Broad GDAC Analyses Status
dev Run for Tumor Type: STAD
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
STAD
443
443
442
107
443
0
415
0
436
357
289
395
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
0
0
1
0
2
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
3
CopyNumber_Clustering_CNMF
0
0
0
1
0
4
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
5
CopyNumber_Gistic2
0
0
0
1
0
6
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
7
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
8
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
9
Correlate_Clinical_vs_Methylation
1
0
0
0
0
10
Correlate_Clinical_vs_miR
0
1
0
0
0
11
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
12
Correlate_Clinical_vs_mRNA
0
0
0
1
0
13
Correlate_Clinical_vs_Mutation
1
0
0
0
0
14
Correlate_CopyNumber_vs_miR
0
0
0
1
0
15
Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
16
Correlate_Methylation_vs_mRNA
1
0
0
0
0
17
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
18
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
19
Methylation_Clustering_CNMF
1
0
0
0
0
20
Methylation_Preprocess
1
0
0
0
0
21
miR_FindDirectTargets
0
0
0
1
0
22
miR_Mature_Clustering_CNMF
0
0
0
1
0
23
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
24
miR_Mature_Preprocess
0
0
0
1
0
25
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
26
mRNA_lincRNA_CNMF
0
0
0
1
0
27
mRNA_Preprocess
0
0
0
1
0
28
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
29
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
30
Mutation_APOBEC
0
1
0
0
0
31
Mutation_CoOccurrence
0
0
0
1
0
32
Mutation_Signature
0
1
0
0
0
33
Pathway_GSEA_mRNA
0
0
0
1
0
34
Aggregate_AnalysisFeatures
0
0
0
1
0
35
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
36
CopyNumber_Clustering_CNMF
0
0
0
1
0
37
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
38
CopyNumber_Gistic2
0
0
0
1
0
39
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
40
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
41
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
42
Correlate_Clinical_vs_Methylation
1
0
0
0
0
43
Correlate_Clinical_vs_miR
0
1
0
0
0
44
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
45
Correlate_Clinical_vs_mRNA
0
0
0
1
0
46
Correlate_Clinical_vs_Mutation
1
0
0
0
0
47
Correlate_CopyNumber_vs_miR
0
0
0
1
0
48
Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
49
Correlate_Methylation_vs_mRNA
1
0
0
0
0
50
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
51
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
52
Methylation_Clustering_CNMF
1
0
0
0
0
53
Methylation_Preprocess
1
0
0
0
0
54
miR_FindDirectTargets
0
0
0
1
0
55
miR_Mature_Clustering_CNMF
0
0
0
1
0
56
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
57
miR_Mature_Preprocess
0
0
0
1
0
58
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
59
mRNA_lincRNA_CNMF
0
0
0
1
0
60
mRNA_Preprocess
0
0
0
1
0
61
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
62
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
63
Mutation_APOBEC
0
1
0
0
0
64
Mutation_CoOccurrence
0
0
0
1
0
65
Mutation_Signature
0
1
0
0
0
66
Pathway_GSEA_mRNA
0
0
0
1
0
67
Aggregate_AnalysisFeatures
0
1
0
0
0
68
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
69
CopyNumber_Clustering_CNMF
1
0
0
0
0
70
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
71
CopyNumber_Gistic2
0
0
0
0
1
72
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
73
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
74
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
75
Correlate_Clinical_vs_Methylation
1
0
0
0
0
76
Correlate_Clinical_vs_miR
0
1
0
0
0
77
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
78
Correlate_Clinical_vs_mRNA
0
0
0
1
0
79
Correlate_Clinical_vs_Mutation
1
0
0
0
0
80
Correlate_CopyNumber_vs_miR
1
0
0
0
0
81
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
82
Correlate_Methylation_vs_mRNA
1
0
0
0
0
83
