Broad GDAC Analyses Status
dev Run for Tumor Type: PCPG

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAFrawMAF
PCPG179179175017901790179801790

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures00001
2Aggregate_Molecular_Subtype_Clusters00010
3CopyNumber_Clustering_CNMF00010
4CopyNumber_Clustering_CNMF_thresholded00010
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Methylation10000
10Correlate_Clinical_vs_miR01000
11Correlate_Clinical_vs_Molecular_Subtypes00010
12Correlate_Clinical_vs_mRNA00010
13Correlate_Clinical_vs_Mutation10000
14Correlate_CopyNumber_vs_miR00010
15Correlate_CopyNumber_vs_mRNA00010
16Correlate_Methylation_vs_mRNA10000
17Correlate_molecularSubtype_vs_CopyNumber_Arm00010
18Correlate_molecularSubtype_vs_CopyNumber_Focal00010
19Methylation_Clustering_CNMF10000
20Methylation_Preprocess10000
21miR_FindDirectTargets00010
22miR_Mature_Clustering_CNMF00010
23miR_Mature_Clustering_Consensus_Plus00010
24miR_Mature_Preprocess00010
25mRNA_lincRNA_Clustering_Consensus_Plus00010
26mRNA_lincRNA_CNMF00010
27mRNA_Preprocess00010
28mRNA_protein_coding_Clustering_CNMF00010
29mRNA_protein_coding_Clustering_Consensus_Plus00010
30Mutation_APOBEC01000
31Mutation_CoOccurrence10000
32Mutation_Signature01000
33Pathway_GSEA_mRNA00001
34Aggregate_AnalysisFeatures00010
35Aggregate_Molecular_Subtype_Clusters00010
36CopyNumber_Clustering_CNMF00010
37CopyNumber_Clustering_CNMF_thresholded00010
38CopyNumber_Gistic200010
39CopyNumber_Gistic2_Postprocess_Focal00010
40Correlate_Clinical_vs_CopyNumber_Arm00010
41Correlate_Clinical_vs_CopyNumber_Focal00010
42Correlate_Clinical_vs_Methylation10000
43Correlate_Clinical_vs_miR01000
44Correlate_Clinical_vs_Molecular_Subtypes00010
45Correlate_Clinical_vs_mRNA00010
46Correlate_Clinical_vs_Mutation10000
47Correlate_CopyNumber_vs_miR00010
48Correlate_CopyNumber_vs_mRNA00010
49Correlate_Methylation_vs_mRNA10000
50Correlate_molecularSubtype_vs_CopyNumber_Arm00010
51Correlate_molecularSubtype_vs_CopyNumber_Focal00010
52Methylation_Clustering_CNMF10000
53Methylation_Preprocess10000
54miR_FindDirectTargets00010
55miR_Mature_Clustering_CNMF00010
56miR_Mature_Clustering_Consensus_Plus00010
57miR_Mature_Preprocess00010
58mRNA_lincRNA_Clustering_Consensus_Plus00010
59mRNA_lincRNA_CNMF00010
60mRNA_Preprocess00010
61mRNA_protein_coding_Clustering_CNMF00010
62mRNA_protein_coding_Clustering_Consensus_Plus00010
63Mutation_APOBEC01000
64Mutation_CoOccurrence00010
65Mutation_Signature01000
66Pathway_GSEA_mRNA00010
67Aggregate_AnalysisFeatures00001
68Aggregate_Molecular_Subtype_Clusters10000
69CopyNumber_Clustering_CNMF10000
70CopyNumber_Clustering_CNMF_thresholded10000
71CopyNumber_Gistic200010
72CopyNumber_Gistic2_Postprocess_Focal00010
73Correlate_Clinical_vs_CopyNumber_Arm00001
74Correlate_Clinical_vs_CopyNumber_Focal00001
75Correlate_Clinical_vs_Methylation10000
76Correlate_Clinical_vs_miR10000
77Correlate_Clinical_vs_Molecular_Subtypes10000
78Correlate_Clinical_vs_mRNA00001
79Correlate_Clinical_vs_Mutation10000
80Correlate_CopyNumber_vs_miR10000
81Correlate_CopyNumber_vs_mRNA00010
82Correlate_Methylation_vs_mRNA10000
83Correlate_molecularSubtype_vs_CopyNumber_Arm10000
84Correlate_molecularSubtype_vs_CopyNumber_Focal10000
85Methylation_Clustering_CNMF10000
86Methylation_Preprocess10000
87miR_FindDirectTargets10000
88miR_Mature_Clustering_CNMF10000
89miR_Mature_Clustering_Consensus_Plus10000
90miR_Mature_Preprocess00010
91mRNA_lincRNA_Clustering_Consensus_Plus00001
92mRNA_lincRNA_CNMF00001
93mRNA_Preprocess00010
94mRNA_protein_coding_Clustering_CNMF00001
95mRNA_protein_coding_Clustering_Consensus_Plus00001
96Mutation_APOBEC01000
97Mutation_CoOccurrence10000
