs_MutationRate10000
256Correlate_Clinical_vs_RPPA10000
257Correlate_CopyNumber_vs_miR10000
258Correlate_CopyNumber_vs_mRNA10000
259Correlate_CopyNumber_vs_mRNAseq10000
260Correlate_Methylation_vs_mRNA01000
261Correlate_molecularSubtype_vs_CopyNumber_Arm10000
262Correlate_molecularSubtype_vs_CopyNumber_Focal10000
263Correlate_molecularSubtype_vs_Mutation10000
264Correlate_mRNAseq_vs_Mutation_APOBEC10000
265GenerateStickFigures2.010000
266GenerateStickFigures2CV10000
267GenerateStickFiguresCV10000
268iClusterPlus10000
269LegoPlotter2.010000
270LegoPlotter2CV10000
271LegoPlotterCV10000
272Methylation_Clustering_CNMF01000
273miR_Clustering_CNMF10000
274miR_Clustering_Consensus_Plus10000
275miR_FindDirectTargets10000
276miRseq_Clustering_CNMF01000
277miRseq_Clustering_Consensus_Plus01000
278miRseq_FindDirectTargets01000
279miRseq_Mature_Clustering_CNMF01000
280miRseq_Mature_Clustering_Consensus_Plus01000
281mRNA_Clustering_CNMF01000
282mRNA_Clustering_Consensus_Plus01000
283mRNAseq_Clustering_CNMF01000
284mRNAseq_Clustering_Consensus_Plus00010
285Mutation_APOBEC10000
286Mutation_Assessor10000
287Mutation_CHASM10000
288Mutation_CoOccurrence10000
289Mutation_CoOccurrence_Custom10000
290MutSigNozzleReport2.010000
291MutSigNozzleReport2CV10000
292MutSigNozzleReportCV10000
293MutSigPreprocess2.010000
294MutSigRun2.010000
295MutSigRun2CV10000
296MutSigRunCV10000
297Paradigm_mRNA10000
298Paradigm_mRNA_And_CopyNumber10000
299Paradigm_Prepare_mRNA10000
300Paradigm_Prepare_mRNA_And_Copy_Number10000
301Paradigm_Prepare_RNASeq10000
302Paradigm_Prepare_RNASeq_And_Copy_Number10000
303ParadigmPreprocess_mRNA01000
304Paradigm_Preprocess_mRNA10000
305Paradigm_Preprocess_mRNA_And_Copy_Number10000
306ParadigmPreprocess_RNASeq01000
307Paradigm_Preprocess_RNASeq10000
308Paradigm_Preprocess_RNASeq_And_Copy_Number10000
309Paradigm_Report_Preprocess_mRNA10000
310Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
311Paradigm_Report_Preprocess_RNASeq10000
312Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
313Paradigm_RNASeq10000
314Paradigm_RNASeq_And_Copy_Number10000
315Pathway_FindEnrichedGenes10000
316Pathway_GSEA_mRNAseq10000
317Pathway_Hotnet10000
318Pathway_Overlaps_MSigDB_MutSig2CV10000
319Pathway_Paradigm_mRNA10000
320Pathway_Paradigm_mRNA_And_Copy_Number10000
321Pathway_Paradigm_RNASeq10000
322Pathway_Paradigm_RNASeq_And_Copy_Number10000
323ProcessCoverageForMutSig2.010000
324RPPA_Clustering_CNMF01000
325RPPA_Clustering_Consensus_Plus01000
326TR-Aggregate_AnalysisFeatures01000
327TR-Aggregate_Gene_Status10000
328TR-Aggregate_Molecular_Subtype_Clusters10000
329TR-Append_CustomClinical10000
330TR-CoMut2.010000
331TR-CoMut2CV10000
332TR-CoMutCV10000
333TR-CopyNumber_Clustering_CNMF10000
334TR-CopyNumber_Clustering_CNMF_thresholded10000
335TR-CopyNumber_Gistic201000
336TR-CopyNumber_Gistic2_Postprocess_Focal10000
337TR-CopyNumberLowPass_Gistic210000
338TR-Correlate_Clinical_vs_CopyNumber_Arm10000
339TR-Correlate_Clinical_vs_CopyNumber_Focal10000
340TR-Correlate_Clinical_vs_Methylation10000
341TR-Correlate_Clinical_vs_miR10000
