Broad GDAC dev Run Status : COADREAD

Cohort	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNASeq	miR	miRSeq	RPPA	MAF	rawMAF
COADREAD	631	629	616	104	622	222	623	0	549	491	223	489

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Runnable	Successful	Unsuccessful
1	Aggregate_AnalysisFeatures	0	0	0	1
2	Aggregate_Molecular_Subtype_Clusters	0	0	1	0
3	CopyNumber_Clustering_CNMF	0	0	1	0
4	CopyNumber_Clustering_CNMF_thresholded	0	0	1	0
5	CopyNumber_Gistic2	0	0	1	0
6	CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
7	Correlate_Clinical_vs_CopyNumber_Arm	0	0	1	0
8	Correlate_Clinical_vs_CopyNumber_Focal	0	0	1	0
9	Correlate_Clinical_vs_Methylation	1	0	0	0
10	Correlate_Clinical_vs_miR	0	1	0	0
11	Correlate_Clinical_vs_Molecular_Subtypes	0	0	1	0
12	Correlate_Clinical_vs_mRNA	0	0	1	0
13	Correlate_Clinical_vs_Mutation	1	0	0	0
14	Correlate_CopyNumber_vs_miR	0	0	1	0
15	Correlate_CopyNumber_vs_mRNA	0	1	0	0
16	Correlate_Methylation_vs_mRNA	1	0	0	0
17	Correlate_molecularSubtype_vs_CopyNumber_Arm	0	0	1	0
18	Correlate_molecularSubtype_vs_CopyNumber_Focal	0	0	1	0
19	Methylation_Clustering_CNMF	1	0	0	0
20	Methylation_Preprocess	1	0	0	0
21	miR_FindDirectTargets	0	1	0	0
22	miR_Mature_Clustering_CNMF	0	0	1	0
23	miR_Mature_Clustering_Consensus_Plus	0	0	1	0
24	miR_Mature_Preprocess	0	0	1	0
25	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	1	0
26	mRNA_lincRNA_CNMF	0	0	1	0
27	mRNA_Preprocess	0	0	1	0
28	mRNA_protein_coding_Clustering_CNMF	0	0	1	0
29	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	1	0
30	Mutation_APOBEC	0	1	0	0
31	Mutation_CoOccurrence	1	0	0	0
32	Mutation_Signature	0	1	0	0
33	Pathway_GSEA_mRNA	0	0	1	0
34	Aggregate_AnalysisFeatures	0	0	1	0
35	Aggregate_Molecular_Subtype_Clusters	1	0	0	0
36	CopyNumber_Clustering_CNMF	1	0	0	0
37	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
38	CopyNumber_Gistic2	0	0	1	0
39	CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
40	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
41	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
42	Correlate_Clinical_vs_Methylation	1	0	0	0
43	Correlate_Clinical_vs_miR	1	0	0	0
44	Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
45	Correlate_Clinical_vs_mRNA	1	0	0	0
46	Correlate_Clinical_vs_Mutation	1	0	0	0
47	Correlate_CopyNumber_vs_miR	1	0	0	0
48	Correlate_CopyNumber_vs_mRNA	0	0	1	0
49	Correlate_Methylation_vs_mRNA	1	0	0	0
50	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
51	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
52	Methylation_Clustering_CNMF	1	0	0	0
53	Methylation_Preprocess	1	0	0	0
54	miR_FindDirectTargets	1	0	0	0
55	miR_Mature_Clustering_CNMF	1	0	0	0
56	miR_Mature_Clustering_Consensus_Plus	1	0	0	0
57	miR_Mature_Preprocess	0	0	1	0
58	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	0	1
59	mRNA_lincRNA_CNMF	0	0	0	1
60	mRNA_Preprocess	0	0	1	0
61	mRNA_protein_coding_Clustering_CNMF	0	0	0	1
62	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	0	1
63	Mutation_APOBEC	0	1	0	0
64	Mutation_CoOccurrence	0	0	0	1
65	Mutation_Signature	0	1	0	0
66	Pathway_GSEA_mRNA	1	0	0	0
67	Aggregate_AnalysisFeatures	0	0	0	1
68	Aggregate_Molecular_Subtype_Clusters	0	0	1	0
69	CopyNumber_Clustering_CNMF	0	0	1	0
70	CopyNumber_Clustering_CNMF_thresholded	0	0	1	0
71	CopyNumber_Gistic2	0	0	1	0
72	CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
73	Correlate_Clinical_vs_CopyNumber_Arm	0	0	1	0
74	Correlate_Clinical_vs_CopyNumber_Focal	0	0	1	0
75	Correlate_Clinical_vs_Methylation	1	0	0	0
76	Correlate_Clinical_vs_miR	0	1	0	0
77	Correlate_Clinical_vs_Molecular_Subtypes	0	0	1	0
78	Correlate_Clinical_vs_mRNA	0	0	1	0
79	Correlate_Clinical_vs_Mutation	1	0	0	0
80	Correlate_CopyNumber_vs_miR	0	0	1	0
81	Correlate_CopyNumber_vs_mRNA	0	0	1	0
82	Correlate_Methylation_vs_mRNA	1	0	0	0
83	Correlate_molecularSubtype_vs_CopyNumber_Arm	0	0	1	0
84	Correlate_molecularSubtype_vs_CopyNumber_Focal	0	0	1	0
85	Methylation_Clustering_CNMF	1	0	0	0
86	Methylation_Preprocess	1	0	0	0
87	miR_FindDirectTargets	0	0	1	0
88	miR_Mature_Clustering_CNMF	0	0	1	0
89	miR_Mature_Clustering_Consensus_Plus	0	0	1	0
90	miR_Mature_Preprocess	0	0	1	0
91	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	1	0
92	mRNA_lincRNA_CNMF	0	0	1	0
93	mRNA_Preprocess	0	0	1	0
94	mRNA_protein_coding_Clustering_CNMF	0	0	1	0
95	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	1	0
96	Mutation_APOBEC	0	1	0	0
97	Mutation_CoOccurrence	1	0	0	0
98	Mutation_Signature	0	1	0	0
99	Pathway_GSEA_mRNA	0	0	0	1
100	Aggregate_AnalysisFeatures	0	1	0	0
101	Aggregate_Molecular_Subtype_Clusters	1	0	0	0
102	CopyNumber_Clustering_CNMF	1	0	0	0
103	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
104	CopyNumber_Gistic2	0	0	0	1
105	CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
106	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
107	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
108	Correlate_Clinical_vs_Methylation	1	0	0	0
109	Correlate_Clinical_vs_miR	1	0	0	0
