Broad GDAC Analyses Status
dev Run for Tumor Type: PANCAN12
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_Gene_Status
1
0
0
0
0
2
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
3
Append_CustomClinical
0
1
0
0
0
4
CoMut1.5
1
0
0
0
0
5
CoMut2.0
1
0
0
0
0
6
CoMut2CV
1
0
0
0
0
7
CoMutCV
1
0
0
0
0
8
CopyNumber_Clustering_CNMF
1
0
0
0
0
9
CopyNumber_Gistic2
0
1
0
0
0
10
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
11
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
12
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
13
Correlate_Clinical_vs_Methylation
1
0
0
0
0
14
Correlate_Clinical_vs_miR
1
0
0
0
0
15
Correlate_Clinical_vs_miRseq
1
0
0
0
0
16
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
17
Correlate_Clinical_vs_mRNA
1
0
0
0
0
18
Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
19
Correlate_Clinical_vs_Mutation
1
0
0
0
0
20
Correlate_Clinical_vs_RPPA
1
0
0
0
0
21
Correlate_CopyNumber_vs_miR
1
0
0
0
0
22
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
23
Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
24
Correlate_Methylation_vs_mRNA
1
0
0
0
0
25
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
26
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
27
Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
28
expanded_coMutPlot
1
0
0
0
0
29
GenerateStickFigures1.5
1
0
0
0
0
30
GenerateStickFigures2.0
1
0
0
0
0
31
GenerateStickFigures2CV
1
0
0
0
0
32
GenerateStickFiguresCV
1
0
0
0
0
33
LegoPlotter1.5
1
0
0
0
0
34
LegoPlotter2.0
1
0
0
0
0
35
LegoPlotter2CV
1
0
0
0
0
36
LegoPlotterCV
1
0
0
0
0
37
Methylation_Clustering_CNMF
1
0
0
0
0
38
Methylation_Preprocess
0
1
0
0
0
39
miR_Clustering_CNMF
0
1
0
0
0
40
miR_Clustering_Consensus
0
1
0
0
0
41
miR_FindDirectTargets
0
1
0
0
0
42
miRseq_Clustering_CNMF
1
0
0
0
0
43
miRseq_Clustering_Consensus
1
0
0
0
0
44
miRseq_Mature_Clustering_CNMF
1
0
0
0
0
45
miRseq_Mature_Clustering_Consensus
1
0
0
0
0
46
miRseq_Mature_Preprocess
0
1
0
0
0
47
miRseq_Preprocess
1
0
0
0
0
48
mRNA_Clustering_CNMF
1
0
0
0
0
49
mRNA_Clustering_Consensus
1
0
0
0
0
50
mRNA_Preprocess_Median
0
1
0
0
0
51
mRNAseq_Clustering_CNMF
1
0
0
0
0
52
mRNAseq_Clustering_Consensus
1
0
0
0
0
53
Mutation_Assessor
1
0
0
0
0
54
Mutation_CHASM
1
0
0
0
0
55
MutSigNozzleReport1.5
1
0
0
0
0
56
MutSigNozzleReport2.0
1
0
0
0
0
57
MutSigNozzleReport2CV
1
0
0
0
0
58
MutSigNozzleReportCV
1
0
0
0
0
59
MutSigPreprocess1.5
1
0
0
0
0
60
MutSigPreprocess2.0
1
0
0
0
0
61
MutSigRun1.5
1
0
0
0
0
62
MutSigRun2.0
1
0
0
0
0
63
MutSigRun2CV
1
0
0
0
0
64
MutSigRunCV
1
0
0
0
0
65
Paradigm_mRNA
1
0
0
0
0
66
Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
67
Paradigm_Prepare_mRNA
1
0
0
0
0
68
Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
69
Paradigm_Prepare_RNASeq
1
0
0
0
0
70
Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
71
ParadigmPreprocess_mRNA
0
1
0
0
0
72
Paradigm_Preprocess_mRNA
1
0
0
0
0
73
Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
74
Paradigm_Preprocess_RNASeq
1
0
0
0
0
75
ParadigmPreprocess_RNASeq
1
0
0
0
0
76
Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
77
Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
78
Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
79
Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
80
Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
81
Paradigm_RNASeq
1
0
0
0
0
82
Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
83
Pathway_FindEnrichedGenes
1
0
0
0
0
84
Pathway_Hotnet
1
0
0
0
0
85
Pathway_Paradigm_mRNA
1
0
0
0
0
86
Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
87
Pathway_Paradigm_RNASeq
1
0
0
0
0
88
Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
89
ProcessCoverageForMutSig1.5
1
0
0
0
0
90
ProcessCoverageForMutSig2.0
1
0
0
0
0
91
RPPA_Clustering_CNMF
1
0
0
0
0
92
RPPA_Clustering_Consensus
1
0
0
0
0
93
TR-Aggregate_Gene_Status
1
0
0
0
0
94
TR-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
95
TR-Append_CustomClinical
0
1
0
0
0
96
TR-CoMut1.5
1
0
0
0
0
97
TR-CoMut2.0
1
0
0
0
0
98
TR-CoMut2CV
1
0
0
0
0
99
TR-CoMutCV
1
0
0
0
0
100
TR-CopyNumber_Clustering_CNMF
1
0
0
0
0
101
TR-CopyNumber_Gistic2
0
1
0
0
0
102
TR-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
103
TR-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
104
TR-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
105
TR-Correlate_Clinical_vs_Methylation
1
0
0
0
0
106
TR-Correlate_Clinical_vs_miR
1
0
0
0
0
107
TR-Correlate_Clinical_vs_miRseq
1
0
0
0
0
108
TR-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
109
TR-Correlate_Clinical_vs_mRNA
1
0
0
0
0
110
TR-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
111
