Broad GDAC Analyses Status
dev Run for Tumor Type: LUSC
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
LUSC
504
504
501
0
503
154
501
0
478
328
178
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
0
0
1
0
2
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
3
CopyNumber_Clustering_CNMF
0
0
0
1
0
4
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
5
CopyNumber_Gistic2
0
0
0
1
0
6
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
7
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
8
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
9
Correlate_Clinical_vs_Methylation
1
0
0
0
0
10
Correlate_Clinical_vs_miR
0
1
0
0
0
11
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
12
Correlate_Clinical_vs_mRNA
0
0
0
1
0
13
Correlate_Clinical_vs_Mutation
1
0
0
0
0
14
Correlate_CopyNumber_vs_miR
0
0
0
1
0
15
Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
16
Correlate_Methylation_vs_mRNA
1
0
0
0
0
17
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
18
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
19
Methylation_Clustering_CNMF
1
0
0
0
0
20
Methylation_Preprocess
1
0
0
0
0
21
miR_FindDirectTargets
0
0
0
1
0
22
miR_Mature_Clustering_CNMF
0
0
0
1
0
23
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
24
miR_Mature_Preprocess
0
0
0
1
0
25
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
26
mRNA_lincRNA_CNMF
0
0
0
1
0
27
mRNA_Preprocess
0
0
0
1
0
28
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
29
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
30
Mutation_APOBEC
0
1
0
0
0
31
Mutation_CoOccurrence
0
0
0
1
0
32
Mutation_Signature
0
1
0
0
0
33
Pathway_GSEA_mRNA
0
0
0
1
0
34
Aggregate_AnalysisFeatures
0
0
0
1
0
35
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
36
CopyNumber_Clustering_CNMF
0
0
0
1
0
37
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
38
CopyNumber_Gistic2
0
0
0
1
0
39
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
40
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
41
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
42
Correlate_Clinical_vs_Methylation
1
0
0
0
0
43
Correlate_Clinical_vs_miR
0
1
0
0
0
44
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
45
Correlate_Clinical_vs_mRNA
0
0
0
1
0
46
Correlate_Clinical_vs_Mutation
1
0
0
0
0
47
Correlate_CopyNumber_vs_miR
0
0
0
1
0
48
Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
49
Correlate_Methylation_vs_mRNA
1
0
0
0
0
50
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
51
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
52
Methylation_Clustering_CNMF
1
0
0
0
0
53
Methylation_Preprocess
1
0
0
0
0
54
miR_FindDirectTargets
0
0
0
1
0
55
miR_Mature_Clustering_CNMF
0
0
0
1
0
56
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
57
miR_Mature_Preprocess
0
0
0
1
0
58
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
59
mRNA_lincRNA_CNMF
0
0
0
1
0
60
mRNA_Preprocess
0
0
0
1
0
61
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
62
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
63
Mutation_APOBEC
0
1
0
0
0
64
Mutation_CoOccurrence
0
0
0
1
0
65
Mutation_Signature
0
1
0
0
0
66
Pathway_GSEA_mRNA
0
0
0
0
1
67
Aggregate_AnalysisFeatures
0
1
0
0
0
68
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
69
CopyNumber_Clustering_CNMF
1
0
0
0
0
70
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
71
CopyNumber_Gistic2
0
0
0
0
1
72
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
73
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
74
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
75
Correlate_Clinical_vs_Methylation
1
