Broad GDAC Analyses Status
dev Run for Tumor Type: TCGA-CHOL
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Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
0
0
1
0
2
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
3
CopyNumber_Clustering_CNMF
0
0
0
1
0
4
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
5
CopyNumber_Gistic2
0
0
0
1
0
6
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
7
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
8
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
9
Correlate_Clinical_vs_Methylation
1
0
0
0
0
10
Correlate_Clinical_vs_miR
0
1
0
0
0
11
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
12
Correlate_Clinical_vs_mRNA
0
0
0
1
0
13
Correlate_Clinical_vs_Mutation
1
0
0
0
0
14
Correlate_CopyNumber_vs_miR
0
0
0
1
0
15
Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
16
Correlate_Methylation_vs_mRNA
1
0
0
0
0
17
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
18
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
19
Methylation_Clustering_CNMF
1
0
0
0
0
20
Methylation_Preprocess
1
0
0
0
0
21
miR_FindDirectTargets
0
0
0
1
0
22
miR_Mature_Clustering_CNMF
0
0
0
1
0
23
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
24
miR_Mature_Preprocess
0
0
0
1
0
25
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
26
mRNA_lincRNA_CNMF
0
0
0
0
1
27
mRNA_Preprocess
0
0
0
1
0
28
mRNA_protein_coding_Clustering_CNMF
0
0
0
0
1
29
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
0
1
30
Mutation_APOBEC
0
1
0
0
0
31
Mutation_CoOccurrence
0
0
0
1
0
32
Mutation_Signature
0
1
0
0
0
33
Pathway_GSEA_mRNA
0
0
0
0
1
34
TP-Aggregate_AnalysisFeatures
0
0
0
1
0
35
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
36
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
37
TP-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
38
TP-CopyNumber_Gistic2
0
0
0
1
0
39
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
40
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
41
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
42
TP-Correlate_Clinical_vs_Methylation
1
0
0
0
0
43
TP-Correlate_Clinical_vs_miR
0
0
0
1
0
44
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
45
TP-Correlate_Clinical_vs_mRNA
0
0
0
1
0
46
TP-Correlate_Clinical_vs_Mutation
1
0
0
0
0
47
TP-Correlate_CopyNumber_vs_miR
0
0
0
1
0
48
TP-Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
49
TP-Correlate_Methylation_vs_mRNA
1
0
0
0
0
50
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
51
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
52
TP-Methylation_Clustering_CNMF
1
0
0
0
0
53
TP-Methylation_Preprocess
1
0
0
0
0
54
TP-miR_FindDirectTargets
0
0
0
1
0
55
TP-miR_Mature_Clustering_CNMF
0
0
0
1
0
56
TP-miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
57
TP-miR_Mature_Preprocess
0
0
0
1
0
58
TP-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
59
TP-mRNA_lincRNA_CNMF
0
0
0
0
1
60
TP-mRNA_Preprocess
0
0
0
1
0
61
TP-mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
62
TP-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
63
TP-Mutation_APOBEC
0
1
0
0
0
64
TP-Mutation_CoOccurrence
0
0
0
1
0
65
TP-Mutation_Signature
0
1
0
0
0
66
TP-Pathway_GSEA_mRNA
0
0
0
1
0
67
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
68
NT-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
69
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
70
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
71
NT-CopyNumber_Gistic2
0
0
0
0
1
72
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
73
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
74
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
75
NT-Correlate_Clinical_vs_Methylation
1
0
0
0
0
76
NT-Correlate_Clinical_vs_miR
1
0
0
0
0
77
NT-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
78
NT-Correlate_Clinical_vs_mRNA
0
0
0
1
0
79
NT-Correlate_Clinical_vs_Mutation
1
0
0
0
0
80
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
81
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
82
NT-Correlate_Methylation_vs_mRNA
1
0
0
0
0
83
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
84
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
85
NT-Methylation_Clustering_CNMF
1
0
0
0
0
86
NT-Methylation_Preprocess
1
0
0
0
0
87
NT-miR_FindDirectTargets
1
0
0
0
0
88
NT-miR_Mature_Clustering_CNMF
1
0
0
0
0
89
NT-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
90
NT-miR_Mature_Preprocess
0
0
0
1
0
91
NT-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
92
NT-mRNA_lincRNA_CNMF
0
0
0
0
1
93
NT-mRNA_Preprocess
0
0
0
1
0
94
NT-mRNA_protein_coding_Clustering_CNMF
0
0
0
0
1
95
NT-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
0
1
96
NT-Mutation_APOBEC
1
0
0
0
0
97
NT-Mutation_CoOccurrence
1
0
0
0
0
98
NT-Mutation_Signature
1
0
0
0
0
99
NT-Pathway_GSEA_mRNA
1
0
0
0
0
100
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
101
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
102
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
103
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
104
NB-CopyNumber_Gistic2
0
0
0
0
1
105
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
106
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
107
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
108
NB-Correlate_Clinical_vs_Methylation
1
0
0
0
0
109
NB-Correlate_Clinical_vs_miR
1
0
0
0
0
110
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
111
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
112
NB-Correlate_Clinical_vs_Mutation
1
0
0
0
0
113
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
114
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
115
NB-Correlate_Methylation_vs_mRNA
1
0
0
0
0
116
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
117
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
118
NB-Methylation_Clustering_CNMF
1
0
0
0
0
119
NB-Methylation_Preprocess
1
0
0
0
0
120
NB-miR_FindDirectTargets
1
0
0
0
0
121
NB-miR_Mature_Clustering_CNMF
1
0
0
0
0
122
NB-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
123
NB-miR_Mature_Preprocess
1
0
0
0
0
124
NB-mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
125
NB-mRNA_lincRNA_CNMF
1
0
0
0
0
126
NB-mRNA_Preprocess
1
0
0
0
0
127
NB-mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
128
NB-mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
129
NB-Mutation_APOBEC
1
0
0
0
0
130
NB-Mutation_CoOccurrence
1
0
0
0
0
131
NB-Mutation_Signature
1
0
0
0
0
132
NB-Pathway_GSEA_mRNA
1
0
0
0
0
Total
65
7
0
47
13
This table generated on Thu Jan 26 11:04:16 2017