98Mutation_Signature01000
99Pathway_GSEA_mRNA10000
100Aggregate_AnalysisFeatures00010
101Aggregate_Molecular_Subtype_Clusters10000
102CopyNumber_Clustering_CNMF10000
103CopyNumber_Clustering_CNMF_thresholded10000
104CopyNumber_Gistic200010
105CopyNumber_Gistic2_Postprocess_Focal00010
106Correlate_Clinical_vs_CopyNumber_Arm00001
107Correlate_Clinical_vs_CopyNumber_Focal00001
108Correlate_Clinical_vs_Methylation10000
109Correlate_Clinical_vs_miR10000
110Correlate_Clinical_vs_Molecular_Subtypes10000
111Correlate_Clinical_vs_mRNA00001
112Correlate_Clinical_vs_Mutation10000
113Correlate_CopyNumber_vs_miR10000
114Correlate_CopyNumber_vs_mRNA00010
115Correlate_Methylation_vs_mRNA10000
116Correlate_molecularSubtype_vs_CopyNumber_Arm10000
117Correlate_molecularSubtype_vs_CopyNumber_Focal10000
118Methylation_Clustering_CNMF10000
119Methylation_Preprocess10000
120miR_FindDirectTargets10000
121miR_Mature_Clustering_CNMF10000
122miR_Mature_Clustering_Consensus_Plus10000
123miR_Mature_Preprocess00010
124mRNA_lincRNA_Clustering_Consensus_Plus00001
125mRNA_lincRNA_CNMF00001
126mRNA_Preprocess00010
127mRNA_protein_coding_Clustering_CNMF00001
128mRNA_protein_coding_Clustering_Consensus_Plus00001
129Mutation_APOBEC01000
130Mutation_CoOccurrence00001
131Mutation_Signature01000
132Pathway_GSEA_mRNA10000
133Aggregate_AnalysisFeatures01000
134Aggregate_Molecular_Subtype_Clusters10000
135CopyNumber_Clustering_CNMF10000
136CopyNumber_Clustering_CNMF_thresholded10000
137CopyNumber_Gistic200001
138CopyNumber_Gistic2_Postprocess_Focal10000
139Correlate_Clinical_vs_CopyNumber_Arm10000
140Correlate_Clinical_vs_CopyNumber_Focal10000
141Correlate_Clinical_vs_Methylation10000
142Correlate_Clinical_vs_miR10000
143Correlate_Clinical_vs_Molecular_Subtypes10000
144Correlate_Clinical_vs_mRNA00001
145Correlate_Clinical_vs_Mutation10000
146Correlate_CopyNumber_vs_miR10000
147Correlate_CopyNumber_vs_mRNA10000
148Correlate_Methylation_vs_mRNA10000
149Correlate_molecularSubtype_vs_CopyNumber_Arm10000
150Correlate_molecularSubtype_vs_CopyNumber_Focal10000
151Methylation_Clustering_CNMF10000
152Methylation_Preprocess10000
153miR_FindDirectTargets10000
154miR_Mature_Clustering_CNMF10000
155miR_Mature_Clustering_Consensus_Plus10000
156miR_Mature_Preprocess00010
157mRNA_lincRNA_Clustering_Consensus_Plus00001
158mRNA_lincRNA_CNMF00001
159mRNA_Preprocess00010
160mRNA_protein_coding_Clustering_CNMF00001
161mRNA_protein_coding_Clustering_Consensus_Plus00001
162Mutation_APOBEC10000
163Mutation_CoOccurrence10000
164Mutation_Signature10000
165Pathway_GSEA_mRNA10000
166Aggregate_AnalysisFeatures01000
167Aggregate_Molecular_Subtype_Clusters10000
168CopyNumber_Clustering_CNMF10000
169CopyNumber_Clustering_CNMF_thresholded10000
170CopyNumber_Gistic200001
171CopyNumber_Gistic2_Postprocess_Focal10000
172Correlate_Clinical_vs_CopyNumber_Arm10000
173Correlate_Clinical_vs_CopyNumber_Focal10000
174Correlate_Clinical_vs_Methylation10000
175Correlate_Clinical_vs_miR10000
176Correlate_Clinical_vs_Molecular_Subtypes10000
177Correlate_Clinical_vs_mRNA10000
178Correlate_Clinical_vs_Mutation10000
179Correlate_CopyNumber_vs_miR10000
180Correlate_CopyNumber_vs_mRNA10000
181Correlate_Methylation_vs_mRNA10000
182Correlate_molecularSubtype_vs_CopyNumber_Arm10000
183Correlate_molecularSubtype_vs_CopyNumber_Focal10000
184Methylation_Clustering_CNMF10000
185Methylation_Preprocess10000
186miR_FindDirectTargets10000
187miR_Mature_Clustering_CNMF10000
188miR_Mature_Clustering_Consensus_Plus10000
189miR_Mature_Preprocess10000
190mRNA_lincRNA_Clustering_Consensus_Plus10000
191mRNA_lincRNA_CNMF10000
192mRNA_Preprocess10000
193mRNA_protein_coding_Clustering_CNMF10000