342TR-Correlate_Clinical_vs_miRseq10000
343TR-Correlate_Clinical_vs_Molecular_Subtypes10000
344TR-Correlate_Clinical_vs_mRNA10000
345TR-Correlate_Clinical_vs_mRNAseq10000
346TR-Correlate_Clinical_vs_Mutation10000
347TR-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
348TR-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
349TR-Correlate_Clinical_vs_MutationRate10000
350TR-Correlate_Clinical_vs_RPPA10000
351TR-Correlate_CopyNumber_vs_miR10000
352TR-Correlate_CopyNumber_vs_mRNA10000
353TR-Correlate_CopyNumber_vs_mRNAseq10000
354TR-Correlate_Methylation_vs_mRNA10000
355TR-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
356TR-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
357TR-Correlate_molecularSubtype_vs_Mutation10000
358TR-Correlate_mRNAseq_vs_Mutation_APOBEC10000
359TR-GenerateStickFigures2.010000
360TR-GenerateStickFigures2CV10000
361TR-GenerateStickFiguresCV10000
362TR-iClusterPlus10000
363TR-LegoPlotter2.010000
364TR-LegoPlotter2CV10000
365TR-LegoPlotterCV10000
366TR-Methylation_Clustering_CNMF01000
367TR-miR_Clustering_CNMF10000
368TR-miR_Clustering_Consensus_Plus10000
369TR-miR_FindDirectTargets10000
370TR-miRseq_Clustering_CNMF10000
371TR-miRseq_Clustering_Consensus_Plus10000
372TR-miRseq_FindDirectTargets10000
373TR-miRseq_Mature_Clustering_CNMF10000
374TR-miRseq_Mature_Clustering_Consensus_Plus10000
375TR-mRNA_Clustering_CNMF10000
376TR-mRNA_Clustering_Consensus_Plus10000
377TR-mRNAseq_Clustering_CNMF10000
378TR-mRNAseq_Clustering_Consensus_Plus10000
379TR-Mutation_APOBEC10000
380TR-Mutation_Assessor10000
381TR-Mutation_CHASM10000
382TR-Mutation_CoOccurrence10000
383TR-Mutation_CoOccurrence_Custom10000
384TR-MutSigNozzleReport2.010000
385TR-MutSigNozzleReport2CV10000
386TR-MutSigNozzleReportCV10000
387TR-MutSigPreprocess2.010000
388TR-MutSigRun2.010000
389TR-MutSigRun2CV10000
390TR-MutSigRunCV10000
391TR-Paradigm_mRNA10000
392TR-Paradigm_mRNA_And_CopyNumber10000
393TR-Paradigm_Prepare_mRNA10000
394TR-Paradigm_Prepare_mRNA_And_Copy_Number10000
395TR-Paradigm_Prepare_RNASeq10000
396TR-Paradigm_Prepare_RNASeq_And_Copy_Number10000
397TR-Paradigm_Preprocess_mRNA10000
398TR-ParadigmPreprocess_mRNA10000
399TR-Paradigm_Preprocess_mRNA_And_Copy_Number10000
400TR-ParadigmPreprocess_RNASeq01000
401TR-Paradigm_Preprocess_RNASeq10000
402TR-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
403TR-Paradigm_Report_Preprocess_mRNA10000
404TR-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
405TR-Paradigm_Report_Preprocess_RNASeq10000
406TR-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
407TR-Paradigm_RNASeq10000
408TR-Paradigm_RNASeq_And_Copy_Number10000
409TR-Pathway_FindEnrichedGenes10000
410TR-Pathway_GSEA_mRNAseq10000
411TR-Pathway_Hotnet10000
412TR-Pathway_Overlaps_MSigDB_MutSig2CV10000
413TR-Pathway_Paradigm_mRNA10000
414TR-Pathway_Paradigm_mRNA_And_Copy_Number10000
415TR-Pathway_Paradigm_RNASeq10000
416TR-Pathway_Paradigm_RNASeq_And_Copy_Number10000
417TR-ProcessCoverageForMutSig2.010000
418TR-RPPA_Clustering_CNMF10000
419TR-RPPA_Clustering_Consensus_Plus10000
420TP-Aggregate_AnalysisFeatures01000
