Broad GDAC dev Run Status : LIHC

Cohort	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNASeq	miR	miRSeq	RPPA	MAF	rawMAF
LIHC	377	377	370	0	377	0	371	0	372	63	198	373

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Runnable	Successful	Unsuccessful
1	Aggregate_AnalysisFeatures	0	0	0	1
2	Aggregate_Molecular_Subtype_Clusters	0	0	1	0
3	CopyNumber_Clustering_CNMF	0	0	1	0
4	CopyNumber_Clustering_CNMF_thresholded	0	0	1	0
5	CopyNumber_Gistic2	0	0	1	0
6	CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
7	Correlate_Clinical_vs_CopyNumber_Arm	0	0	1	0
8	Correlate_Clinical_vs_CopyNumber_Focal	0	0	1	0
9	Correlate_Clinical_vs_Methylation	1	0	0	0
10	Correlate_Clinical_vs_miR	0	1	0	0
11	Correlate_Clinical_vs_Molecular_Subtypes	0	0	1	0
12	Correlate_Clinical_vs_mRNA	0	0	1	0
13	Correlate_Clinical_vs_Mutation	1	0	0	0
14	Correlate_CopyNumber_vs_miR	0	0	1	0
15	Correlate_CopyNumber_vs_mRNA	0	0	1	0
16	Correlate_Methylation_vs_mRNA	1	0	0	0
17	Correlate_molecularSubtype_vs_CopyNumber_Arm	0	0	1	0
18	Correlate_molecularSubtype_vs_CopyNumber_Focal	0	0	1	0
19	Methylation_Clustering_CNMF	1	0	0	0
20	Methylation_Preprocess	1	0	0	0
21	miR_FindDirectTargets	0	0	1	0
22	miR_Mature_Clustering_CNMF	0	0	1	0
23	miR_Mature_Clustering_Consensus_Plus	0	0	1	0
24	miR_Mature_Preprocess	0	0	1	0
25	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	1	0
26	mRNA_lincRNA_CNMF	0	0	1	0
27	mRNA_Preprocess	0	0	1	0
28	mRNA_protein_coding_Clustering_CNMF	0	0	1	0
29	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	1	0
30	Mutation_APOBEC	0	1	0	0
31	Mutation_CoOccurrence	1	0	0	0
32	Mutation_Signature	0	1	0	0
33	Pathway_GSEA_mRNA	0	0	1	0
34	Aggregate_AnalysisFeatures	0	0	1	0
35	Aggregate_Molecular_Subtype_Clusters	1	0	0	0
36	CopyNumber_Clustering_CNMF	1	0	0	0
37	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
38	CopyNumber_Gistic2	0	0	1	0
39	CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
40	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
41	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
42	Correlate_Clinical_vs_Methylation	1	0	0	0
43	Correlate_Clinical_vs_miR	1	0	0	0
44	Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
45	Correlate_Clinical_vs_mRNA	1	0	0	0
46	Correlate_Clinical_vs_Mutation	1	0	0	0
47	Correlate_CopyNumber_vs_miR	1	0	0	0
48	Correlate_CopyNumber_vs_mRNA	0	0	1	0
49	Correlate_Methylation_vs_mRNA	1	0	0	0
50	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
51	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
52	Methylation_Clustering_CNMF	1	0	0	0
53	Methylation_Preprocess	1	0	0	0
54	miR_FindDirectTargets	1	0	0	0
55	miR_Mature_Clustering_CNMF	1	0	0	0
56	miR_Mature_Clustering_Consensus_Plus	1	0	0	0
57	miR_Mature_Preprocess	0	0	1	0
58	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	0	1
59	mRNA_lincRNA_CNMF	0	0	0	1
60	mRNA_Preprocess	0	0	1	0
61	mRNA_protein_coding_Clustering_CNMF	0	0	0	1
62	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	0	1
63	Mutation_APOBEC	0	1	0	0
64	Mutation_CoOccurrence	0	0	0	1
65	Mutation_Signature	0	1	0	0
66	Pathway_GSEA_mRNA	1	0	0	0
67	Aggregate_AnalysisFeatures	0	0	1	0
68	Aggregate_Molecular_Subtype_Clusters	0	0	1	0
69	CopyNumber_Clustering_CNMF	0	0	1	0
70	CopyNumber_Clustering_CNMF_thresholded	0	0	1	0
71	CopyNumber_Gistic2	0	0	1	0
72	CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
73	Correlate_Clinical_vs_CopyNumber_Arm	0	0	1	0
74	Correlate_Clinical_vs_CopyNumber_Focal	0	0	1	0
75	Correlate_Clinical_vs_Methylation	1	0	0	0
76	Correlate_Clinical_vs_miR	0	1	0	0