194mRNA_protein_coding_Clustering_Consensus_Plus10000
195Mutation_APOBEC10000
196Mutation_CoOccurrence10000
197Mutation_Signature10000
198Pathway_GSEA_mRNA10000
199Aggregate_AnalysisFeatures01000
200Aggregate_Gene_Status10000
201Aggregate_Molecular_Subtype_Clusters01000
202Append_CustomClinical01000
203CoMut2.010000
204CoMut2CV10000
205CoMutCV10000
206CopyNumber_Clustering_CNMF10000
207CopyNumber_Clustering_CNMF_thresholded10000
208CopyNumber_Gistic201000
209CopyNumber_Gistic2_Postprocess_Focal10000
210CopyNumberLowPass_Gistic210000
211Correlate_Clinical_vs_CopyNumber_Arm10000
212Correlate_Clinical_vs_CopyNumber_Focal10000
213Correlate_Clinical_vs_Methylation10000
214Correlate_Clinical_vs_miR10000
215Correlate_Clinical_vs_miRseq10000
216Correlate_Clinical_vs_Molecular_Subtypes10000
217Correlate_Clinical_vs_mRNA10000
218Correlate_Clinical_vs_mRNAseq10000
219Correlate_Clinical_vs_Mutation10000
220Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
221Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
222Correlate_Clinical_vs_MutationRate10000
223Correlate_Clinical_vs_RPPA10000
224Correlate_CopyNumber_vs_miR10000
225Correlate_CopyNumber_vs_mRNA10000
226Correlate_CopyNumber_vs_mRNAseq10000
227Correlate_Methylation_vs_mRNA01000
228Correlate_molecularSubtype_vs_CopyNumber_Arm10000
229Correlate_molecularSubtype_vs_CopyNumber_Focal10000
230Correlate_molecularSubtype_vs_Mutation10000
231Correlate_mRNAseq_vs_Mutation_APOBEC10000
232GenerateStickFigures2.010000
233GenerateStickFigures2CV10000
234GenerateStickFiguresCV10000
235iClusterPlus10000
236LegoPlotter2.010000
237LegoPlotter2CV10000
238LegoPlotterCV10000
239Methylation_Clustering_CNMF01000
240miR_Clustering_CNMF10000
241miR_Clustering_Consensus_Plus10000
242miR_FindDirectTargets10000
243miRseq_Clustering_CNMF01000
244miRseq_Clustering_Consensus_Plus01000
245miRseq_FindDirectTargets01000
246miRseq_Mature_Clustering_CNMF01000
247miRseq_Mature_Clustering_Consensus_Plus01000
248mRNA_Clustering_CNMF10000
249mRNA_Clustering_Consensus_Plus10000
250mRNAseq_Clustering_CNMF01000
251mRNAseq_Clustering_Consensus_Plus00010
252Mutation_APOBEC10000
253Mutation_Assessor10000
254Mutation_CHASM10000
255Mutation_CoOccurrence10000
256Mutation_CoOccurrence_Custom10000
257MutSigNozzleReport2.010000
258MutSigNozzleReport2CV10000
259MutSigNozzleReportCV10000
260MutSigPreprocess2.010000
261MutSigRun2.010000
262MutSigRun2CV10000
263MutSigRunCV10000
264Paradigm_mRNA10000
265Paradigm_mRNA_And_CopyNumber10000
266Paradigm_Prepare_mRNA10000
267Paradigm_Prepare_mRNA_And_Copy_Number10000
268Paradigm_Prepare_RNASeq10000
269Paradigm_Prepare_RNASeq_And_Copy_Number10000
270Paradigm_Preprocess_mRNA10000
271ParadigmPreprocess_mRNA10000
272Paradigm_Preprocess_mRNA_And_Copy_Number10000
273ParadigmPreprocess_RNASeq01000
274Paradigm_Preprocess_RNASeq10000
275Paradigm_Preprocess_RNASeq_And_Copy_Number10000
276Paradigm_Report_Preprocess_mRNA10000
277Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
278Paradigm_Report_Preprocess_RNASeq10000
279Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
280Paradigm_RNASeq10000
281Paradigm_RNASeq_And_Copy_Number10000
282Pathway_FindEnrichedGenes10000
283Pathway_GSEA_mRNAseq10000
284Pathway_Hotnet10000
285Pathway_Overlaps_MSigDB_MutSig2CV10000
286Pathway_Paradigm_mRNA10000
287Pathway_Paradigm_mRNA_And_Copy_Number10000
288Pathway_Paradigm_RNASeq10000
289Pathway_Paradigm_RNASeq_And_Copy_Number10000
290ProcessCoverageForMutSig2.010000
291RPPA_Clustering_CNMF01000
292RPPA_Clustering_Consensus_Plus01000
293TP-Aggregate_AnalysisFeatures01000
294TP-Aggregate_Gene_Status10000
295TP-Aggregate_Molecular_Subtype_Clusters01000