0
0
0
0
76
Correlate_Clinical_vs_miR
0
1
0
0
0
77
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
78
Correlate_Clinical_vs_mRNA
0
0
0
1
0
79
Correlate_Clinical_vs_Mutation
1
0
0
0
0
80
Correlate_CopyNumber_vs_miR
1
0
0
0
0
81
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
82
Correlate_Methylation_vs_mRNA
1
0
0
0
0
83
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
84
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
85
Methylation_Clustering_CNMF
1
0
0
0
0
86
Methylation_Preprocess
1
0
0
0
0
87
miR_FindDirectTargets
0
0
0
1
0
88
miR_Mature_Clustering_CNMF
0
0
0
1
0
89
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
90
miR_Mature_Preprocess
0
0
0
1
0
91
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
92
mRNA_lincRNA_CNMF
0
0
0
1
0
93
mRNA_Preprocess
0
0
0
1
0
94
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
95
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
96
Mutation_APOBEC
1
0
0
0
0
97
Mutation_CoOccurrence
1
0
0
0
0
98
Mutation_Signature
1
0
0
0
0
99
Pathway_GSEA_mRNA
0
0
0
0
1
100
Aggregate_AnalysisFeatures
0
1
0
0
0
101
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
102
CopyNumber_Clustering_CNMF
1
0
0
0
0
103
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
104
CopyNumber_Gistic2
0
0
0
0
1
105
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
106
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
107
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
108
Correlate_Clinical_vs_Methylation
1
0
0
0
0
109
Correlate_Clinical_vs_miR
1
0
0
0
0
110
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
111
Correlate_Clinical_vs_mRNA
1
0
0
0
0
112
Correlate_Clinical_vs_Mutation
1
0
0
0
0
113
Correlate_CopyNumber_vs_miR
1
0
0
0
0
114
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
115
Correlate_Methylation_vs_mRNA
1
0
0
0
0
116
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
117
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
118
Methylation_Clustering_CNMF
1
0
0
0
0
119
Methylation_Preprocess
1
0
0
0
0
120
miR_FindDirectTargets
1
0
0
0
0
121
miR_Mature_Clustering_CNMF
1
0
0
0
0
122
miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
123
miR_Mature_Preprocess
1
0
0
0
0
124
mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
125
mRNA_lincRNA_CNMF
1
0
0
0
0
126
mRNA_Preprocess
1
0
0
0
0
127
mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
128
mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
129
Mutation_APOBEC
1
0
0
0
0
130
Mutation_CoOccurrence
1
0
0
0
0
131
Mutation_Signature
1
0
0
0
0
132
Pathway_GSEA_mRNA
1
0
0
0
0
133
Aggregate_AnalysisFeatures
0
1
0
0
0
134
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
135
CopyNumber_Clustering_CNMF
1
0
0
0
0
136
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
137
CopyNumber_Gistic2
1
0
0
0
0
138
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
139
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
140
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
141
Correlate_Clinical_vs_Methylation
1
0
0
0
0
142
Correlate_Clinical_vs_miR
1
0
0
0
0
143
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
144
Correlate_Clinical_vs_mRNA
1
0
0
0
0
145
Correlate_Clinical_vs_Mutation
1
0
0
0
0
146
Correlate_CopyNumber_vs_miR
1
0
0
0
0
147
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
148
Correlate_Methylation_vs_mRNA
1
0
0
0
0
149
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
150
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
151
Methylation_Clustering_CNMF
1
0
0
0
0
152
Methylation_Preprocess
1
0
0
0
0
153
miR_FindDirectTargets
1