77	Correlate_Clinical_vs_Molecular_Subtypes	0	0	1	0
78	Correlate_Clinical_vs_mRNA	0	0	1	0
79	Correlate_Clinical_vs_Mutation	1	0	0	0
80	Correlate_CopyNumber_vs_miR	0	0	1	0
81	Correlate_CopyNumber_vs_mRNA	0	0	1	0
82	Correlate_Methylation_vs_mRNA	1	0	0	0
83	Correlate_molecularSubtype_vs_CopyNumber_Arm	0	0	1	0
84	Correlate_molecularSubtype_vs_CopyNumber_Focal	0	0	1	0
85	Methylation_Clustering_CNMF	1	0	0	0
86	Methylation_Preprocess	1	0	0	0
87	miR_FindDirectTargets	0	0	1	0
88	miR_Mature_Clustering_CNMF	0	0	1	0
89	miR_Mature_Clustering_Consensus_Plus	0	0	1	0
90	miR_Mature_Preprocess	0	0	1	0
91	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	1	0
92	mRNA_lincRNA_CNMF	0	0	1	0
93	mRNA_Preprocess	0	0	1	0
94	mRNA_protein_coding_Clustering_CNMF	0	0	1	0
95	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	1	0
96	Mutation_APOBEC	0	1	0	0
97	Mutation_CoOccurrence	0	0	1	0
98	Mutation_Signature	0	1	0	0
99	Pathway_GSEA_mRNA	0	0	1	0
100	Aggregate_AnalysisFeatures	0	1	0	0
101	Aggregate_Molecular_Subtype_Clusters	0	0	1	0
102	CopyNumber_Clustering_CNMF	1	0	0	0
103	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
104	CopyNumber_Gistic2	0	0	0	1
105	CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
106	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
107	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
108	Correlate_Clinical_vs_Methylation	1	0	0	0
109	Correlate_Clinical_vs_miR	0	1	0	0
110	Correlate_Clinical_vs_Molecular_Subtypes	0	0	1	0
111	Correlate_Clinical_vs_mRNA	0	0	1	0
112	Correlate_Clinical_vs_Mutation	1	0	0	0
113	Correlate_CopyNumber_vs_miR	1	0	0	0
114	Correlate_CopyNumber_vs_mRNA	1	0	0	0
115	Correlate_Methylation_vs_mRNA	1	0	0	0
116	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
117	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
118	Methylation_Clustering_CNMF	1	0	0	0
119	Methylation_Preprocess	1	0	0	0
120	miR_FindDirectTargets	0	0	1	0
121	miR_Mature_Clustering_CNMF	0	0	1	0
122	miR_Mature_Clustering_Consensus_Plus	0	0	1	0
123	miR_Mature_Preprocess	0	0	1	0
124	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	1	0
125	mRNA_lincRNA_CNMF	0	0	1	0
126	mRNA_Preprocess	0	0	1	0
127	mRNA_protein_coding_Clustering_CNMF	0	0	1	0
128	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	1	0
129	Mutation_APOBEC	1	0	0	0
130	Mutation_CoOccurrence	1	0	0	0
131	Mutation_Signature	1	0	0	0
132	Pathway_GSEA_mRNA	0	0	1	0
133	Aggregate_AnalysisFeatures	0	1	0	0
134	Aggregate_Molecular_Subtype_Clusters	1	0	0	0
135	CopyNumber_Clustering_CNMF	1	0	0	0
136	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
137	CopyNumber_Gistic2	0	0	0	1
138	CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
139	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
140	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
141	Correlate_Clinical_vs_Methylation	1	0	0	0
142	Correlate_Clinical_vs_miR	1	0	0	0
143	Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
144	Correlate_Clinical_vs_mRNA	1	0	0	0
145	Correlate_Clinical_vs_Mutation	1	0	0	0
146	Correlate_CopyNumber_vs_miR	1	0	0	0
147	Correlate_CopyNumber_vs_mRNA	1	0	0	0
148	Correlate_Methylation_vs_mRNA	1	0	0	0
149	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
150	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
151	Methylation_Clustering_CNMF	1	0	0	0
152	Methylation_Preprocess	1	0	0	0
153	miR_FindDirectTargets	1	0	0	0
154	miR_Mature_Clustering_CNMF	1	0	0	0
155	miR_Mature_Clustering_Consensus_Plus	1	0	0	0
156	miR_Mature_Preprocess	1	0	0	0