296TP-Append_CustomClinical01000
297TP-CoMut2.010000
298TP-CoMut2CV10000
299TP-CoMutCV10000
300TP-CopyNumber_Clustering_CNMF10000
301TP-CopyNumber_Clustering_CNMF_thresholded10000
302TP-CopyNumber_Gistic201000
303TP-CopyNumber_Gistic2_Postprocess_Focal10000
304TP-CopyNumberLowPass_Gistic210000
305TP-Correlate_Clinical_vs_CopyNumber_Arm10000
306TP-Correlate_Clinical_vs_CopyNumber_Focal10000
307TP-Correlate_Clinical_vs_Methylation10000
308TP-Correlate_Clinical_vs_miR10000
309TP-Correlate_Clinical_vs_miRseq10000
310TP-Correlate_Clinical_vs_Molecular_Subtypes10000
311TP-Correlate_Clinical_vs_mRNA10000
312TP-Correlate_Clinical_vs_mRNAseq10000
313TP-Correlate_Clinical_vs_Mutation10000
314TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
315TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
316TP-Correlate_Clinical_vs_MutationRate10000
317TP-Correlate_Clinical_vs_RPPA10000
318TP-Correlate_CopyNumber_vs_miR10000
319TP-Correlate_CopyNumber_vs_mRNA10000
320TP-Correlate_CopyNumber_vs_mRNAseq10000
321TP-Correlate_Methylation_vs_mRNA01000
322TP-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
323TP-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
324TP-Correlate_molecularSubtype_vs_Mutation10000
325TP-Correlate_mRNAseq_vs_Mutation_APOBEC10000
326TP-GenerateStickFigures2.010000
327TP-GenerateStickFigures2CV10000
328TP-GenerateStickFiguresCV10000
329TP-iClusterPlus10000
330TP-LegoPlotter2.010000
331TP-LegoPlotter2CV10000
332TP-LegoPlotterCV10000
333TP-Methylation_Clustering_CNMF01000
334TP-miR_Clustering_CNMF10000
335TP-miR_Clustering_Consensus_Plus10000
336TP-miR_FindDirectTargets10000
337TP-miRseq_Clustering_CNMF01000
338TP-miRseq_Clustering_Consensus_Plus01000
339TP-miRseq_FindDirectTargets01000
340TP-miRseq_Mature_Clustering_CNMF01000
341TP-miRseq_Mature_Clustering_Consensus_Plus01000
342TP-mRNA_Clustering_CNMF10000
343TP-mRNA_Clustering_Consensus_Plus10000
344TP-mRNAseq_Clustering_CNMF01000
345TP-mRNAseq_Clustering_Consensus_Plus00010
346TP-Mutation_APOBEC10000
347TP-Mutation_Assessor10000
348TP-Mutation_CHASM10000
349TP-Mutation_CoOccurrence10000
350TP-Mutation_CoOccurrence_Custom10000
351TP-MutSigNozzleReport2.010000
352TP-MutSigNozzleReport2CV10000
353TP-MutSigNozzleReportCV10000
354TP-MutSigPreprocess2.001000
355TP-MutSigRun2.010000
356TP-MutSigRun2CV01000
357TP-MutSigRunCV01000
358TP-Paradigm_mRNA10000
359TP-Paradigm_mRNA_And_CopyNumber10000
360TP-Paradigm_Prepare_mRNA10000
361TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
362TP-Paradigm_Prepare_RNASeq10000
363TP-Paradigm_Prepare_RNASeq_And_Copy_Number10000
364TP-Paradigm_Preprocess_mRNA10000
365TP-ParadigmPreprocess_mRNA10000
366TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
367TP-ParadigmPreprocess_RNASeq01000
368TP-Paradigm_Preprocess_RNASeq10000
369TP-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
370TP-Paradigm_Report_Preprocess_mRNA10000
371TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
372TP-Paradigm_Report_Preprocess_RNASeq10000
373TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
374TP-Paradigm_RNASeq10000
375TP-Paradigm_RNASeq_And_Copy_Number10000
376TP-Pathway_FindEnrichedGenes10000
377TP-Pathway_GSEA_mRNAseq10000
378TP-Pathway_Hotnet10000
379TP-Pathway_Overlaps_MSigDB_MutSig2CV10000
380TP-Pathway_Paradigm_mRNA10000
381TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
382TP-Pathway_Paradigm_RNASeq10000
383TP-Pathway_Paradigm_RNASeq_And_Copy_Number10000
384TP-ProcessCoverageForMutSig2.010000
385TP-RPPA_Clustering_CNMF01000
386TP-RPPA_Clustering_Consensus_Plus01000
387TM-Aggregate_AnalysisFeatures01000
388TM-Aggregate_Gene_Status10000
389TM-Aggregate_Molecular_Subtype_Clusters10000