110	Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
111	Correlate_Clinical_vs_mRNA	1	0	0	0
112	Correlate_Clinical_vs_Mutation	1	0	0	0
113	Correlate_CopyNumber_vs_miR	1	0	0	0
114	Correlate_CopyNumber_vs_mRNA	1	0	0	0
115	Correlate_Methylation_vs_mRNA	1	0	0	0
116	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
117	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
118	Methylation_Clustering_CNMF	1	0	0	0
119	Methylation_Preprocess	1	0	0	0
120	miR_FindDirectTargets	1	0	0	0
121	miR_Mature_Clustering_CNMF	1	0	0	0
122	miR_Mature_Clustering_Consensus_Plus	1	0	0	0
123	miR_Mature_Preprocess	0	0	1	0
124	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	0	1
125	mRNA_lincRNA_CNMF	0	0	0	1
126	mRNA_Preprocess	0	0	1	0
127	mRNA_protein_coding_Clustering_CNMF	0	0	0	1
128	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	0	1
129	Mutation_APOBEC	0	1	0	0
130	Mutation_CoOccurrence	1	0	0	0
131	Mutation_Signature	0	1	0	0
132	Pathway_GSEA_mRNA	1	0	0	0
133	Aggregate_AnalysisFeatures	0	1	0	0
134	Aggregate_Molecular_Subtype_Clusters	0	0	1	0
135	CopyNumber_Clustering_CNMF	1	0	0	0
136	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
137	CopyNumber_Gistic2	0	0	0	1
138	CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
139	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
140	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
141	Correlate_Clinical_vs_Methylation	1	0	0	0
142	Correlate_Clinical_vs_miR	1	0	0	0
143	Correlate_Clinical_vs_Molecular_Subtypes	0	0	1	0
144	Correlate_Clinical_vs_mRNA	0	0	1	0
145	Correlate_Clinical_vs_Mutation	1	0	0	0
146	Correlate_CopyNumber_vs_miR	1	0	0	0
147	Correlate_CopyNumber_vs_mRNA	1	0	0	0
148	Correlate_Methylation_vs_mRNA	1	0	0	0
149	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
150	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
151	Methylation_Clustering_CNMF	1	0	0	0
152	Methylation_Preprocess	1	0	0	0
153	miR_FindDirectTargets	1	0	0	0
154	miR_Mature_Clustering_CNMF	1	0	0	0
155	miR_Mature_Clustering_Consensus_Plus	1	0	0	0
156	miR_Mature_Preprocess	0	0	1	0
157	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	1	0
158	mRNA_lincRNA_CNMF	0	0	1	0
159	mRNA_Preprocess	0	0	1	0
160	mRNA_protein_coding_Clustering_CNMF	0	0	1	0
161	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	1	0
162	Mutation_APOBEC	1	0	0	0
163	Mutation_CoOccurrence	1	0	0	0
164	Mutation_Signature	1	0	0	0
165	Pathway_GSEA_mRNA	0	0	1	0
166	Aggregate_AnalysisFeatures	0	1	0	0
167	Aggregate_Molecular_Subtype_Clusters	1	0	0	0
168	CopyNumber_Clustering_CNMF	1	0	0	0
169	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
170	CopyNumber_Gistic2	0	0	0	1
171	CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
172	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
173	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
174	Correlate_Clinical_vs_Methylation	1	0	0	0
175	Correlate_Clinical_vs_miR	1	0	0	0
176	Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
177	Correlate_Clinical_vs_mRNA	1	0	0	0
178	Correlate_Clinical_vs_Mutation	1	0	0	0
179	Correlate_CopyNumber_vs_miR	1	0	0	0
180	Correlate_CopyNumber_vs_mRNA	1	0	0	0
181	Correlate_Methylation_vs_mRNA	1	0	0	0
182	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
183	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
184	Methylation_Clustering_CNMF	1	0	0	0
185	Methylation_Preprocess	1	0	0	0
186	miR_FindDirectTargets	1	0	0	0
187	miR_Mature_Clustering_CNMF	1	0	0	0
188	miR_Mature_Clustering_Consensus_Plus	1	0	0	0
189	miR_Mature_Preprocess	1	0	0	0
190	mRNA_lincRNA_Clustering_Consensus_Plus	1	0	0	0
191	mRNA_lincRNA_CNMF	1	0	0	0
192	mRNA_Preprocess	1	0	0	0
193	mRNA_protein_coding_Clustering_CNMF	1	0	0	0
194	mRNA_protein_coding_Clustering_Consensus_Plus	1	0	0	0
195	Mutation_APOBEC	1	0	0	0
196	Mutation_CoOccurrence	1	0	0	0
197	Mutation_Signature	1	0	0	0
198	Pathway_GSEA_mRNA	1	0	0	0
199	Aggregate_AnalysisFeatures	0	1	0	0
200	Aggregate_Molecular_Subtype_Clusters	1	0	0	0
201	CopyNumber_Clustering_CNMF	1	0	0	0
202	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
203	CopyNumber_Gistic2	0	1	0	0
204	CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
205	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
206	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
207	Correlate_Clinical_vs_Methylation	1	0	0	0
208	Correlate_Clinical_vs_miR	1	0	0	0
209	Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
210	Correlate_Clinical_vs_mRNA	1	0	0	0
211	Correlate_Clinical_vs_Mutation	1	0	0	0
212	Correlate_CopyNumber_vs_miR	1	0	0	0
213	Correlate_CopyNumber_vs_mRNA	1	0	0	0
214	Correlate_Methylation_vs_mRNA	1	0	0	0
215	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
216	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
217	Methylation_Clustering_CNMF	1	0	0	0
218	Methylation_Preprocess	1	0	0	0
219	miR_FindDirectTargets	1	0	0	0
220	miR_Mature_Clustering_CNMF	1	0	0	0
221	miR_Mature_Clustering_Consensus_Plus	1	0	0	0
222	miR_Mature_Preprocess	0	1	0	0
