Broad GDAC Analyses Status
dev Run for Tumor Type: LAML
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
LAML
200
200
197
0
194
0
179
0
188
0
197
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
0
0
1
0
2
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
3
CopyNumber_Clustering_CNMF
0
0
0
1
0
4
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
5
CopyNumber_Gistic2
0
0
0
1
0
6
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
7
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
8
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
9
Correlate_Clinical_vs_Methylation
1
0
0
0
0
10
Correlate_Clinical_vs_miR
0
1
0
0
0
11
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
12
Correlate_Clinical_vs_mRNA
0
0
0
1
0
13
Correlate_Clinical_vs_Mutation
1
0
0
0
0
14
Correlate_CopyNumber_vs_miR
0
0
0
1
0
15
Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
16
Correlate_Methylation_vs_mRNA
1
0
0
0
0
17
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
18
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
19
Methylation_Clustering_CNMF
1
0
0
0
0
20
Methylation_Preprocess
1
0
0
0
0
21
miR_FindDirectTargets
0
0
0
1
0
22
miR_Mature_Clustering_CNMF
0
0
0
1
0
23
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
24
miR_Mature_Preprocess
0
0
0
1
0
25
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
26
mRNA_lincRNA_CNMF
0
0
0
1
0
27
mRNA_Preprocess
0
0
0
1
0
28
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
29
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
30
Mutation_APOBEC
0
1
0
0
0
31
Mutation_CoOccurrence
0
0
0
0
1
32
Mutation_Signature
0
1
0
0
0
33
Pathway_GSEA_mRNA
0
0
0
0
1
34
Aggregate_AnalysisFeatures
0
0
0
1
0
35
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
36
CopyNumber_Clustering_CNMF
0
0
0
1
0
37
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
38
CopyNumber_Gistic2
0
0
0
1
0
39
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
40
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
41
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
42
Correlate_Clinical_vs_Methylation
1
0
0
0
0
43
Correlate_Clinical_vs_miR
0
1
0
0
0
44
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
45
Correlate_Clinical_vs_mRNA
0
0
0
1
0
46
Correlate_Clinical_vs_Mutation
1
0
0
0
0
47
Correlate_CopyNumber_vs_miR
0
0
0
1
0
48
Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
49
Correlate_Methylation_vs_mRNA
1
0
0
0
0
50
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
51
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
52
Methylation_Clustering_CNMF
1
0
0
0
0
53
Methylation_Preprocess
1
0
0
0
0
54
miR_FindDirectTargets
0
0
0
1
0
55
miR_Mature_Clustering_CNMF
0
0
0
1
0
56
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
57
miR_Mature_Preprocess
0
0
0
1
0
58
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
59
mRNA_lincRNA_CNMF
0
0
0
1
0
60
mRNA_Preprocess
0
0
0
1
0
61
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
62
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
63
Mutation_APOBEC
0
1
0
0
0
64
Mutation_CoOccurrence
0
0
0
0
1
65
Mutation_Signature
0
1
0
0
0
66
Pathway_GSEA_mRNA
0
0
0
0
1
67
Aggregate_AnalysisFeatures
0
1
0
0
0
68
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
69
CopyNumber_Clustering_CNMF
1
0
0
0
0
70
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
71
CopyNumber_Gistic2
0
0
0
0
1
72
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
73
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
74
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
75
Correlate_Clinical_vs_Methylation
1
0
0
0
0
76
Correlate_Clinical_vs_miR
1
0
0
0
0
77
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
78
Correlate_Clinical_vs_mRNA
1
0
0
0
0
79
Correlate_Clinical_vs_Mutation
1
0
0
0
0
80