157	mRNA_lincRNA_Clustering_Consensus_Plus	1	0	0	0
158	mRNA_lincRNA_CNMF	1	0	0	0
159	mRNA_Preprocess	1	0	0	0
160	mRNA_protein_coding_Clustering_CNMF	1	0	0	0
161	mRNA_protein_coding_Clustering_Consensus_Plus	1	0	0	0
162	Mutation_APOBEC	1	0	0	0
163	Mutation_CoOccurrence	1	0	0	0
164	Mutation_Signature	1	0	0	0
165	Pathway_GSEA_mRNA	1	0	0	0
166	Aggregate_AnalysisFeatures	0	1	0	0
167	Aggregate_Gene_Status	1	0	0	0
168	Aggregate_Molecular_Subtype_Clusters	0	1	0	0
169	Append_CustomClinical	0	1	0	0
170	CoMut2.0	1	0	0	0
171	CoMut2CV	1	0	0	0
172	CoMutCV	1	0	0	0
173	CopyNumber_Clustering_CNMF	1	0	0	0
174	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
175	CopyNumber_Gistic2	0	1	0	0
176	CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
177	CopyNumberLowPass_Gistic2	1	0	0	0
178	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
179	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
180	Correlate_Clinical_vs_Methylation	1	0	0	0
181	Correlate_Clinical_vs_miR	1	0	0	0
182	Correlate_Clinical_vs_miRseq	1	0	0	0
183	Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
184	Correlate_Clinical_vs_mRNA	1	0	0	0
185	Correlate_Clinical_vs_mRNAseq	1	0	0	0
186	Correlate_Clinical_vs_Mutation	1	0	0	0
187	Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
188	Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
189	Correlate_Clinical_vs_MutationRate	1	0	0	0
190	Correlate_Clinical_vs_RPPA	1	0	0	0
191	Correlate_CopyNumber_vs_miR	1	0	0	0
192	Correlate_CopyNumber_vs_mRNA	1	0	0	0
193	Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
194	Correlate_Methylation_vs_mRNA	0	1	0	0
195	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
196	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
197	Correlate_molecularSubtype_vs_Mutation	1	0	0	0
198	Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
199	GenerateStickFigures2.0	1	0	0	0
200	GenerateStickFigures2CV	1	0	0	0
201	GenerateStickFiguresCV	1	0	0	0
202	iClusterPlus	1	0	0	0
203	LegoPlotter2.0	1	0	0	0
204	LegoPlotter2CV	1	0	0	0
205	LegoPlotterCV	1	0	0	0
206	Methylation_Clustering_CNMF	0	1	0	0
207	miR_Clustering_CNMF	1	0	0	0
208	miR_Clustering_Consensus_Plus	1	0	0	0
209	miR_FindDirectTargets	1	0	0	0
210	miRseq_Clustering_CNMF	0	1	0	0
211	miRseq_Clustering_Consensus_Plus	0	1	0	0
212	miRseq_FindDirectTargets	0	1	0	0
213	miRseq_Mature_Clustering_CNMF	0	1	0	0
214	miRseq_Mature_Clustering_Consensus_Plus	0	1	0	0
215	mRNA_Clustering_CNMF	1	0	0	0
216	mRNA_Clustering_Consensus_Plus	1	0	0	0
217	mRNAseq_Clustering_CNMF	0	1	0	0
218	mRNAseq_Clustering_Consensus_Plus	0	0	1	0
219	Mutation_APOBEC	1	0	0	0
220	Mutation_Assessor	1	0	0	0
221	Mutation_CHASM	1	0	0	0
222	Mutation_CoOccurrence	1	0	0	0
223	Mutation_CoOccurrence_Custom	1	0	0	0
224	MutSigNozzleReport2.0	1	0	0	0
225	MutSigNozzleReport2CV	1	0	0	0
226	MutSigNozzleReportCV	1	0	0	0
227	MutSigPreprocess2.0	1	0	0	0
228	MutSigRun2.0	1	0	0	0
229	MutSigRun2CV	1	0	0	0
230	MutSigRunCV	1	0	0	0
231	Paradigm_mRNA	1	0	0	0
232	Paradigm_mRNA_And_CopyNumber	1	0	0	0
233	Paradigm_Prepare_mRNA	1	0	0	0
234	Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
235	Paradigm_Prepare_RNASeq	1	0	0	0
236	Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
237	Paradigm_Preprocess_mRNA	1	0	0	0
238	ParadigmPreprocess_mRNA	1	0	0	0
239	Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
240	ParadigmPreprocess_RNASeq	0	1	0	0
241	Paradigm_Preprocess_RNASeq	1	0	0	0
242	Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
243	Paradigm_Report_Preprocess_mRNA	1	0	0	0