223	mRNA_lincRNA_Clustering_Consensus_Plus	1	0	0	0
224	mRNA_lincRNA_CNMF	1	0	0	0
225	mRNA_Preprocess	0	1	0	0
226	mRNA_protein_coding_Clustering_CNMF	1	0	0	0
227	mRNA_protein_coding_Clustering_Consensus_Plus	1	0	0	0
228	Mutation_APOBEC	0	1	0	0
229	Mutation_CoOccurrence	1	0	0	0
230	Mutation_Signature	0	1	0	0
231	Pathway_GSEA_mRNA	1	0	0	0
232	Aggregate_AnalysisFeatures	0	1	0	0
233	Aggregate_Gene_Status	1	0	0	0
234	Aggregate_Molecular_Subtype_Clusters	0	1	0	0
235	Append_CustomClinical	0	1	0	0
236	CoMut2.0	1	0	0	0
237	CoMut2CV	1	0	0	0
238	CoMutCV	1	0	0	0
239	CopyNumber_Clustering_CNMF	1	0	0	0
240	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
241	CopyNumber_Gistic2	0	1	0	0
242	CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
243	CopyNumberLowPass_Gistic2	0	1	0	0
244	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
245	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
246	Correlate_Clinical_vs_Methylation	1	0	0	0
247	Correlate_Clinical_vs_miR	1	0	0	0
248	Correlate_Clinical_vs_miRseq	1	0	0	0
249	Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
250	Correlate_Clinical_vs_mRNA	1	0	0	0
251	Correlate_Clinical_vs_mRNAseq	1	0	0	0
252	Correlate_Clinical_vs_Mutation	1	0	0	0
253	Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
254	Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
255	Correlate_Clinical_vs_MutationRate	1	0	0	0
256	Correlate_Clinical_vs_RPPA	1	0	0	0
257	Correlate_CopyNumber_vs_miR	1	0	0	0
258	Correlate_CopyNumber_vs_mRNA	1	0	0	0
259	Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
260	Correlate_Methylation_vs_mRNA	0	1	0	0
261	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
262	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
263	Correlate_molecularSubtype_vs_Mutation	1	0	0	0
264	Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
265	GenerateStickFigures2.0	1	0	0	0
266	GenerateStickFigures2CV	1	0	0	0
267	GenerateStickFiguresCV	1	0	0	0
268	iClusterPlus	1	0	0	0
269	LegoPlotter2.0	1	0	0	0
270	LegoPlotter2CV	1	0	0	0
271	LegoPlotterCV	1	0	0	0
272	Methylation_Clustering_CNMF	0	1	0	0
273	miR_Clustering_CNMF	1	0	0	0
274	miR_Clustering_Consensus_Plus	1	0	0	0
275	miR_FindDirectTargets	1	0	0	0
276	miRseq_Clustering_CNMF	0	1	0	0
277	miRseq_Clustering_Consensus_Plus	0	1	0	0
278	miRseq_FindDirectTargets	0	1	0	0
279	miRseq_Mature_Clustering_CNMF	0	1	0	0
280	miRseq_Mature_Clustering_Consensus_Plus	0	1	0	0
281	mRNA_Clustering_CNMF	0	1	0	0
282	mRNA_Clustering_Consensus_Plus	0	1	0	0
283	mRNAseq_Clustering_CNMF	0	1	0	0
284	mRNAseq_Clustering_Consensus_Plus	0	0	1	0
285	Mutation_APOBEC	1	0	0	0
286	Mutation_Assessor	1	0	0	0
287	Mutation_CHASM	1	0	0	0
288	Mutation_CoOccurrence	1	0	0	0
289	Mutation_CoOccurrence_Custom	1	0	0	0
290	MutSigNozzleReport2.0	1	0	0	0
291	MutSigNozzleReport2CV	1	0	0	0
292	MutSigNozzleReportCV	1	0	0	0
293	MutSigPreprocess2.0	1	0	0	0
294	MutSigRun2.0	1	0	0	0
295	MutSigRun2CV	1	0	0	0
296	MutSigRunCV	1	0	0	0
297	Paradigm_mRNA	1	0	0	0
298	Paradigm_mRNA_And_CopyNumber	1	0	0	0
299	Paradigm_Prepare_mRNA	1	0	0	0
300	Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
301	Paradigm_Prepare_RNASeq	1	0	0	0
302	Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
303	ParadigmPreprocess_mRNA	0	1	0	0
304	Paradigm_Preprocess_mRNA	1	0	0	0
305	Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
306	ParadigmPreprocess_RNASeq	0	1	0	0
307	Paradigm_Preprocess_RNASeq	1	0	0	0
308	Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
309	Paradigm_Report_Preprocess_mRNA	1	0	0	0
310	Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
311	Paradigm_Report_Preprocess_RNASeq	1	0	0	0
312	Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
313	Paradigm_RNASeq	1	0	0	0
314	Paradigm_RNASeq_And_Copy_Number	1	0	0	0
315	Pathway_FindEnrichedGenes	1	0	0	0
316	Pathway_GSEA_mRNAseq	1	0	0	0
317	Pathway_Hotnet	1	0	0	0
318	Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
319	Pathway_Paradigm_mRNA	1	0	0	0
320	Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
321	Pathway_Paradigm_RNASeq	1	0	0	0
322	Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
323	ProcessCoverageForMutSig2.0	1	0	0	0
324	RPPA_Clustering_CNMF	0	1	0	0
325	RPPA_Clustering_Consensus_Plus	0	1	0	0
326	TR-Aggregate_AnalysisFeatures	0	1	0	0
327	TR-Aggregate_Gene_Status	1	0	0	0
328	TR-Aggregate_Molecular_Subtype_Clusters	1	0	0	0
329	TR-Append_CustomClinical	1	0	0	0
330	TR-CoMut2.0	1	0	0	0
331	TR-CoMut2CV	1	0	0	0
332	TR-CoMutCV	1	0	0	0
333	TR-CopyNumber_Clustering_CNMF	1	0	0	0
334	TR-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
335	TR-CopyNumber_Gistic2	0	1	0	0
336	TR-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
337	TR-CopyNumberLowPass_Gistic2	1	0	0	0
338	TR-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
339	TR-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
340	TR-Correlate_Clinical_vs_Methylation	1	0	0	0
341	TR-Correlate_Clinical_vs_miR	1	0	0	0
342	TR-Correlate_Clinical_vs_miRseq	1	0	0	0