390TM-Append_CustomClinical01000
391TM-CoMut2.010000
392TM-CoMut2CV10000
393TM-CoMutCV10000
394TM-CopyNumber_Clustering_CNMF10000
395TM-CopyNumber_Clustering_CNMF_thresholded10000
396TM-CopyNumber_Gistic201000
397TM-CopyNumber_Gistic2_Postprocess_Focal10000
398TM-CopyNumberLowPass_Gistic210000
399TM-Correlate_Clinical_vs_CopyNumber_Arm10000
400TM-Correlate_Clinical_vs_CopyNumber_Focal10000
401TM-Correlate_Clinical_vs_Methylation10000
402TM-Correlate_Clinical_vs_miR10000
403TM-Correlate_Clinical_vs_miRseq10000
404TM-Correlate_Clinical_vs_Molecular_Subtypes10000
405TM-Correlate_Clinical_vs_mRNA10000
406TM-Correlate_Clinical_vs_mRNAseq10000
407TM-Correlate_Clinical_vs_Mutation10000
408TM-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
409TM-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
410TM-Correlate_Clinical_vs_MutationRate10000
411TM-Correlate_Clinical_vs_RPPA10000
412TM-Correlate_CopyNumber_vs_miR10000
413TM-Correlate_CopyNumber_vs_mRNA10000
414TM-Correlate_CopyNumber_vs_mRNAseq10000
415TM-Correlate_Methylation_vs_mRNA10000
416TM-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
417TM-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
418TM-Correlate_molecularSubtype_vs_Mutation10000
419TM-Correlate_mRNAseq_vs_Mutation_APOBEC10000
420TM-GenerateStickFigures2.010000
421TM-GenerateStickFigures2CV10000
422TM-GenerateStickFiguresCV10000
423TM-iClusterPlus10000
424TM-LegoPlotter2.010000
425TM-LegoPlotter2CV10000
426TM-LegoPlotterCV10000
427TM-Methylation_Clustering_CNMF01000
428TM-miR_Clustering_CNMF10000
429TM-miR_Clustering_Consensus_Plus10000
430TM-miR_FindDirectTargets10000
431TM-miRseq_Clustering_CNMF10000
432TM-miRseq_Clustering_Consensus_Plus10000
433TM-miRseq_FindDirectTargets10000
434TM-miRseq_Mature_Clustering_CNMF10000
435TM-miRseq_Mature_Clustering_Consensus_Plus10000
436TM-mRNA_Clustering_CNMF10000
437TM-mRNA_Clustering_Consensus_Plus10000
438TM-mRNAseq_Clustering_CNMF10000
439TM-mRNAseq_Clustering_Consensus_Plus10000
440TM-Mutation_APOBEC10000
441TM-Mutation_Assessor10000
442TM-Mutation_CHASM10000
443TM-Mutation_CoOccurrence10000
444TM-Mutation_CoOccurrence_Custom10000
445TM-MutSigNozzleReport2.010000
446TM-MutSigNozzleReport2CV10000
447TM-MutSigNozzleReportCV10000
448TM-MutSigPreprocess2.010000
449TM-MutSigRun2.010000
450TM-MutSigRun2CV10000
451TM-MutSigRunCV10000
452TM-Paradigm_mRNA10000
453TM-Paradigm_mRNA_And_CopyNumber10000
454TM-Paradigm_Prepare_mRNA10000
455TM-Paradigm_Prepare_mRNA_And_Copy_Number10000
456TM-Paradigm_Prepare_RNASeq10000
457TM-Paradigm_Prepare_RNASeq_And_Copy_Number10000
458TM-Paradigm_Preprocess_mRNA10000
459TM-ParadigmPreprocess_mRNA10000
460TM-Paradigm_Preprocess_mRNA_And_Copy_Number10000
461TM-ParadigmPreprocess_RNASeq01000
462TM-Paradigm_Preprocess_RNASeq10000
463TM-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
464TM-Paradigm_Report_Preprocess_mRNA10000
465TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
466TM-Paradigm_Report_Preprocess_RNASeq10000
467TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
468TM-Paradigm_RNASeq10000
469TM-Paradigm_RNASeq_And_Copy_Number10000
470TM-Pathway_FindEnrichedGenes10000
471TM-Pathway_GSEA_mRNAseq10000
472TM-Pathway_Hotnet10000
473TM-Pathway_Overlaps_MSigDB_MutSig2CV10000
474TM-Pathway_Paradigm_mRNA10000
475TM-Pathway_Paradigm_mRNA_And_Copy_Number10000
476TM-Pathway_Paradigm_RNASeq10000
477TM-Pathway_Paradigm_RNASeq_And_Copy_Number10000
478TM-ProcessCoverageForMutSig2.010000
479TM-RPPA_Clustering_CNMF10000
480TM-RPPA_Clustering_Consensus_Plus10000
481TAP-Aggregate_AnalysisFeatures01000
482TAP-Aggregate_Gene_Status10000
483TAP-Aggregate_Molecular_Subtype_Clusters10000
