Broad GDAC dev Run Status : SKCM

Cohort	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNASeq	miR	miRSeq	RPPA	MAF	rawMAF
SKCM	470	470	469	118	470	0	469	0	448	353	343	366

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Runnable	Successful	Unsuccessful
1	Aggregate_AnalysisFeatures	0	0	0	1
2	Aggregate_Molecular_Subtype_Clusters	0	0	1	0
3	CopyNumber_Clustering_CNMF	0	0	1	0
4	CopyNumber_Clustering_CNMF_thresholded	0	0	1	0
5	CopyNumber_Gistic2	0	0	1	0
6	CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
7	Correlate_Clinical_vs_CopyNumber_Arm	0	0	1	0
8	Correlate_Clinical_vs_CopyNumber_Focal	0	0	1	0
9	Correlate_Clinical_vs_Methylation	1	0	0	0
10	Correlate_Clinical_vs_miR	0	1	0	0
11	Correlate_Clinical_vs_Molecular_Subtypes	0	0	1	0
12	Correlate_Clinical_vs_mRNA	0	0	1	0
13	Correlate_Clinical_vs_Mutation	1	0	0	0
14	Correlate_CopyNumber_vs_miR	0	0	1	0
15	Correlate_CopyNumber_vs_mRNA	0	0	1	0
16	Correlate_Methylation_vs_mRNA	1	0	0	0
17	Correlate_molecularSubtype_vs_CopyNumber_Arm	0	0	1	0
18	Correlate_molecularSubtype_vs_CopyNumber_Focal	0	0	1	0
19	Methylation_Clustering_CNMF	1	0	0	0
20	Methylation_Preprocess	1	0	0	0
21	miR_FindDirectTargets	0	0	1	0
22	miR_Mature_Clustering_CNMF	0	0	1	0
23	miR_Mature_Clustering_Consensus_Plus	0	0	1	0
24	miR_Mature_Preprocess	0	0	1	0
25	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	1	0
26	mRNA_lincRNA_CNMF	0	0	1	0
27	mRNA_Preprocess	0	0	1	0
28	mRNA_protein_coding_Clustering_CNMF	0	0	1	0
29	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	1	0
30	Mutation_APOBEC	0	1	0	0
31	Mutation_CoOccurrence	1	0	0	0
32	Mutation_Signature	0	1	0	0
33	Pathway_GSEA_mRNA	0	0	1	0
34	Aggregate_AnalysisFeatures	0	0	1	0
35	Aggregate_Molecular_Subtype_Clusters	0	0	1	0
36	CopyNumber_Clustering_CNMF	0	0	1	0
37	CopyNumber_Clustering_CNMF_thresholded	0	0	1	0
38	CopyNumber_Gistic2	0	0	1	0
39	CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
40	Correlate_Clinical_vs_CopyNumber_Arm	0	0	1	0
41	Correlate_Clinical_vs_CopyNumber_Focal	0	0	1	0
42	Correlate_Clinical_vs_Methylation	1	0	0	0
43	Correlate_Clinical_vs_miR	0	1	0	0
44	Correlate_Clinical_vs_Molecular_Subtypes	0	0	1	0
45	Correlate_Clinical_vs_mRNA	0	0	1	0
46	Correlate_Clinical_vs_Mutation	1	0	0	0
47	Correlate_CopyNumber_vs_miR	0	0	1	0
48	Correlate_CopyNumber_vs_mRNA	0	0	1	0
49	Correlate_Methylation_vs_mRNA	1	0	0	0
50	Correlate_molecularSubtype_vs_CopyNumber_Arm	0	0	1	0
51	Correlate_molecularSubtype_vs_CopyNumber_Focal	0	0	1	0
52	Methylation_Clustering_CNMF	1	0	0	0
53	Methylation_Preprocess	1	0	0	0
54	miR_FindDirectTargets	0	0	1	0
55	miR_Mature_Clustering_CNMF	0	0	1	0
56	miR_Mature_Clustering_Consensus_Plus	0	0	1	0
57	miR_Mature_Preprocess	0	0	1	0
58	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	1	0
59	mRNA_lincRNA_CNMF	0	0	1	0
60	mRNA_Preprocess	0	0	1	0
61	mRNA_protein_coding_Clustering_CNMF	0	0	1	0
62	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	1	0
63	Mutation_APOBEC	0	1	0	0
64	Mutation_CoOccurrence	0	0	1	0
65	Mutation_Signature	0	1	0	0
66	Pathway_GSEA_mRNA	0	0	1	0
67	Aggregate_AnalysisFeatures	0	0	1	0
68	Aggregate_Molecular_Subtype_Clusters	0	0	1	0
69	CopyNumber_Clustering_CNMF	0	0	1	0
70	CopyNumber_Clustering_CNMF_thresholded	0	0	1	0
71	CopyNumber_Gistic2	0	0	1	0
72	CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
73	Correlate_Clinical_vs_CopyNumber_Arm	0	0	1	0
74	Correlate_Clinical_vs_CopyNumber_Focal	0	0	1	0
75	Correlate_Clinical_vs_Methylation	1	0	0	0
76	Correlate_Clinical_vs_miR	0	1	0	0
77	Correlate_Clinical_vs_Molecular_Subtypes	0	0	1	0
78	Correlate_Clinical_vs_mRNA	0	0	1	0
79	Correlate_Clinical_vs_Mutation	1	0	0	0
80	Correlate_CopyNumber_vs_miR	0	0	1	0
81	Correlate_CopyNumber_vs_mRNA	0	0	1	0
82	Correlate_Methylation_vs_mRNA	1	0	0	0
83	Correlate_molecularSubtype_vs_CopyNumber_Arm	0	0	1	0
84	Correlate_molecularSubtype_vs_CopyNumber_Focal	0	0	1	0
85	Methylation_Clustering_CNMF	1	0	0	0
86	Methylation_Preprocess	1	0	0	0
87	miR_FindDirectTargets	0	0	1	0
88	miR_Mature_Clustering_CNMF	0	0	1	0
89	miR_Mature_Clustering_Consensus_Plus	0	0	1	0
90	miR_Mature_Preprocess	0	0	1	0
91	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	1	0
92	mRNA_lincRNA_CNMF	0	0	1	0
93	mRNA_Preprocess	0	0	1	0