421TP-Aggregate_Gene_Status10000
422TP-Aggregate_Molecular_Subtype_Clusters01000
423TP-Append_CustomClinical01000
424TP-CoMut2.010000
425TP-CoMut2CV10000
426TP-CoMutCV10000
427TP-CopyNumber_Clustering_CNMF10000
428TP-CopyNumber_Clustering_CNMF_thresholded10000
429TP-CopyNumber_Gistic201000
430TP-CopyNumber_Gistic2_Postprocess_Focal10000
431TP-CopyNumberLowPass_Gistic201000
432TP-Correlate_Clinical_vs_CopyNumber_Arm10000
433TP-Correlate_Clinical_vs_CopyNumber_Focal10000
434TP-Correlate_Clinical_vs_Methylation10000
435TP-Correlate_Clinical_vs_miR10000
436TP-Correlate_Clinical_vs_miRseq10000
437TP-Correlate_Clinical_vs_Molecular_Subtypes10000
438TP-Correlate_Clinical_vs_mRNA10000
439TP-Correlate_Clinical_vs_mRNAseq10000
440TP-Correlate_Clinical_vs_Mutation10000
441TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
442TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
443TP-Correlate_Clinical_vs_MutationRate10000
444TP-Correlate_Clinical_vs_RPPA10000
445TP-Correlate_CopyNumber_vs_miR10000
446TP-Correlate_CopyNumber_vs_mRNA10000
447TP-Correlate_CopyNumber_vs_mRNAseq10000
448TP-Correlate_Methylation_vs_mRNA01000
449TP-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
450TP-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
451TP-Correlate_molecularSubtype_vs_Mutation10000
452TP-Correlate_mRNAseq_vs_Mutation_APOBEC10000
453TP-GenerateStickFigures2.010000
454TP-GenerateStickFigures2CV10000
455TP-GenerateStickFiguresCV10000
456TP-iClusterPlus10000
457TP-LegoPlotter2.010000
458TP-LegoPlotter2CV10000
459TP-LegoPlotterCV10000
460TP-Methylation_Clustering_CNMF01000
461TP-miR_Clustering_CNMF10000
462TP-miR_Clustering_Consensus_Plus10000
463TP-miR_FindDirectTargets10000
464TP-miRseq_Clustering_CNMF01000
465TP-miRseq_Clustering_Consensus_Plus01000
466TP-miRseq_FindDirectTargets01000
467TP-miRseq_Mature_Clustering_CNMF01000
468TP-miRseq_Mature_Clustering_Consensus_Plus01000
469TP-mRNA_Clustering_CNMF01000
470TP-mRNA_Clustering_Consensus_Plus01000
471TP-mRNAseq_Clustering_CNMF01000
472TP-mRNAseq_Clustering_Consensus_Plus00010
473TP-Mutation_APOBEC10000
474TP-Mutation_Assessor10000
475TP-Mutation_CHASM10000
476TP-Mutation_CoOccurrence10000
477TP-Mutation_CoOccurrence_Custom10000
478TP-MutSigNozzleReport2.010000
479TP-MutSigNozzleReport2CV10000
480TP-MutSigNozzleReportCV10000
481TP-MutSigPreprocess2.001000
482TP-MutSigRun2.010000
483TP-MutSigRun2CV01000
484TP-MutSigRunCV01000
485TP-Paradigm_mRNA10000
486TP-Paradigm_mRNA_And_CopyNumber10000
487TP-Paradigm_Prepare_mRNA10000
488TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
489TP-Paradigm_Prepare_RNASeq10000
490TP-Paradigm_Prepare_RNASeq_And_Copy_Number10000
491TP-ParadigmPreprocess_mRNA01000
492TP-Paradigm_Preprocess_mRNA10000
493TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
494TP-ParadigmPreprocess_RNASeq01000
495TP-Paradigm_Preprocess_RNASeq10000
496TP-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
497TP-Paradigm_Report_Preprocess_mRNA10000
498TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
499TP-Paradigm_Report_Preprocess_RNASeq10000
500TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
501TP-Paradigm_RNASeq10000
502TP-Paradigm_RNASeq_And_Copy_Number10000
503TP-Pathway_FindEnrichedGenes10000
504TP-Pathway_GSEA_mRNAseq10000
505TP-Pathway_Hotnet10000
506TP-Pathway_Overlaps_MSigDB_MutSig2CV10000
507TP-Pathway_Paradigm_mRNA10000
508TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
509TP-Pathway_Paradigm_RNASeq10000
510TP-Pathway_Paradigm_RNASeq_And_Copy_Number10000
511TP-ProcessCoverageForMutSig2.010000
512TP-RPPA_Clustering_CNMF01000
513TP-RPPA_Clustering_Consensus_Plus01000
514TM-Aggregate_AnalysisFeatures01000
515TM-Aggregate_Gene_Status10000
516TM-Aggregate_Molecular_Subtype_Clusters10000
517TM-Append_CustomClinical10000
518TM-CoMut2.010000
519TM-CoMut2CV10000
520TM-CoMutCV10000
521TM-CopyNumber_Clustering_CNMF10000
522TM-CopyNumber_Clustering_CNMF_thresholded10000
523TM-CopyNumber_Gistic201000
524TM-CopyNumber_Gistic2_Postprocess_Focal10000
525TM-CopyNumberLowPass_Gistic210000
526TM-Correlate_Clinical_vs_CopyNumber_Arm10000
527TM-Correlate_Clinical_vs_CopyNumber_Focal10000
528TM-Correlate_Clinical_vs_Methylation10000
529TM-Correlate_Clinical_vs_miR10000
530TM-Correlate_Clinical_vs_miRseq10000
531TM-Correlate_Clinical_vs_Molecular_Subtypes10000
532TM-Correlate_Clinical_vs_mRNA10000
533TM-Correlate_Clinical_vs_mRNAseq10000
534TM-Correlate_Clinical_vs_Mutation10000
535TM-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
536TM-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
537TM-Correlate_Clinical_vs_MutationRate10000
538TM-Correlate_Clinical_vs_RPPA10000
539TM-Correlate_CopyNumber_vs_miR10000
540TM-Correlate_CopyNumber_vs_mRNA10000
541TM-Correlate_CopyNumber_vs_mRNAseq10000
542TM-Correlate_Methylation_vs_mRNA10000
543TM-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
544TM-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
545TM-Correlate_molecularSubtype_vs_Mutation10000
546TM-Correlate_mRNAseq_vs_Mutation_APOBEC10000
547TM-GenerateStickFigures2.010000
548TM-GenerateStickFigures2CV10000
549TM-GenerateStickFiguresCV10000
550TM-iClusterPlus10000
551TM-LegoPlotter2.010000
552TM-LegoPlotter2CV10000
553TM-LegoPlotterCV10000
554TM-Methylation_Clustering_CNMF01000
555TM-miR_Clustering_CNMF10000
556TM-miR_Clustering_Consensus_Plus10000
557TM-miR_FindDirectTargets10000
558TM-miRseq_Clustering_CNMF10000
559TM-miRseq_Clustering_Consensus_Plus10000
560TM-miRseq_FindDirectTargets10000
561TM-miRseq_Mature_Clustering_CNMF10000
562TM-miRseq_Mature_Clustering_Consensus_Plus10000
563TM-mRNA_Clustering_CNMF10000
564TM-mRNA_Clustering_Consensus_Plus10000
565TM-mRNAseq_Clustering_CNMF10000
566TM-mRNAseq_Clustering_Consensus_Plus10000
567TM-Mutation_APOBEC10000
568TM-Mutation_Assessor10000
569TM-Mutation_CHASM10000
570TM-Mutation_CoOccurrence10000
571TM-Mutation_CoOccurrence_Custom10000
572TM-MutSigNozzleReport2.010000
573TM-MutSigNozzleReport2CV10000
574TM-MutSigNozzleReportCV10000
575TM-MutSigPreprocess2.010000
576TM-MutSigRun2.010000
577TM-MutSigRun2CV10000
578TM-MutSigRunCV10000
579TM-Paradigm_mRNA10000
580TM-Paradigm_mRNA_And_CopyNumber10000