TR-Correlate_Clinical_vs_Mutation
1
0
0
0
0
112
TR-Correlate_Clinical_vs_RPPA
1
0
0
0
0
113
TR-Correlate_CopyNumber_vs_miR
1
0
0
0
0
114
TR-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
115
TR-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
116
TR-Correlate_Methylation_vs_mRNA
1
0
0
0
0
117
TR-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
118
TR-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
119
TR-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
120
TR-expanded_coMutPlot
1
0
0
0
0
121
TR-GenerateStickFigures1.5
1
0
0
0
0
122
TR-GenerateStickFigures2.0
1
0
0
0
0
123
TR-GenerateStickFigures2CV
1
0
0
0
0
124
TR-GenerateStickFiguresCV
1
0
0
0
0
125
TR-LegoPlotter1.5
1
0
0
0
0
126
TR-LegoPlotter2.0
1
0
0
0
0
127
TR-LegoPlotter2CV
1
0
0
0
0
128
TR-LegoPlotterCV
1
0
0
0
0
129
TR-Methylation_Clustering_CNMF
1
0
0
0
0
130
TR-Methylation_Preprocess
0
1
0
0
0
131
TR-miR_Clustering_CNMF
0
1
0
0
0
132
TR-miR_Clustering_Consensus
0
1
0
0
0
133
TR-miR_FindDirectTargets
0
1
0
0
0
134
TR-miRseq_Clustering_CNMF
1
0
0
0
0
135
TR-miRseq_Clustering_Consensus
1
0
0
0
0
136
TR-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
137
TR-miRseq_Mature_Clustering_Consensus
1
0
0
0
0
138
TR-miRseq_Mature_Preprocess
0
1
0
0
0
139
TR-miRseq_Preprocess
0
1
0
0
0
140
TR-mRNA_Clustering_CNMF
1
0
0
0
0
141
TR-mRNA_Clustering_Consensus
1
0
0
0
0
142
TR-mRNA_Preprocess_Median
0
1
0
0
0
143
TR-mRNAseq_Clustering_CNMF
1
0
0
0
0
144
TR-mRNAseq_Clustering_Consensus
1
0
0
0
0
145
TR-Mutation_Assessor
1
0
0
0
0
146
TR-Mutation_CHASM
1
0
0
0
0
147
TR-MutSigNozzleReport1.5
1
0
0
0
0
148
TR-MutSigNozzleReport2.0
1
0
0
0
0
149
TR-MutSigNozzleReport2CV
1
0
0
0
0
150
TR-MutSigNozzleReportCV
1
0
0
0
0
151
TR-MutSigPreprocess1.5
1
0
0
0
0
152
TR-MutSigPreprocess2.0
1
0
0
0
0
153
TR-MutSigRun1.5
1
0
0
0
0
154
TR-MutSigRun2.0
1
0
0
0
0
155
TR-MutSigRun2CV
1
0
0
0
0
156
TR-MutSigRunCV
1
0
0
0
0
157
TR-Paradigm_mRNA
1
0
0
0
0
158
TR-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
159
TR-Paradigm_Prepare_mRNA
1
0
0
0
0
160
TR-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
161
TR-Paradigm_Prepare_RNASeq
1
0
0
0
0
162
TR-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
163
TR-ParadigmPreprocess_mRNA
0
1
0
0
0
164
TR-Paradigm_Preprocess_mRNA
1
0
0
0
0
165
TR-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
166
TR-Paradigm_Preprocess_RNASeq
1
0
0
0
0
167
TR-ParadigmPreprocess_RNASeq
1
0
0
0
0
168
TR-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
169
TR-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
170
TR-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
171
TR-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
172
TR-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
173
TR-Paradigm_RNASeq
1
0
0
0
0
174
TR-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
175
TR-Pathway_FindEnrichedGenes
1
0
0
0
0
176
TR-Pathway_Hotnet
1
0
0
0
0
177
TR-Pathway_Paradigm_mRNA
1
0
0
0
0
178
TR-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
179
TR-Pathway_Paradigm_RNASeq
1
0
0
0
0
180
TR-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
181
TR-ProcessCoverageForMutSig1.5
1
0
0
0
0
182
TR-ProcessCoverageForMutSig2.0
1
0
0
0
0
183
TR-RPPA_Clustering_CNMF
1
0
0
0
0
184
TR-RPPA_Clustering_Consensus
1
0
0
0
0
185
TP-Aggregate_Gene_Status
1
0
0
0
0
186
TP-Aggregate_Molecular_Subtype_Clusters
0
1
0
0
0
187
TP-Append_CustomClinical
0
1
0
0
0
188
TP-CoMut1.5
1
0
0
0
0
189
TP-CoMut2.0
1
0
0
0
0
190
TP-CoMut2CV
1
0
0
0
0
191
TP-CoMutCV
1
0
0
0
0
192
TP-CopyNumber_Clustering_CNMF
1
0
0
0
0
193
TP-CopyNumber_Gistic2
0
1
0
0
0
194
TP-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
195
TP-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
196
TP-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
197
TP-Correlate_Clinical_vs_Methylation
1
0
0
0
0
198
TP-Correlate_Clinical_vs_miR
1
0
0
0
0
199
TP-Correlate_Clinical_vs_miRseq
1
0
0
0
0
200
TP-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
201
TP-Correlate_Clinical_vs_mRNA
1
0
0
0
0
202
TP-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
203
TP-Correlate_Clinical_vs_Mutation
1
0
0
0
0
204
TP-Correlate_Clinical_vs_RPPA
1
0
0
0
0
205
TP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
206
TP-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
207
TP-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
208
TP-Correlate_Methylation_vs_mRNA
1
0
0
0
0
209
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
210
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
211
TP-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
212
TP-expanded_coMutPlot
1
0
0
0
0
213
