| Pipeline | NotRunnable | Runnable | InProcess | Successful | Unsuccessful |
|---|
| 1 | Aggregate_AnalysisFeatures | 0 | 0 | 0 | 0 | 1 |
| 2 | Aggregate_Molecular_Subtype_Clusters | 0 | 0 | 0 | 1 | 0 |
| 3 | CopyNumber_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 4 | CopyNumber_Clustering_CNMF_thresholded | 0 | 0 | 0 | 1 | 0 |
| 5 | CopyNumber_Gistic2 | 0 | 0 | 0 | 1 | 0 |
| 6 | CopyNumber_Gistic2_Postprocess_Focal | 0 | 0 | 0 | 1 | 0 |
| 7 | Correlate_Clinical_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 8 | Correlate_Clinical_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 9 | Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 10 | Correlate_Clinical_vs_miR | 0 | 0 | 0 | 1 | 0 |
| 11 | Correlate_Clinical_vs_Molecular_Subtypes | 0 | 0 | 0 | 1 | 0 |
| 12 | Correlate_Clinical_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 13 | Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 14 | Correlate_CopyNumber_vs_miR | 0 | 0 | 0 | 1 | 0 |
| 15 | Correlate_CopyNumber_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 16 | Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 17 | Correlate_molecularSubtype_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 18 | Correlate_molecularSubtype_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 19 | Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 20 | Methylation_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 21 | miR_FindDirectTargets | 0 | 0 | 0 | 1 | 0 |
| 22 | miR_Mature_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 23 | miR_Mature_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 24 | miR_Mature_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 25 | mRNA_lincRNA_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 26 | mRNA_lincRNA_CNMF | 0 | 0 | 0 | 1 | 0 |
| 27 | mRNA_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 28 | mRNA_protein_coding_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 29 | mRNA_protein_coding_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 30 | Mutation_APOBEC | 0 | 1 | 0 | 0 | 0 |
| 31 | Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 32 | Mutation_Signature | 0 | 1 | 0 | 0 | 0 |
| 33 | Pathway_GSEA_mRNA | 0 | 0 | 0 | 1 | 0 |
| 34 | TP-Aggregate_AnalysisFeatures | 0 | 0 | 0 | 0 | 1 |
| 35 | TP-Aggregate_Molecular_Subtype_Clusters | 0 | 0 | 0 | 1 | 0 |
| 36 | TP-CopyNumber_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 37 | TP-CopyNumber_Clustering_CNMF_thresholded | 0 | 0 | 0 | 1 | 0 |
| 38 | TP-CopyNumber_Gistic2 | 0 | 0 | 0 | 1 | 0 |
| 39 | TP-CopyNumber_Gistic2_Postprocess_Focal | 0 | 0 | 0 | 1 | 0 |
| 40 | TP-Correlate_Clinical_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 41 | TP-Correlate_Clinical_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 42 | TP-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 43 | TP-Correlate_Clinical_vs_miR | 0 | 0 | 0 | 1 | 0 |
| 44 | TP-Correlate_Clinical_vs_Molecular_Subtypes | 0 | 0 | 0 | 1 | 0 |
| 45 | TP-Correlate_Clinical_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 46 | TP-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 47 | TP-Correlate_CopyNumber_vs_miR | 0 | 0 | 0 | 1 | 0 |
| 48 | TP-Correlate_CopyNumber_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 49 | TP-Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 50 | TP-Correlate_molecularSubtype_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 51 | TP-Correlate_molecularSubtype_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 52 | TP-Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 53 | TP-Methylation_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 54 | TP-miR_FindDirectTargets | 0 | 0 | 0 | 1 | 0 |
| 55 | TP-miR_Mature_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 56 | TP-miR_Mature_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 57 | TP-miR_Mature_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 58 | TP-mRNA_lincRNA_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 59 | TP-mRNA_lincRNA_CNMF | 0 | 0 | 0 | 1 | 0 |
| 60 | TP-mRNA_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 61 | TP-mRNA_protein_coding_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 62 | TP-mRNA_protein_coding_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 63 | TP-Mutation_APOBEC | 0 | 0 | 0 | 1 | 0 |
| 64 | TP-Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 65 | TP-Mutation_Signature | 0 | 0 | 0 | 0 | 1 |
| 66 | TP-Pathway_GSEA_mRNA | 0 | 0 | 0 | 0 | 1 |
| 67 | TM-Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
| 68 | TM-Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
| 69 | TM-CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 70 | TM-CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
| 71 | TM-CopyNumber_Gistic2 | 0 | 0 | 0 | 0 | 1 |
| 72 | TM-CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
| 73 | TM-Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 74 | TM-Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 75 | TM-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 76 | TM-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 77 | TM-Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
| 78 | TM-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 79 | TM-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 80 | TM-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 81 | TM-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 82 | TM-Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 83 | TM-Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 84 | TM-Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 85 | TM-Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 86 | TM-Methylation_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 87 | TM-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 88 | TM-miR_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 89 | TM-miR_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 90 | TM-miR_Mature_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 91 | TM-mRNA_lincRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 92 | TM-mRNA_lincRNA_CNMF | 1 | 0 | 0 | 0 | 0 |
| 93 | TM-mRNA_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 94 | TM-mRNA_protein_coding_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 95 | TM-mRNA_protein_coding_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 96 | TM-Mutation_APOBEC | 0 | 1 | 0 | 0 | 0 |
| 97 | TM-Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 98 | TM-Mutation_Signature | 0 | 1 | 0 | 0 | 0 |