581TM-Paradigm_Prepare_mRNA10000
582TM-Paradigm_Prepare_mRNA_And_Copy_Number10000
583TM-Paradigm_Prepare_RNASeq10000
584TM-Paradigm_Prepare_RNASeq_And_Copy_Number10000
585TM-Paradigm_Preprocess_mRNA10000
586TM-ParadigmPreprocess_mRNA10000
587TM-Paradigm_Preprocess_mRNA_And_Copy_Number10000
588TM-ParadigmPreprocess_RNASeq01000
589TM-Paradigm_Preprocess_RNASeq10000
590TM-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
591TM-Paradigm_Report_Preprocess_mRNA10000
592TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
593TM-Paradigm_Report_Preprocess_RNASeq10000
594TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
595TM-Paradigm_RNASeq10000
596TM-Paradigm_RNASeq_And_Copy_Number10000
597TM-Pathway_FindEnrichedGenes10000
598TM-Pathway_GSEA_mRNAseq10000
599TM-Pathway_Hotnet10000
600TM-Pathway_Overlaps_MSigDB_MutSig2CV10000
601TM-Pathway_Paradigm_mRNA10000
602TM-Pathway_Paradigm_mRNA_And_Copy_Number10000
603TM-Pathway_Paradigm_RNASeq10000
604TM-Pathway_Paradigm_RNASeq_And_Copy_Number10000
605TM-ProcessCoverageForMutSig2.010000
606TM-RPPA_Clustering_CNMF10000
607TM-RPPA_Clustering_Consensus_Plus10000
608NT-Aggregate_AnalysisFeatures01000
609NT-Aggregate_Gene_Status10000
610NT-Aggregate_Molecular_Subtype_Clusters01000
611NT-Append_CustomClinical01000
612NT-CoMut2.010000
613NT-CoMut2CV10000
614NT-CoMutCV10000
615NT-CopyNumber_Clustering_CNMF10000
616NT-CopyNumber_Clustering_CNMF_thresholded10000
617NT-CopyNumber_Gistic201000
618NT-CopyNumber_Gistic2_Postprocess_Focal10000
619NT-CopyNumberLowPass_Gistic201000
620NT-Correlate_Clinical_vs_CopyNumber_Arm10000
621NT-Correlate_Clinical_vs_CopyNumber_Focal10000
622NT-Correlate_Clinical_vs_Methylation10000
623NT-Correlate_Clinical_vs_miR10000
624NT-Correlate_Clinical_vs_miRseq10000
625NT-Correlate_Clinical_vs_Molecular_Subtypes10000
626NT-Correlate_Clinical_vs_mRNA10000
627NT-Correlate_Clinical_vs_mRNAseq10000
628NT-Correlate_Clinical_vs_Mutation10000
629NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
630NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
631NT-Correlate_Clinical_vs_MutationRate10000
632NT-Correlate_Clinical_vs_RPPA10000
633NT-Correlate_CopyNumber_vs_miR10000
634NT-Correlate_CopyNumber_vs_mRNA10000
635NT-Correlate_CopyNumber_vs_mRNAseq10000
636NT-Correlate_Methylation_vs_mRNA01000
637NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
638NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
639NT-Correlate_molecularSubtype_vs_Mutation10000
640NT-Correlate_mRNAseq_vs_Mutation_APOBEC10000
641NT-GenerateStickFigures2.010000
642NT-GenerateStickFigures2CV10000
643NT-GenerateStickFiguresCV10000
644NT-iClusterPlus10000
645NT-LegoPlotter2.010000
646NT-LegoPlotter2CV10000
647NT-LegoPlotterCV10000
648NT-Methylation_Clustering_CNMF01000
649NT-miR_Clustering_CNMF10000
650NT-miR_Clustering_Consensus_Plus10000
651NT-miR_FindDirectTargets10000
652NT-miRseq_Clustering_CNMF10000
653NT-miRseq_Clustering_Consensus_Plus10000
654NT-miRseq_FindDirectTargets10000
655NT-miRseq_Mature_Clustering_CNMF10000
656NT-miRseq_Mature_Clustering_Consensus_Plus10000