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
84
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
85
Methylation_Clustering_CNMF
1
0
0
0
0
86
Methylation_Preprocess
1
0
0
0
0
87
miR_FindDirectTargets
0
0
0
1
0
88
miR_Mature_Clustering_CNMF
0
0
0
1
0
89
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
90
miR_Mature_Preprocess
0
0
0
1
0
91
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
92
mRNA_lincRNA_CNMF
0
0
0
0
1
93
mRNA_Preprocess
0
0
0
1
0
94
mRNA_protein_coding_Clustering_CNMF
0
0
0
0
1
95
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
0
1
96
Mutation_APOBEC
1
0
0
0
0
97
Mutation_CoOccurrence
1
0
0
0
0
98
Mutation_Signature
1
0
0
0
0
99
Pathway_GSEA_mRNA
0
0
0
0
1
100
Aggregate_AnalysisFeatures
0
1
0
0
0
101
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
102
CopyNumber_Clustering_CNMF
1
0
0
0
0
103
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
104
CopyNumber_Gistic2
0
0
0
0
1
105
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
106
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
107
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
108
Correlate_Clinical_vs_Methylation
1
0
0
0
0
109
Correlate_Clinical_vs_miR
1
0
0
0
0
110
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
111
Correlate_Clinical_vs_mRNA
1
0
0
0
0
112
Correlate_Clinical_vs_Mutation
1
0
0
0
0
113
Correlate_CopyNumber_vs_miR
1
0
0
0
0
114
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
115
Correlate_Methylation_vs_mRNA
1
0
0
0
0
116
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
117
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
118
Methylation_Clustering_CNMF
1
0
0
0
0
119
Methylation_Preprocess
1
0
0
0
0
120
miR_FindDirectTargets
1
0
0
0
0
121
miR_Mature_Clustering_CNMF
1
0
0
0
0
122
miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
123
miR_Mature_Preprocess
1
0
0
0
0
124
mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
125
mRNA_lincRNA_CNMF
1
0
0
0
0
126
mRNA_Preprocess
1
0
0
0
0
127
mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
128
mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
129
Mutation_APOBEC
1
0
0
0
0
130
Mutation_CoOccurrence
1
0
0
0
0
131
Mutation_Signature
1
0
0
0
0
132
Pathway_GSEA_mRNA
1
0
0
0
0
133
Aggregate_AnalysisFeatures
0
1
0
0
0
134
Aggregate_Gene_Status
1
0
0
0
0
135
Aggregate_Molecular_Subtype_Clusters
0
1
0
0
0
136
Append_CustomClinical
0
1
0
0
0
137
CoMut2.0
1
0
0
0
0
138
CoMut2CV
1
0
0
0
0
139
CoMutCV
1
0
0
0
0
140
CopyNumber_Clustering_CNMF
1
0
0
0
0
141
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
142
CopyNumber_Gistic2
0
1
0
0
0
143
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
144
CopyNumberLowPass_Gistic2
0
1
0
0
0
145
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
146
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
147
Correlate_Clinical_vs_Methylation
1
0
0
0
0
148
Correlate_Clinical_vs_miR
1
0
0
0
0
149
Correlate_Clinical_vs_miRseq
1
0
0
0
0
150
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
151
Correlate_Clinical_vs_mRNA
1
0
0
0
0
152
Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
153
Correlate_Clinical_vs_Mutation
1
0
0
0
0
154
Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
155
Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
156
Correlate_Clinical_vs_MutationRate
1
0
0
0
0
157
Correlate_Clinical_vs_RPPA
1
0
0
0
0
158
Correlate_CopyNumber_vs_miR
1
0
0
0
0
159
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
160
Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
161
Correlate_Methylation_vs_mRNA
0
1
0
0
0
162
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
163
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
164
Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
165
Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
166
GenerateStickFigures2.0
1
0
0
0
0
167
GenerateStickFigures2CV
1
0
0
0
0
168
GenerateStickFiguresCV
1
0
0
0
0
169
iClusterPlus
1
0
0
0
0