244	Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
245	Paradigm_Report_Preprocess_RNASeq	1	0	0	0
246	Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
247	Paradigm_RNASeq	1	0	0	0
248	Paradigm_RNASeq_And_Copy_Number	1	0	0	0
249	Pathway_FindEnrichedGenes	1	0	0	0
250	Pathway_GSEA_mRNAseq	1	0	0	0
251	Pathway_Hotnet	1	0	0	0
252	Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
253	Pathway_Paradigm_mRNA	1	0	0	0
254	Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
255	Pathway_Paradigm_RNASeq	1	0	0	0
256	Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
257	ProcessCoverageForMutSig2.0	1	0	0	0
258	RPPA_Clustering_CNMF	0	1	0	0
259	RPPA_Clustering_Consensus_Plus	0	1	0	0
260	TR-Aggregate_AnalysisFeatures	0	1	0	0
261	TR-Aggregate_Gene_Status	1	0	0	0
262	TR-Aggregate_Molecular_Subtype_Clusters	1	0	0	0
263	TR-Append_CustomClinical	1	0	0	0
264	TR-CoMut2.0	1	0	0	0
265	TR-CoMut2CV	1	0	0	0
266	TR-CoMutCV	1	0	0	0
267	TR-CopyNumber_Clustering_CNMF	1	0	0	0
268	TR-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
269	TR-CopyNumber_Gistic2	0	1	0	0
270	TR-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
271	TR-CopyNumberLowPass_Gistic2	1	0	0	0
272	TR-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
273	TR-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
274	TR-Correlate_Clinical_vs_Methylation	1	0	0	0
275	TR-Correlate_Clinical_vs_miR	1	0	0	0
276	TR-Correlate_Clinical_vs_miRseq	1	0	0	0
277	TR-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
278	TR-Correlate_Clinical_vs_mRNA	1	0	0	0
279	TR-Correlate_Clinical_vs_mRNAseq	1	0	0	0
280	TR-Correlate_Clinical_vs_Mutation	1	0	0	0
281	TR-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
282	TR-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
283	TR-Correlate_Clinical_vs_MutationRate	1	0	0	0
284	TR-Correlate_Clinical_vs_RPPA	1	0	0	0
285	TR-Correlate_CopyNumber_vs_miR	1	0	0	0
286	TR-Correlate_CopyNumber_vs_mRNA	1	0	0	0
287	TR-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
288	TR-Correlate_Methylation_vs_mRNA	1	0	0	0
289	TR-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
290	TR-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
291	TR-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
292	TR-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
293	TR-GenerateStickFigures2.0	1	0	0	0
294	TR-GenerateStickFigures2CV	1	0	0	0
295	TR-GenerateStickFiguresCV	1	0	0	0
296	TR-iClusterPlus	1	0	0	0
297	TR-LegoPlotter2.0	1	0	0	0
298	TR-LegoPlotter2CV	1	0	0	0
299	TR-LegoPlotterCV	1	0	0	0
300	TR-Methylation_Clustering_CNMF	0	1	0	0
301	TR-miR_Clustering_CNMF	1	0	0	0
302	TR-miR_Clustering_Consensus_Plus	1	0	0	0
303	TR-miR_FindDirectTargets	1	0	0	0
304	TR-miRseq_Clustering_CNMF	1	0	0	0
305	TR-miRseq_Clustering_Consensus_Plus	1	0	0	0
306	TR-miRseq_FindDirectTargets	1	0	0	0
307	TR-miRseq_Mature_Clustering_CNMF	1	0	0	0
308	TR-miRseq_Mature_Clustering_Consensus_Plus	1	0	0	0
309	TR-mRNA_Clustering_CNMF	1	0	0	0
310	TR-mRNA_Clustering_Consensus_Plus	1	0	0	0
311	TR-mRNAseq_Clustering_CNMF	1	0	0	0
312	TR-mRNAseq_Clustering_Consensus_Plus	1	0	0	0
313	TR-Mutation_APOBEC	1	0	0	0
314	TR-Mutation_Assessor	1	0	0	0
315	TR-Mutation_CHASM	1	0	0	0
316	TR-Mutation_CoOccurrence	1	0	0	0
317	TR-Mutation_CoOccurrence_Custom	1	0	0	0
318	TR-MutSigNozzleReport2.0	1	0	0	0
319	TR-MutSigNozzleReport2CV	1	0	0	0
320	TR-MutSigNozzleReportCV	1	0	0	0
321	TR-MutSigPreprocess2.0	1	0	0	0
322	TR-MutSigRun2.0	1	0	0	0
323	TR-MutSigRun2CV	1	0	0	0
324	TR-MutSigRunCV	1	0	0	0
325	TR-Paradigm_mRNA	1	0	0	0