343	TR-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
344	TR-Correlate_Clinical_vs_mRNA	1	0	0	0
345	TR-Correlate_Clinical_vs_mRNAseq	1	0	0	0
346	TR-Correlate_Clinical_vs_Mutation	1	0	0	0
347	TR-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
348	TR-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
349	TR-Correlate_Clinical_vs_MutationRate	1	0	0	0
350	TR-Correlate_Clinical_vs_RPPA	1	0	0	0
351	TR-Correlate_CopyNumber_vs_miR	1	0	0	0
352	TR-Correlate_CopyNumber_vs_mRNA	1	0	0	0
353	TR-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
354	TR-Correlate_Methylation_vs_mRNA	1	0	0	0
355	TR-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
356	TR-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
357	TR-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
358	TR-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
359	TR-GenerateStickFigures2.0	1	0	0	0
360	TR-GenerateStickFigures2CV	1	0	0	0
361	TR-GenerateStickFiguresCV	1	0	0	0
362	TR-iClusterPlus	1	0	0	0
363	TR-LegoPlotter2.0	1	0	0	0
364	TR-LegoPlotter2CV	1	0	0	0
365	TR-LegoPlotterCV	1	0	0	0
366	TR-Methylation_Clustering_CNMF	0	1	0	0
367	TR-miR_Clustering_CNMF	1	0	0	0
368	TR-miR_Clustering_Consensus_Plus	1	0	0	0
369	TR-miR_FindDirectTargets	1	0	0	0
370	TR-miRseq_Clustering_CNMF	1	0	0	0
371	TR-miRseq_Clustering_Consensus_Plus	1	0	0	0
372	TR-miRseq_FindDirectTargets	1	0	0	0
373	TR-miRseq_Mature_Clustering_CNMF	1	0	0	0
374	TR-miRseq_Mature_Clustering_Consensus_Plus	1	0	0	0
375	TR-mRNA_Clustering_CNMF	1	0	0	0
376	TR-mRNA_Clustering_Consensus_Plus	1	0	0	0
377	TR-mRNAseq_Clustering_CNMF	1	0	0	0
378	TR-mRNAseq_Clustering_Consensus_Plus	1	0	0	0
379	TR-Mutation_APOBEC	1	0	0	0
380	TR-Mutation_Assessor	1	0	0	0
381	TR-Mutation_CHASM	1	0	0	0
382	TR-Mutation_CoOccurrence	1	0	0	0
383	TR-Mutation_CoOccurrence_Custom	1	0	0	0
384	TR-MutSigNozzleReport2.0	1	0	0	0
385	TR-MutSigNozzleReport2CV	1	0	0	0
386	TR-MutSigNozzleReportCV	1	0	0	0
387	TR-MutSigPreprocess2.0	1	0	0	0
388	TR-MutSigRun2.0	1	0	0	0
389	TR-MutSigRun2CV	1	0	0	0
390	TR-MutSigRunCV	1	0	0	0
391	TR-Paradigm_mRNA	1	0	0	0
392	TR-Paradigm_mRNA_And_CopyNumber	1	0	0	0
393	TR-Paradigm_Prepare_mRNA	1	0	0	0
394	TR-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
395	TR-Paradigm_Prepare_RNASeq	1	0	0	0
396	TR-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
397	TR-Paradigm_Preprocess_mRNA	1	0	0	0
398	TR-ParadigmPreprocess_mRNA	1	0	0	0
399	TR-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
400	TR-ParadigmPreprocess_RNASeq	0	1	0	0
401	TR-Paradigm_Preprocess_RNASeq	1	0	0	0
402	TR-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
403	TR-Paradigm_Report_Preprocess_mRNA	1	0	0	0
404	TR-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
405	TR-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
406	TR-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
407	TR-Paradigm_RNASeq	1	0	0	0
408	TR-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
409	TR-Pathway_FindEnrichedGenes	1	0	0	0
410	TR-Pathway_GSEA_mRNAseq	1	0	0	0
411	TR-Pathway_Hotnet	1	0	0	0
412	TR-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
413	TR-Pathway_Paradigm_mRNA	1	0	0	0
414	TR-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
415	TR-Pathway_Paradigm_RNASeq	1	0	0	0
416	TR-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
417	TR-ProcessCoverageForMutSig2.0	1	0	0	0
418	TR-RPPA_Clustering_CNMF	1	0	0	0
419	TR-RPPA_Clustering_Consensus_Plus	1	0	0	0
420	TP-Aggregate_AnalysisFeatures	0	1	0	0
421	TP-Aggregate_Gene_Status	1	0	0	0
422	TP-Aggregate_Molecular_Subtype_Clusters	0	1	0	0
423	TP-Append_CustomClinical	0	1	0	0
424	TP-CoMut2.0	1	0	0	0
425	TP-CoMut2CV	1	0	0	0
426	TP-CoMutCV	1	0	0	0
427	TP-CopyNumber_Clustering_CNMF	1	0	0	0
428	TP-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
429	TP-CopyNumber_Gistic2	0	1	0	0
430	TP-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
431	TP-CopyNumberLowPass_Gistic2	0	1	0	0
432	TP-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
433	TP-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
434	TP-Correlate_Clinical_vs_Methylation	1	0	0	0
435	TP-Correlate_Clinical_vs_miR	1	0	0	0
436	TP-Correlate_Clinical_vs_miRseq	1	0	0	0
437	TP-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
438	TP-Correlate_Clinical_vs_mRNA	1	0	0	0
439	TP-Correlate_Clinical_vs_mRNAseq	1	0	0	0
440	TP-Correlate_Clinical_vs_Mutation	1	0	0	0
441	TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
442	TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
443	TP-Correlate_Clinical_vs_MutationRate	1	0	0	0
444	TP-Correlate_Clinical_vs_RPPA	1	0	0	0
445	TP-Correlate_CopyNumber_vs_miR	1	0	0	0
446	TP-Correlate_CopyNumber_vs_mRNA	1	0	0	0
447	TP-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
448	TP-Correlate_Methylation_vs_mRNA	0	1	0	0
449	TP-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
450	TP-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