170
LegoPlotter2.0
1
0
0
0
0
171
LegoPlotter2CV
1
0
0
0
0
172
LegoPlotterCV
1
0
0
0
0
173
Methylation_Clustering_CNMF
0
1
0
0
0
174
miR_Clustering_CNMF
1
0
0
0
0
175
miR_Clustering_Consensus_Plus
1
0
0
0
0
176
miR_FindDirectTargets
1
0
0
0
0
177
miRseq_Clustering_CNMF
0
1
0
0
0
178
miRseq_Clustering_Consensus_Plus
0
1
0
0
0
179
miRseq_FindDirectTargets
0
1
0
0
0
180
miRseq_Mature_Clustering_CNMF
0
1
0
0
0
181
miRseq_Mature_Clustering_Consensus_Plus
0
1
0
0
0
182
mRNA_Clustering_CNMF
1
0
0
0
0
183
mRNA_Clustering_Consensus_Plus
1
0
0
0
0
184
mRNAseq_Clustering_CNMF
0
1
0
0
0
185
mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
186
Mutation_APOBEC
1
0
0
0
0
187
Mutation_Assessor
1
0
0
0
0
188
Mutation_CHASM
1
0
0
0
0
189
Mutation_CoOccurrence
1
0
0
0
0
190
Mutation_CoOccurrence_Custom
1
0
0
0
0
191
MutSigNozzleReport2.0
1
0
0
0
0
192
MutSigNozzleReport2CV
1
0
0
0
0
193
MutSigNozzleReportCV
1
0
0
0
0
194
MutSigPreprocess2.0
1
0
0
0
0
195
MutSigRun2.0
1
0
0
0
0
196
MutSigRun2CV
1
0
0
0
0
197
MutSigRunCV
1
0
0
0
0
198
Paradigm_mRNA
1
0
0
0
0
199
Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
200
Paradigm_Prepare_mRNA
1
0
0
0
0
201
Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
202
Paradigm_Prepare_RNASeq
1
0
0
0
0
203
Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
204
Paradigm_Preprocess_mRNA
1
0
0
0
0
205
ParadigmPreprocess_mRNA
1
0
0
0
0
206
Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
207
ParadigmPreprocess_RNASeq
0
1
0
0
0
208
Paradigm_Preprocess_RNASeq
1
0
0
0
0
209
Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
210
Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
211
Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
212
Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
213
Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
214
Paradigm_RNASeq
1
0
0
0
0
215
Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
216
Pathway_FindEnrichedGenes
1
0
0
0
0
217
Pathway_GSEA_mRNAseq
1
0
0
0
0
218
Pathway_Hotnet
1
0
0
0
0
219
Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
220
Pathway_Paradigm_mRNA
1
0
0
0
0
221
Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
222
Pathway_Paradigm_RNASeq
1
0
0
0
0
223
Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
224
ProcessCoverageForMutSig2.0
1
0
0
0
0
225
RPPA_Clustering_CNMF
0
1
0
0
0
226
RPPA_Clustering_Consensus_Plus
0
1
0
0
0
227
TP-Aggregate_AnalysisFeatures
0
1
0
0
0
228
TP-Aggregate_Gene_Status
1
0
0
0
0
229
TP-Aggregate_Molecular_Subtype_Clusters
0
1
0
0
0
230
TP-Append_CustomClinical
0
1
0
0
0
231
TP-CoMut2.0
1
0
0
0
0
232
TP-CoMut2CV
1
0
0
0
0
233
TP-CoMutCV
1
0
0
0
0
234
TP-CopyNumber_Clustering_CNMF
1
0
0
0
0
235
TP-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
236
TP-CopyNumber_Gistic2
0
1
0
0
0
237
TP-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
238
TP-CopyNumberLowPass_Gistic2
0
1
0
0
0
239
TP-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
240
TP-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
241
TP-Correlate_Clinical_vs_Methylation
1
0
0
0
0
242
TP-Correlate_Clinical_vs_miR
1
0
0
0
0
243
TP-Correlate_Clinical_vs_miRseq
1
0
0
0
0
244
TP-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
245
TP-Correlate_Clinical_vs_mRNA
1
0
0
0
0
246
TP-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
247
TP-Correlate_Clinical_vs_Mutation
1
0
0
0
0
248
TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
249
TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
250
TP-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
251
TP-Correlate_Clinical_vs_RPPA
1
0
0
0
0
252
TP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
253
TP-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
254
TP-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
255
TP-Correlate_Methylation_vs_mRNA
0
1
0
0
0
256
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
257
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