484TAP-Append_CustomClinical01000
485TAP-CoMut2.010000
486TAP-CoMut2CV10000
487TAP-CoMutCV10000
488TAP-CopyNumber_Clustering_CNMF10000
489TAP-CopyNumber_Clustering_CNMF_thresholded10000
490TAP-CopyNumber_Gistic201000
491TAP-CopyNumber_Gistic2_Postprocess_Focal10000
492TAP-CopyNumberLowPass_Gistic210000
493TAP-Correlate_Clinical_vs_CopyNumber_Arm10000
494TAP-Correlate_Clinical_vs_CopyNumber_Focal10000
495TAP-Correlate_Clinical_vs_Methylation10000
496TAP-Correlate_Clinical_vs_miR10000
497TAP-Correlate_Clinical_vs_miRseq10000
498TAP-Correlate_Clinical_vs_Molecular_Subtypes10000
499TAP-Correlate_Clinical_vs_mRNA10000
500TAP-Correlate_Clinical_vs_mRNAseq10000
501TAP-Correlate_Clinical_vs_Mutation10000
502TAP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
503TAP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
504TAP-Correlate_Clinical_vs_MutationRate10000
505TAP-Correlate_Clinical_vs_RPPA10000
506TAP-Correlate_CopyNumber_vs_miR10000
507TAP-Correlate_CopyNumber_vs_mRNA10000
508TAP-Correlate_CopyNumber_vs_mRNAseq10000
509TAP-Correlate_Methylation_vs_mRNA10000
510TAP-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
511TAP-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
512TAP-Correlate_molecularSubtype_vs_Mutation10000
513TAP-Correlate_mRNAseq_vs_Mutation_APOBEC10000
514TAP-GenerateStickFigures2.010000
515TAP-GenerateStickFigures2CV10000
516TAP-GenerateStickFiguresCV10000
517TAP-iClusterPlus10000
518TAP-LegoPlotter2.010000
519TAP-LegoPlotter2CV10000
520TAP-LegoPlotterCV10000
521TAP-Methylation_Clustering_CNMF01000
522TAP-miR_Clustering_CNMF10000
523TAP-miR_Clustering_Consensus_Plus10000
524TAP-miR_FindDirectTargets10000
525TAP-miRseq_Clustering_CNMF10000
526TAP-miRseq_Clustering_Consensus_Plus10000
527TAP-miRseq_FindDirectTargets10000
528TAP-miRseq_Mature_Clustering_CNMF10000
529TAP-miRseq_Mature_Clustering_Consensus_Plus10000
530TAP-mRNA_Clustering_CNMF10000
531TAP-mRNA_Clustering_Consensus_Plus10000
532TAP-mRNAseq_Clustering_CNMF10000
533TAP-mRNAseq_Clustering_Consensus_Plus10000
534TAP-Mutation_APOBEC10000
535TAP-Mutation_Assessor10000
536TAP-Mutation_CHASM10000
537TAP-Mutation_CoOccurrence10000
538TAP-Mutation_CoOccurrence_Custom10000
539TAP-MutSigNozzleReport2.010000
540TAP-MutSigNozzleReport2CV10000
541TAP-MutSigNozzleReportCV10000
542TAP-MutSigPreprocess2.010000
543TAP-MutSigRun2.010000
544TAP-MutSigRun2CV10000
545TAP-MutSigRunCV10000
546TAP-Paradigm_mRNA10000
547TAP-Paradigm_mRNA_And_CopyNumber10000
548TAP-Paradigm_Prepare_mRNA10000
549TAP-Paradigm_Prepare_mRNA_And_Copy_Number10000
550TAP-Paradigm_Prepare_RNASeq10000
551TAP-Paradigm_Prepare_RNASeq_And_Copy_Number10000
552TAP-Paradigm_Preprocess_mRNA10000
553TAP-ParadigmPreprocess_mRNA10000
554TAP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
555TAP-ParadigmPreprocess_RNASeq01000
556TAP-Paradigm_Preprocess_RNASeq10000
557TAP-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
558TAP-Paradigm_Report_Preprocess_mRNA10000
559TAP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
560TAP-Paradigm_Report_Preprocess_RNASeq10000
561TAP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
562TAP-Paradigm_RNASeq10000
563TAP-Paradigm_RNASeq_And_Copy_Number10000
564TAP-Pathway_FindEnrichedGenes10000
565TAP-Pathway_GSEA_mRNAseq10000
566TAP-Pathway_Hotnet10000
567TAP-Pathway_Overlaps_MSigDB_MutSig2CV10000
568TAP-Pathway_Paradigm_mRNA10000
569TAP-Pathway_Paradigm_mRNA_And_Copy_Number10000
570TAP-Pathway_Paradigm_RNASeq10000
571TAP-Pathway_Paradigm_RNASeq_And_Copy_Number10000
572TAP-ProcessCoverageForMutSig2.010000
573TAP-RPPA_Clustering_CNMF10000
574TAP-RPPA_Clustering_Consensus_Plus10000
575NT-Aggregate_AnalysisFeatures01000