TP-GenerateStickFigures1.5
1
0
0
0
0
214
TP-GenerateStickFigures2.0
1
0
0
0
0
215
TP-GenerateStickFigures2CV
1
0
0
0
0
216
TP-GenerateStickFiguresCV
1
0
0
0
0
217
TP-LegoPlotter1.5
1
0
0
0
0
218
TP-LegoPlotter2.0
1
0
0
0
0
219
TP-LegoPlotter2CV
1
0
0
0
0
220
TP-LegoPlotterCV
1
0
0
0
0
221
TP-Methylation_Clustering_CNMF
1
0
0
0
0
222
TP-Methylation_Preprocess
0
1
0
0
0
223
TP-miR_Clustering_CNMF
0
0
0
1
0
224
TP-miR_Clustering_Consensus
0
0
0
1
0
225
TP-miR_FindDirectTargets
0
1
0
0
0
226
TP-miRseq_Clustering_CNMF
1
0
0
0
0
227
TP-miRseq_Clustering_Consensus
1
0
0
0
0
228
TP-miRseq_Mature_Clustering_CNMF
0
1
0
0
0
229
TP-miRseq_Mature_Clustering_Consensus
0
1
0
0
0
230
TP-miRseq_Mature_Preprocess
0
0
0
1
0
231
TP-miRseq_Preprocess
1
0
0
0
0
232
TP-mRNA_Clustering_CNMF
0
1
0
0
0
233
TP-mRNA_Clustering_Consensus
0
0
0
1
0
234
TP-mRNA_Preprocess_Median
0
0
0
1
0
235
TP-mRNAseq_Clustering_CNMF
1
0
0
0
0
236
TP-mRNAseq_Clustering_Consensus
1
0
0
0
0
237
TP-Mutation_Assessor
1
0
0
0
0
238
TP-Mutation_CHASM
1
0
0
0
0
239
TP-MutSigNozzleReport1.5
1
0
0
0
0
240
TP-MutSigNozzleReport2.0
1
0
0
0
0
241
TP-MutSigNozzleReport2CV
1
0
0
0
0
242
TP-MutSigNozzleReportCV
1
0
0
0
0
243
TP-MutSigPreprocess1.5
1
0
0
0
0
244
TP-MutSigPreprocess2.0
1
0
0
0
0
245
TP-MutSigRun1.5
1
0
0
0
0
246
TP-MutSigRun2.0
1
0
0
0
0
247
TP-MutSigRun2CV
1
0
0
0
0
248
TP-MutSigRunCV
1
0
0
0
0
249
TP-Paradigm_mRNA
1
0
0
0
0
250
TP-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
251
TP-Paradigm_Prepare_mRNA
1
0
0
0
0
252
TP-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
253
TP-Paradigm_Prepare_RNASeq
1
0
0
0
0
254
TP-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
255
TP-ParadigmPreprocess_mRNA
0
1
0
0
0
256
TP-Paradigm_Preprocess_mRNA
1
0
0
0
0
257
TP-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
258
TP-Paradigm_Preprocess_RNASeq
1
0
0
0
0
259
TP-ParadigmPreprocess_RNASeq
1
0
0
0
0
260
TP-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
261
TP-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
262
TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
263
TP-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
264
TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
265
TP-Paradigm_RNASeq
1
0
0
0
0
266
TP-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
267
TP-Pathway_FindEnrichedGenes
1
0
0
0
0
268
TP-Pathway_Hotnet
1
0
0
0
0
269
TP-Pathway_Paradigm_mRNA
1
0
0
0
0
270
TP-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
271
TP-Pathway_Paradigm_RNASeq
1
0
0
0
0
272
TP-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
273
TP-ProcessCoverageForMutSig1.5
1
0
0
0
0
274
TP-ProcessCoverageForMutSig2.0
1
0
0
0
0
275
TP-RPPA_Clustering_CNMF
1
0
0
0
0
276
TP-RPPA_Clustering_Consensus
1
0
0
0
0
277
TM-Aggregate_Gene_Status
1
0
0
0
0
278
TM-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
279
TM-Append_CustomClinical
0
1
0
0
0
280
TM-CoMut1.5
1
0
0
0
0
281
TM-CoMut2.0
1
0
0
0
0
282
TM-CoMut2CV
1
0
0
0
0
283
TM-CoMutCV
1
0
0
0
0
284
TM-CopyNumber_Clustering_CNMF
1
0
0
0
0
285
TM-CopyNumber_Gistic2
0
1
0
0
0
286
TM-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
287
TM-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
288
TM-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
289
TM-Correlate_Clinical_vs_Methylation
1
0
0
0
0
290
TM-Correlate_Clinical_vs_miR
1
0
0
0
0
291
TM-Correlate_Clinical_vs_miRseq
1
0
0
0
0
292
TM-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
293
TM-Correlate_Clinical_vs_mRNA
1
0
0
0
0
294
TM-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
295
TM-Correlate_Clinical_vs_Mutation
1
0
0
0
0
296
TM-Correlate_Clinical_vs_RPPA
1
0
0
0
0
297
TM-Correlate_CopyNumber_vs_miR
1
0
0
0
0
298
TM-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
299
TM-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
300
TM-Correlate_Methylation_vs_mRNA
1
0
0
0
0
301
TM-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
302
TM-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
303
TM-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
304
TM-expanded_coMutPlot
1
0
0
0
0
305
TM-GenerateStickFigures1.5
1
0
0
0
0
306
TM-GenerateStickFigures2.0
1
0
0
0
0
307
TM-GenerateStickFigures2CV
1
0
0
0
0
308
TM-GenerateStickFiguresCV
1
0
0
0
0
309
TM-LegoPlotter1.5
1
0
0
0
0
310
TM-LegoPlotter2.0
1
0
0
0
0
311
TM-LegoPlotter2CV
1
0
0
0
0
312
TM-LegoPlotterCV
1
0
0
0
0
313
TM-Methylation_Clustering_CNMF
1
0
0
0
0
314
TM-Methylation_Preprocess
0
1
0
0
0
315
TM-miR_Clustering_CNMF
1
0
0
0
0
316
TM-miR_Clustering_Consensus
1
0
0
0
0
317
TM-miR_FindDirectTargets
1
0
0
0
0
318
TM-miRseq_Clustering_CNMF
1
0
0
0
0
319