94	mRNA_protein_coding_Clustering_CNMF	0	0	1	0
95	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	1	0
96	Mutation_APOBEC	0	1	0	0
97	Mutation_CoOccurrence	0	0	1	0
98	Mutation_Signature	0	1	0	0
99	Pathway_GSEA_mRNA	0	0	1	0
100	Aggregate_AnalysisFeatures	0	0	0	1
101	Aggregate_Molecular_Subtype_Clusters	1	0	0	0
102	CopyNumber_Clustering_CNMF	1	0	0	0
103	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
104	CopyNumber_Gistic2	1	0	0	0
105	CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
106	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
107	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
108	Correlate_Clinical_vs_Methylation	1	0	0	0
109	Correlate_Clinical_vs_miR	1	0	0	0
110	Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
111	Correlate_Clinical_vs_mRNA	1	0	0	0
112	Correlate_Clinical_vs_Mutation	1	0	0	0
113	Correlate_CopyNumber_vs_miR	1	0	0	0
114	Correlate_CopyNumber_vs_mRNA	1	0	0	0
115	Correlate_Methylation_vs_mRNA	1	0	0	0
116	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
117	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
118	Methylation_Clustering_CNMF	1	0	0	0
119	Methylation_Preprocess	1	0	0	0
120	miR_FindDirectTargets	1	0	0	0
121	miR_Mature_Clustering_CNMF	1	0	0	0
122	miR_Mature_Clustering_Consensus_Plus	1	0	0	0
123	miR_Mature_Preprocess	0	0	1	0
124	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	0	1
125	mRNA_lincRNA_CNMF	0	0	0	1
126	mRNA_Preprocess	0	0	1	0
127	mRNA_protein_coding_Clustering_CNMF	0	0	0	1
128	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	0	1
129	Mutation_APOBEC	1	0	0	0
130	Mutation_CoOccurrence	1	0	0	0
131	Mutation_Signature	1	0	0	0
132	Pathway_GSEA_mRNA	1	0	0	0
133	Aggregate_AnalysisFeatures	0	1	0	0
134	Aggregate_Molecular_Subtype_Clusters	1	0	0	0
135	CopyNumber_Clustering_CNMF	1	0	0	0
136	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
137	CopyNumber_Gistic2	0	0	0	1
138	CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
139	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
140	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
141	Correlate_Clinical_vs_Methylation	1	0	0	0
142	Correlate_Clinical_vs_miR	1	0	0	0
143	Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
144	Correlate_Clinical_vs_mRNA	1	0	0	0
145	Correlate_Clinical_vs_Mutation	1	0	0	0
146	Correlate_CopyNumber_vs_miR	1	0	0	0
147	Correlate_CopyNumber_vs_mRNA	1	0	0	0
148	Correlate_Methylation_vs_mRNA	1	0	0	0
149	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
150	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
151	Methylation_Clustering_CNMF	1	0	0	0
152	Methylation_Preprocess	1	0	0	0
153	miR_FindDirectTargets	1	0	0	0
154	miR_Mature_Clustering_CNMF	1	0	0	0
155	miR_Mature_Clustering_Consensus_Plus	1	0	0	0
156	miR_Mature_Preprocess	0	0	1	0
157	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	0	1
158	mRNA_lincRNA_CNMF	0	0	0	1
159	mRNA_Preprocess	0	0	1	0
160	mRNA_protein_coding_Clustering_CNMF	0	0	0	1
161	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	0	1
162	Mutation_APOBEC	1	0	0	0
163	Mutation_CoOccurrence	1	0	0	0
164	Mutation_Signature	1	0	0	0
165	Pathway_GSEA_mRNA	1	0	0	0
166	Aggregate_AnalysisFeatures	0	1	0	0
167	Aggregate_Molecular_Subtype_Clusters	1	0	0	0
168	CopyNumber_Clustering_CNMF	1	0	0	0
169	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
170	CopyNumber_Gistic2	0	0	0	1
171	CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
172	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
173	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
174	Correlate_Clinical_vs_Methylation	1	0	0	0
175	Correlate_Clinical_vs_miR	1	0	0	0
176	Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
177	Correlate_Clinical_vs_mRNA	1	0	0	0
178	Correlate_Clinical_vs_Mutation	1	0	0	0
179	Correlate_CopyNumber_vs_miR	1	0	0	0
180	Correlate_CopyNumber_vs_mRNA	1	0	0	0
181	Correlate_Methylation_vs_mRNA	1	0	0	0
182	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
183	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
184	Methylation_Clustering_CNMF	1	0	0	0
185	Methylation_Preprocess	1	0	0	0
186	miR_FindDirectTargets	1	0	0	0
187	miR_Mature_Clustering_CNMF	1	0	0	0
188	miR_Mature_Clustering_Consensus_Plus	1	0	0	0
189	miR_Mature_Preprocess	1	0	0	0