258
TP-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
259
TP-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
260
TP-GenerateStickFigures2.0
1
0
0
0
0
261
TP-GenerateStickFigures2CV
1
0
0
0
0
262
TP-GenerateStickFiguresCV
1
0
0
0
0
263
TP-iClusterPlus
1
0
0
0
0
264
TP-LegoPlotter2.0
1
0
0
0
0
265
TP-LegoPlotter2CV
1
0
0
0
0
266
TP-LegoPlotterCV
1
0
0
0
0
267
TP-Methylation_Clustering_CNMF
0
1
0
0
0
268
TP-miR_Clustering_CNMF
1
0
0
0
0
269
TP-miR_Clustering_Consensus_Plus
1
0
0
0
0
270
TP-miR_FindDirectTargets
1
0
0
0
0
271
TP-miRseq_Clustering_CNMF
0
1
0
0
0
272
TP-miRseq_Clustering_Consensus_Plus
0
1
0
0
0
273
TP-miRseq_FindDirectTargets
0
1
0
0
0
274
TP-miRseq_Mature_Clustering_CNMF
0
1
0
0
0
275
TP-miRseq_Mature_Clustering_Consensus_Plus
0
1
0
0
0
276
TP-mRNA_Clustering_CNMF
1
0
0
0
0
277
TP-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
278
TP-mRNAseq_Clustering_CNMF
0
1
0
0
0
279
TP-mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
280
TP-Mutation_APOBEC
1
0
0
0
0
281
TP-Mutation_Assessor
1
0
0
0
0
282
TP-Mutation_CHASM
1
0
0
0
0
283
TP-Mutation_CoOccurrence
1
0
0
0
0
284
TP-Mutation_CoOccurrence_Custom
1
0
0
0
0
285
TP-MutSigNozzleReport2.0
1
0
0
0
0
286
TP-MutSigNozzleReport2CV
1
0
0
0
0
287
TP-MutSigNozzleReportCV
1
0
0
0
0
288
TP-MutSigPreprocess2.0
0
1
0
0
0
289
TP-MutSigRun2.0
1
0
0
0
0
290
TP-MutSigRun2CV
0
1
0
0
0
291
TP-MutSigRunCV
0
1
0
0
0
292
TP-Paradigm_mRNA
1
0
0
0
0
293
TP-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
294
TP-Paradigm_Prepare_mRNA
1
0
0
0
0
295
TP-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
296
TP-Paradigm_Prepare_RNASeq
1
0
0
0
0
297
TP-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
298
TP-Paradigm_Preprocess_mRNA
1
0
0
0
0
299
TP-ParadigmPreprocess_mRNA
1
0
0
0
0
300
TP-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
301
TP-ParadigmPreprocess_RNASeq
0
1
0
0
0
302
TP-Paradigm_Preprocess_RNASeq
1
0
0
0
0
303
TP-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
304
TP-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
305
TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
306
TP-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
307
TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
308
TP-Paradigm_RNASeq
1
0
0
0
0
309
TP-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
310
TP-Pathway_FindEnrichedGenes
1
0
0
0
0
311
TP-Pathway_GSEA_mRNAseq
1
0
0
0
0
312
TP-Pathway_Hotnet
1
0
0
0
0
313
TP-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
314
TP-Pathway_Paradigm_mRNA
1
0
0
0
0
315
TP-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
316
TP-Pathway_Paradigm_RNASeq
1
0
0
0
0
317
TP-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
318
TP-ProcessCoverageForMutSig2.0
1
0
0
0
0
319
TP-RPPA_Clustering_CNMF
0
1
0
0
0
320
TP-RPPA_Clustering_Consensus_Plus
0
1
0
0
0
321
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
322
NT-Aggregate_Gene_Status
1
0
0
0
0
323
NT-Aggregate_Molecular_Subtype_Clusters
0
1
0
0
0
324
NT-Append_CustomClinical
0
1
0
0
0
325
NT-CoMut2.0
1
0
0
0
0
326
NT-CoMut2CV
1
0
0
0
0
327
NT-CoMutCV
1
0
0
0
0
328
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
329
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
330
NT-CopyNumber_Gistic2
0
1
0
0
0
331
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
332
NT-CopyNumberLowPass_Gistic2
0
1
0
0
0
333
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
334
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
335
NT-Correlate_Clinical_vs_Methylation
1
0
0
0
0
336
NT-Correlate_Clinical_vs_miR
1
0
0
0
0
337
NT-Correlate_Clinical_vs_miRseq
1
0
0
0
0
338
NT-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
339
NT-Correlate_Clinical_vs_mRNA
1
0
0
0
0
340
NT-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
341
NT-Correlate_Clinical_vs_Mutation
1
0
0
0
0
342
NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
343
NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
344
NT-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
345
NT-Correlate_Clinical_vs_RPPA
1
0
0
0
0
346
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
347
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
348
NT-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
349
NT-Correlate_Methylation_vs_mRNA
1
0
0
0
0
350
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
351
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
352
NT-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
353
NT-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
354
NT-GenerateStickFigures2.0
1
0
0
0
0
355
NT-GenerateStickFigures2CV
1
0
0
0
0
356
NT-GenerateStickFiguresCV
1
0
0
0
0
357
NT-iClusterPlus
1
0
0
0
0
358
NT-LegoPlotter2.0
1
0
0
0
0
359
NT-LegoPlotter2CV
1
0
0
0
0
360
NT-LegoPlotterCV
1
0
0
0
0
361
NT-Methylation_Clustering_CNMF
0
1
0
0
0
362
NT-miR_Clustering_CNMF
1
0
0
0
0
363
NT-miR_Clustering_Consensus_Plus
1
0
0
0
0
364
NT-miR_FindDirectTargets
1
0
0
0
0
365
NT-miRseq_Clustering_CNMF
0
1
0
0
0
366
NT-miRseq_Clustering_Consensus_Plus
0
1
0
0
0
367
NT-miRseq_FindDirectTargets
0
1
0
0
0
368
NT-miRseq_Mature_Clustering_CNMF
0
1
0
0
0
369
NT-miRseq_Mature_Clustering_Consensus_Plus
0
1
0
0
0
370
NT-mRNA_Clustering_CNMF
1
0
0
0
0
371
NT-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
372
NT-mRNAseq_Clustering_CNMF
0
1
0
0
0
373
NT-mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
374
NT-Mutation_APOBEC
1
0
0
0
0
375
NT-Mutation_Assessor
1
0
0
0
0
376
NT-Mutation_CHASM
1
0
0
0
0
377
NT-Mutation_CoOccurrence
1
0
0
0
0
378
NT-Mutation_CoOccurrence_Custom
1
0
0
0
0
379
NT-MutSigNozzleReport2.0
1
0
0
0
0
380
NT-MutSigNozzleReport2CV
1
0
0
0
0
381
NT-MutSigNozzleReportCV
1
0
0
0
0
382
NT-MutSigPreprocess2.0
1
0
0
0
0
383
NT-MutSigRun2.0
1
0
0
0
0
384
NT-MutSigRun2CV
1
0
0
0
0
385
NT-MutSigRunCV
1
0
0
0
0
386
NT-Paradigm_mRNA
1
0
0
0
0
387
NT-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
388
NT-Paradigm_Prepare_mRNA
1
0
0
0
0
389
NT-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
390
NT-Paradigm_Prepare_RNASeq
1
0
0
0
0
391
NT-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
392
NT-Paradigm_Preprocess_mRNA
1
0
0
0
0
393
NT-ParadigmPreprocess_mRNA
1
0
0
0
0
394
NT-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
395
NT-ParadigmPreprocess_RNASeq
0
1
0
0
0
396
NT-Paradigm_Preprocess_RNASeq
1
0
0
0
0
397
NT-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
398
NT-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
399
NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
400
NT-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
401
NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
402
NT-Paradigm_RNASeq
1
0
0
0
0
403
NT-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
404
NT-Pathway_FindEnrichedGenes
1
0
0
0
0
405
NT-Pathway_GSEA_mRNAseq
1
0
0
0
0
406
NT-Pathway_Hotnet
1
0
0
0
0
407
NT-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
408
NT-Pathway_Paradigm_mRNA
1
0
0
0
0
409
NT-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
410
NT-Pathway_Paradigm_RNASeq
1
0
0
0
0
411
NT-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
412
NT-ProcessCoverageForMutSig2.0
1
0
0
0
0
413
NT-RPPA_Clustering_CNMF
1
0
0
0
0
414
NT-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
415
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
416
NB-Aggregate_Gene_Status
1
0
0
0
0
417
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
418
NB-Append_CustomClinical
0
1
0
0
0
419
NB-CoMut2.0
1
0
0
0
0
420
NB-CoMut2CV
1
0
0
0
0
421
NB-CoMutCV
1
0
0
0
0
422
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
423
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
424
NB-CopyNumber_Gistic2
0
1
0
0
0
425
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
426
NB-CopyNumberLowPass_Gistic2
0
1
0
0
0
427
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
428