326	TR-Paradigm_mRNA_And_CopyNumber	1	0	0	0
327	TR-Paradigm_Prepare_mRNA	1	0	0	0
328	TR-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
329	TR-Paradigm_Prepare_RNASeq	1	0	0	0
330	TR-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
331	TR-Paradigm_Preprocess_mRNA	1	0	0	0
332	TR-ParadigmPreprocess_mRNA	1	0	0	0
333	TR-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
334	TR-ParadigmPreprocess_RNASeq	0	1	0	0
335	TR-Paradigm_Preprocess_RNASeq	1	0	0	0
336	TR-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
337	TR-Paradigm_Report_Preprocess_mRNA	1	0	0	0
338	TR-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
339	TR-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
340	TR-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
341	TR-Paradigm_RNASeq	1	0	0	0
342	TR-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
343	TR-Pathway_FindEnrichedGenes	1	0	0	0
344	TR-Pathway_GSEA_mRNAseq	1	0	0	0
345	TR-Pathway_Hotnet	1	0	0	0
346	TR-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
347	TR-Pathway_Paradigm_mRNA	1	0	0	0
348	TR-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
349	TR-Pathway_Paradigm_RNASeq	1	0	0	0
350	TR-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
351	TR-ProcessCoverageForMutSig2.0	1	0	0	0
352	TR-RPPA_Clustering_CNMF	1	0	0	0
353	TR-RPPA_Clustering_Consensus_Plus	1	0	0	0
354	TP-Aggregate_AnalysisFeatures	0	1	0	0
355	TP-Aggregate_Gene_Status	1	0	0	0
356	TP-Aggregate_Molecular_Subtype_Clusters	0	1	0	0
357	TP-Append_CustomClinical	0	1	0	0
358	TP-CoMut2.0	1	0	0	0
359	TP-CoMut2CV	1	0	0	0
360	TP-CoMutCV	1	0	0	0
361	TP-CopyNumber_Clustering_CNMF	1	0	0	0
362	TP-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
363	TP-CopyNumber_Gistic2	0	1	0	0
364	TP-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
365	TP-CopyNumberLowPass_Gistic2	1	0	0	0
366	TP-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
367	TP-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
368	TP-Correlate_Clinical_vs_Methylation	1	0	0	0
369	TP-Correlate_Clinical_vs_miR	1	0	0	0
370	TP-Correlate_Clinical_vs_miRseq	1	0	0	0
371	TP-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
372	TP-Correlate_Clinical_vs_mRNA	1	0	0	0
373	TP-Correlate_Clinical_vs_mRNAseq	1	0	0	0
374	TP-Correlate_Clinical_vs_Mutation	1	0	0	0
375	TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
376	TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
377	TP-Correlate_Clinical_vs_MutationRate	1	0	0	0
378	TP-Correlate_Clinical_vs_RPPA	1	0	0	0
379	TP-Correlate_CopyNumber_vs_miR	1	0	0	0
380	TP-Correlate_CopyNumber_vs_mRNA	1	0	0	0
381	TP-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
382	TP-Correlate_Methylation_vs_mRNA	0	1	0	0
383	TP-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
384	TP-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
385	TP-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
386	TP-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
387	TP-GenerateStickFigures2.0	1	0	0	0
388	TP-GenerateStickFigures2CV	1	0	0	0
389	TP-GenerateStickFiguresCV	1	0	0	0
390	TP-iClusterPlus	1	0	0	0
391	TP-LegoPlotter2.0	1	0	0	0
392	TP-LegoPlotter2CV	1	0	0	0
393	TP-LegoPlotterCV	1	0	0	0
394	TP-Methylation_Clustering_CNMF	0	1	0	0
395	TP-miR_Clustering_CNMF	1	0	0	0
396	TP-miR_Clustering_Consensus_Plus	1	0	0	0
397	TP-miR_FindDirectTargets	1	0	0	0
398	TP-miRseq_Clustering_CNMF	0	1	0	0
399	TP-miRseq_Clustering_Consensus_Plus	0	1	0	0
400	TP-miRseq_FindDirectTargets	0	1	0	0
401	TP-miRseq_Mature_Clustering_CNMF	0	1	0	0