Correlate_CopyNumber_vs_miR
1
0
0
0
0
81
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
82
Correlate_Methylation_vs_mRNA
1
0
0
0
0
83
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
84
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
85
Methylation_Clustering_CNMF
1
0
0
0
0
86
Methylation_Preprocess
1
0
0
0
0
87
miR_FindDirectTargets
1
0
0
0
0
88
miR_Mature_Clustering_CNMF
1
0
0
0
0
89
miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
90
miR_Mature_Preprocess
1
0
0
0
0
91
mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
92
mRNA_lincRNA_CNMF
1
0
0
0
0
93
mRNA_Preprocess
1
0
0
0
0
94
mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
95
mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
96
Mutation_APOBEC
1
0
0
0
0
97
Mutation_CoOccurrence
1
0
0
0
0
98
Mutation_Signature
1
0
0
0
0
99
Pathway_GSEA_mRNA
1
0
0
0
0
100
Aggregate_AnalysisFeatures
0
1
0
0
0
101
Aggregate_Gene_Status
1
0
0
0
0
102
Aggregate_Molecular_Subtype_Clusters
0
1
0
0
0
103
Append_CustomClinical
0
1
0
0
0
104
CoMut2.0
1
0
0
0
0
105
CoMut2CV
1
0
0
0
0
106
CoMutCV
1
0
0
0
0
107
CopyNumber_Clustering_CNMF
1
0
0
0
0
108
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
109
CopyNumber_Gistic2
0
1
0
0
0
110
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
111
CopyNumberLowPass_Gistic2
1
0
0
0
0
112
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
113
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
114
Correlate_Clinical_vs_Methylation
1
0
0
0
0
115
Correlate_Clinical_vs_miR
1
0
0
0
0
116
Correlate_Clinical_vs_miRseq
1
0
0
0
0
117
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
118
Correlate_Clinical_vs_mRNA
1
0
0
0
0
119
Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
120
Correlate_Clinical_vs_Mutation
1
0
0
0
0
121
Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
122
Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
123
Correlate_Clinical_vs_MutationRate
1
0
0
0
0
124
Correlate_Clinical_vs_RPPA
1
0
0
0
0
125
Correlate_CopyNumber_vs_miR
1
0
0
0
0
126
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
127
Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
128
Correlate_Methylation_vs_mRNA
0
1
0
0
0
129
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
130
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
131
Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
132
Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
133
GenerateStickFigures2.0
1
0
0
0
0
134
GenerateStickFigures2CV
1
0
0
0
0
135
GenerateStickFiguresCV
1
0
0
0
0
136
iClusterPlus
1
0
0
0
0
137
LegoPlotter2.0
1
0
0
0
0
138
LegoPlotter2CV
1
0
0
0
0
139
LegoPlotterCV
1
0
0
0
0
140
Methylation_Clustering_CNMF
0
1
0
0
0
141
miR_Clustering_CNMF
1
0
0
0
0
142
miR_Clustering_Consensus_Plus
1
0
0
0
0
143
miR_FindDirectTargets
1
0
0
0
0
144
miRseq_Clustering_CNMF
0
1
0
0
0
145
miRseq_Clustering_Consensus_Plus
0
1
0
0
0
146
miRseq_FindDirectTargets
1
0
0
0
0
147
miRseq_Mature_Clustering_CNMF
1
0
0
0
0
148
miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
149
mRNA_Clustering_CNMF
1
0
0
0
0
150
mRNA_Clustering_Consensus_Plus
1
0
0
0
0
151
mRNAseq_Clustering_CNMF
0
1
0
0
0
152
mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
153
Mutation_APOBEC
1
0
0
0
0
154
Mutation_Assessor
1
0
0
0
0
155
Mutation_CHASM
1
0
0
0
0
156
Mutation_CoOccurrence
1
0
0
0
0
157
Mutation_CoOccurrence_Custom
1
0
0
0
0
158
MutSigNozzleReport2.0
1
0
0
0
0
159
MutSigNozzleReport2CV
1
0
0
0
0
160
MutSigNozzleReportCV
1
0
0
0
0
161
MutSigPreprocess2.0
1
0
0
0
0
162
MutSigRun2.0
1
0
0
0
0
163
MutSigRun2CV
1
0
0
0
0
164
MutSigRunCV
1
0
0
0
0
165
Paradigm_mRNA
1
0
0
0
0
166
Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
167
Paradigm_Prepare_mRNA
1
0
0
0
0
168
Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