TM-miRseq_Clustering_Consensus
1
0
0
0
0
320
TM-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
321
TM-miRseq_Mature_Clustering_Consensus
1
0
0
0
0
322
TM-miRseq_Mature_Preprocess
0
1
0
0
0
323
TM-miRseq_Preprocess
0
1
0
0
0
324
TM-mRNA_Clustering_CNMF
1
0
0
0
0
325
TM-mRNA_Clustering_Consensus
1
0
0
0
0
326
TM-mRNA_Preprocess_Median
0
1
0
0
0
327
TM-mRNAseq_Clustering_CNMF
1
0
0
0
0
328
TM-mRNAseq_Clustering_Consensus
1
0
0
0
0
329
TM-Mutation_Assessor
1
0
0
0
0
330
TM-Mutation_CHASM
1
0
0
0
0
331
TM-MutSigNozzleReport1.5
1
0
0
0
0
332
TM-MutSigNozzleReport2.0
1
0
0
0
0
333
TM-MutSigNozzleReport2CV
1
0
0
0
0
334
TM-MutSigNozzleReportCV
1
0
0
0
0
335
TM-MutSigPreprocess1.5
1
0
0
0
0
336
TM-MutSigPreprocess2.0
1
0
0
0
0
337
TM-MutSigRun1.5
1
0
0
0
0
338
TM-MutSigRun2.0
1
0
0
0
0
339
TM-MutSigRun2CV
1
0
0
0
0
340
TM-MutSigRunCV
1
0
0
0
0
341
TM-Paradigm_mRNA
1
0
0
0
0
342
TM-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
343
TM-Paradigm_Prepare_mRNA
1
0
0
0
0
344
TM-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
345
TM-Paradigm_Prepare_RNASeq
1
0
0
0
0
346
TM-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
347
TM-ParadigmPreprocess_mRNA
0
1
0
0
0
348
TM-Paradigm_Preprocess_mRNA
1
0
0
0
0
349
TM-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
350
TM-Paradigm_Preprocess_RNASeq
1
0
0
0
0
351
TM-ParadigmPreprocess_RNASeq
1
0
0
0
0
352
TM-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
353
TM-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
354
TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
355
TM-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
356
TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
357
TM-Paradigm_RNASeq
1
0
0
0
0
358
TM-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
359
TM-Pathway_FindEnrichedGenes
1
0
0
0
0
360
TM-Pathway_Hotnet
1
0
0
0
0
361
TM-Pathway_Paradigm_mRNA
1
0
0
0
0
362
TM-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
363
TM-Pathway_Paradigm_RNASeq
1
0
0
0
0
364
TM-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
365
TM-ProcessCoverageForMutSig1.5
1
0
0
0
0
366
TM-ProcessCoverageForMutSig2.0
1
0
0
0
0
367
TM-RPPA_Clustering_CNMF
1
0
0
0
0
368
TM-RPPA_Clustering_Consensus
1
0
0
0
0
369
TB-Aggregate_Gene_Status
1
0
0
0
0
370
TB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
371
TB-Append_CustomClinical
0
1
0
0
0
372
TB-CoMut1.5
1
0
0
0
0
373
TB-CoMut2.0
1
0
0
0
0
374
TB-CoMut2CV
1
0
0
0
0
375
TB-CoMutCV
1
0
0
0
0
376
TB-CopyNumber_Clustering_CNMF
1
0
0
0
0
377
TB-CopyNumber_Gistic2
0
1
0
0
0
378
TB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
379
TB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
380
TB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
381
TB-Correlate_Clinical_vs_Methylation
1
0
0
0
0
382
TB-Correlate_Clinical_vs_miR
1
0
0
0
0
383
TB-Correlate_Clinical_vs_miRseq
1
0
0
0
0
384
TB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
385
TB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
386
TB-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
387
TB-Correlate_Clinical_vs_Mutation
1
0
0
0
0
388
TB-Correlate_Clinical_vs_RPPA
1
0
0
0
0
389
TB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
390
TB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
391
TB-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
392
TB-Correlate_Methylation_vs_mRNA
1
0
0
0
0
393
TB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
394
TB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
395
TB-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
396
TB-expanded_coMutPlot
1
0
0
0
0
397
TB-GenerateStickFigures1.5
1
0
0
0
0
398
TB-GenerateStickFigures2.0
1
0
0
0
0
399
TB-GenerateStickFigures2CV
1
0
0
0
0
400
TB-GenerateStickFiguresCV
1
0
0
0
0
401
TB-LegoPlotter1.5
1
0
0
0
0
402
TB-LegoPlotter2.0
1
0
0
0
0
403
TB-LegoPlotter2CV
1
0
0
0
0
404
TB-LegoPlotterCV
1
0
0
0
0
405
TB-Methylation_Clustering_CNMF
1
0
0
0
0
406
TB-Methylation_Preprocess
0
1
0
0
0
407
TB-miR_Clustering_CNMF
1
0
0
0
0
408
TB-miR_Clustering_Consensus
1
0
0
0
0
409
TB-miR_FindDirectTargets
1
0
0
0
0
410
TB-miRseq_Clustering_CNMF
1
0
0
0
0
411
TB-miRseq_Clustering_Consensus
1
0
0
0
0
412
TB-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
413
TB-miRseq_Mature_Clustering_Consensus
1
0
0
0
0
414
TB-miRseq_Mature_Preprocess
1
0
0
0
0
415
TB-miRseq_Preprocess
0
1
0
0
0
416
TB-mRNA_Clustering_CNMF
1
0
0
0
0
417
TB-mRNA_Clustering_Consensus
1
0
0
0
0
418
TB-mRNA_Preprocess_Median
1
0
0
0
0
419
TB-mRNAseq_Clustering_CNMF
0
1
0
0
0
420
TB-mRNAseq_Clustering_Consensus
0
1
0
0
0
421
TB-Mutation_Assessor
1
0
0
0
0
422
TB-Mutation_CHASM
1
0
0
0
0
423