657NT-mRNA_Clustering_CNMF10000
658NT-mRNA_Clustering_Consensus_Plus10000
659NT-mRNAseq_Clustering_CNMF01000
660NT-mRNAseq_Clustering_Consensus_Plus00010
661NT-Mutation_APOBEC10000
662NT-Mutation_Assessor10000
663NT-Mutation_CHASM10000
664NT-Mutation_CoOccurrence10000
665NT-Mutation_CoOccurrence_Custom10000
666NT-MutSigNozzleReport2.010000
667NT-MutSigNozzleReport2CV10000
668NT-MutSigNozzleReportCV10000
669NT-MutSigPreprocess2.010000
670NT-MutSigRun2.010000
671NT-MutSigRun2CV10000
672NT-MutSigRunCV10000
673NT-Paradigm_mRNA10000
674NT-Paradigm_mRNA_And_CopyNumber10000
675NT-Paradigm_Prepare_mRNA10000
676NT-Paradigm_Prepare_mRNA_And_Copy_Number10000
677NT-Paradigm_Prepare_RNASeq10000
678NT-Paradigm_Prepare_RNASeq_And_Copy_Number10000
679NT-ParadigmPreprocess_mRNA01000
680NT-Paradigm_Preprocess_mRNA10000
681NT-Paradigm_Preprocess_mRNA_And_Copy_Number10000
682NT-ParadigmPreprocess_RNASeq01000
683NT-Paradigm_Preprocess_RNASeq10000
684NT-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
685NT-Paradigm_Report_Preprocess_mRNA10000
686NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
687NT-Paradigm_Report_Preprocess_RNASeq10000
688NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
689NT-Paradigm_RNASeq10000
690NT-Paradigm_RNASeq_And_Copy_Number10000
691NT-Pathway_FindEnrichedGenes10000
692NT-Pathway_GSEA_mRNAseq10000
693NT-Pathway_Hotnet10000
694NT-Pathway_Overlaps_MSigDB_MutSig2CV10000
695NT-Pathway_Paradigm_mRNA10000
696NT-Pathway_Paradigm_mRNA_And_Copy_Number10000
697NT-Pathway_Paradigm_RNASeq10000
698NT-Pathway_Paradigm_RNASeq_And_Copy_Number10000
699NT-ProcessCoverageForMutSig2.010000
700NT-RPPA_Clustering_CNMF10000
701NT-RPPA_Clustering_Consensus_Plus10000
702NB-Aggregate_AnalysisFeatures01000
703NB-Aggregate_Gene_Status10000
704NB-Aggregate_Molecular_Subtype_Clusters10000
705NB-Append_CustomClinical01000
706NB-CoMut2.010000
707NB-CoMut2CV10000
708NB-CoMutCV10000
709NB-CopyNumber_Clustering_CNMF10000
710NB-CopyNumber_Clustering_CNMF_thresholded10000
711NB-CopyNumber_Gistic201000
712NB-CopyNumber_Gistic2_Postprocess_Focal10000
713NB-CopyNumberLowPass_Gistic201000
714NB-Correlate_Clinical_vs_CopyNumber_Arm10000
715NB-Correlate_Clinical_vs_CopyNumber_Focal10000
716NB-Correlate_Clinical_vs_Methylation10000
717NB-Correlate_Clinical_vs_miR10000
718NB-Correlate_Clinical_vs_miRseq10000
719NB-Correlate_Clinical_vs_Molecular_Subtypes10000
720NB-Correlate_Clinical_vs_mRNA10000
721NB-Correlate_Clinical_vs_mRNAseq10000
722NB-Correlate_Clinical_vs_Mutation10000
723NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
724NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
725NB-Correlate_Clinical_vs_MutationRate10000
726NB-Correlate_Clinical_vs_RPPA10000
727NB-Correlate_CopyNumber_vs_miR10000
728NB-Correlate_CopyNumber_vs_mRNA10000
729NB-Correlate_CopyNumber_vs_mRNAseq10000
730NB-Correlate_Methylation_vs_mRNA10000
731NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
732NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
733NB-Correlate_molecularSubtype_vs_Mutation10000
734NB-Correlate_mRNAseq_vs_Mutation_APOBEC10000