| 99 | TM-Pathway_GSEA_mRNA | 1 | 0 | 0 | 0 | 0 |
| 100 | NT-Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
| 101 | NT-Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
| 102 | NT-CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 103 | NT-CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
| 104 | NT-CopyNumber_Gistic2 | 0 | 0 | 0 | 0 | 1 |
| 105 | NT-CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
| 106 | NT-Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 107 | NT-Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 108 | NT-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 109 | NT-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 110 | NT-Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
| 111 | NT-Correlate_Clinical_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 112 | NT-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 113 | NT-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 114 | NT-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 115 | NT-Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 116 | NT-Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 117 | NT-Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 118 | NT-Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 119 | NT-Methylation_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 120 | NT-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 121 | NT-miR_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 122 | NT-miR_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 123 | NT-miR_Mature_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 124 | NT-mRNA_lincRNA_Clustering_Consensus_Plus | 0 | 0 | 0 | 0 | 1 |
| 125 | NT-mRNA_lincRNA_CNMF | 0 | 0 | 0 | 0 | 1 |
| 126 | NT-mRNA_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 127 | NT-mRNA_protein_coding_Clustering_CNMF | 0 | 0 | 0 | 0 | 1 |
| 128 | NT-mRNA_protein_coding_Clustering_Consensus_Plus | 0 | 0 | 0 | 0 | 1 |
| 129 | NT-Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 130 | NT-Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 131 | NT-Mutation_Signature | 1 | 0 | 0 | 0 | 0 |
| 132 | NT-Pathway_GSEA_mRNA | 1 | 0 | 0 | 0 | 0 |
| 133 | NB-Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
| 134 | NB-Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
| 135 | NB-CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 136 | NB-CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
| 137 | NB-CopyNumber_Gistic2 | 0 | 0 | 0 | 0 | 1 |
| 138 | NB-CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
| 139 | NB-Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 140 | NB-Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 141 | NB-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 142 | NB-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 143 | NB-Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
| 144 | NB-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 145 | NB-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 146 | NB-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 147 | NB-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 148 | NB-Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 149 | NB-Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 150 | NB-Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 151 | NB-Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 152 | NB-Methylation_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 153 | NB-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 154 | NB-miR_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 155 | NB-miR_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 156 | NB-miR_Mature_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 157 | NB-mRNA_lincRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 158 | NB-mRNA_lincRNA_CNMF | 1 | 0 | 0 | 0 | 0 |
| 159 | NB-mRNA_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 160 | NB-mRNA_protein_coding_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 161 | NB-mRNA_protein_coding_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 162 | NB-Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 163 | NB-Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 164 | NB-Mutation_Signature | 1 | 0 | 0 | 0 | 0 |
| 165 | NB-Pathway_GSEA_mRNA | 1 | 0 | 0 | 0 | 0 |
| 166 | FFPE-Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
| 167 | FFPE-Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
| 168 | FFPE-CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 169 | FFPE-CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
| 170 | FFPE-CopyNumber_Gistic2 | 0 | 1 | 0 | 0 | 0 |
| 171 | FFPE-CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
| 172 | FFPE-Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 173 | FFPE-Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 174 | FFPE-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 175 | FFPE-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 176 | FFPE-Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
| 177 | FFPE-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 178 | FFPE-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 179 | FFPE-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 180 | FFPE-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 181 | FFPE-Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 182 | FFPE-Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 183 | FFPE-Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 184 | FFPE-Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 185 | FFPE-Methylation_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 186 | FFPE-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 187 | FFPE-miR_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 188 | FFPE-miR_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 189 | FFPE-miR_Mature_Preprocess | 0 | 1 | 0 | 0 | 0 |
| 190 | FFPE-mRNA_lincRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 191 | FFPE-mRNA_lincRNA_CNMF | 1 | 0 | 0 | 0 | 0 |
| 192 | FFPE-mRNA_Preprocess | 0 | 1 | 0 | 0 | 0 |
| 193 | FFPE-mRNA_protein_coding_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 194 | FFPE-mRNA_protein_coding_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 195 | FFPE-Mutation_APOBEC | 0 | 1 | 0 | 0 | 0 |
| 196 | FFPE-Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 197 | FFPE-Mutation_Signature | 0 | 1 | 0 | 0 | 0 |
| 198 | FFPE-Pathway_GSEA_mRNA | 1 | 0 | 0 | 0 | 0 |
| Total | 122 | 13 | 0 | 52 | 11 |