TB-MutSigNozzleReport1.5
1
0
0
0
0
424
TB-MutSigNozzleReport2.0
1
0
0
0
0
425
TB-MutSigNozzleReport2CV
1
0
0
0
0
426
TB-MutSigNozzleReportCV
1
0
0
0
0
427
TB-MutSigPreprocess1.5
1
0
0
0
0
428
TB-MutSigPreprocess2.0
1
0
0
0
0
429
TB-MutSigRun1.5
1
0
0
0
0
430
TB-MutSigRun2.0
1
0
0
0
0
431
TB-MutSigRun2CV
1
0
0
0
0
432
TB-MutSigRunCV
1
0
0
0
0
433
TB-Paradigm_mRNA
1
0
0
0
0
434
TB-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
435
TB-Paradigm_Prepare_mRNA
1
0
0
0
0
436
TB-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
437
TB-Paradigm_Prepare_RNASeq
1
0
0
0
0
438
TB-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
439
TB-Paradigm_Preprocess_mRNA
1
0
0
0
0
440
TB-ParadigmPreprocess_mRNA
1
0
0
0
0
441
TB-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
442
TB-ParadigmPreprocess_RNASeq
0
1
0
0
0
443
TB-Paradigm_Preprocess_RNASeq
1
0
0
0
0
444
TB-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
445
TB-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
446
TB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
447
TB-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
448
TB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
449
TB-Paradigm_RNASeq
1
0
0
0
0
450
TB-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
451
TB-Pathway_FindEnrichedGenes
1
0
0
0
0
452
TB-Pathway_Hotnet
1
0
0
0
0
453
TB-Pathway_Paradigm_mRNA
1
0
0
0
0
454
TB-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
455
TB-Pathway_Paradigm_RNASeq
1
0
0
0
0
456
TB-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
457
TB-ProcessCoverageForMutSig1.5
1
0
0
0
0
458
TB-ProcessCoverageForMutSig2.0
1
0
0
0
0
459
TB-RPPA_Clustering_CNMF
1
0
0
0
0
460
TB-RPPA_Clustering_Consensus
1
0
0
0
0
461
TAP-Aggregate_Gene_Status
1
0
0
0
0
462
TAP-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
463
TAP-Append_CustomClinical
1
0
0
0
0
464
TAP-CoMut1.5
1
0
0
0
0
465
TAP-CoMut2.0
1
0
0
0
0
466
TAP-CoMut2CV
1
0
0
0
0
467
TAP-CoMutCV
1
0
0
0
0
468
TAP-CopyNumber_Clustering_CNMF
1
0
0
0
0
469
TAP-CopyNumber_Gistic2
0
1
0
0
0
470
TAP-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
471
TAP-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
472
TAP-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
473
TAP-Correlate_Clinical_vs_Methylation
1
0
0
0
0
474
TAP-Correlate_Clinical_vs_miR
1
0
0
0
0
475
TAP-Correlate_Clinical_vs_miRseq
1
0
0
0
0
476
TAP-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
477
TAP-Correlate_Clinical_vs_mRNA
1
0
0
0
0
478
TAP-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
479
TAP-Correlate_Clinical_vs_Mutation
1
0
0
0
0
480
TAP-Correlate_Clinical_vs_RPPA
1
0
0
0
0
481
TAP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
482
TAP-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
483
TAP-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
484
TAP-Correlate_Methylation_vs_mRNA
1
0
0
0
0
485
TAP-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
486
TAP-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
487
TAP-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
488
TAP-expanded_coMutPlot
1
0
0
0
0
489
TAP-GenerateStickFigures1.5
1
0
0
0
0
490
TAP-GenerateStickFigures2.0
1
0
0
0
0
491
TAP-GenerateStickFigures2CV
1
0
0
0
0
492
TAP-GenerateStickFiguresCV
1
0
0
0
0
493
TAP-LegoPlotter1.5
1
0
0
0
0
494
TAP-LegoPlotter2.0
1
0
0
0
0
495
TAP-LegoPlotter2CV
1
0
0
0
0
496
TAP-LegoPlotterCV
1
0
0
0
0
497
TAP-Methylation_Clustering_CNMF
1
0
0
0
0
498
TAP-Methylation_Preprocess
0
1
0
0
0
499
TAP-miR_Clustering_CNMF
1
0
0
0
0
500
TAP-miR_Clustering_Consensus
1
0
0
0
0
501
TAP-miR_FindDirectTargets
1
0
0
0
0
502
TAP-miRseq_Clustering_CNMF
1
0
0
0
0
503
TAP-miRseq_Clustering_Consensus
1
0
0
0
0
504
TAP-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
505
TAP-miRseq_Mature_Clustering_Consensus
1
0
0
0
0
506
TAP-miRseq_Mature_Preprocess
0
1
0
0
0
507
TAP-miRseq_Preprocess
0
1
0
0
0
508
TAP-mRNA_Clustering_CNMF
1
0
0
0
0
509
TAP-mRNA_Clustering_Consensus
1
0
0
0
0
510
TAP-mRNA_Preprocess_Median
1
0
0
0
0
511
TAP-mRNAseq_Clustering_CNMF
1
0
0
0
0
512
TAP-mRNAseq_Clustering_Consensus
1
0
0
0
0
513
TAP-Mutation_Assessor
1
0
0
0
0
514
TAP-Mutation_CHASM
1
0
0
0
0
515
TAP-MutSigNozzleReport1.5
1
0
0
0
0
516
TAP-MutSigNozzleReport2.0
1
0
0
0
0
517
TAP-MutSigNozzleReport2CV
1
0
0
0
0
518
TAP-MutSigNozzleReportCV
1
0
0
0
0
519
TAP-MutSigPreprocess1.5
1
0
0
0
0
520
TAP-MutSigPreprocess2.0
1
0
0
0
0
521
TAP-MutSigRun1.5
1
0
0
0
0
522
TAP-MutSigRun2.0
1
0
0
0
0
523
TAP-MutSigRun2CV
1
0
0
0
0
524
TAP-MutSigRunCV
1
0
0
0
0
525
TAP-Paradigm_mRNA
1
0
0
0
0
526
TAP-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
527