735NB-GenerateStickFigures2.010000
736NB-GenerateStickFigures2CV10000
737NB-GenerateStickFiguresCV10000
738NB-iClusterPlus10000
739NB-LegoPlotter2.010000
740NB-LegoPlotter2CV10000
741NB-LegoPlotterCV10000
742NB-Methylation_Clustering_CNMF10000
743NB-miR_Clustering_CNMF10000
744NB-miR_Clustering_Consensus_Plus10000
745NB-miR_FindDirectTargets10000
746NB-miRseq_Clustering_CNMF10000
747NB-miRseq_Clustering_Consensus_Plus10000
748NB-miRseq_FindDirectTargets10000
749NB-miRseq_Mature_Clustering_CNMF10000
750NB-miRseq_Mature_Clustering_Consensus_Plus10000
751NB-mRNA_Clustering_CNMF10000
752NB-mRNA_Clustering_Consensus_Plus10000
753NB-mRNAseq_Clustering_CNMF10000
754NB-mRNAseq_Clustering_Consensus_Plus10000
755NB-Mutation_APOBEC10000
756NB-Mutation_Assessor10000
757NB-Mutation_CHASM10000
758NB-Mutation_CoOccurrence10000
759NB-Mutation_CoOccurrence_Custom10000
760NB-MutSigNozzleReport2.010000
761NB-MutSigNozzleReport2CV10000
762NB-MutSigNozzleReportCV10000
763NB-MutSigPreprocess2.010000
764NB-MutSigRun2.010000
765NB-MutSigRun2CV10000
766NB-MutSigRunCV10000
767NB-Paradigm_mRNA10000
768NB-Paradigm_mRNA_And_CopyNumber10000
769NB-Paradigm_Prepare_mRNA10000
770NB-Paradigm_Prepare_mRNA_And_Copy_Number10000
771NB-Paradigm_Prepare_RNASeq10000
772NB-Paradigm_Prepare_RNASeq_And_Copy_Number10000
773NB-Paradigm_Preprocess_mRNA10000
774NB-ParadigmPreprocess_mRNA10000
775NB-Paradigm_Preprocess_mRNA_And_Copy_Number10000
776NB-Paradigm_Preprocess_RNASeq10000
777NB-ParadigmPreprocess_RNASeq10000
778NB-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
779NB-Paradigm_Report_Preprocess_mRNA10000
780NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
781NB-Paradigm_Report_Preprocess_RNASeq10000
782NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
783NB-Paradigm_RNASeq10000
784NB-Paradigm_RNASeq_And_Copy_Number10000
785NB-Pathway_FindEnrichedGenes10000
786NB-Pathway_GSEA_mRNAseq10000
787NB-Pathway_Hotnet10000
788NB-Pathway_Overlaps_MSigDB_MutSig2CV10000
789NB-Pathway_Paradigm_mRNA10000
790NB-Pathway_Paradigm_mRNA_And_Copy_Number10000
791NB-Pathway_Paradigm_RNASeq10000
792NB-Pathway_Paradigm_RNASeq_And_Copy_Number10000
793NB-ProcessCoverageForMutSig2.010000
794NB-RPPA_Clustering_CNMF10000
795NB-RPPA_Clustering_Consensus_Plus10000
796FFPE-Aggregate_AnalysisFeatures01000
797FFPE-Aggregate_Gene_Status10000
798FFPE-Aggregate_Molecular_Subtype_Clusters10000
799FFPE-Append_CustomClinical10000
800FFPE-CoMut2.010000
801FFPE-CoMut2CV10000
802FFPE-CoMutCV10000
803FFPE-CopyNumber_Clustering_CNMF10000
804FFPE-CopyNumber_Clustering_CNMF_thresholded10000
805FFPE-CopyNumber_Gistic201000
806FFPE-CopyNumber_Gistic2_Postprocess_Focal10000
807FFPE-CopyNumberLowPass_Gistic210000
808FFPE-Correlate_Clinical_vs_CopyNumber_Arm10000
809FFPE-Correlate_Clinical_vs_CopyNumber_Focal10000
810FFPE-Correlate_Clinical_vs_Methylation10000
811FFPE-Correlate_Clinical_vs_miR10000
812FFPE-Correlate_Clinical_vs_miRseq10000
813FFPE-Correlate_Clinical_vs_Molecular_Subtypes10000
814FFPE-Correlate_Clinical_vs_mRNA10000
815FFPE-Correlate_Clinical_vs_mRNAseq10000