169
Paradigm_Prepare_RNASeq
1
0
0
0
0
170
Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
171
Paradigm_Preprocess_mRNA
1
0
0
0
0
172
ParadigmPreprocess_mRNA
1
0
0
0
0
173
Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
174
ParadigmPreprocess_RNASeq
0
1
0
0
0
175
Paradigm_Preprocess_RNASeq
1
0
0
0
0
176
Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
177
Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
178
Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
179
Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
180
Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
181
Paradigm_RNASeq
1
0
0
0
0
182
Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
183
Pathway_FindEnrichedGenes
1
0
0
0
0
184
Pathway_GSEA_mRNAseq
1
0
0
0
0
185
Pathway_Hotnet
1
0
0
0
0
186
Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
187
Pathway_Paradigm_mRNA
1
0
0
0
0
188
Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
189
Pathway_Paradigm_RNASeq
1
0
0
0
0
190
Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
191
ProcessCoverageForMutSig2.0
1
0
0
0
0
192
RPPA_Clustering_CNMF
1
0
0
0
0
193
RPPA_Clustering_Consensus_Plus
1
0
0
0
0
194
TP-Add_CustomEvents
1
0
0
0
0
195
TP-Add_CustomEvents_nonDCC_Clinical
1
0
0
0
0
196
TP-Aggregate_Gene_Status
1
0
0
0
0
197
TP-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
198
TP-CoMut1.5
1
0
0
0
0
199
TP-CoMut2.0
1
0
0
0
0
200
TP-CoMutCV
1
0
0
0
0
201
TP-CoMutMerged
1
0
0
0
0
202
TP-CopyNumber_Clustering_CNMF
1
0
0
0
0
203
TP-CopyNumber_Gistic2
1
0
0
0
0
204
TP-CopyNumber_Gistic2_Analysis
1
0
0
0
0
205
TP-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
206
TP-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
207
TP-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
208
TP-Correlate_Clinical_vs_CustomEvents
1
0
0
0
0
209
TP-Correlate_Clinical_vs_Methylation
1
0
0
0
0
210
TP-Correlate_Clinical_vs_miR
1
0
0
0
0
211
TP-Correlate_Clinical_vs_miRseq
1
0
0
0
0
212
TP-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
213
TP-Correlate_Clinical_vs_mRNA
1
0
0
0
0
214
TP-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
215
TP-Correlate_Clinical_vs_Mutation
1
0
0
0
0
216
TP-Correlate_Clinical_vs_RPPA
1
0
0
0
0
217
TP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
218
TP-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
219
TP-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
220
TP-Correlate_Methylation_vs_mRNA
1
0
0
0
0
221
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
222
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
223
TP-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
224
TP-Correlate_nonDCC_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
225
TP-Correlate_nonDCC_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
226
TP-Correlate_nonDCC_Clinical_vs_CustomEvents
1
0
0
0
0
227
TP-Correlate_nonDCC_Clinical_vs_Methylation
1
0
0
0
0
228
TP-Correlate_nonDCC_Clinical_vs_miRseq
1
0
0
0
0
229
TP-Correlate_nonDCC_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
230
TP-Correlate_nonDCC_Clinical_vs_mRNAseq
1
0
0
0
0
231
TP-Correlate_nonDCC_Clinical_vs_Mutation
1
0
0
0
0
232
TP-Correlate_nonDCC_Clinical_vs_RPPA
1
0
0
0
0
233
TP-expanded_coMutPlot
1
0
0
0
0
234
TP-expanded_coMutPlot
1
0
0
0
0
235
TP-GenerateStickFigures1.5
1
0
0
0
0
236
TP-GenerateStickFigures2.0
1
0
0
0
0
237
TP-GenerateStickFiguresCV
1
0
0
0
0
238
TP-GenerateStickFiguresMerged
1
0
0
0
0
239
TP-Hotnet_preprocess
1
0
0
0
0
240
TP-Hotnet_serial
1
0
0
0
0
241
TP-LegoPlotter1.5
1
0
0
0
0
242
TP-LegoPlotter2.0
1
0
0
0
0
243
TP-LegoPlotterCV
1
0
0
0
0
244
TP-LegoPlotterMerged
1
0
0
0
0
245
TP-MergeMutSigRunResults
1
0
0
0
0
246
TP-Methylation_Clustering_CNMF
1
0
0
0
0
247
TP-Methylation_Preprocess
1
0
0
0
0
248