0
0
0
0
154
miR_Mature_Clustering_CNMF
1
0
0
0
0
155
miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
156
miR_Mature_Preprocess
1
0
0
0
0
157
mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
158
mRNA_lincRNA_CNMF
1
0
0
0
0
159
mRNA_Preprocess
1
0
0
0
0
160
mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
161
mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
162
Mutation_APOBEC
0
1
0
0
0
163
Mutation_CoOccurrence
1
0
0
0
0
164
Mutation_Signature
0
1
0
0
0
165
Pathway_GSEA_mRNA
1
0
0
0
0
166
Aggregate_AnalysisFeatures
0
1
0
0
0
167
Aggregate_Gene_Status
1
0
0
0
0
168
Aggregate_Molecular_Subtype_Clusters
0
1
0
0
0
169
Append_CustomClinical
0
1
0
0
0
170
CoMut2.0
1
0
0
0
0
171
CoMut2CV
1
0
0
0
0
172
CoMutCV
1
0
0
0
0
173
CopyNumber_Clustering_CNMF
1
0
0
0
0
174
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
175
CopyNumber_Gistic2
0
1
0
0
0
176
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
177
CopyNumberLowPass_Gistic2
1
0
0
0
0
178
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
179
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
180
Correlate_Clinical_vs_Methylation
1
0
0
0
0
181
Correlate_Clinical_vs_miR
1
0
0
0
0
182
Correlate_Clinical_vs_miRseq
1
0
0
0
0
183
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
184
Correlate_Clinical_vs_mRNA
1
0
0
0
0
185
Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
186
Correlate_Clinical_vs_Mutation
1
0
0
0
0
187
Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
188
Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
189
Correlate_Clinical_vs_MutationRate
1
0
0
0
0
190
Correlate_Clinical_vs_RPPA
1
0
0
0
0
191
Correlate_CopyNumber_vs_miR
1
0
0
0
0
192
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
193
Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
194
Correlate_Methylation_vs_mRNA
0
1
0
0
0
195
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
196
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
197
Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
198
Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
199
GenerateStickFigures2.0
1
0
0
0
0
200
GenerateStickFigures2CV
1
0
0
0
0
201
GenerateStickFiguresCV
1
0
0
0
0
202
iClusterPlus
1
0
0
0
0
203
LegoPlotter2.0
1
0
0
0
0
204
LegoPlotter2CV
1
0
0
0
0
205
LegoPlotterCV
1
0
0
0
0
206
Methylation_Clustering_CNMF
0
1
0
0
0
207
miR_Clustering_CNMF
1
0
0
0
0
208
miR_Clustering_Consensus_Plus
1
0
0
0
0
209
miR_FindDirectTargets
1
0
0
0
0
210
miRseq_Clustering_CNMF
0
1
0
0
0
211
miRseq_Clustering_Consensus_Plus
0
1
0
0
0
212
miRseq_FindDirectTargets
0
1
0
0
0
213
miRseq_Mature_Clustering_CNMF
0
1
0
0
0
214
miRseq_Mature_Clustering_Consensus_Plus
0
1
0
0
0
215
mRNA_Clustering_CNMF
0
1
0
0
0
216
mRNA_Clustering_Consensus_Plus
0
1
0
0
0
217
mRNAseq_Clustering_CNMF
0
1
0
0
0
218
mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
219
Mutation_APOBEC
1
0
0
0
0
220
Mutation_Assessor
1
0
0
0
0
221
Mutation_CHASM
1
0
0
0
0
222
Mutation_CoOccurrence
1
0
0
0
0
223
Mutation_CoOccurrence_Custom
1
0
0
0
0
224
MutSigNozzleReport2.0
1
0
0
0
0
225
MutSigNozzleReport2CV
1
0
0
0
0
226
MutSigNozzleReportCV
1
0
0
0
0
227
MutSigPreprocess2.0
1
0
0
0
0
228
MutSigRun2.0
1
0
0
0
0
229
MutSigRun2CV
1
0
0
0
0
230
MutSigRunCV
1
0
0
0
0
231
Paradigm_mRNA
1
0
0
0
0
232
Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
233
Paradigm_Prepare_mRNA
1
0
0
0
0
234
Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
235
Paradigm_Prepare_RNASeq
1
0
0
0
0
236
Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
237
ParadigmPreprocess_mRNA
0
1
0
0
0
238
Paradigm_Preprocess_mRNA