190	mRNA_lincRNA_Clustering_Consensus_Plus	1	0	0	0
191	mRNA_lincRNA_CNMF	1	0	0	0
192	mRNA_Preprocess	1	0	0	0
193	mRNA_protein_coding_Clustering_CNMF	1	0	0	0
194	mRNA_protein_coding_Clustering_Consensus_Plus	1	0	0	0
195	Mutation_APOBEC	1	0	0	0
196	Mutation_CoOccurrence	1	0	0	0
197	Mutation_Signature	1	0	0	0
198	Pathway_GSEA_mRNA	1	0	0	0
199	Aggregate_AnalysisFeatures	0	1	0	0
200	Aggregate_Gene_Status	1	0	0	0
201	Aggregate_Molecular_Subtype_Clusters	0	1	0	0
202	Append_CustomClinical	0	1	0	0
203	CoMut2.0	1	0	0	0
204	CoMut2CV	1	0	0	0
205	CoMutCV	1	0	0	0
206	CopyNumber_Clustering_CNMF	1	0	0	0
207	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
208	CopyNumber_Gistic2	0	1	0	0
209	CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
210	CopyNumberLowPass_Gistic2	0	1	0	0
211	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
212	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
213	Correlate_Clinical_vs_Methylation	1	0	0	0
214	Correlate_Clinical_vs_miR	1	0	0	0
215	Correlate_Clinical_vs_miRseq	1	0	0	0
216	Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
217	Correlate_Clinical_vs_mRNA	1	0	0	0
218	Correlate_Clinical_vs_mRNAseq	1	0	0	0
219	Correlate_Clinical_vs_Mutation	1	0	0	0
220	Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
221	Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
222	Correlate_Clinical_vs_MutationRate	1	0	0	0
223	Correlate_Clinical_vs_RPPA	1	0	0	0
224	Correlate_CopyNumber_vs_miR	1	0	0	0
225	Correlate_CopyNumber_vs_mRNA	1	0	0	0
226	Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
227	Correlate_Methylation_vs_mRNA	0	1	0	0
228	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
229	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
230	Correlate_molecularSubtype_vs_Mutation	1	0	0	0
231	Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
232	GenerateStickFigures2.0	1	0	0	0
233	GenerateStickFigures2CV	1	0	0	0
234	GenerateStickFiguresCV	1	0	0	0
235	iClusterPlus	1	0	0	0
236	LegoPlotter2.0	1	0	0	0
237	LegoPlotter2CV	1	0	0	0
238	LegoPlotterCV	1	0	0	0
239	Methylation_Clustering_CNMF	0	1	0	0
240	miR_Clustering_CNMF	1	0	0	0
241	miR_Clustering_Consensus_Plus	1	0	0	0
242	miR_FindDirectTargets	1	0	0	0
243	miRseq_Clustering_CNMF	0	1	0	0
244	miRseq_Clustering_Consensus_Plus	0	1	0	0
245	miRseq_FindDirectTargets	0	1	0	0
246	miRseq_Mature_Clustering_CNMF	0	1	0	0
247	miRseq_Mature_Clustering_Consensus_Plus	0	1	0	0
248	mRNA_Clustering_CNMF	1	0	0	0
249	mRNA_Clustering_Consensus_Plus	1	0	0	0
250	mRNAseq_Clustering_CNMF	0	1	0	0
251	mRNAseq_Clustering_Consensus_Plus	0	0	1	0
252	Mutation_APOBEC	1	0	0	0
253	Mutation_Assessor	1	0	0	0
254	Mutation_CHASM	1	0	0	0
255	Mutation_CoOccurrence	1	0	0	0
256	Mutation_CoOccurrence_Custom	1	0	0	0
257	MutSigNozzleReport2.0	1	0	0	0
258	MutSigNozzleReport2CV	1	0	0	0
259	MutSigNozzleReportCV	1	0	0	0
260	MutSigPreprocess2.0	1	0	0	0
261	MutSigRun2.0	1	0	0	0
262	MutSigRun2CV	1	0	0	0
263	MutSigRunCV	1	0	0	0
264	Paradigm_mRNA	1	0	0	0
265	Paradigm_mRNA_And_CopyNumber	1	0	0	0
266	Paradigm_Prepare_mRNA	1	0	0	0
267	Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
268	Paradigm_Prepare_RNASeq	1	0	0	0
269	Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
270	Paradigm_Preprocess_mRNA	1	0	0	0
271	ParadigmPreprocess_mRNA	1	0	0	0
272	Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
273	ParadigmPreprocess_RNASeq	0	1	0	0
274	Paradigm_Preprocess_RNASeq	1	0	0	0
275	Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
276	Paradigm_Report_Preprocess_mRNA	1	0	0	0
277	Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
278	Paradigm_Report_Preprocess_RNASeq	1	0	0	0
279	Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
280	Paradigm_RNASeq	1	0	0	0
281	Paradigm_RNASeq_And_Copy_Number	1	0	0	0
282	Pathway_FindEnrichedGenes	1	0	0	0
283	Pathway_GSEA_mRNAseq	1	0	0	0
284	Pathway_Hotnet	1	0	0	0
285	Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
286	Pathway_Paradigm_mRNA	1	0	0	0
287	Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
288	Pathway_Paradigm_RNASeq	1	0	0	0
289	Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
290	ProcessCoverageForMutSig2.0	1	0	0	0
291	RPPA_Clustering_CNMF	0	1	0	0
292	RPPA_Clustering_Consensus_Plus	0	1	0	0
293	TP-Aggregate_AnalysisFeatures	0	1	0	0