402	TP-miRseq_Mature_Clustering_Consensus_Plus	0	1	0	0
403	TP-mRNA_Clustering_CNMF	1	0	0	0
404	TP-mRNA_Clustering_Consensus_Plus	1	0	0	0
405	TP-mRNAseq_Clustering_CNMF	0	1	0	0
406	TP-mRNAseq_Clustering_Consensus_Plus	0	0	1	0
407	TP-Mutation_APOBEC	1	0	0	0
408	TP-Mutation_Assessor	1	0	0	0
409	TP-Mutation_CHASM	1	0	0	0
410	TP-Mutation_CoOccurrence	1	0	0	0
411	TP-Mutation_CoOccurrence_Custom	1	0	0	0
412	TP-MutSigNozzleReport2.0	1	0	0	0
413	TP-MutSigNozzleReport2CV	1	0	0	0
414	TP-MutSigNozzleReportCV	1	0	0	0
415	TP-MutSigPreprocess2.0	0	1	0	0
416	TP-MutSigRun2.0	1	0	0	0
417	TP-MutSigRun2CV	0	1	0	0
418	TP-MutSigRunCV	0	1	0	0
419	TP-Paradigm_mRNA	1	0	0	0
420	TP-Paradigm_mRNA_And_CopyNumber	1	0	0	0
421	TP-Paradigm_Prepare_mRNA	1	0	0	0
422	TP-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
423	TP-Paradigm_Prepare_RNASeq	1	0	0	0
424	TP-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
425	TP-Paradigm_Preprocess_mRNA	1	0	0	0
426	TP-ParadigmPreprocess_mRNA	1	0	0	0
427	TP-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
428	TP-ParadigmPreprocess_RNASeq	0	1	0	0
429	TP-Paradigm_Preprocess_RNASeq	1	0	0	0
430	TP-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
431	TP-Paradigm_Report_Preprocess_mRNA	1	0	0	0
432	TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
433	TP-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
434	TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
435	TP-Paradigm_RNASeq	1	0	0	0
436	TP-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
437	TP-Pathway_FindEnrichedGenes	1	0	0	0
438	TP-Pathway_GSEA_mRNAseq	1	0	0	0
439	TP-Pathway_Hotnet	1	0	0	0
440	TP-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
441	TP-Pathway_Paradigm_mRNA	1	0	0	0
442	TP-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
443	TP-Pathway_Paradigm_RNASeq	1	0	0	0
444	TP-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
445	TP-ProcessCoverageForMutSig2.0	1	0	0	0
446	TP-RPPA_Clustering_CNMF	0	1	0	0
447	TP-RPPA_Clustering_Consensus_Plus	0	1	0	0
448	NT-Aggregate_AnalysisFeatures	0	1	0	0
449	NT-Aggregate_Gene_Status	1	0	0	0
450	NT-Aggregate_Molecular_Subtype_Clusters	0	1	0	0
451	NT-Append_CustomClinical	0	1	0	0
452	NT-CoMut2.0	1	0	0	0
453	NT-CoMut2CV	1	0	0	0
454	NT-CoMutCV	1	0	0	0
455	NT-CopyNumber_Clustering_CNMF	1	0	0	0
456	NT-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
457	NT-CopyNumber_Gistic2	0	1	0	0
458	NT-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
459	NT-CopyNumberLowPass_Gistic2	1	0	0	0
460	NT-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
461	NT-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
462	NT-Correlate_Clinical_vs_Methylation	1	0	0	0
463	NT-Correlate_Clinical_vs_miR	1	0	0	0
464	NT-Correlate_Clinical_vs_miRseq	1	0	0	0
465	NT-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
466	NT-Correlate_Clinical_vs_mRNA	1	0	0	0
467	NT-Correlate_Clinical_vs_mRNAseq	1	0	0	0
468	NT-Correlate_Clinical_vs_Mutation	1	0	0	0
469	NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
470	NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
471	NT-Correlate_Clinical_vs_MutationRate	1	0	0	0
472	NT-Correlate_Clinical_vs_RPPA	1	0	0	0
473	NT-Correlate_CopyNumber_vs_miR	1	0	0	0
474	NT-Correlate_CopyNumber_vs_mRNA	1	0	0	0
475	NT-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
476	NT-Correlate_Methylation_vs_mRNA	0	1	0	0
477	NT-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
478	NT-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
479	NT-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