451	TP-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
452	TP-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
453	TP-GenerateStickFigures2.0	1	0	0	0
454	TP-GenerateStickFigures2CV	1	0	0	0
455	TP-GenerateStickFiguresCV	1	0	0	0
456	TP-iClusterPlus	1	0	0	0
457	TP-LegoPlotter2.0	1	0	0	0
458	TP-LegoPlotter2CV	1	0	0	0
459	TP-LegoPlotterCV	1	0	0	0
460	TP-Methylation_Clustering_CNMF	0	1	0	0
461	TP-miR_Clustering_CNMF	1	0	0	0
462	TP-miR_Clustering_Consensus_Plus	1	0	0	0
463	TP-miR_FindDirectTargets	1	0	0	0
464	TP-miRseq_Clustering_CNMF	0	1	0	0
465	TP-miRseq_Clustering_Consensus_Plus	0	1	0	0
466	TP-miRseq_FindDirectTargets	0	1	0	0
467	TP-miRseq_Mature_Clustering_CNMF	0	1	0	0
468	TP-miRseq_Mature_Clustering_Consensus_Plus	0	1	0	0
469	TP-mRNA_Clustering_CNMF	0	1	0	0
470	TP-mRNA_Clustering_Consensus_Plus	0	1	0	0
471	TP-mRNAseq_Clustering_CNMF	0	1	0	0
472	TP-mRNAseq_Clustering_Consensus_Plus	0	0	1	0
473	TP-Mutation_APOBEC	1	0	0	0
474	TP-Mutation_Assessor	1	0	0	0
475	TP-Mutation_CHASM	1	0	0	0
476	TP-Mutation_CoOccurrence	1	0	0	0
477	TP-Mutation_CoOccurrence_Custom	1	0	0	0
478	TP-MutSigNozzleReport2.0	1	0	0	0
479	TP-MutSigNozzleReport2CV	1	0	0	0
480	TP-MutSigNozzleReportCV	1	0	0	0
481	TP-MutSigPreprocess2.0	0	1	0	0
482	TP-MutSigRun2.0	1	0	0	0
483	TP-MutSigRun2CV	0	1	0	0
484	TP-MutSigRunCV	0	1	0	0
485	TP-Paradigm_mRNA	1	0	0	0
486	TP-Paradigm_mRNA_And_CopyNumber	1	0	0	0
487	TP-Paradigm_Prepare_mRNA	1	0	0	0
488	TP-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
489	TP-Paradigm_Prepare_RNASeq	1	0	0	0
490	TP-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
491	TP-ParadigmPreprocess_mRNA	0	1	0	0
492	TP-Paradigm_Preprocess_mRNA	1	0	0	0
493	TP-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
494	TP-ParadigmPreprocess_RNASeq	0	1	0	0
495	TP-Paradigm_Preprocess_RNASeq	1	0	0	0
496	TP-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
497	TP-Paradigm_Report_Preprocess_mRNA	1	0	0	0
498	TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
499	TP-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
500	TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
501	TP-Paradigm_RNASeq	1	0	0	0
502	TP-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
503	TP-Pathway_FindEnrichedGenes	1	0	0	0
504	TP-Pathway_GSEA_mRNAseq	1	0	0	0
505	TP-Pathway_Hotnet	1	0	0	0
506	TP-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
507	TP-Pathway_Paradigm_mRNA	1	0	0	0
508	TP-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
509	TP-Pathway_Paradigm_RNASeq	1	0	0	0
510	TP-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
511	TP-ProcessCoverageForMutSig2.0	1	0	0	0
512	TP-RPPA_Clustering_CNMF	0	1	0	0
513	TP-RPPA_Clustering_Consensus_Plus	0	1	0	0
514	TM-Aggregate_AnalysisFeatures	0	1	0	0
515	TM-Aggregate_Gene_Status	1	0	0	0
516	TM-Aggregate_Molecular_Subtype_Clusters	1	0	0	0
517	TM-Append_CustomClinical	1	0	0	0
518	TM-CoMut2.0	1	0	0	0
519	TM-CoMut2CV	1	0	0	0
520	TM-CoMutCV	1	0	0	0
521	TM-CopyNumber_Clustering_CNMF	1	0	0	0
522	TM-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
523	TM-CopyNumber_Gistic2	0	1	0	0
524	TM-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
525	TM-CopyNumberLowPass_Gistic2	1	0	0	0
526	TM-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
527	TM-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
528	TM-Correlate_Clinical_vs_Methylation	1	0	0	0
529	TM-Correlate_Clinical_vs_miR	1	0	0	0
530	TM-Correlate_Clinical_vs_miRseq	1	0	0	0
531	TM-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
532	TM-Correlate_Clinical_vs_mRNA	1	0	0	0
533	TM-Correlate_Clinical_vs_mRNAseq	1	0	0	0
534	TM-Correlate_Clinical_vs_Mutation	1	0	0	0
535	TM-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
536	TM-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
537	TM-Correlate_Clinical_vs_MutationRate	1	0	0	0
538	TM-Correlate_Clinical_vs_RPPA	1	0	0	0
539	TM-Correlate_CopyNumber_vs_miR	1	0	0	0
540	TM-Correlate_CopyNumber_vs_mRNA	1	0	0	0
541	TM-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
542	TM-Correlate_Methylation_vs_mRNA	1	0	0	0
543	TM-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
544	TM-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
545	TM-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
546	TM-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
547	TM-GenerateStickFigures2.0	1	0	0	0
548	TM-GenerateStickFigures2CV	1	0	0	0
549	TM-GenerateStickFiguresCV	1	0	0	0
550	TM-iClusterPlus	1	0	0	0
551	TM-LegoPlotter2.0	1	0	0	0
552	TM-LegoPlotter2CV	1	0	0	0
553	TM-LegoPlotterCV	1	0	0	0
554	TM-Methylation_Clustering_CNMF	0	1	0	0
555	TM-miR_Clustering_CNMF	1	0	0	0
556	TM-miR_Clustering_Consensus_Plus	1	0	0	0
557	TM-miR_FindDirectTargets	1	0	0	0
558	TM-miRseq_Clustering_CNMF	1	0	0	0
559	TM-miRseq_Clustering_Consensus_Plus	1	0	0	0
560	TM-miRseq_FindDirectTargets	1	0	0	0
561	TM-miRseq_Mature_Clustering_CNMF	1	0	0	0
562	TM-miRseq_Mature_Clustering_Consensus_Plus	1	0	0	0
563	TM-mRNA_Clustering_CNMF	1	0	0	0