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
429
NB-Correlate_Clinical_vs_Methylation
1
0
0
0
0
430
NB-Correlate_Clinical_vs_miR
1
0
0
0
0
431
NB-Correlate_Clinical_vs_miRseq
1
0
0
0
0
432
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
433
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
434
NB-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
435
NB-Correlate_Clinical_vs_Mutation
1
0
0
0
0
436
NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
437
NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
438
NB-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
439
NB-Correlate_Clinical_vs_RPPA
1
0
0
0
0
440
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
441
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
442
NB-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
443
NB-Correlate_Methylation_vs_mRNA
1
0
0
0
0
444
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
445
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
446
NB-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
447
NB-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
448
NB-GenerateStickFigures2.0
1
0
0
0
0
449
NB-GenerateStickFigures2CV
1
0
0
0
0
450
NB-GenerateStickFiguresCV
1
0
0
0
0
451
NB-iClusterPlus
1
0
0
0
0
452
NB-LegoPlotter2.0
1
0
0
0
0
453
NB-LegoPlotter2CV
1
0
0
0
0
454
NB-LegoPlotterCV
1
0
0
0
0
455
NB-Methylation_Clustering_CNMF
1
0
0
0
0
456
NB-miR_Clustering_CNMF
1
0
0
0
0
457
NB-miR_Clustering_Consensus_Plus
1
0
0
0
0
458
NB-miR_FindDirectTargets
1
0
0
0
0
459
NB-miRseq_Clustering_CNMF
1
0
0
0
0
460
NB-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
461
NB-miRseq_FindDirectTargets
1
0
0
0
0
462
NB-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
463
NB-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
464
NB-mRNA_Clustering_CNMF
1
0
0
0
0
465
NB-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
466
NB-mRNAseq_Clustering_CNMF
1
0
0
0
0
467
NB-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
468
NB-Mutation_APOBEC
1
0
0
0
0
469
NB-Mutation_Assessor
1
0
0
0
0
470
NB-Mutation_CHASM
1
0
0
0
0
471
NB-Mutation_CoOccurrence
1
0
0
0
0
472
NB-Mutation_CoOccurrence_Custom
1
0
0
0
0
473
NB-MutSigNozzleReport2.0
1
0
0
0
0
474
NB-MutSigNozzleReport2CV
1
0
0
0
0
475
NB-MutSigNozzleReportCV
1
0
0
0
0
476
NB-MutSigPreprocess2.0
1
0
0
0
0
477
NB-MutSigRun2.0
1
0
0
0
0
478
NB-MutSigRun2CV
1
0
0
0
0
479
NB-MutSigRunCV
1
0
0
0
0
480
NB-Paradigm_mRNA
1
0
0
0
0
481
NB-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
482
NB-Paradigm_Prepare_mRNA
1
0
0
0
0
483
NB-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
484
NB-Paradigm_Prepare_RNASeq
1
0
0
0
0
485
NB-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
486
NB-Paradigm_Preprocess_mRNA
1
0
0
0
0
487
NB-ParadigmPreprocess_mRNA
1
0
0
0
0
488
NB-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
489
NB-Paradigm_Preprocess_RNASeq
1
0
0
0
0
490
NB-ParadigmPreprocess_RNASeq
1
0
0
0
0
491
NB-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
492
NB-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
493
NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
494
NB-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
495
NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
496
NB-Paradigm_RNASeq
1
0
0
0
0
497
NB-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
498
NB-Pathway_FindEnrichedGenes
1
0
0
0
0
499
NB-Pathway_GSEA_mRNAseq
1
0
0
0
0
500
NB-Pathway_Hotnet
1
0
0
0
0
501
NB-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
502
NB-Pathway_Paradigm_mRNA
1
0
0
0
0
503
NB-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
504
NB-Pathway_Paradigm_RNASeq
1
0
0
0
0
505
NB-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
506
NB-ProcessCoverageForMutSig2.0
1
0
0
0
0
507
NB-RPPA_Clustering_CNMF
1
0
0
0
0
508
NB-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
Total
379
61
0
61
7
This table generated on Thu Jan 26 11:04:13 2017