TP-miR_Clustering_CNMF
1
0
0
0
0
249
TP-miR_Clustering_Consensus
1
0
0
0
0
250
TP-miR_FindDirectTargets
1
0
0
0
0
251
TP-miRseq_Clustering_CNMF
1
0
0
0
0
252
TP-miRseq_Clustering_Consensus
1
0
0
0
0
253
TP-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
254
TP-miRseq_Mature_Clustering_Consensus
1
0
0
0
0
255
TP-miRseq_Mature_Preprocess
1
0
0
0
0
256
TP-miRseq_Preprocess
1
0
0
0
0
257
TP-mRNA_Clustering_CNMF
1
0
0
0
0
258
TP-mRNA_Clustering_Consensus
1
0
0
0
0
259
TP-mRNA_Preprocess_Median
1
0
0
0
0
260
TP-mRNAseq_Clustering_CNMF
1
0
0
0
0
261
TP-mRNAseq_Clustering_Consensus
1
0
0
0
0
262
TP-Mutation_Assessor
1
0
0
0
0
263
TP-Mutation_CHASM
1
0
0
0
0
264
TP-MutSigNozzleReport1.5
1
0
0
0
0
265
TP-MutSigNozzleReport2.0
1
0
0
0
0
266
TP-MutSigNozzleReportCV
1
0
0
0
0
267
TP-MutSigNozzleReportMerged
1
0
0
0
0
268
TP-MutSigPreprocess1.5
1
0
0
0
0
269
TP-MutSigPreprocess2.0
1
0
0
0
0
270
TP-MutSigRun1.5
1
0
0
0
0
271
TP-MutSigRun2.0
1
0
0
0
0
272
TP-MutSigRunCV
1
0
0
0
0
273
TP-Paradigm_mRNA
1
0
0
0
0
274
TP-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
275
TP-Paradigm_Prepare_mRNA
1
0
0
0
0
276
TP-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
277
TP-Paradigm_Prepare_RNASeq
1
0
0
0
0
278
TP-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
279
TP-Paradigm_Preprocess_mRNA
1
0
0
0
0
280
TP-ParadigmPreprocess_mRNA
1
0
0
0
0
281
TP-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
282
TP-Paradigm_Preprocess_RNASeq
1
0
0
0
0
283
TP-ParadigmPreprocess_RNASeq
1
0
0
0
0
284
TP-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
285
TP-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
286
TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
287
TP-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
288
TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
289
TP-Paradigm_RNASeq
1
0
0
0
0
290
TP-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
291
TP-Pathway_FindEnrichedGenes
1
0
0
0
0
292
TP-Pathway_Hotnet_report_serial
1
0
0
0
0
293
TP-Pathway_Paradigm_mRNA
1
0
0
0
0
294
TP-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
295
TP-Pathway_Paradigm_RNASeq
1
0
0
0
0
296
TP-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
297
TP-ProcessCoverageForMutSig1.5
1
0
0
0
0
298
TP-ProcessCoverageForMutSig2.0
1
0
0
0
0
299
TP-RPPA_Clustering_CNMF
1
0
0
0
0
300
TP-RPPA_Clustering_Consensus
1
0
0
0
0
301
TB-Aggregate_AnalysisFeatures
0
1
0
0
0
302
TB-Aggregate_Gene_Status
1
0
0
0
0
303
TB-Aggregate_Molecular_Subtype_Clusters
0
1
0
0
0
304
TB-Append_CustomClinical
0
1
0
0
0
305
TB-CoMut2.0
1
0
0
0
0
306
TB-CoMut2CV
1
0
0
0
0
307
TB-CoMutCV
1
0
0
0
0
308
TB-CopyNumber_Clustering_CNMF
1
0
0
0
0
309
TB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
310
TB-CopyNumber_Gistic2
0
1
0
0
0
311
TB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
312
TB-CopyNumberLowPass_Gistic2
1
0
0
0
0
313
TB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
314
TB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
315
TB-Correlate_Clinical_vs_Methylation
1
0
0
0
0
316
TB-Correlate_Clinical_vs_miR
1
0
0
0
0
317
TB-Correlate_Clinical_vs_miRseq
1
0
0
0
0
318
TB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
319
TB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
320
TB-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
321
TB-Correlate_Clinical_vs_Mutation
1
0
0
0
0
322
TB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
323
TB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
324
TB-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
325
TB-Correlate_Clinical_vs_RPPA
1
0
0
0
0
326
TB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
327
TB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
328
TB-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
329