480	NT-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
481	NT-GenerateStickFigures2.0	1	0	0	0
482	NT-GenerateStickFigures2CV	1	0	0	0
483	NT-GenerateStickFiguresCV	1	0	0	0
484	NT-iClusterPlus	1	0	0	0
485	NT-LegoPlotter2.0	1	0	0	0
486	NT-LegoPlotter2CV	1	0	0	0
487	NT-LegoPlotterCV	1	0	0	0
488	NT-Methylation_Clustering_CNMF	0	1	0	0
489	NT-miR_Clustering_CNMF	1	0	0	0
490	NT-miR_Clustering_Consensus_Plus	1	0	0	0
491	NT-miR_FindDirectTargets	1	0	0	0
492	NT-miRseq_Clustering_CNMF	0	1	0	0
493	NT-miRseq_Clustering_Consensus_Plus	0	1	0	0
494	NT-miRseq_FindDirectTargets	0	1	0	0
495	NT-miRseq_Mature_Clustering_CNMF	0	1	0	0
496	NT-miRseq_Mature_Clustering_Consensus_Plus	0	1	0	0
497	NT-mRNA_Clustering_CNMF	1	0	0	0
498	NT-mRNA_Clustering_Consensus_Plus	1	0	0	0
499	NT-mRNAseq_Clustering_CNMF	0	1	0	0
500	NT-mRNAseq_Clustering_Consensus_Plus	0	0	1	0
501	NT-Mutation_APOBEC	1	0	0	0
502	NT-Mutation_Assessor	1	0	0	0
503	NT-Mutation_CHASM	1	0	0	0
504	NT-Mutation_CoOccurrence	1	0	0	0
505	NT-Mutation_CoOccurrence_Custom	1	0	0	0
506	NT-MutSigNozzleReport2.0	1	0	0	0
507	NT-MutSigNozzleReport2CV	1	0	0	0
508	NT-MutSigNozzleReportCV	1	0	0	0
509	NT-MutSigPreprocess2.0	1	0	0	0
510	NT-MutSigRun2.0	1	0	0	0
511	NT-MutSigRun2CV	1	0	0	0
512	NT-MutSigRunCV	1	0	0	0
513	NT-Paradigm_mRNA	1	0	0	0
514	NT-Paradigm_mRNA_And_CopyNumber	1	0	0	0
515	NT-Paradigm_Prepare_mRNA	1	0	0	0
516	NT-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
517	NT-Paradigm_Prepare_RNASeq	1	0	0	0
518	NT-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
519	NT-Paradigm_Preprocess_mRNA	1	0	0	0
520	NT-ParadigmPreprocess_mRNA	1	0	0	0
521	NT-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
522	NT-ParadigmPreprocess_RNASeq	0	1	0	0
523	NT-Paradigm_Preprocess_RNASeq	1	0	0	0
524	NT-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
525	NT-Paradigm_Report_Preprocess_mRNA	1	0	0	0
526	NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
527	NT-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
528	NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
529	NT-Paradigm_RNASeq	1	0	0	0
530	NT-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
531	NT-Pathway_FindEnrichedGenes	1	0	0	0
532	NT-Pathway_GSEA_mRNAseq	1	0	0	0
533	NT-Pathway_Hotnet	1	0	0	0
534	NT-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
535	NT-Pathway_Paradigm_mRNA	1	0	0	0
536	NT-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
537	NT-Pathway_Paradigm_RNASeq	1	0	0	0
538	NT-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
539	NT-ProcessCoverageForMutSig2.0	1	0	0	0
540	NT-RPPA_Clustering_CNMF	1	0	0	0
541	NT-RPPA_Clustering_Consensus_Plus	1	0	0	0
542	NB-Aggregate_AnalysisFeatures	0	1	0	0
543	NB-Aggregate_Gene_Status	1	0	0	0
544	NB-Aggregate_Molecular_Subtype_Clusters	1	0	0	0
545	NB-Append_CustomClinical	0	1	0	0
546	NB-CoMut2.0	1	0	0	0
547	NB-CoMut2CV	1	0	0	0
548	NB-CoMutCV	1	0	0	0
549	NB-CopyNumber_Clustering_CNMF	1	0	0	0
550	NB-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
551	NB-CopyNumber_Gistic2	0	1	0	0
552	NB-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
553	NB-CopyNumberLowPass_Gistic2	1	0	0	0
554	NB-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
555	NB-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
556	NB-Correlate_Clinical_vs_Methylation	1	0	0	0
557	NB-Correlate_Clinical_vs_miR	1	0	0	0
558	NB-Correlate_Clinical_vs_miRseq	1	0	0	0
559	NB-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
560	NB-Correlate_Clinical_vs_mRNA	1	0	0	0