564	TM-mRNA_Clustering_Consensus_Plus	1	0	0	0
565	TM-mRNAseq_Clustering_CNMF	1	0	0	0
566	TM-mRNAseq_Clustering_Consensus_Plus	1	0	0	0
567	TM-Mutation_APOBEC	1	0	0	0
568	TM-Mutation_Assessor	1	0	0	0
569	TM-Mutation_CHASM	1	0	0	0
570	TM-Mutation_CoOccurrence	1	0	0	0
571	TM-Mutation_CoOccurrence_Custom	1	0	0	0
572	TM-MutSigNozzleReport2.0	1	0	0	0
573	TM-MutSigNozzleReport2CV	1	0	0	0
574	TM-MutSigNozzleReportCV	1	0	0	0
575	TM-MutSigPreprocess2.0	1	0	0	0
576	TM-MutSigRun2.0	1	0	0	0
577	TM-MutSigRun2CV	1	0	0	0
578	TM-MutSigRunCV	1	0	0	0
579	TM-Paradigm_mRNA	1	0	0	0
580	TM-Paradigm_mRNA_And_CopyNumber	1	0	0	0
581	TM-Paradigm_Prepare_mRNA	1	0	0	0
582	TM-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
583	TM-Paradigm_Prepare_RNASeq	1	0	0	0
584	TM-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
585	TM-Paradigm_Preprocess_mRNA	1	0	0	0
586	TM-ParadigmPreprocess_mRNA	1	0	0	0
587	TM-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
588	TM-ParadigmPreprocess_RNASeq	0	1	0	0
589	TM-Paradigm_Preprocess_RNASeq	1	0	0	0
590	TM-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
591	TM-Paradigm_Report_Preprocess_mRNA	1	0	0	0
592	TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
593	TM-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
594	TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
595	TM-Paradigm_RNASeq	1	0	0	0
596	TM-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
597	TM-Pathway_FindEnrichedGenes	1	0	0	0
598	TM-Pathway_GSEA_mRNAseq	1	0	0	0
599	TM-Pathway_Hotnet	1	0	0	0
600	TM-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
601	TM-Pathway_Paradigm_mRNA	1	0	0	0
602	TM-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
603	TM-Pathway_Paradigm_RNASeq	1	0	0	0
604	TM-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
605	TM-ProcessCoverageForMutSig2.0	1	0	0	0
606	TM-RPPA_Clustering_CNMF	1	0	0	0
607	TM-RPPA_Clustering_Consensus_Plus	1	0	0	0
608	NT-Aggregate_AnalysisFeatures	0	1	0	0
609	NT-Aggregate_Gene_Status	1	0	0	0
610	NT-Aggregate_Molecular_Subtype_Clusters	0	1	0	0
611	NT-Append_CustomClinical	0	1	0	0
612	NT-CoMut2.0	1	0	0	0
613	NT-CoMut2CV	1	0	0	0
614	NT-CoMutCV	1	0	0	0
615	NT-CopyNumber_Clustering_CNMF	1	0	0	0
616	NT-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
617	NT-CopyNumber_Gistic2	0	1	0	0
618	NT-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
619	NT-CopyNumberLowPass_Gistic2	0	1	0	0
620	NT-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
621	NT-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
622	NT-Correlate_Clinical_vs_Methylation	1	0	0	0
623	NT-Correlate_Clinical_vs_miR	1	0	0	0
624	NT-Correlate_Clinical_vs_miRseq	1	0	0	0
625	NT-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
626	NT-Correlate_Clinical_vs_mRNA	1	0	0	0
627	NT-Correlate_Clinical_vs_mRNAseq	1	0	0	0
628	NT-Correlate_Clinical_vs_Mutation	1	0	0	0
629	NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
630	NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
631	NT-Correlate_Clinical_vs_MutationRate	1	0	0	0
632	NT-Correlate_Clinical_vs_RPPA	1	0	0	0
633	NT-Correlate_CopyNumber_vs_miR	1	0	0	0
634	NT-Correlate_CopyNumber_vs_mRNA	1	0	0	0
635	NT-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
636	NT-Correlate_Methylation_vs_mRNA	0	1	0	0
637	NT-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
638	NT-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
639	NT-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
640	NT-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
641	NT-GenerateStickFigures2.0	1	0	0	0
642	NT-GenerateStickFigures2CV	1	0	0	0
643	NT-GenerateStickFiguresCV	1	0	0	0
644	NT-iClusterPlus	1	0	0	0
645	NT-LegoPlotter2.0	1	0	0	0
646	NT-LegoPlotter2CV	1	0	0	0
647	NT-LegoPlotterCV	1	0	0	0
648	NT-Methylation_Clustering_CNMF	0	1	0	0
649	NT-miR_Clustering_CNMF	1	0	0	0
650	NT-miR_Clustering_Consensus_Plus	1	0	0	0
651	NT-miR_FindDirectTargets	1	0	0	0
652	NT-miRseq_Clustering_CNMF	1	0	0	0
653	NT-miRseq_Clustering_Consensus_Plus	1	0	0	0
654	NT-miRseq_FindDirectTargets	1	0	0	0
655	NT-miRseq_Mature_Clustering_CNMF	1	0	0	0
656	NT-miRseq_Mature_Clustering_Consensus_Plus	1	0	0	0
657	NT-mRNA_Clustering_CNMF	0	1	0	0
658	NT-mRNA_Clustering_Consensus_Plus	0	1	0	0
659	NT-mRNAseq_Clustering_CNMF	0	1	0	0
660	NT-mRNAseq_Clustering_Consensus_Plus	0	0	1	0
661	NT-Mutation_APOBEC	1	0	0	0
662	NT-Mutation_Assessor	1	0	0	0
663	NT-Mutation_CHASM	1	0	0	0
664	NT-Mutation_CoOccurrence	1	0	0	0
665	NT-Mutation_CoOccurrence_Custom	1	0	0	0
666	NT-MutSigNozzleReport2.0	1	0	0	0
667	NT-MutSigNozzleReport2CV	1	0	0	0
668	NT-MutSigNozzleReportCV	1	0	0	0
669	NT-MutSigPreprocess2.0	1	0	0	0
670	NT-MutSigRun2.0	1	0	0	0
671	NT-MutSigRun2CV	1	0	0	0
672	NT-MutSigRunCV	1	0	0	0
673	NT-Paradigm_mRNA	1	0	0	0
674	NT-Paradigm_mRNA_And_CopyNumber	1	0	0	0
675	NT-Paradigm_Prepare_mRNA	1	0	0	0
676	NT-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
677	NT-Paradigm_Prepare_RNASeq	1	0	0	0
