Broad GDAC Analyses Status
dev Run for Tumor Type: TCGA-BLCA
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Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
0
0
0
1
2
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
3
CopyNumber_Clustering_CNMF
0
0
0
1
0
4
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
5
CopyNumber_Gistic2
0
0
0
1
0
6
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
7
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
8
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
9
Correlate_Clinical_vs_Methylation
1
0
0
0
0
10
Correlate_Clinical_vs_miR
0
0
0
1
0
11
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
12
Correlate_Clinical_vs_mRNA
0
0
0
1
0
13
Correlate_Clinical_vs_Mutation
1
0
0
0
0
14
Correlate_CopyNumber_vs_miR
0
0
0
1
0
15
Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
16
Correlate_Methylation_vs_mRNA
1
0
0
0
0
17
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
18
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
19
Methylation_Clustering_CNMF
1
0
0
0
0
20
Methylation_Preprocess
1
0
0
0
0
21
miR_FindDirectTargets
0
0
0
1
0
22
miR_Mature_Clustering_CNMF
0
0
0
1
0
23
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
24
miR_Mature_Preprocess
0
0
0
1
0
25
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
26
mRNA_lincRNA_CNMF
0
0
0
1
0
27
mRNA_Preprocess
0
0
0
1
0
28
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
29
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
30
Mutation_APOBEC
0
1
0
0
0
31
Mutation_CoOccurrence
1
0
0
0
0
32
Mutation_Signature
0
1
0
0
0
33
Pathway_GSEA_mRNA
0
0
0
1
0
34
TP-Aggregate_AnalysisFeatures
0
0
0
0
1
35
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
36
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
37
TP-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
38
TP-CopyNumber_Gistic2
0
0
0
1
0
39
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
40
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
41
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
42
TP-Correlate_Clinical_vs_Methylation
1
0
0
0
0
43
TP-Correlate_Clinical_vs_miR
0
0
0
1
0
44
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
45
TP-Correlate_Clinical_vs_mRNA
0
0
0
1
0
46
TP-Correlate_Clinical_vs_Mutation
1
0
0
0
0
47
TP-Correlate_CopyNumber_vs_miR
0
0
0
1
0
48
TP-Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
49
TP-Correlate_Methylation_vs_mRNA
1
0
0
0
0
50
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
51
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
52
TP-Methylation_Clustering_CNMF
1
0
0
0
0
53
TP-Methylation_Preprocess
1
0
0
0
0
54
TP-miR_FindDirectTargets
0
0
0
1
0
55
TP-miR_Mature_Clustering_CNMF
0
0
0
1
0
56
TP-miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
57
TP-miR_Mature_Preprocess
0
0
0
1
0
58
TP-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
59
TP-mRNA_lincRNA_CNMF
0
0
0
1
0
60
TP-mRNA_Preprocess
0
0
0
1
0
61
TP-mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
62
TP-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
63
TP-Mutation_APOBEC
0
0
0
1
0
64
TP-Mutation_CoOccurrence
1
0
0
0
0
65
TP-Mutation_Signature
0
0
0
0
1
66
TP-Pathway_GSEA_mRNA
0
0
0
0
1
67
TM-Aggregate_AnalysisFeatures
0
1
0
0
0
68
TM-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
69
TM-CopyNumber_Clustering_CNMF
1
0
0
0
0
70
TM-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
71
TM-CopyNumber_Gistic2
0
0
0
0
1
72
TM-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
73
TM-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
74
TM-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
75
TM-Correlate_Clinical_vs_Methylation
1
0
0
0
0
76
TM-Correlate_Clinical_vs_miR
1
0
0
0
0
77
TM-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
78
TM-Correlate_Clinical_vs_mRNA
1
0
0
0
0
79
TM-Correlate_Clinical_vs_Mutation
1
0
0
0
0
80
TM-Correlate_CopyNumber_vs_miR
1
0
0
0
0
81
TM-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
82
TM-Correlate_Methylation_vs_mRNA
1
0
0
0
0
83
TM-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
84
TM-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
85
TM-Methylation_Clustering_CNMF
1
0
0
0
0
86
TM-Methylation_Preprocess
1
0
0
0
0
87
TM-miR_FindDirectTargets
1
0
0
0
0
88
TM-miR_Mature_Clustering_CNMF
1
0
0
0
0
89
TM-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
90
TM-miR_Mature_Preprocess
0
0
0
1
0
91
TM-mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
92
TM-mRNA_lincRNA_CNMF
1
0
0
0
0
93
TM-mRNA_Preprocess
1
0
0
0
0
94
TM-mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
95
TM-mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
96
TM-Mutation_APOBEC
0
1
0
0
0
97
TM-Mutation_CoOccurrence
1
0
0
0
0
98
TM-Mutation_Signature
0
1
0
0
0
99
TM-Pathway_GSEA_mRNA
1
0
0
0
0
100
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
101
NT-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
102