294	TP-Aggregate_Gene_Status	1	0	0	0
295	TP-Aggregate_Molecular_Subtype_Clusters	0	1	0	0
296	TP-Append_CustomClinical	0	1	0	0
297	TP-CoMut2.0	1	0	0	0
298	TP-CoMut2CV	1	0	0	0
299	TP-CoMutCV	1	0	0	0
300	TP-CopyNumber_Clustering_CNMF	1	0	0	0
301	TP-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
302	TP-CopyNumber_Gistic2	0	1	0	0
303	TP-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
304	TP-CopyNumberLowPass_Gistic2	0	1	0	0
305	TP-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
306	TP-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
307	TP-Correlate_Clinical_vs_Methylation	1	0	0	0
308	TP-Correlate_Clinical_vs_miR	1	0	0	0
309	TP-Correlate_Clinical_vs_miRseq	1	0	0	0
310	TP-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
311	TP-Correlate_Clinical_vs_mRNA	1	0	0	0
312	TP-Correlate_Clinical_vs_mRNAseq	1	0	0	0
313	TP-Correlate_Clinical_vs_Mutation	1	0	0	0
314	TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
315	TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
316	TP-Correlate_Clinical_vs_MutationRate	1	0	0	0
317	TP-Correlate_Clinical_vs_RPPA	1	0	0	0
318	TP-Correlate_CopyNumber_vs_miR	1	0	0	0
319	TP-Correlate_CopyNumber_vs_mRNA	1	0	0	0
320	TP-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
321	TP-Correlate_Methylation_vs_mRNA	0	1	0	0
322	TP-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
323	TP-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
324	TP-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
325	TP-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
326	TP-GenerateStickFigures2.0	1	0	0	0
327	TP-GenerateStickFigures2CV	1	0	0	0
328	TP-GenerateStickFiguresCV	1	0	0	0
329	TP-iClusterPlus	1	0	0	0
330	TP-LegoPlotter2.0	1	0	0	0
331	TP-LegoPlotter2CV	1	0	0	0
332	TP-LegoPlotterCV	1	0	0	0
333	TP-Methylation_Clustering_CNMF	0	1	0	0
334	TP-miR_Clustering_CNMF	1	0	0	0
335	TP-miR_Clustering_Consensus_Plus	1	0	0	0
336	TP-miR_FindDirectTargets	1	0	0	0
337	TP-miRseq_Clustering_CNMF	0	1	0	0
338	TP-miRseq_Clustering_Consensus_Plus	0	1	0	0
339	TP-miRseq_FindDirectTargets	0	1	0	0
340	TP-miRseq_Mature_Clustering_CNMF	0	1	0	0
341	TP-miRseq_Mature_Clustering_Consensus_Plus	0	1	0	0
342	TP-mRNA_Clustering_CNMF	1	0	0	0
343	TP-mRNA_Clustering_Consensus_Plus	1	0	0	0
344	TP-mRNAseq_Clustering_CNMF	0	1	0	0
345	TP-mRNAseq_Clustering_Consensus_Plus	0	0	1	0
346	TP-Mutation_APOBEC	1	0	0	0
347	TP-Mutation_Assessor	1	0	0	0
348	TP-Mutation_CHASM	1	0	0	0
349	TP-Mutation_CoOccurrence	1	0	0	0
350	TP-Mutation_CoOccurrence_Custom	1	0	0	0
351	TP-MutSigNozzleReport2.0	1	0	0	0
352	TP-MutSigNozzleReport2CV	1	0	0	0
353	TP-MutSigNozzleReportCV	1	0	0	0
354	TP-MutSigPreprocess2.0	1	0	0	0
355	TP-MutSigRun2.0	1	0	0	0
356	TP-MutSigRun2CV	1	0	0	0
357	TP-MutSigRunCV	1	0	0	0
358	TP-Paradigm_mRNA	1	0	0	0
359	TP-Paradigm_mRNA_And_CopyNumber	1	0	0	0
360	TP-Paradigm_Prepare_mRNA	1	0	0	0
361	TP-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
362	TP-Paradigm_Prepare_RNASeq	1	0	0	0
363	TP-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
364	TP-Paradigm_Preprocess_mRNA	1	0	0	0
365	TP-ParadigmPreprocess_mRNA	1	0	0	0
366	TP-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
367	TP-ParadigmPreprocess_RNASeq	0	1	0	0
368	TP-Paradigm_Preprocess_RNASeq	1	0	0	0
369	TP-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
370	TP-Paradigm_Report_Preprocess_mRNA	1	0	0	0
371	TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
372	TP-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
373	TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
374	TP-Paradigm_RNASeq	1	0	0	0
375	TP-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
376	TP-Pathway_FindEnrichedGenes	1	0	0	0
377	TP-Pathway_GSEA_mRNAseq	1	0	0	0
378	TP-Pathway_Hotnet	1	0	0	0
379	TP-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
380	TP-Pathway_Paradigm_mRNA	1	0	0	0
381	TP-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
382	TP-Pathway_Paradigm_RNASeq	1	0	0	0
383	TP-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
384	TP-ProcessCoverageForMutSig2.0	1	0	0	0
385	TP-RPPA_Clustering_CNMF	0	1	0	0
386	TP-RPPA_Clustering_Consensus_Plus	0	1	0	0
387	TM-Aggregate_AnalysisFeatures	0	1	0	0
388	TM-Aggregate_Gene_Status	1	0	0	0