678	NT-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
679	NT-ParadigmPreprocess_mRNA	0	1	0	0
680	NT-Paradigm_Preprocess_mRNA	1	0	0	0
681	NT-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
682	NT-ParadigmPreprocess_RNASeq	0	1	0	0
683	NT-Paradigm_Preprocess_RNASeq	1	0	0	0
684	NT-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
685	NT-Paradigm_Report_Preprocess_mRNA	1	0	0	0
686	NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
687	NT-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
688	NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
689	NT-Paradigm_RNASeq	1	0	0	0
690	NT-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
691	NT-Pathway_FindEnrichedGenes	1	0	0	0
692	NT-Pathway_GSEA_mRNAseq	1	0	0	0
693	NT-Pathway_Hotnet	1	0	0	0
694	NT-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
695	NT-Pathway_Paradigm_mRNA	1	0	0	0
696	NT-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
697	NT-Pathway_Paradigm_RNASeq	1	0	0	0
698	NT-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
699	NT-ProcessCoverageForMutSig2.0	1	0	0	0
700	NT-RPPA_Clustering_CNMF	1	0	0	0
701	NT-RPPA_Clustering_Consensus_Plus	1	0	0	0
702	NB-Aggregate_AnalysisFeatures	0	1	0	0
703	NB-Aggregate_Gene_Status	1	0	0	0
704	NB-Aggregate_Molecular_Subtype_Clusters	1	0	0	0
705	NB-Append_CustomClinical	0	1	0	0
706	NB-CoMut2.0	1	0	0	0
707	NB-CoMut2CV	1	0	0	0
708	NB-CoMutCV	1	0	0	0
709	NB-CopyNumber_Clustering_CNMF	1	0	0	0
710	NB-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
711	NB-CopyNumber_Gistic2	0	1	0	0
712	NB-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
713	NB-CopyNumberLowPass_Gistic2	0	1	0	0
714	NB-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
715	NB-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
716	NB-Correlate_Clinical_vs_Methylation	1	0	0	0
717	NB-Correlate_Clinical_vs_miR	1	0	0	0
718	NB-Correlate_Clinical_vs_miRseq	1	0	0	0
719	NB-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
720	NB-Correlate_Clinical_vs_mRNA	1	0	0	0
721	NB-Correlate_Clinical_vs_mRNAseq	1	0	0	0
722	NB-Correlate_Clinical_vs_Mutation	1	0	0	0
723	NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
724	NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
725	NB-Correlate_Clinical_vs_MutationRate	1	0	0	0
726	NB-Correlate_Clinical_vs_RPPA	1	0	0	0
727	NB-Correlate_CopyNumber_vs_miR	1	0	0	0
728	NB-Correlate_CopyNumber_vs_mRNA	1	0	0	0
729	NB-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
730	NB-Correlate_Methylation_vs_mRNA	1	0	0	0
731	NB-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
732	NB-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
733	NB-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
734	NB-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
735	NB-GenerateStickFigures2.0	1	0	0	0
736	NB-GenerateStickFigures2CV	1	0	0	0
737	NB-GenerateStickFiguresCV	1	0	0	0
738	NB-iClusterPlus	1	0	0	0
739	NB-LegoPlotter2.0	1	0	0	0
740	NB-LegoPlotter2CV	1	0	0	0
741	NB-LegoPlotterCV	1	0	0	0
742	NB-Methylation_Clustering_CNMF	1	0	0	0
743	NB-miR_Clustering_CNMF	1	0	0	0
744	NB-miR_Clustering_Consensus_Plus	1	0	0	0
745	NB-miR_FindDirectTargets	1	0	0	0
746	NB-miRseq_Clustering_CNMF	1	0	0	0
747	NB-miRseq_Clustering_Consensus_Plus	1	0	0	0
748	NB-miRseq_FindDirectTargets	1	0	0	0
749	NB-miRseq_Mature_Clustering_CNMF	1	0	0	0
750	NB-miRseq_Mature_Clustering_Consensus_Plus	1	0	0	0
751	NB-mRNA_Clustering_CNMF	1	0	0	0
752	NB-mRNA_Clustering_Consensus_Plus	1	0	0	0
753	NB-mRNAseq_Clustering_CNMF	1	0	0	0
754	NB-mRNAseq_Clustering_Consensus_Plus	1	0	0	0
755	NB-Mutation_APOBEC	1	0	0	0
756	NB-Mutation_Assessor	1	0	0	0
757	NB-Mutation_CHASM	1	0	0	0
758	NB-Mutation_CoOccurrence	1	0	0	0
759	NB-Mutation_CoOccurrence_Custom	1	0	0	0
760	NB-MutSigNozzleReport2.0	1	0	0	0
761	NB-MutSigNozzleReport2CV	1	0	0	0
762	NB-MutSigNozzleReportCV	1	0	0	0
763	NB-MutSigPreprocess2.0	1	0	0	0
764	NB-MutSigRun2.0	1	0	0	0
765	NB-MutSigRun2CV	1	0	0	0
766	NB-MutSigRunCV	1	0	0	0
767	NB-Paradigm_mRNA	1	0	0	0
768	NB-Paradigm_mRNA_And_CopyNumber	1	0	0	0
769	NB-Paradigm_Prepare_mRNA	1	0	0	0
770	NB-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
771	NB-Paradigm_Prepare_RNASeq	1	0	0	0
772	NB-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
773	NB-Paradigm_Preprocess_mRNA	1	0	0	0
774	NB-ParadigmPreprocess_mRNA	1	0	0	0
775	NB-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
776	NB-Paradigm_Preprocess_RNASeq	1	0	0	0
777	NB-ParadigmPreprocess_RNASeq	1	0	0	0
778	NB-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
779	NB-Paradigm_Report_Preprocess_mRNA	1	0	0	0
780	NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
781	NB-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
782	NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
783	NB-Paradigm_RNASeq	1	0	0	0
784	NB-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
785	NB-Pathway_FindEnrichedGenes	1	0	0	0
786	NB-Pathway_GSEA_mRNAseq	1	0	0	0
787	NB-Pathway_Hotnet	1	0	0	0