TAP-Paradigm_Prepare_mRNA
1
0
0
0
0
528
TAP-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
529
TAP-Paradigm_Prepare_RNASeq
1
0
0
0
0
530
TAP-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
531
TAP-Paradigm_Preprocess_mRNA
1
0
0
0
0
532
TAP-ParadigmPreprocess_mRNA
1
0
0
0
0
533
TAP-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
534
TAP-Paradigm_Preprocess_RNASeq
1
0
0
0
0
535
TAP-ParadigmPreprocess_RNASeq
1
0
0
0
0
536
TAP-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
537
TAP-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
538
TAP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
539
TAP-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
540
TAP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
541
TAP-Paradigm_RNASeq
1
0
0
0
0
542
TAP-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
543
TAP-Pathway_FindEnrichedGenes
1
0
0
0
0
544
TAP-Pathway_Hotnet
1
0
0
0
0
545
TAP-Pathway_Paradigm_mRNA
1
0
0
0
0
546
TAP-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
547
TAP-Pathway_Paradigm_RNASeq
1
0
0
0
0
548
TAP-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
549
TAP-ProcessCoverageForMutSig1.5
1
0
0
0
0
550
TAP-ProcessCoverageForMutSig2.0
1
0
0
0
0
551
TAP-RPPA_Clustering_CNMF
1
0
0
0
0
552
TAP-RPPA_Clustering_Consensus
1
0
0
0
0
553
NT-Aggregate_Gene_Status
1
0
0
0
0
554
NT-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
555
NT-Append_CustomClinical
0
1
0
0
0
556
NT-CoMut1.5
1
0
0
0
0
557
NT-CoMut2.0
1
0
0
0
0
558
NT-CoMut2CV
1
0
0
0
0
559
NT-CoMutCV
1
0
0
0
0
560
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
561
NT-CopyNumber_Gistic2
0
1
0
0
0
562
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
563
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
564
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
565
NT-Correlate_Clinical_vs_Methylation
1
0
0
0
0
566
NT-Correlate_Clinical_vs_miR
1
0
0
0
0
567
NT-Correlate_Clinical_vs_miRseq
1
0
0
0
0
568
NT-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
569
NT-Correlate_Clinical_vs_mRNA
1
0
0
0
0
570
NT-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
571
NT-Correlate_Clinical_vs_Mutation
1
0
0
0
0
572
NT-Correlate_Clinical_vs_RPPA
1
0
0
0
0
573
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
574
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
575
NT-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
576
NT-Correlate_Methylation_vs_mRNA
1
0
0
0
0
577
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
578
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
579
NT-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
580
NT-expanded_coMutPlot
1
0
0
0
0
581
NT-GenerateStickFigures1.5
1
0
0
0
0
582
NT-GenerateStickFigures2.0
1
0
0
0
0
583
NT-GenerateStickFigures2CV
1
0
0
0
0
584
NT-GenerateStickFiguresCV
1
0
0
0
0
585
NT-LegoPlotter1.5
1
0
0
0
0
586
NT-LegoPlotter2.0
1
0
0
0
0
587
NT-LegoPlotter2CV
1
0
0
0
0
588
NT-LegoPlotterCV
1
0
0
0
0
589
NT-Methylation_Clustering_CNMF
1
0
0
0
0
590
NT-Methylation_Preprocess
0
1
0
0
0
591
NT-miR_Clustering_CNMF
0
1
0
0
0
592
NT-miR_Clustering_Consensus
0
1
0
0
0
593
NT-miR_FindDirectTargets
0
1
0
0
0
594
NT-miRseq_Clustering_CNMF
1
0
0
0
0
595
NT-miRseq_Clustering_Consensus
1
0
0
0
0
596
NT-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
597
NT-miRseq_Mature_Clustering_Consensus
1
0
0
0
0
598
NT-miRseq_Mature_Preprocess
0
1
0
0
0
599
NT-miRseq_Preprocess
0
1
0
0
0
600
NT-mRNA_Clustering_CNMF
1
0
0
0
0
601
NT-mRNA_Clustering_Consensus
1
0
0
0
0
602
NT-mRNA_Preprocess_Median
0
1
0
0
0
603
NT-mRNAseq_Clustering_CNMF
0
1
0
0
0
604
NT-mRNAseq_Clustering_Consensus
0
1
0
0
0
605
NT-Mutation_Assessor
1
0
0
0
0
606
NT-Mutation_CHASM
1
0
0
0
0
607
NT-MutSigNozzleReport1.5
1
0
0
0
0
608
NT-MutSigNozzleReport2.0
1
0
0
0
0
609
NT-MutSigNozzleReport2CV
1
0
0
0
0
610
NT-MutSigNozzleReportCV
1
0
0
0
0
611
NT-MutSigPreprocess1.5
1
0
0
0
0
612
NT-MutSigPreprocess2.0
1
0
0
0
0
613
NT-MutSigRun1.5
1
0
0
0
0
614
NT-MutSigRun2.0
1
0
0
0
0
615
NT-MutSigRun2CV
1
0
0
0
0
616
NT-MutSigRunCV
1
0
0
0
0
617
NT-Paradigm_mRNA
1
0
0
0
0
618
NT-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
619
NT-Paradigm_Prepare_mRNA
1
0
0
0
0
620
NT-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
621
NT-Paradigm_Prepare_RNASeq
1
0
0
0
0
622
NT-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
623
NT-ParadigmPreprocess_mRNA
0
1
0
0
0
624
NT-Paradigm_Preprocess_mRNA
1
0
0
0
0
625
NT-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
626
NT-ParadigmPreprocess_RNASeq
0
1
0
0
0
627
NT-Paradigm_Preprocess_RNASeq
1
0
0
0
0
628
NT-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