389	TM-Aggregate_Molecular_Subtype_Clusters	0	1	0	0
390	TM-Append_CustomClinical	0	1	0	0
391	TM-CoMut2.0	1	0	0	0
392	TM-CoMut2CV	1	0	0	0
393	TM-CoMutCV	1	0	0	0
394	TM-CopyNumber_Clustering_CNMF	1	0	0	0
395	TM-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
396	TM-CopyNumber_Gistic2	0	1	0	0
397	TM-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
398	TM-CopyNumberLowPass_Gistic2	0	1	0	0
399	TM-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
400	TM-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
401	TM-Correlate_Clinical_vs_Methylation	1	0	0	0
402	TM-Correlate_Clinical_vs_miR	1	0	0	0
403	TM-Correlate_Clinical_vs_miRseq	1	0	0	0
404	TM-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
405	TM-Correlate_Clinical_vs_mRNA	1	0	0	0
406	TM-Correlate_Clinical_vs_mRNAseq	1	0	0	0
407	TM-Correlate_Clinical_vs_Mutation	1	0	0	0
408	TM-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
409	TM-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
410	TM-Correlate_Clinical_vs_MutationRate	1	0	0	0
411	TM-Correlate_Clinical_vs_RPPA	1	0	0	0
412	TM-Correlate_CopyNumber_vs_miR	1	0	0	0
413	TM-Correlate_CopyNumber_vs_mRNA	1	0	0	0
414	TM-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
415	TM-Correlate_Methylation_vs_mRNA	0	1	0	0
416	TM-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
417	TM-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
418	TM-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
419	TM-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
420	TM-GenerateStickFigures2.0	1	0	0	0
421	TM-GenerateStickFigures2CV	1	0	0	0
422	TM-GenerateStickFiguresCV	1	0	0	0
423	TM-iClusterPlus	1	0	0	0
424	TM-LegoPlotter2.0	1	0	0	0
425	TM-LegoPlotter2CV	1	0	0	0
426	TM-LegoPlotterCV	1	0	0	0
427	TM-Methylation_Clustering_CNMF	0	1	0	0
428	TM-miR_Clustering_CNMF	1	0	0	0
429	TM-miR_Clustering_Consensus_Plus	1	0	0	0
430	TM-miR_FindDirectTargets	1	0	0	0
431	TM-miRseq_Clustering_CNMF	0	1	0	0
432	TM-miRseq_Clustering_Consensus_Plus	0	1	0	0
433	TM-miRseq_FindDirectTargets	0	1	0	0
434	TM-miRseq_Mature_Clustering_CNMF	0	1	0	0
435	TM-miRseq_Mature_Clustering_Consensus_Plus	0	1	0	0
436	TM-mRNA_Clustering_CNMF	1	0	0	0
437	TM-mRNA_Clustering_Consensus_Plus	1	0	0	0
438	TM-mRNAseq_Clustering_CNMF	0	1	0	0
439	TM-mRNAseq_Clustering_Consensus_Plus	0	0	1	0
440	TM-Mutation_APOBEC	1	0	0	0
441	TM-Mutation_Assessor	1	0	0	0
442	TM-Mutation_CHASM	1	0	0	0
443	TM-Mutation_CoOccurrence	1	0	0	0
444	TM-Mutation_CoOccurrence_Custom	1	0	0	0
445	TM-MutSigNozzleReport2.0	1	0	0	0
446	TM-MutSigNozzleReport2CV	1	0	0	0
447	TM-MutSigNozzleReportCV	1	0	0	0
448	TM-MutSigPreprocess2.0	0	1	0	0
449	TM-MutSigRun2.0	1	0	0	0
450	TM-MutSigRun2CV	0	1	0	0
451	TM-MutSigRunCV	0	1	0	0
452	TM-Paradigm_mRNA	1	0	0	0
453	TM-Paradigm_mRNA_And_CopyNumber	1	0	0	0
454	TM-Paradigm_Prepare_mRNA	1	0	0	0
455	TM-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
456	TM-Paradigm_Prepare_RNASeq	1	0	0	0
457	TM-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
458	TM-Paradigm_Preprocess_mRNA	1	0	0	0
459	TM-ParadigmPreprocess_mRNA	1	0	0	0
460	TM-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
461	TM-ParadigmPreprocess_RNASeq	0	1	0	0
462	TM-Paradigm_Preprocess_RNASeq	1	0	0	0
463	TM-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
464	TM-Paradigm_Report_Preprocess_mRNA	1	0	0	0
465	TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
466	TM-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
467	TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
468	TM-Paradigm_RNASeq	1	0	0	0
469	TM-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
470	TM-Pathway_FindEnrichedGenes	1	0	0	0
471	TM-Pathway_GSEA_mRNAseq	1	0	0	0
472	TM-Pathway_Hotnet	1	0	0	0
473	TM-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
474	TM-Pathway_Paradigm_mRNA	1	0	0	0
475	TM-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
476	TM-Pathway_Paradigm_RNASeq	1	0	0	0
477	TM-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
478	TM-ProcessCoverageForMutSig2.0	1	0	0	0
479	TM-RPPA_Clustering_CNMF	0	1	0	0
480	TM-RPPA_Clustering_Consensus_Plus	0	1	0	0
481	TAM-Aggregate_AnalysisFeatures	0	1	0	0
482	TAM-Aggregate_Gene_Status	1	0	0	0
483	TAM-Aggregate_Molecular_Subtype_Clusters	1	0	0	0