788	NB-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
789	NB-Pathway_Paradigm_mRNA	1	0	0	0
790	NB-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
791	NB-Pathway_Paradigm_RNASeq	1	0	0	0
792	NB-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
793	NB-ProcessCoverageForMutSig2.0	1	0	0	0
794	NB-RPPA_Clustering_CNMF	1	0	0	0
795	NB-RPPA_Clustering_Consensus_Plus	1	0	0	0
796	FFPE-Aggregate_AnalysisFeatures	0	1	0	0
797	FFPE-Aggregate_Gene_Status	1	0	0	0
798	FFPE-Aggregate_Molecular_Subtype_Clusters	1	0	0	0
799	FFPE-Append_CustomClinical	1	0	0	0
800	FFPE-CoMut2.0	1	0	0	0
801	FFPE-CoMut2CV	1	0	0	0
802	FFPE-CoMutCV	1	0	0	0
803	FFPE-CopyNumber_Clustering_CNMF	1	0	0	0
804	FFPE-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
805	FFPE-CopyNumber_Gistic2	0	1	0	0
806	FFPE-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
807	FFPE-CopyNumberLowPass_Gistic2	1	0	0	0
808	FFPE-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
809	FFPE-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
810	FFPE-Correlate_Clinical_vs_Methylation	1	0	0	0
811	FFPE-Correlate_Clinical_vs_miR	1	0	0	0
812	FFPE-Correlate_Clinical_vs_miRseq	1	0	0	0
813	FFPE-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
814	FFPE-Correlate_Clinical_vs_mRNA	1	0	0	0
815	FFPE-Correlate_Clinical_vs_mRNAseq	1	0	0	0
816	FFPE-Correlate_Clinical_vs_Mutation	1	0	0	0
817	FFPE-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
818	FFPE-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
819	FFPE-Correlate_Clinical_vs_MutationRate	1	0	0	0
820	FFPE-Correlate_Clinical_vs_RPPA	1	0	0	0
821	FFPE-Correlate_CopyNumber_vs_miR	1	0	0	0
822	FFPE-Correlate_CopyNumber_vs_mRNA	1	0	0	0
823	FFPE-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
824	FFPE-Correlate_Methylation_vs_mRNA	1	0	0	0
825	FFPE-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
826	FFPE-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
827	FFPE-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
828	FFPE-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
829	FFPE-GenerateStickFigures2.0	1	0	0	0
830	FFPE-GenerateStickFigures2CV	1	0	0	0
831	FFPE-GenerateStickFiguresCV	1	0	0	0
832	FFPE-iClusterPlus	1	0	0	0
833	FFPE-LegoPlotter2.0	1	0	0	0
834	FFPE-LegoPlotter2CV	1	0	0	0
835	FFPE-LegoPlotterCV	1	0	0	0
836	FFPE-Methylation_Clustering_CNMF	0	1	0	0
837	FFPE-miR_Clustering_CNMF	1	0	0	0
838	FFPE-miR_Clustering_Consensus_Plus	1	0	0	0
839	FFPE-miR_FindDirectTargets	1	0	0	0
840	FFPE-miRseq_Clustering_CNMF	1	0	0	0
841	FFPE-miRseq_Clustering_Consensus_Plus	1	0	0	0
842	FFPE-miRseq_FindDirectTargets	1	0	0	0
843	FFPE-miRseq_Mature_Clustering_CNMF	1	0	0	0
844	FFPE-miRseq_Mature_Clustering_Consensus_Plus	1	0	0	0
845	FFPE-mRNA_Clustering_CNMF	1	0	0	0
846	FFPE-mRNA_Clustering_Consensus_Plus	1	0	0	0
847	FFPE-mRNAseq_Clustering_CNMF	1	0	0	0
848	FFPE-mRNAseq_Clustering_Consensus_Plus	1	0	0	0
849	FFPE-Mutation_APOBEC	1	0	0	0
850	FFPE-Mutation_Assessor	1	0	0	0
851	FFPE-Mutation_CHASM	1	0	0	0
852	FFPE-Mutation_CoOccurrence	1	0	0	0
853	FFPE-Mutation_CoOccurrence_Custom	1	0	0	0
854	FFPE-MutSigNozzleReport2.0	1	0	0	0
855	FFPE-MutSigNozzleReport2CV	1	0	0	0
856	FFPE-MutSigNozzleReportCV	1	0	0	0
857	FFPE-MutSigPreprocess2.0	1	0	0	0
858	FFPE-MutSigRun2.0	1	0	0	0
859	FFPE-MutSigRun2CV	1	0	0	0
860	FFPE-MutSigRunCV	1	0	0	0
861	FFPE-Paradigm_mRNA	1	0	0	0
862	FFPE-Paradigm_mRNA_And_CopyNumber	1	0	0	0
863	FFPE-Paradigm_Prepare_mRNA	1	0	0	0
864	FFPE-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
865	FFPE-Paradigm_Prepare_RNASeq	1	0	0	0
866	FFPE-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
867	FFPE-Paradigm_Preprocess_mRNA	1	0	0	0
868	FFPE-ParadigmPreprocess_mRNA	1	0	0	0
869	FFPE-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
870	FFPE-Paradigm_Preprocess_RNASeq	1	0	0	0
871	FFPE-ParadigmPreprocess_RNASeq	1	0	0	0
872	FFPE-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
873	FFPE-Paradigm_Report_Preprocess_mRNA	1	0	0	0
874	FFPE-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
875	FFPE-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
876	FFPE-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
877	FFPE-Paradigm_RNASeq	1	0	0	0
878	FFPE-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
879	FFPE-Pathway_FindEnrichedGenes	1	0	0	0
880	FFPE-Pathway_GSEA_mRNAseq	1	0	0	0
881	FFPE-Pathway_Hotnet	1	0	0	0
882	FFPE-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
883	FFPE-Pathway_Paradigm_mRNA	1	0	0	0
884	FFPE-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
885	FFPE-Pathway_Paradigm_RNASeq	1	0	0	0
886	FFPE-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
887	FFPE-ProcessCoverageForMutSig2.0	1	0	0	0
888	FFPE-RPPA_Clustering_CNMF	1	0	0	0
889	FFPE-RPPA_Clustering_Consensus_Plus	1	0	0	0
	Total	721	89	64	15

This table generated on Thu Jan 26 11:03:44 2017

Broad GDAC Analyses Status dev Run for Tumor Type: COADREAD

Broad GDAC Analyses Status
dev Run for Tumor Type: COADREAD