816FFPE-Correlate_Clinical_vs_Mutation10000
817FFPE-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
818FFPE-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
819FFPE-Correlate_Clinical_vs_MutationRate10000
820FFPE-Correlate_Clinical_vs_RPPA10000
821FFPE-Correlate_CopyNumber_vs_miR10000
822FFPE-Correlate_CopyNumber_vs_mRNA10000
823FFPE-Correlate_CopyNumber_vs_mRNAseq10000
824FFPE-Correlate_Methylation_vs_mRNA10000
825FFPE-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
826FFPE-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
827FFPE-Correlate_molecularSubtype_vs_Mutation10000
828FFPE-Correlate_mRNAseq_vs_Mutation_APOBEC10000
829FFPE-GenerateStickFigures2.010000
830FFPE-GenerateStickFigures2CV10000
831FFPE-GenerateStickFiguresCV10000
832FFPE-iClusterPlus10000
833FFPE-LegoPlotter2.010000
834FFPE-LegoPlotter2CV10000
835FFPE-LegoPlotterCV10000
836FFPE-Methylation_Clustering_CNMF01000
837FFPE-miR_Clustering_CNMF10000
838FFPE-miR_Clustering_Consensus_Plus10000
839FFPE-miR_FindDirectTargets10000
840FFPE-miRseq_Clustering_CNMF10000
841FFPE-miRseq_Clustering_Consensus_Plus10000
842FFPE-miRseq_FindDirectTargets10000
843FFPE-miRseq_Mature_Clustering_CNMF10000
844FFPE-miRseq_Mature_Clustering_Consensus_Plus10000
845FFPE-mRNA_Clustering_CNMF10000
846FFPE-mRNA_Clustering_Consensus_Plus10000
847FFPE-mRNAseq_Clustering_CNMF10000
848FFPE-mRNAseq_Clustering_Consensus_Plus10000
849FFPE-Mutation_APOBEC10000
850FFPE-Mutation_Assessor10000
851FFPE-Mutation_CHASM10000
852FFPE-Mutation_CoOccurrence10000
853FFPE-Mutation_CoOccurrence_Custom10000
854FFPE-MutSigNozzleReport2.010000
855FFPE-MutSigNozzleReport2CV10000
856FFPE-MutSigNozzleReportCV10000
857FFPE-MutSigPreprocess2.010000
858FFPE-MutSigRun2.010000
859FFPE-MutSigRun2CV10000
860FFPE-MutSigRunCV10000
861FFPE-Paradigm_mRNA10000
862FFPE-Paradigm_mRNA_And_CopyNumber10000
863FFPE-Paradigm_Prepare_mRNA10000
864FFPE-Paradigm_Prepare_mRNA_And_Copy_Number10000
865FFPE-Paradigm_Prepare_RNASeq10000
866FFPE-Paradigm_Prepare_RNASeq_And_Copy_Number10000
867FFPE-Paradigm_Preprocess_mRNA10000
868FFPE-ParadigmPreprocess_mRNA10000
869FFPE-Paradigm_Preprocess_mRNA_And_Copy_Number10000
870FFPE-Paradigm_Preprocess_RNASeq10000
871FFPE-ParadigmPreprocess_RNASeq10000
872FFPE-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
873FFPE-Paradigm_Report_Preprocess_mRNA10000
874FFPE-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
875FFPE-Paradigm_Report_Preprocess_RNASeq10000
876FFPE-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
877FFPE-Paradigm_RNASeq10000
878FFPE-Paradigm_RNASeq_And_Copy_Number10000
879FFPE-Pathway_FindEnrichedGenes10000
880FFPE-Pathway_GSEA_mRNAseq10000
881FFPE-Pathway_Hotnet10000
882FFPE-Pathway_Overlaps_MSigDB_MutSig2CV10000
883FFPE-Pathway_Paradigm_mRNA10000
884FFPE-Pathway_Paradigm_mRNA_And_Copy_Number10000
885FFPE-Pathway_Paradigm_RNASeq10000
886FFPE-Pathway_Paradigm_RNASeq_And_Copy_Number10000
887FFPE-ProcessCoverageForMutSig2.010000
888FFPE-RPPA_Clustering_CNMF10000
889FFPE-RPPA_Clustering_Consensus_Plus10000
Total7268506117

This table generated on Thu Jan 26 11:03:43 2017