629
NT-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
630
NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
631
NT-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
632
NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
633
NT-Paradigm_RNASeq
1
0
0
0
0
634
NT-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
635
NT-Pathway_FindEnrichedGenes
1
0
0
0
0
636
NT-Pathway_Hotnet
1
0
0
0
0
637
NT-Pathway_Paradigm_mRNA
1
0
0
0
0
638
NT-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
639
NT-Pathway_Paradigm_RNASeq
1
0
0
0
0
640
NT-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
641
NT-ProcessCoverageForMutSig1.5
1
0
0
0
0
642
NT-ProcessCoverageForMutSig2.0
1
0
0
0
0
643
NT-RPPA_Clustering_CNMF
1
0
0
0
0
644
NT-RPPA_Clustering_Consensus
1
0
0
0
0
645
NB-Aggregate_Gene_Status
1
0
0
0
0
646
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
647
NB-Append_CustomClinical
0
1
0
0
0
648
NB-CoMut1.5
1
0
0
0
0
649
NB-CoMut2.0
1
0
0
0
0
650
NB-CoMut2CV
1
0
0
0
0
651
NB-CoMutCV
1
0
0
0
0
652
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
653
NB-CopyNumber_Gistic2
0
1
0
0
0
654
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
655
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
656
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
657
NB-Correlate_Clinical_vs_Methylation
1
0
0
0
0
658
NB-Correlate_Clinical_vs_miR
1
0
0
0
0
659
NB-Correlate_Clinical_vs_miRseq
1
0
0
0
0
660
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
661
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
662
NB-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
663
NB-Correlate_Clinical_vs_Mutation
1
0
0
0
0
664
NB-Correlate_Clinical_vs_RPPA
1
0
0
0
0
665
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
666
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
667
NB-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
668
NB-Correlate_Methylation_vs_mRNA
1
0
0
0
0
669
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
670
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
671
NB-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
672
NB-expanded_coMutPlot
1
0
0
0
0
673
NB-GenerateStickFigures1.5
1
0
0
0
0
674
NB-GenerateStickFigures2.0
1
0
0
0
0
675
NB-GenerateStickFigures2CV
1
0
0
0
0
676
NB-GenerateStickFiguresCV
1
0
0
0
0
677
NB-LegoPlotter1.5
1
0
0
0
0
678
NB-LegoPlotter2.0
1
0
0
0
0
679
NB-LegoPlotter2CV
1
0
0
0
0
680
NB-LegoPlotterCV
1
0
0
0
0
681
NB-Methylation_Clustering_CNMF
1
0
0
0
0
682
NB-Methylation_Preprocess
1
0
0
0
0
683
NB-miR_Clustering_CNMF
1
0
0
0
0
684
NB-miR_Clustering_Consensus
1
0
0
0
0
685
NB-miR_FindDirectTargets
1
0
0
0
0
686
NB-miRseq_Clustering_CNMF
1
0
0
0
0
687
NB-miRseq_Clustering_Consensus
1
0
0
0
0
688
NB-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
689
NB-miRseq_Mature_Clustering_Consensus
1
0
0
0
0
690
NB-miRseq_Mature_Preprocess
1
0
0
0
0
691
NB-miRseq_Preprocess
1
0
0
0
0
692
NB-mRNA_Clustering_CNMF
1
0
0
0
0
693
NB-mRNA_Clustering_Consensus
1
0
0
0
0
694
NB-mRNA_Preprocess_Median
1
0
0
0
0
695
NB-mRNAseq_Clustering_CNMF
1
0
0
0
0
696
NB-mRNAseq_Clustering_Consensus
1
0
0
0
0
697
NB-Mutation_Assessor
1
0
0
0
0
698
NB-Mutation_CHASM
1
0
0
0
0
699
NB-MutSigNozzleReport1.5
1
0
0
0
0
700
NB-MutSigNozzleReport2.0
1
0
0
0
0
701
NB-MutSigNozzleReport2CV
1
0
0
0
0
702
NB-MutSigNozzleReportCV
1
0
0
0
0
703
NB-MutSigPreprocess1.5
1
0
0
0
0
704
NB-MutSigPreprocess2.0
1
0
0
0
0
705
NB-MutSigRun1.5
1
0
0
0
0
706
NB-MutSigRun2.0
1
0
0
0
0
707
NB-MutSigRun2CV
1
0
0
0
0
708
NB-MutSigRunCV
1
0
0
0
0
709
NB-Paradigm_mRNA
1
0
0
0
0
710
NB-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
711
NB-Paradigm_Prepare_mRNA
1
0
0
0
0
712
NB-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
713
NB-Paradigm_Prepare_RNASeq
1
0
0
0
0
714
NB-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
715
NB-Paradigm_Preprocess_mRNA
1
0
0
0
0
716
NB-ParadigmPreprocess_mRNA
1
0
0
0
0
717
NB-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
718
NB-Paradigm_Preprocess_RNASeq
1
0
0
0
0
719
NB-ParadigmPreprocess_RNASeq
1
0
0
0
0
720
NB-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
721
NB-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
722
NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
723
NB-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
724
NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
725
NB-Paradigm_RNASeq
1
0
0
0
0
726
NB-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
727
NB-Pathway_FindEnrichedGenes
1
0
0
0
0
728
NB-Pathway_Hotnet
1
0
0
0
0
729
NB-Pathway_Paradigm_mRNA
1
0
0
0
0
730
NB-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