484	TAM-Append_CustomClinical	0	1	0	0
485	TAM-CoMut2.0	1	0	0	0
486	TAM-CoMut2CV	1	0	0	0
487	TAM-CoMutCV	1	0	0	0
488	TAM-CopyNumber_Clustering_CNMF	1	0	0	0
489	TAM-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
490	TAM-CopyNumber_Gistic2	1	0	0	0
491	TAM-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
492	TAM-CopyNumberLowPass_Gistic2	1	0	0	0
493	TAM-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
494	TAM-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
495	TAM-Correlate_Clinical_vs_Methylation	1	0	0	0
496	TAM-Correlate_Clinical_vs_miR	1	0	0	0
497	TAM-Correlate_Clinical_vs_miRseq	1	0	0	0
498	TAM-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
499	TAM-Correlate_Clinical_vs_mRNA	1	0	0	0
500	TAM-Correlate_Clinical_vs_mRNAseq	1	0	0	0
501	TAM-Correlate_Clinical_vs_Mutation	1	0	0	0
502	TAM-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
503	TAM-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
504	TAM-Correlate_Clinical_vs_MutationRate	1	0	0	0
505	TAM-Correlate_Clinical_vs_RPPA	1	0	0	0
506	TAM-Correlate_CopyNumber_vs_miR	1	0	0	0
507	TAM-Correlate_CopyNumber_vs_mRNA	1	0	0	0
508	TAM-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
509	TAM-Correlate_Methylation_vs_mRNA	1	0	0	0
510	TAM-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
511	TAM-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
512	TAM-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
513	TAM-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
514	TAM-GenerateStickFigures2.0	1	0	0	0
515	TAM-GenerateStickFigures2CV	1	0	0	0
516	TAM-GenerateStickFiguresCV	1	0	0	0
517	TAM-iClusterPlus	1	0	0	0
518	TAM-LegoPlotter2.0	1	0	0	0
519	TAM-LegoPlotter2CV	1	0	0	0
520	TAM-LegoPlotterCV	1	0	0	0
521	TAM-Methylation_Clustering_CNMF	0	1	0	0
522	TAM-miR_Clustering_CNMF	1	0	0	0
523	TAM-miR_Clustering_Consensus_Plus	1	0	0	0
524	TAM-miR_FindDirectTargets	1	0	0	0
525	TAM-miRseq_Clustering_CNMF	1	0	0	0
526	TAM-miRseq_Clustering_Consensus_Plus	1	0	0	0
527	TAM-miRseq_FindDirectTargets	1	0	0	0
528	TAM-miRseq_Mature_Clustering_CNMF	1	0	0	0
529	TAM-miRseq_Mature_Clustering_Consensus_Plus	1	0	0	0
530	TAM-mRNA_Clustering_CNMF	1	0	0	0
531	TAM-mRNA_Clustering_Consensus_Plus	1	0	0	0
532	TAM-mRNAseq_Clustering_CNMF	1	0	0	0
533	TAM-mRNAseq_Clustering_Consensus_Plus	1	0	0	0
534	TAM-Mutation_APOBEC	1	0	0	0
535	TAM-Mutation_Assessor	1	0	0	0
536	TAM-Mutation_CHASM	1	0	0	0
537	TAM-Mutation_CoOccurrence	1	0	0	0
538	TAM-Mutation_CoOccurrence_Custom	1	0	0	0
539	TAM-MutSigNozzleReport2.0	1	0	0	0
540	TAM-MutSigNozzleReport2CV	1	0	0	0
541	TAM-MutSigNozzleReportCV	1	0	0	0
542	TAM-MutSigPreprocess2.0	1	0	0	0
543	TAM-MutSigRun2.0	1	0	0	0
544	TAM-MutSigRun2CV	1	0	0	0
545	TAM-MutSigRunCV	1	0	0	0
546	TAM-Paradigm_mRNA	1	0	0	0
547	TAM-Paradigm_mRNA_And_CopyNumber	1	0	0	0
548	TAM-Paradigm_Prepare_mRNA	1	0	0	0
549	TAM-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
550	TAM-Paradigm_Prepare_RNASeq	1	0	0	0
551	TAM-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
552	TAM-Paradigm_Preprocess_mRNA	1	0	0	0
553	TAM-ParadigmPreprocess_mRNA	1	0	0	0
554	TAM-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
555	TAM-ParadigmPreprocess_RNASeq	0	1	0	0
556	TAM-Paradigm_Preprocess_RNASeq	1	0	0	0
557	TAM-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
558	TAM-Paradigm_Report_Preprocess_mRNA	1	0	0	0
559	TAM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
560	TAM-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
561	TAM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
562	TAM-Paradigm_RNASeq	1	0	0	0
563	TAM-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
564	TAM-Pathway_FindEnrichedGenes	1	0	0	0
565	TAM-Pathway_GSEA_mRNAseq	1	0	0	0
566	TAM-Pathway_Hotnet	1	0	0	0
567	TAM-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
568	TAM-Pathway_Paradigm_mRNA	1	0	0	0
569	TAM-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
570	TAM-Pathway_Paradigm_RNASeq	1	0	0	0
571	TAM-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
572	TAM-ProcessCoverageForMutSig2.0	1	0	0	0
573	TAM-RPPA_Clustering_CNMF	1	0	0	0
574	TAM-RPPA_Clustering_Consensus_Plus	1	0	0	0
575	NT-Aggregate_AnalysisFeatures	0	1	0	0
576	NT-Aggregate_Gene_Status	1	0	0	0