TB-Correlate_Methylation_vs_mRNA
0
1
0
0
0
330
TB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
331
TB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
332
TB-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
333
TB-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
334
TB-GenerateStickFigures2.0
1
0
0
0
0
335
TB-GenerateStickFigures2CV
1
0
0
0
0
336
TB-GenerateStickFiguresCV
1
0
0
0
0
337
TB-iClusterPlus
1
0
0
0
0
338
TB-LegoPlotter2.0
1
0
0
0
0
339
TB-LegoPlotter2CV
1
0
0
0
0
340
TB-LegoPlotterCV
1
0
0
0
0
341
TB-Methylation_Clustering_CNMF
0
1
0
0
0
342
TB-miR_Clustering_CNMF
1
0
0
0
0
343
TB-miR_Clustering_Consensus_Plus
1
0
0
0
0
344
TB-miR_FindDirectTargets
1
0
0
0
0
345
TB-miRseq_Clustering_CNMF
0
1
0
0
0
346
TB-miRseq_Clustering_Consensus_Plus
0
1
0
0
0
347
TB-miRseq_FindDirectTargets
1
0
0
0
0
348
TB-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
349
TB-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
350
TB-mRNA_Clustering_CNMF
1
0
0
0
0
351
TB-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
352
TB-mRNAseq_Clustering_CNMF
0
1
0
0
0
353
TB-mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
354
TB-Mutation_APOBEC
1
0
0
0
0
355
TB-Mutation_Assessor
1
0
0
0
0
356
TB-Mutation_CHASM
1
0
0
0
0
357
TB-Mutation_CoOccurrence
1
0
0
0
0
358
TB-Mutation_CoOccurrence_Custom
1
0
0
0
0
359
TB-MutSigNozzleReport2.0
1
0
0
0
0
360
TB-MutSigNozzleReport2CV
1
0
0
0
0
361
TB-MutSigNozzleReportCV
1
0
0
0
0
362
TB-MutSigPreprocess2.0
0
1
0
0
0
363
TB-MutSigRun2.0
1
0
0
0
0
364
TB-MutSigRun2CV
0
1
0
0
0
365
TB-MutSigRunCV
0
1
0
0
0
366
TB-Paradigm_mRNA
1
0
0
0
0
367
TB-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
368
TB-Paradigm_Prepare_mRNA
1
0
0
0
0
369
TB-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
370
TB-Paradigm_Prepare_RNASeq
1
0
0
0
0
371
TB-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
372
TB-Paradigm_Preprocess_mRNA
1
0
0
0
0
373
TB-ParadigmPreprocess_mRNA
1
0
0
0
0
374
TB-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
375
TB-ParadigmPreprocess_RNASeq
0
1
0
0
0
376
TB-Paradigm_Preprocess_RNASeq
1
0
0
0
0
377
TB-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
378
TB-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
379
TB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
380
TB-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
381
TB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
382
TB-Paradigm_RNASeq
1
0
0
0
0
383
TB-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
384
TB-Pathway_FindEnrichedGenes
1
0
0
0
0
385
TB-Pathway_GSEA_mRNAseq
1
0
0
0
0
386
TB-Pathway_Hotnet
1
0
0
0
0
387
TB-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
388
TB-Pathway_Paradigm_mRNA
1
0
0
0
0
389
TB-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
390
TB-Pathway_Paradigm_RNASeq
1
0
0
0
0
391
TB-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
392
TB-ProcessCoverageForMutSig2.0
1
0
0
0
0
393
TB-RPPA_Clustering_CNMF
1
0
0
0
0
394
TB-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
395
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
396
NT-Aggregate_Gene_Status
1
0
0
0
0
397
NT-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
398
NT-Append_CustomClinical
0
1
0
0
0
399
NT-CoMut2.0
1
0
0
0
0
400
NT-CoMut2CV
1
0
0
0
0
401
NT-CoMutCV
1
0
0
0
0
402
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
403
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
404
NT-CopyNumber_Gistic2
0
1
0
0
0
405
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
406
NT-CopyNumberLowPass_Gistic2
1
0
0
0
0
407
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
408
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
409
NT-Correlate_Clinical_vs_Methylation
1
0
0
0
0
410
NT-Correlate_Clinical_vs_miR
1
0
0
0
0
411