1
0
0
0
0
239
Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
240
ParadigmPreprocess_RNASeq
0
1
0
0
0
241
Paradigm_Preprocess_RNASeq
1
0
0
0
0
242
Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
243
Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
244
Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
245
Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
246
Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
247
Paradigm_RNASeq
1
0
0
0
0
248
Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
249
Pathway_FindEnrichedGenes
1
0
0
0
0
250
Pathway_GSEA_mRNAseq
1
0
0
0
0
251
Pathway_Hotnet
1
0
0
0
0
252
Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
253
Pathway_Paradigm_mRNA
1
0
0
0
0
254
Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
255
Pathway_Paradigm_RNASeq
1
0
0
0
0
256
Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
257
ProcessCoverageForMutSig2.0
1
0
0
0
0
258
RPPA_Clustering_CNMF
0
1
0
0
0
259
RPPA_Clustering_Consensus_Plus
0
1
0
0
0
260
TP-Aggregate_AnalysisFeatures
0
1
0
0
0
261
TP-Aggregate_Gene_Status
1
0
0
0
0
262
TP-Aggregate_Molecular_Subtype_Clusters
0
1
0
0
0
263
TP-Append_CustomClinical
0
1
0
0
0
264
TP-CoMut2.0
1
0
0
0
0
265
TP-CoMut2CV
1
0
0
0
0
266
TP-CoMutCV
1
0
0
0
0
267
TP-CopyNumber_Clustering_CNMF
1
0
0
0
0
268
TP-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
269
TP-CopyNumber_Gistic2
0
1
0
0
0
270
TP-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
271
TP-CopyNumberLowPass_Gistic2
1
0
0
0
0
272
TP-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
273
TP-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
274
TP-Correlate_Clinical_vs_Methylation
1
0
0
0
0
275
TP-Correlate_Clinical_vs_miR
1
0
0
0
0
276
TP-Correlate_Clinical_vs_miRseq
1
0
0
0
0
277
TP-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
278
TP-Correlate_Clinical_vs_mRNA
1
0
0
0
0
279
TP-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
280
TP-Correlate_Clinical_vs_Mutation
1
0
0
0
0
281
TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
282
TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
283
TP-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
284
TP-Correlate_Clinical_vs_RPPA
1
0
0
0
0
285
TP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
286
TP-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
287
TP-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
288
TP-Correlate_Methylation_vs_mRNA
0
1
0
0
0
289
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
290
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
291
TP-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
292
TP-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
293
TP-GenerateStickFigures2.0
1
0
0
0
0
294
TP-GenerateStickFigures2CV
1
0
0
0
0
295
TP-GenerateStickFiguresCV
1
0
0
0
0
296
TP-iClusterPlus
1
0
0
0
0
297
TP-LegoPlotter2.0
1
0
0
0
0
298
TP-LegoPlotter2CV
1
0
0
0
0
299
TP-LegoPlotterCV
1
0
0
0
0
300
TP-Methylation_Clustering_CNMF
0
1
0
0
0
301
TP-miR_Clustering_CNMF
1
0
0
0
0
302
TP-miR_Clustering_Consensus_Plus
1
0
0
0
0
303
TP-miR_FindDirectTargets
1
0
0
0
0
304
TP-miRseq_Clustering_CNMF
0
1
0
0
0
305
TP-miRseq_Clustering_Consensus_Plus
0
1
0
0
0
306
TP-miRseq_FindDirectTargets
0
1
0
0
0
307
TP-miRseq_Mature_Clustering_CNMF
0
1
0
0
0
308
TP-miRseq_Mature_Clustering_Consensus_Plus
0
1
0
0
0
309
TP-mRNA_Clustering_CNMF
0
1
0
0
0
310
TP-mRNA_Clustering_Consensus_Plus
0
1
0
0
0
311
TP-mRNAseq_Clustering_CNMF
0
1
0
0
0
312
TP-mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
313
TP-Mutation_APOBEC
1
0
0
0
0
314
TP-Mutation_Assessor