577	NT-Aggregate_Molecular_Subtype_Clusters	1	0	0	0
578	NT-Append_CustomClinical	1	0	0	0
579	NT-CoMut2.0	1	0	0	0
580	NT-CoMut2CV	1	0	0	0
581	NT-CoMutCV	1	0	0	0
582	NT-CopyNumber_Clustering_CNMF	1	0	0	0
583	NT-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
584	NT-CopyNumber_Gistic2	0	1	0	0
585	NT-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
586	NT-CopyNumberLowPass_Gistic2	1	0	0	0
587	NT-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
588	NT-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
589	NT-Correlate_Clinical_vs_Methylation	1	0	0	0
590	NT-Correlate_Clinical_vs_miR	1	0	0	0
591	NT-Correlate_Clinical_vs_miRseq	1	0	0	0
592	NT-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
593	NT-Correlate_Clinical_vs_mRNA	1	0	0	0
594	NT-Correlate_Clinical_vs_mRNAseq	1	0	0	0
595	NT-Correlate_Clinical_vs_Mutation	1	0	0	0
596	NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
597	NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
598	NT-Correlate_Clinical_vs_MutationRate	1	0	0	0
599	NT-Correlate_Clinical_vs_RPPA	1	0	0	0
600	NT-Correlate_CopyNumber_vs_miR	1	0	0	0
601	NT-Correlate_CopyNumber_vs_mRNA	1	0	0	0
602	NT-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
603	NT-Correlate_Methylation_vs_mRNA	1	0	0	0
604	NT-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
605	NT-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
606	NT-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
607	NT-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
608	NT-GenerateStickFigures2.0	1	0	0	0
609	NT-GenerateStickFigures2CV	1	0	0	0
610	NT-GenerateStickFiguresCV	1	0	0	0
611	NT-iClusterPlus	1	0	0	0
612	NT-LegoPlotter2.0	1	0	0	0
613	NT-LegoPlotter2CV	1	0	0	0
614	NT-LegoPlotterCV	1	0	0	0
615	NT-Methylation_Clustering_CNMF	0	1	0	0
616	NT-miR_Clustering_CNMF	1	0	0	0
617	NT-miR_Clustering_Consensus_Plus	1	0	0	0
618	NT-miR_FindDirectTargets	1	0	0	0
619	NT-miRseq_Clustering_CNMF	1	0	0	0
620	NT-miRseq_Clustering_Consensus_Plus	1	0	0	0
621	NT-miRseq_FindDirectTargets	1	0	0	0
622	NT-miRseq_Mature_Clustering_CNMF	1	0	0	0
623	NT-miRseq_Mature_Clustering_Consensus_Plus	1	0	0	0
624	NT-mRNA_Clustering_CNMF	1	0	0	0
625	NT-mRNA_Clustering_Consensus_Plus	1	0	0	0
626	NT-mRNAseq_Clustering_CNMF	1	0	0	0
627	NT-mRNAseq_Clustering_Consensus_Plus	1	0	0	0
628	NT-Mutation_APOBEC	1	0	0	0
629	NT-Mutation_Assessor	1	0	0	0
630	NT-Mutation_CHASM	1	0	0	0
631	NT-Mutation_CoOccurrence	1	0	0	0
632	NT-Mutation_CoOccurrence_Custom	1	0	0	0
633	NT-MutSigNozzleReport2.0	1	0	0	0
634	NT-MutSigNozzleReport2CV	1	0	0	0
635	NT-MutSigNozzleReportCV	1	0	0	0
636	NT-MutSigPreprocess2.0	1	0	0	0
637	NT-MutSigRun2.0	1	0	0	0
638	NT-MutSigRun2CV	1	0	0	0
639	NT-MutSigRunCV	1	0	0	0
640	NT-Paradigm_mRNA	1	0	0	0
641	NT-Paradigm_mRNA_And_CopyNumber	1	0	0	0
642	NT-Paradigm_Prepare_mRNA	1	0	0	0
643	NT-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
644	NT-Paradigm_Prepare_RNASeq	1	0	0	0
645	NT-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
646	NT-Paradigm_Preprocess_mRNA	1	0	0	0
647	NT-ParadigmPreprocess_mRNA	1	0	0	0
648	NT-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
649	NT-ParadigmPreprocess_RNASeq	0	1	0	0
650	NT-Paradigm_Preprocess_RNASeq	1	0	0	0
651	NT-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
652	NT-Paradigm_Report_Preprocess_mRNA	1	0	0	0
653	NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
654	NT-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
655	NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
656	NT-Paradigm_RNASeq	1	0	0	0
657	NT-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
658	NT-Pathway_FindEnrichedGenes	1	0	0	0
659	NT-Pathway_GSEA_mRNAseq	1	0	0	0
660	NT-Pathway_Hotnet	1	0	0	0
661	NT-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
662	NT-Pathway_Paradigm_mRNA	1	0	0	0
663	NT-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
664	NT-Pathway_Paradigm_RNASeq	1	0	0	0
665	NT-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
666	NT-ProcessCoverageForMutSig2.0	1	0	0	0
667	NT-RPPA_Clustering_CNMF	1	0	0	0
668	NT-RPPA_Clustering_Consensus_Plus	1	0	0	0
669	NB-Aggregate_AnalysisFeatures	0	1	0	0
670	NB-Aggregate_Gene_Status	1	0	0	0
671	NB-Aggregate_Molecular_Subtype_Clusters	1	0	0	0