NT-Correlate_Clinical_vs_miRseq
1
0
0
0
0
412
NT-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
413
NT-Correlate_Clinical_vs_mRNA
1
0
0
0
0
414
NT-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
415
NT-Correlate_Clinical_vs_Mutation
1
0
0
0
0
416
NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
417
NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
418
NT-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
419
NT-Correlate_Clinical_vs_RPPA
1
0
0
0
0
420
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
421
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
422
NT-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
423
NT-Correlate_Methylation_vs_mRNA
1
0
0
0
0
424
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
425
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
426
NT-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
427
NT-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
428
NT-GenerateStickFigures2.0
1
0
0
0
0
429
NT-GenerateStickFigures2CV
1
0
0
0
0
430
NT-GenerateStickFiguresCV
1
0
0
0
0
431
NT-iClusterPlus
1
0
0
0
0
432
NT-LegoPlotter2.0
1
0
0
0
0
433
NT-LegoPlotter2CV
1
0
0
0
0
434
NT-LegoPlotterCV
1
0
0
0
0
435
NT-Methylation_Clustering_CNMF
1
0
0
0
0
436
NT-miR_Clustering_CNMF
1
0
0
0
0
437
NT-miR_Clustering_Consensus_Plus
1
0
0
0
0
438
NT-miR_FindDirectTargets
1
0
0
0
0
439
NT-miRseq_Clustering_CNMF
1
0
0
0
0
440
NT-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
441
NT-miRseq_FindDirectTargets
1
0
0
0
0
442
NT-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
443
NT-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
444
NT-mRNA_Clustering_CNMF
1
0
0
0
0
445
NT-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
446
NT-mRNAseq_Clustering_CNMF
1
0
0
0
0
447
NT-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
448
NT-Mutation_APOBEC
1
0
0
0
0
449
NT-Mutation_Assessor
1
0
0
0
0
450
NT-Mutation_CHASM
1
0
0
0
0
451
NT-Mutation_CoOccurrence
1
0
0
0
0
452
NT-Mutation_CoOccurrence_Custom
1
0
0
0
0
453
NT-MutSigNozzleReport2.0
1
0
0
0
0
454
NT-MutSigNozzleReport2CV
1
0
0
0
0
455
NT-MutSigNozzleReportCV
1
0
0
0
0
456
NT-MutSigPreprocess2.0
1
0
0
0
0
457
NT-MutSigRun2.0
1
0
0
0
0
458
NT-MutSigRun2CV
1
0
0
0
0
459
NT-MutSigRunCV
1
0
0
0
0
460
NT-Paradigm_mRNA
1
0
0
0
0
461
NT-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
462
NT-Paradigm_Prepare_mRNA
1
0
0
0
0
463
NT-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
464
NT-Paradigm_Prepare_RNASeq
1
0
0
0
0
465
NT-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
466
NT-Paradigm_Preprocess_mRNA
1
0
0
0
0
467
NT-ParadigmPreprocess_mRNA
1
0
0
0
0
468
NT-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
469
NT-Paradigm_Preprocess_RNASeq
1
0
0
0
0
470
NT-ParadigmPreprocess_RNASeq
1
0
0
0
0
471
NT-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
472
NT-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
473
NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
474
NT-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
475
NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
476
NT-Paradigm_RNASeq
1
0
0
0
0
477
NT-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
478
NT-Pathway_FindEnrichedGenes
1
0
0
0
0
479
NT-Pathway_GSEA_mRNAseq
1
0
0
0
0
480
NT-Pathway_Hotnet
1
0
0
0
0
481
NT-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
482
NT-Pathway_Paradigm_mRNA
1
0
0
0
0
483
NT-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
484
NT-Pathway_Paradigm_RNASeq
1
0
0
0
0
485
NT-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
486
NT-ProcessCoverageForMutSig2.0
1
0
0
0
0
487
NT-RPPA_Clustering_CNMF
1
0
0
0
0
488
NT-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
Total
402
33
0
48
5
This table generated on Thu Jan 26 11:03:57 2017