576NT-Aggregate_Gene_Status10000
577NT-Aggregate_Molecular_Subtype_Clusters10000
578NT-Append_CustomClinical01000
579NT-CoMut2.010000
580NT-CoMut2CV10000
581NT-CoMutCV10000
582NT-CopyNumber_Clustering_CNMF10000
583NT-CopyNumber_Clustering_CNMF_thresholded10000
584NT-CopyNumber_Gistic201000
585NT-CopyNumber_Gistic2_Postprocess_Focal10000
586NT-CopyNumberLowPass_Gistic210000
587NT-Correlate_Clinical_vs_CopyNumber_Arm10000
588NT-Correlate_Clinical_vs_CopyNumber_Focal10000
589NT-Correlate_Clinical_vs_Methylation10000
590NT-Correlate_Clinical_vs_miR10000
591NT-Correlate_Clinical_vs_miRseq10000
592NT-Correlate_Clinical_vs_Molecular_Subtypes10000
593NT-Correlate_Clinical_vs_mRNA10000
594NT-Correlate_Clinical_vs_mRNAseq10000
595NT-Correlate_Clinical_vs_Mutation10000
596NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
597NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
598NT-Correlate_Clinical_vs_MutationRate10000
599NT-Correlate_Clinical_vs_RPPA10000
600NT-Correlate_CopyNumber_vs_miR10000
601NT-Correlate_CopyNumber_vs_mRNA10000
602NT-Correlate_CopyNumber_vs_mRNAseq10000
603NT-Correlate_Methylation_vs_mRNA10000
604NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
605NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
606NT-Correlate_molecularSubtype_vs_Mutation10000
607NT-Correlate_mRNAseq_vs_Mutation_APOBEC10000
608NT-GenerateStickFigures2.010000
609NT-GenerateStickFigures2CV10000
610NT-GenerateStickFiguresCV10000
611NT-iClusterPlus10000
612NT-LegoPlotter2.010000
613NT-LegoPlotter2CV10000
614NT-LegoPlotterCV10000
615NT-Methylation_Clustering_CNMF01000
616NT-miR_Clustering_CNMF10000
617NT-miR_Clustering_Consensus_Plus10000
618NT-miR_FindDirectTargets10000
619NT-miRseq_Clustering_CNMF10000
620NT-miRseq_Clustering_Consensus_Plus10000
621NT-miRseq_FindDirectTargets10000
622NT-miRseq_Mature_Clustering_CNMF10000
623NT-miRseq_Mature_Clustering_Consensus_Plus10000
624NT-mRNA_Clustering_CNMF10000
625NT-mRNA_Clustering_Consensus_Plus10000
626NT-mRNAseq_Clustering_CNMF10000
627NT-mRNAseq_Clustering_Consensus_Plus10000
628NT-Mutation_APOBEC10000
629NT-Mutation_Assessor10000
630NT-Mutation_CHASM10000
631NT-Mutation_CoOccurrence10000
632NT-Mutation_CoOccurrence_Custom10000
633NT-MutSigNozzleReport2.010000
634NT-MutSigNozzleReport2CV10000
635NT-MutSigNozzleReportCV10000
636NT-MutSigPreprocess2.010000
637NT-MutSigRun2.010000
638NT-MutSigRun2CV10000
639NT-MutSigRunCV10000
640NT-Paradigm_mRNA10000
641NT-Paradigm_mRNA_And_CopyNumber10000
642NT-Paradigm_Prepare_mRNA10000
643NT-Paradigm_Prepare_mRNA_And_Copy_Number10000
644NT-Paradigm_Prepare_RNASeq10000
645NT-Paradigm_Prepare_RNASeq_And_Copy_Number10000
646NT-Paradigm_Preprocess_mRNA10000
647NT-ParadigmPreprocess_mRNA10000
648NT-Paradigm_Preprocess_mRNA_And_Copy_Number10000
649NT-ParadigmPreprocess_RNASeq01000
650NT-Paradigm_Preprocess_RNASeq10000
651NT-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
652NT-Paradigm_Report_Preprocess_mRNA10000
653NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
654NT-Paradigm_Report_Preprocess_RNASeq10000
655NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
656NT-Paradigm_RNASeq10000
657NT-Paradigm_RNASeq_And_Copy_Number10000
658NT-Pathway_FindEnrichedGenes10000
659NT-Pathway_GSEA_mRNAseq10000
660NT-Pathway_Hotnet10000
661NT-Pathway_Overlaps_MSigDB_MutSig2CV10000
662NT-Pathway_Paradigm_mRNA10000
663NT-Pathway_Paradigm_mRNA_And_Copy_Number10000
664NT-Pathway_Paradigm_RNASeq10000
665NT-Pathway_Paradigm_RNASeq_And_Copy_Number10000
666NT-ProcessCoverageForMutSig2.010000
667NT-RPPA_Clustering_CNMF10000
668NT-RPPA_Clustering_Consensus_Plus10000
669NB-Aggregate_AnalysisFeatures01000