672	NB-Append_CustomClinical	0	1	0	0
673	NB-CoMut2.0	1	0	0	0
674	NB-CoMut2CV	1	0	0	0
675	NB-CoMutCV	1	0	0	0
676	NB-CopyNumber_Clustering_CNMF	1	0	0	0
677	NB-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
678	NB-CopyNumber_Gistic2	0	1	0	0
679	NB-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
680	NB-CopyNumberLowPass_Gistic2	0	1	0	0
681	NB-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
682	NB-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
683	NB-Correlate_Clinical_vs_Methylation	1	0	0	0
684	NB-Correlate_Clinical_vs_miR	1	0	0	0
685	NB-Correlate_Clinical_vs_miRseq	1	0	0	0
686	NB-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
687	NB-Correlate_Clinical_vs_mRNA	1	0	0	0
688	NB-Correlate_Clinical_vs_mRNAseq	1	0	0	0
689	NB-Correlate_Clinical_vs_Mutation	1	0	0	0
690	NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
691	NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
692	NB-Correlate_Clinical_vs_MutationRate	1	0	0	0
693	NB-Correlate_Clinical_vs_RPPA	1	0	0	0
694	NB-Correlate_CopyNumber_vs_miR	1	0	0	0
695	NB-Correlate_CopyNumber_vs_mRNA	1	0	0	0
696	NB-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
697	NB-Correlate_Methylation_vs_mRNA	1	0	0	0
698	NB-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
699	NB-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
700	NB-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
701	NB-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
702	NB-GenerateStickFigures2.0	1	0	0	0
703	NB-GenerateStickFigures2CV	1	0	0	0
704	NB-GenerateStickFiguresCV	1	0	0	0
705	NB-iClusterPlus	1	0	0	0
706	NB-LegoPlotter2.0	1	0	0	0
707	NB-LegoPlotter2CV	1	0	0	0
708	NB-LegoPlotterCV	1	0	0	0
709	NB-Methylation_Clustering_CNMF	1	0	0	0
710	NB-miR_Clustering_CNMF	1	0	0	0
711	NB-miR_Clustering_Consensus_Plus	1	0	0	0
712	NB-miR_FindDirectTargets	1	0	0	0
713	NB-miRseq_Clustering_CNMF	1	0	0	0
714	NB-miRseq_Clustering_Consensus_Plus	1	0	0	0
715	NB-miRseq_FindDirectTargets	1	0	0	0
716	NB-miRseq_Mature_Clustering_CNMF	1	0	0	0
717	NB-miRseq_Mature_Clustering_Consensus_Plus	1	0	0	0
718	NB-mRNA_Clustering_CNMF	1	0	0	0
719	NB-mRNA_Clustering_Consensus_Plus	1	0	0	0
720	NB-mRNAseq_Clustering_CNMF	1	0	0	0
721	NB-mRNAseq_Clustering_Consensus_Plus	1	0	0	0
722	NB-Mutation_APOBEC	1	0	0	0
723	NB-Mutation_Assessor	1	0	0	0
724	NB-Mutation_CHASM	1	0	0	0
725	NB-Mutation_CoOccurrence	1	0	0	0
726	NB-Mutation_CoOccurrence_Custom	1	0	0	0
727	NB-MutSigNozzleReport2.0	1	0	0	0
728	NB-MutSigNozzleReport2CV	1	0	0	0
729	NB-MutSigNozzleReportCV	1	0	0	0
730	NB-MutSigPreprocess2.0	1	0	0	0
731	NB-MutSigRun2.0	1	0	0	0
732	NB-MutSigRun2CV	1	0	0	0
733	NB-MutSigRunCV	1	0	0	0
734	NB-Paradigm_mRNA	1	0	0	0
735	NB-Paradigm_mRNA_And_CopyNumber	1	0	0	0
736	NB-Paradigm_Prepare_mRNA	1	0	0	0
737	NB-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
738	NB-Paradigm_Prepare_RNASeq	1	0	0	0
739	NB-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
740	NB-Paradigm_Preprocess_mRNA	1	0	0	0
741	NB-ParadigmPreprocess_mRNA	1	0	0	0
742	NB-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
743	NB-Paradigm_Preprocess_RNASeq	1	0	0	0
744	NB-ParadigmPreprocess_RNASeq	1	0	0	0
745	NB-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
746	NB-Paradigm_Report_Preprocess_mRNA	1	0	0	0
747	NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
748	NB-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
749	NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
750	NB-Paradigm_RNASeq	1	0	0	0
751	NB-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
752	NB-Pathway_FindEnrichedGenes	1	0	0	0
753	NB-Pathway_GSEA_mRNAseq	1	0	0	0
754	NB-Pathway_Hotnet	1	0	0	0
755	NB-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
756	NB-Pathway_Paradigm_mRNA	1	0	0	0
757	NB-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
758	NB-Pathway_Paradigm_RNASeq	1	0	0	0
759	NB-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
760	NB-ProcessCoverageForMutSig2.0	1	0	0	0
761	NB-RPPA_Clustering_CNMF	1	0	0	0
762	NB-RPPA_Clustering_Consensus_Plus	1	0	0	0
	Total	596	74	80	12

This table generated on Thu Jan 26 11:04:12 2017

Broad GDAC Analyses Status dev Run for Tumor Type: SKCM

Broad GDAC Analyses Status
dev Run for Tumor Type: SKCM