1
0
0
0
0
315
TP-Mutation_CHASM
1
0
0
0
0
316
TP-Mutation_CoOccurrence
1
0
0
0
0
317
TP-Mutation_CoOccurrence_Custom
1
0
0
0
0
318
TP-MutSigNozzleReport2.0
1
0
0
0
0
319
TP-MutSigNozzleReport2CV
1
0
0
0
0
320
TP-MutSigNozzleReportCV
1
0
0
0
0
321
TP-MutSigPreprocess2.0
0
1
0
0
0
322
TP-MutSigRun2.0
1
0
0
0
0
323
TP-MutSigRun2CV
0
1
0
0
0
324
TP-MutSigRunCV
0
1
0
0
0
325
TP-Paradigm_mRNA
1
0
0
0
0
326
TP-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
327
TP-Paradigm_Prepare_mRNA
1
0
0
0
0
328
TP-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
329
TP-Paradigm_Prepare_RNASeq
1
0
0
0
0
330
TP-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
331
TP-ParadigmPreprocess_mRNA
0
1
0
0
0
332
TP-Paradigm_Preprocess_mRNA
1
0
0
0
0
333
TP-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
334
TP-ParadigmPreprocess_RNASeq
0
1
0
0
0
335
TP-Paradigm_Preprocess_RNASeq
1
0
0
0
0
336
TP-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
337
TP-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
338
TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
339
TP-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
340
TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
341
TP-Paradigm_RNASeq
1
0
0
0
0
342
TP-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
343
TP-Pathway_FindEnrichedGenes
1
0
0
0
0
344
TP-Pathway_GSEA_mRNAseq
1
0
0
0
0
345
TP-Pathway_Hotnet
1
0
0
0
0
346
TP-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
347
TP-Pathway_Paradigm_mRNA
1
0
0
0
0
348
TP-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
349
TP-Pathway_Paradigm_RNASeq
1
0
0
0
0
350
TP-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
351
TP-ProcessCoverageForMutSig2.0
1
0
0
0
0
352
TP-RPPA_Clustering_CNMF
0
1
0
0
0
353
TP-RPPA_Clustering_Consensus_Plus
0
1
0
0
0
354
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
355
NT-Aggregate_Gene_Status
1
0
0
0
0
356
NT-Aggregate_Molecular_Subtype_Clusters
0
1
0
0
0
357
NT-Append_CustomClinical
0
1
0
0
0
358
NT-CoMut2.0
1
0
0
0
0
359
NT-CoMut2CV
1
0
0
0
0
360
NT-CoMutCV
1
0
0
0
0
361
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
362
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
363
NT-CopyNumber_Gistic2
0
1
0
0
0
364
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
365
NT-CopyNumberLowPass_Gistic2
1
0
0
0
0
366
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
367
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
368
NT-Correlate_Clinical_vs_Methylation
1
0
0
0
0
369
NT-Correlate_Clinical_vs_miR
1
0
0
0
0
370
NT-Correlate_Clinical_vs_miRseq
1
0
0
0
0
371
NT-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
372
NT-Correlate_Clinical_vs_mRNA
1
0
0
0
0
373
NT-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
374
NT-Correlate_Clinical_vs_Mutation
1
0
0
0
0
375
NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
376
NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
377
NT-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
378
NT-Correlate_Clinical_vs_RPPA
1
0
0
0
0
379
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
380
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
381
NT-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
382
NT-Correlate_Methylation_vs_mRNA
0
1
0
0
0
383
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
384
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
385
NT-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
386
NT-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
387
NT-GenerateStickFigures2.0
1
0
0
0
0
388
NT-GenerateStickFigures2CV
1
0
0
0
0
389