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
103
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
104
NT-CopyNumber_Gistic2
0
0
0
0
1
105
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
106
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
107
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
108
NT-Correlate_Clinical_vs_Methylation
1
0
0
0
0
109
NT-Correlate_Clinical_vs_miR
1
0
0
0
0
110
NT-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
111
NT-Correlate_Clinical_vs_mRNA
0
0
0
1
0
112
NT-Correlate_Clinical_vs_Mutation
1
0
0
0
0
113
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
114
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
115
NT-Correlate_Methylation_vs_mRNA
1
0
0
0
0
116
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
117
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
118
NT-Methylation_Clustering_CNMF
1
0
0
0
0
119
NT-Methylation_Preprocess
1
0
0
0
0
120
NT-miR_FindDirectTargets
1
0
0
0
0
121
NT-miR_Mature_Clustering_CNMF
1
0
0
0
0
122
NT-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
123
NT-miR_Mature_Preprocess
0
0
0
1
0
124
NT-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
125
NT-mRNA_lincRNA_CNMF
0
0
0
0
1
126
NT-mRNA_Preprocess
0
0
0
1
0
127
NT-mRNA_protein_coding_Clustering_CNMF
0
0
0
0
1
128
NT-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
0
1
129
NT-Mutation_APOBEC
1
0
0
0
0
130
NT-Mutation_CoOccurrence
1
0
0
0
0
131
NT-Mutation_Signature
1
0
0
0
0
132
NT-Pathway_GSEA_mRNA
1
0
0
0
0
133
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
134
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
135
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
136
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
137
NB-CopyNumber_Gistic2
0
0
0
0
1
138
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
139
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
140
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
141
NB-Correlate_Clinical_vs_Methylation
1
0
0
0
0
142
NB-Correlate_Clinical_vs_miR
1
0
0
0
0
143
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
144
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
145
NB-Correlate_Clinical_vs_Mutation
1
0
0
0
0
146
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
147
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
148
NB-Correlate_Methylation_vs_mRNA
1
0
0
0
0
149
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
150
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
151
NB-Methylation_Clustering_CNMF
1
0
0
0
0
152
NB-Methylation_Preprocess
1
0
0
0
0
153
NB-miR_FindDirectTargets
1
0
0
0
0
154
NB-miR_Mature_Clustering_CNMF
1
0
0
0
0
155
NB-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
156
NB-miR_Mature_Preprocess
1
0
0
0
0
157
NB-mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
158
NB-mRNA_lincRNA_CNMF
1
0
0
0
0
159
NB-mRNA_Preprocess
1
0
0
0
0
160
NB-mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
161
NB-mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
162
NB-Mutation_APOBEC
1
0
0
0
0
163
NB-Mutation_CoOccurrence
1
0
0
0
0
164
NB-Mutation_Signature
1
0
0
0
0
165
NB-Pathway_GSEA_mRNA
1
0
0
0
0
166
FFPE-Aggregate_AnalysisFeatures
0
1
0
0
0
167
FFPE-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
168
FFPE-CopyNumber_Clustering_CNMF
1
0
0
0
0
169
FFPE-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
170
FFPE-CopyNumber_Gistic2
0
1
0
0
0
171
FFPE-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
172
FFPE-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
173
FFPE-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
174
FFPE-Correlate_Clinical_vs_Methylation
1
0
0
0
0
175
FFPE-Correlate_Clinical_vs_miR
1
0
0
0
0
176
FFPE-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
177
FFPE-Correlate_Clinical_vs_mRNA
1
0
0
0
0
178
FFPE-Correlate_Clinical_vs_Mutation
1
0
0
0
0
179
FFPE-Correlate_CopyNumber_vs_miR
1
0
0
0
0
180
FFPE-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
181
FFPE-Correlate_Methylation_vs_mRNA
1
0
0
0
0
182
FFPE-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
183
FFPE-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
184
FFPE-Methylation_Clustering_CNMF
1
0
0
0
0
185
FFPE-Methylation_Preprocess
1
0
0
0
0
186
FFPE-miR_FindDirectTargets
1
0
0
0
0
187
FFPE-miR_Mature_Clustering_CNMF
1
0
0
0
0
188
FFPE-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
189
FFPE-miR_Mature_Preprocess
0
1
0
0
0
190
FFPE-mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
191
FFPE-mRNA_lincRNA_CNMF
1
0
0
0
0
192
FFPE-mRNA_Preprocess
0
1
0
0
0
193
FFPE-mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
194
FFPE-mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
195
FFPE-Mutation_APOBEC
0
1
0
0
0
196
FFPE-Mutation_CoOccurrence
1
0
0
0
0
197
FFPE-Mutation_Signature
0
1
0
0
0
198
FFPE-Pathway_GSEA_mRNA
1
0
0
0
0
Total
122
13
0
52
11
This table generated on Thu Jan 26 11:04:15 2017