731
NB-Pathway_Paradigm_RNASeq
1
0
0
0
0
732
NB-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
733
NB-ProcessCoverageForMutSig1.5
1
0
0
0
0
734
NB-ProcessCoverageForMutSig2.0
1
0
0
0
0
735
NB-RPPA_Clustering_CNMF
1
0
0
0
0
736
NB-RPPA_Clustering_Consensus
1
0
0
0
0
737
FFPE-Aggregate_Gene_Status
1
0
0
0
0
738
FFPE-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
739
FFPE-Append_CustomClinical
0
1
0
0
0
740
FFPE-CoMut1.5
1
0
0
0
0
741
FFPE-CoMut2.0
1
0
0
0
0
742
FFPE-CoMut2CV
1
0
0
0
0
743
FFPE-CoMutCV
1
0
0
0
0
744
FFPE-CopyNumber_Clustering_CNMF
1
0
0
0
0
745
FFPE-CopyNumber_Gistic2
0
1
0
0
0
746
FFPE-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
747
FFPE-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
748
FFPE-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
749
FFPE-Correlate_Clinical_vs_Methylation
1
0
0
0
0
750
FFPE-Correlate_Clinical_vs_miR
1
0
0
0
0
751
FFPE-Correlate_Clinical_vs_miRseq
1
0
0
0
0
752
FFPE-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
753
FFPE-Correlate_Clinical_vs_mRNA
1
0
0
0
0
754
FFPE-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
755
FFPE-Correlate_Clinical_vs_Mutation
1
0
0
0
0
756
FFPE-Correlate_Clinical_vs_RPPA
1
0
0
0
0
757
FFPE-Correlate_CopyNumber_vs_miR
1
0
0
0
0
758
FFPE-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
759
FFPE-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
760
FFPE-Correlate_Methylation_vs_mRNA
1
0
0
0
0
761
FFPE-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
762
FFPE-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
763
FFPE-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
764
FFPE-expanded_coMutPlot
1
0
0
0
0
765
FFPE-GenerateStickFigures1.5
1
0
0
0
0
766
FFPE-GenerateStickFigures2.0
1
0
0
0
0
767
FFPE-GenerateStickFigures2CV
1
0
0
0
0
768
FFPE-GenerateStickFiguresCV
1
0
0
0
0
769
FFPE-LegoPlotter1.5
1
0
0
0
0
770
FFPE-LegoPlotter2.0
1
0
0
0
0
771
FFPE-LegoPlotter2CV
1
0
0
0
0
772
FFPE-LegoPlotterCV
1
0
0
0
0
773
FFPE-Methylation_Clustering_CNMF
1
0
0
0
0
774
FFPE-Methylation_Preprocess
0
1
0
0
0
775
FFPE-miR_Clustering_CNMF
1
0
0
0
0
776
FFPE-miR_Clustering_Consensus
1
0
0
0
0
777
FFPE-miR_FindDirectTargets
1
0
0
0
0
778
FFPE-miRseq_Clustering_CNMF
1
0
0
0
0
779
FFPE-miRseq_Clustering_Consensus
1
0
0
0
0
780
FFPE-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
781
FFPE-miRseq_Mature_Clustering_Consensus
1
0
0
0
0
782
FFPE-miRseq_Mature_Preprocess
0
1
0
0
0
783
FFPE-miRseq_Preprocess
0
1
0
0
0
784
FFPE-mRNA_Clustering_CNMF
1
0
0
0
0
785
FFPE-mRNA_Clustering_Consensus
1
0
0
0
0
786
FFPE-mRNA_Preprocess_Median
1
0
0
0
0
787
FFPE-mRNAseq_Clustering_CNMF
1
0
0
0
0
788
FFPE-mRNAseq_Clustering_Consensus
1
0
0
0
0
789
FFPE-Mutation_Assessor
1
0
0
0
0
790
FFPE-Mutation_CHASM
1
0
0
0
0
791
FFPE-MutSigNozzleReport1.5
1
0
0
0
0
792
FFPE-MutSigNozzleReport2.0
1
0
0
0
0
793
FFPE-MutSigNozzleReport2CV
1
0
0
0
0
794
FFPE-MutSigNozzleReportCV
1
0
0
0
0
795
FFPE-MutSigPreprocess1.5
1
0
0
0
0
796
FFPE-MutSigPreprocess2.0
1
0
0
0
0
797
FFPE-MutSigRun1.5
1
0
0
0
0
798
FFPE-MutSigRun2.0
1
0
0
0
0
799
FFPE-MutSigRun2CV
1
0
0
0
0
800
FFPE-MutSigRunCV
1
0
0
0
0
801
FFPE-Paradigm_mRNA
1
0
0
0
0
802
FFPE-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
803
FFPE-Paradigm_Prepare_mRNA
1
0
0
0
0
804
FFPE-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
805
FFPE-Paradigm_Prepare_RNASeq
1
0
0
0
0
806
FFPE-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
807
FFPE-Paradigm_Preprocess_mRNA
1
0
0
0
0
808
FFPE-ParadigmPreprocess_mRNA
1
0
0
0
0
809
FFPE-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
810
FFPE-Paradigm_Preprocess_RNASeq
1
0
0
0
0
811
FFPE-ParadigmPreprocess_RNASeq
1
0
0
0
0
812
FFPE-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
813
FFPE-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
814
FFPE-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
815
FFPE-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
816
FFPE-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
817
FFPE-Paradigm_RNASeq
1
0
0
0
0
818
FFPE-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
819
FFPE-Pathway_FindEnrichedGenes
1
0
0
0
0
820
FFPE-Pathway_Hotnet
1
0
0
0
0
821
FFPE-Pathway_Paradigm_mRNA
1
0
0
0
0
822
FFPE-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
823
FFPE-Pathway_Paradigm_RNASeq
1
0
0
0
0
824
FFPE-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
825
FFPE-ProcessCoverageForMutSig1.5
1
0
0
0
0
826
FFPE-ProcessCoverageForMutSig2.0
1
0
0
0
0
827
FFPE-RPPA_Clustering_CNMF
1
0
0
0
0
828
FFPE-RPPA_Clustering_Consensus
1
0
0
0
0
Total
757
66
0
5
0
This table generated on Thu Jan 26 11:04:07 2017