561	NB-Correlate_Clinical_vs_mRNAseq	1	0	0	0
562	NB-Correlate_Clinical_vs_Mutation	1	0	0	0
563	NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
564	NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
565	NB-Correlate_Clinical_vs_MutationRate	1	0	0	0
566	NB-Correlate_Clinical_vs_RPPA	1	0	0	0
567	NB-Correlate_CopyNumber_vs_miR	1	0	0	0
568	NB-Correlate_CopyNumber_vs_mRNA	1	0	0	0
569	NB-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
570	NB-Correlate_Methylation_vs_mRNA	1	0	0	0
571	NB-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
572	NB-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
573	NB-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
574	NB-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
575	NB-GenerateStickFigures2.0	1	0	0	0
576	NB-GenerateStickFigures2CV	1	0	0	0
577	NB-GenerateStickFiguresCV	1	0	0	0
578	NB-iClusterPlus	1	0	0	0
579	NB-LegoPlotter2.0	1	0	0	0
580	NB-LegoPlotter2CV	1	0	0	0
581	NB-LegoPlotterCV	1	0	0	0
582	NB-Methylation_Clustering_CNMF	1	0	0	0
583	NB-miR_Clustering_CNMF	1	0	0	0
584	NB-miR_Clustering_Consensus_Plus	1	0	0	0
585	NB-miR_FindDirectTargets	1	0	0	0
586	NB-miRseq_Clustering_CNMF	1	0	0	0
587	NB-miRseq_Clustering_Consensus_Plus	1	0	0	0
588	NB-miRseq_FindDirectTargets	1	0	0	0
589	NB-miRseq_Mature_Clustering_CNMF	1	0	0	0
590	NB-miRseq_Mature_Clustering_Consensus_Plus	1	0	0	0
591	NB-mRNA_Clustering_CNMF	1	0	0	0
592	NB-mRNA_Clustering_Consensus_Plus	1	0	0	0
593	NB-mRNAseq_Clustering_CNMF	1	0	0	0
594	NB-mRNAseq_Clustering_Consensus_Plus	1	0	0	0
595	NB-Mutation_APOBEC	1	0	0	0
596	NB-Mutation_Assessor	1	0	0	0
597	NB-Mutation_CHASM	1	0	0	0
598	NB-Mutation_CoOccurrence	1	0	0	0
599	NB-Mutation_CoOccurrence_Custom	1	0	0	0
600	NB-MutSigNozzleReport2.0	1	0	0	0
601	NB-MutSigNozzleReport2CV	1	0	0	0
602	NB-MutSigNozzleReportCV	1	0	0	0
603	NB-MutSigPreprocess2.0	1	0	0	0
604	NB-MutSigRun2.0	1	0	0	0
605	NB-MutSigRun2CV	1	0	0	0
606	NB-MutSigRunCV	1	0	0	0
607	NB-Paradigm_mRNA	1	0	0	0
608	NB-Paradigm_mRNA_And_CopyNumber	1	0	0	0
609	NB-Paradigm_Prepare_mRNA	1	0	0	0
610	NB-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
611	NB-Paradigm_Prepare_RNASeq	1	0	0	0
612	NB-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
613	NB-Paradigm_Preprocess_mRNA	1	0	0	0
614	NB-ParadigmPreprocess_mRNA	1	0	0	0
615	NB-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
616	NB-Paradigm_Preprocess_RNASeq	1	0	0	0
617	NB-ParadigmPreprocess_RNASeq	1	0	0	0
618	NB-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
619	NB-Paradigm_Report_Preprocess_mRNA	1	0	0	0
620	NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
621	NB-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
622	NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
623	NB-Paradigm_RNASeq	1	0	0	0
624	NB-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
625	NB-Pathway_FindEnrichedGenes	1	0	0	0
626	NB-Pathway_GSEA_mRNAseq	1	0	0	0
627	NB-Pathway_Hotnet	1	0	0	0
628	NB-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
629	NB-Pathway_Paradigm_mRNA	1	0	0	0
630	NB-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
631	NB-Pathway_Paradigm_RNASeq	1	0	0	0
632	NB-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
633	NB-ProcessCoverageForMutSig2.0	1	0	0	0
634	NB-RPPA_Clustering_CNMF	1	0	0	0
635	NB-RPPA_Clustering_Consensus_Plus	1	0	0	0
	Total	493	64	70	8

This table generated on Thu Jan 26 11:03:58 2017

Broad GDAC Analyses Status dev Run for Tumor Type: LIHC

Broad GDAC Analyses Status
dev Run for Tumor Type: LIHC