670NB-Aggregate_Gene_Status10000
671NB-Aggregate_Molecular_Subtype_Clusters10000
672NB-Append_CustomClinical01000
673NB-CoMut2.010000
674NB-CoMut2CV10000
675NB-CoMutCV10000
676NB-CopyNumber_Clustering_CNMF10000
677NB-CopyNumber_Clustering_CNMF_thresholded10000
678NB-CopyNumber_Gistic201000
679NB-CopyNumber_Gistic2_Postprocess_Focal10000
680NB-CopyNumberLowPass_Gistic210000
681NB-Correlate_Clinical_vs_CopyNumber_Arm10000
682NB-Correlate_Clinical_vs_CopyNumber_Focal10000
683NB-Correlate_Clinical_vs_Methylation10000
684NB-Correlate_Clinical_vs_miR10000
685NB-Correlate_Clinical_vs_miRseq10000
686NB-Correlate_Clinical_vs_Molecular_Subtypes10000
687NB-Correlate_Clinical_vs_mRNA10000
688NB-Correlate_Clinical_vs_mRNAseq10000
689NB-Correlate_Clinical_vs_Mutation10000
690NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
691NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
692NB-Correlate_Clinical_vs_MutationRate10000
693NB-Correlate_Clinical_vs_RPPA10000
694NB-Correlate_CopyNumber_vs_miR10000
695NB-Correlate_CopyNumber_vs_mRNA10000
696NB-Correlate_CopyNumber_vs_mRNAseq10000
697NB-Correlate_Methylation_vs_mRNA10000
698NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
699NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
700NB-Correlate_molecularSubtype_vs_Mutation10000
701NB-Correlate_mRNAseq_vs_Mutation_APOBEC10000
702NB-GenerateStickFigures2.010000
703NB-GenerateStickFigures2CV10000
704NB-GenerateStickFiguresCV10000
705NB-iClusterPlus10000
706NB-LegoPlotter2.010000
707NB-LegoPlotter2CV10000
708NB-LegoPlotterCV10000
709NB-Methylation_Clustering_CNMF10000
710NB-miR_Clustering_CNMF10000
711NB-miR_Clustering_Consensus_Plus10000
712NB-miR_FindDirectTargets10000
713NB-miRseq_Clustering_CNMF10000
714NB-miRseq_Clustering_Consensus_Plus10000
715NB-miRseq_FindDirectTargets10000
716NB-miRseq_Mature_Clustering_CNMF10000
717NB-miRseq_Mature_Clustering_Consensus_Plus10000
718NB-mRNA_Clustering_CNMF10000
719NB-mRNA_Clustering_Consensus_Plus10000
720NB-mRNAseq_Clustering_CNMF10000
721NB-mRNAseq_Clustering_Consensus_Plus10000
722NB-Mutation_APOBEC10000
723NB-Mutation_Assessor10000
724NB-Mutation_CHASM10000
725NB-Mutation_CoOccurrence10000
726NB-Mutation_CoOccurrence_Custom10000
727NB-MutSigNozzleReport2.010000
728NB-MutSigNozzleReport2CV10000
729NB-MutSigNozzleReportCV10000
730NB-MutSigPreprocess2.010000
731NB-MutSigRun2.010000
732NB-MutSigRun2CV10000
733NB-MutSigRunCV10000
734NB-Paradigm_mRNA10000
735NB-Paradigm_mRNA_And_CopyNumber10000
736NB-Paradigm_Prepare_mRNA10000
737NB-Paradigm_Prepare_mRNA_And_Copy_Number10000
738NB-Paradigm_Prepare_RNASeq10000
739NB-Paradigm_Prepare_RNASeq_And_Copy_Number10000
740NB-Paradigm_Preprocess_mRNA10000
741NB-ParadigmPreprocess_mRNA10000
742NB-Paradigm_Preprocess_mRNA_And_Copy_Number10000
743NB-Paradigm_Preprocess_RNASeq10000
744NB-ParadigmPreprocess_RNASeq10000
745NB-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
746NB-Paradigm_Report_Preprocess_mRNA10000
747NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
748NB-Paradigm_Report_Preprocess_RNASeq10000
749NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
750NB-Paradigm_RNASeq10000
751NB-Paradigm_RNASeq_And_Copy_Number10000
752NB-Pathway_FindEnrichedGenes10000
753NB-Pathway_GSEA_mRNAseq10000
754NB-Pathway_Hotnet10000
755NB-Pathway_Overlaps_MSigDB_MutSig2CV10000
756NB-Pathway_Paradigm_mRNA10000
757NB-Pathway_Paradigm_mRNA_And_Copy_Number10000
758NB-Pathway_Paradigm_RNASeq10000
759NB-Pathway_Paradigm_RNASeq_And_Copy_Number10000
760NB-ProcessCoverageForMutSig2.010000
761NB-RPPA_Clustering_CNMF10000
762NB-RPPA_Clustering_Consensus_Plus10000
Total6126306225

This table generated on Thu Jan 26 11:04:08 2017