NT-GenerateStickFiguresCV
1
0
0
0
0
390
NT-iClusterPlus
1
0
0
0
0
391
NT-LegoPlotter2.0
1
0
0
0
0
392
NT-LegoPlotter2CV
1
0
0
0
0
393
NT-LegoPlotterCV
1
0
0
0
0
394
NT-Methylation_Clustering_CNMF
0
1
0
0
0
395
NT-miR_Clustering_CNMF
1
0
0
0
0
396
NT-miR_Clustering_Consensus_Plus
1
0
0
0
0
397
NT-miR_FindDirectTargets
1
0
0
0
0
398
NT-miRseq_Clustering_CNMF
0
1
0
0
0
399
NT-miRseq_Clustering_Consensus_Plus
0
1
0
0
0
400
NT-miRseq_FindDirectTargets
0
1
0
0
0
401
NT-miRseq_Mature_Clustering_CNMF
0
1
0
0
0
402
NT-miRseq_Mature_Clustering_Consensus_Plus
0
1
0
0
0
403
NT-mRNA_Clustering_CNMF
1
0
0
0
0
404
NT-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
405
NT-mRNAseq_Clustering_CNMF
0
1
0
0
0
406
NT-mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
407
NT-Mutation_APOBEC
1
0
0
0
0
408
NT-Mutation_Assessor
1
0
0
0
0
409
NT-Mutation_CHASM
1
0
0
0
0
410
NT-Mutation_CoOccurrence
1
0
0
0
0
411
NT-Mutation_CoOccurrence_Custom
1
0
0
0
0
412
NT-MutSigNozzleReport2.0
1
0
0
0
0
413
NT-MutSigNozzleReport2CV
1
0
0
0
0
414
NT-MutSigNozzleReportCV
1
0
0
0
0
415
NT-MutSigPreprocess2.0
1
0
0
0
0
416
NT-MutSigRun2.0
1
0
0
0
0
417
NT-MutSigRun2CV
1
0
0
0
0
418
NT-MutSigRunCV
1
0
0
0
0
419
NT-Paradigm_mRNA
1
0
0
0
0
420
NT-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
421
NT-Paradigm_Prepare_mRNA
1
0
0
0
0
422
NT-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
423
NT-Paradigm_Prepare_RNASeq
1
0
0
0
0
424
NT-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
425
NT-Paradigm_Preprocess_mRNA
1
0
0
0
0
426
NT-ParadigmPreprocess_mRNA
1
0
0
0
0
427
NT-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
428
NT-ParadigmPreprocess_RNASeq
0
1
0
0
0
429
NT-Paradigm_Preprocess_RNASeq
1
0
0
0
0
430
NT-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
431
NT-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
432
NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
433
NT-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
434
NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
435
NT-Paradigm_RNASeq
1
0
0
0
0
436
NT-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
437
NT-Pathway_FindEnrichedGenes
1
0
0
0
0
438
NT-Pathway_GSEA_mRNAseq
1
0
0
0
0
439
NT-Pathway_Hotnet
1
0
0
0
0
440
NT-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
441
NT-Pathway_Paradigm_mRNA
1
0
0
0
0
442
NT-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
443
NT-Pathway_Paradigm_RNASeq
1
0
0
0
0
444
NT-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
445
NT-ProcessCoverageForMutSig2.0
1
0
0
0
0
446
NT-RPPA_Clustering_CNMF
1
0
0
0
0
447
NT-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
448
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
449
NB-Aggregate_Gene_Status
1
0
0
0
0
450
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
451
NB-Append_CustomClinical
0
1
0
0
0
452
NB-CoMut2.0
1
0
0
0
0
453
NB-CoMut2CV
1
0
0
0
0
454
NB-CoMutCV
1
0
0
0
0
455
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
456
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
457
NB-CopyNumber_Gistic2
0
1
0
0
0
458
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
459
NB-CopyNumberLowPass_Gistic2
1
0
0
0
0
460
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
461
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
462
NB-Correlate_Clinical_vs_Methylation
1
0
0
0
0
463
NB-Correlate_Clinical_vs_miR
1
0
0
0
0
464
NB-Correlate_Clinical_vs_miRseq
1
0
0
0
0
465
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
466
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
467
NB-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
468
NB-Correlate_Clinical_vs_Mutation
1
0
0
0
0
469
NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
470
NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
471
NB-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
472
NB-Correlate_Clinical_vs_RPPA
1
0
0
0
0
473
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
474
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
475
NB-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
476
NB-Correlate_Methylation_vs_mRNA
1
0
0
0
0
477
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
478
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
479
NB-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
480
NB-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
481
NB-GenerateStickFigures2.0
1
0
0
0
0
482
NB-GenerateStickFigures2CV
1
0
0
0
0
483
NB-GenerateStickFiguresCV
1
0
0
0
0
484
NB-iClusterPlus
1
0
0
0
0
485
NB-LegoPlotter2.0
1
0
0
0
0
486
NB-LegoPlotter2CV
1
0
0
0
0
487
NB-LegoPlotterCV
1
0
0
0
0
488
NB-Methylation_Clustering_CNMF
1
0
0
0
0
489
NB-miR_Clustering_CNMF
1
0
0
0
0
490
NB-miR_Clustering_Consensus_Plus
1
0
0
0
0
491
NB-miR_FindDirectTargets
1
0
0
0
0
492
NB-miRseq_Clustering_CNMF
1
0
0
0
0
493
NB-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
494
NB-miRseq_FindDirectTargets
1
0
0
0
0
495
NB-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
496
NB-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
497
NB-mRNA_Clustering_CNMF
1
0
0
0
0
498
NB-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
499
NB-mRNAseq_Clustering_CNMF
1
0
0
0
0
500
NB-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
501
NB-Mutation_APOBEC
1
0
0
0
0
502
NB-Mutation_Assessor
1
0
0
0
0
503
NB-Mutation_CHASM
1
0
0
0
0
504
NB-Mutation_CoOccurrence
1
0
0
0
0
505
NB-Mutation_CoOccurrence_Custom
1
0
0
0
0
506
NB-MutSigNozzleReport2.0
1
0
0
0
0
507
NB-MutSigNozzleReport2CV
1
0
0
0
0
508
NB-MutSigNozzleReportCV
1
0
0
0
0
509
NB-MutSigPreprocess2.0
1
0
0
0
0
510
NB-MutSigRun2.0
1
0
0
0
0
511
NB-MutSigRun2CV
1
0
0
0
0
512
NB-MutSigRunCV
1
0
0
0
0
513
NB-Paradigm_mRNA
1
0
0
0
0
514
NB-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
515
NB-Paradigm_Prepare_mRNA
1
0
0
0
0
516
NB-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
517
NB-Paradigm_Prepare_RNASeq
1
0
0
0
0
518
NB-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
519
NB-Paradigm_Preprocess_mRNA
1
0
0
0
0
520
NB-ParadigmPreprocess_mRNA
1
0
0
0
0
521
NB-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
522
NB-Paradigm_Preprocess_RNASeq
1
0
0
0
0
523
NB-ParadigmPreprocess_RNASeq
1
0
0
0
0
524
NB-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
525
NB-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
526
NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
527
NB-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
528
NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
529
NB-Paradigm_RNASeq
1
0
0
0
0
530
NB-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
531
NB-Pathway_FindEnrichedGenes
1
0
0
0
0
532
NB-Pathway_GSEA_mRNAseq
1
0
0
0
0
533
NB-Pathway_Hotnet
1
0
0
0
0
534
NB-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
535
NB-Pathway_Paradigm_mRNA
1
0
0
0
0
536
NB-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
537
NB-Pathway_Paradigm_RNASeq
1
0
0
0
0
538
NB-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
539
NB-ProcessCoverageForMutSig2.0
1
0
0
0
0
540
NB-RPPA_Clustering_CNMF
1
0
0
0
0
541
NB-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
Total
406
67
0
64
4
This table generated on Thu Jan 26 11:04:02 2017