Broad GDAC Analyses Status
dev Run for Tumor Type: TCGA-COADREAD
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Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
0
0
0
1
2
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
3
CopyNumber_Clustering_CNMF
0
0
0
1
0
4
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
5
CopyNumber_Gistic2
0
0
0
1
0
6
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
7
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
8
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
9
Correlate_Clinical_vs_Methylation
1
0
0
0
0
10
Correlate_Clinical_vs_miR
0
1
0
0
0
11
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
12
Correlate_Clinical_vs_mRNA
0
0
0
1
0
13
Correlate_Clinical_vs_Mutation
1
0
0
0
0
14
Correlate_CopyNumber_vs_miR
0
0
0
1
0
15
Correlate_CopyNumber_vs_mRNA
0
1
0
0
0
16
Correlate_Methylation_vs_mRNA
1
0
0
0
0
17
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
18
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
19
Methylation_Clustering_CNMF
1
0
0
0
0
20
Methylation_Preprocess
1
0
0
0
0
21
miR_FindDirectTargets
0
1
0
0
0
22
miR_Mature_Clustering_CNMF
0
0
0
1
0
23
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
24
miR_Mature_Preprocess
0
0
0
1
0
25
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
26
mRNA_lincRNA_CNMF
0
0
0
1
0
27
mRNA_Preprocess
0
0
0
1
0
28
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
29
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
30
Mutation_APOBEC
0
1
0
0
0
31
Mutation_CoOccurrence
1
0
0
0
0
32
Mutation_Signature
0
1
0
0
0
33
Pathway_GSEA_mRNA
0
0
0
1
0
34
TR-Aggregate_AnalysisFeatures
0
0
0
1
0
35
TR-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
36
TR-CopyNumber_Clustering_CNMF
1
0
0
0
0
37
TR-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
38
TR-CopyNumber_Gistic2
0
0
0
1
0
39
TR-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
40
TR-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
41
TR-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
42
TR-Correlate_Clinical_vs_Methylation
1
0
0
0
0
43
TR-Correlate_Clinical_vs_miR
1
0
0
0
0
44
TR-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
45
TR-Correlate_Clinical_vs_mRNA
1
0
0
0
0
46
TR-Correlate_Clinical_vs_Mutation
1
0
0
0
0
47
TR-Correlate_CopyNumber_vs_miR
1
0
0
0
0
48
TR-Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
49
TR-Correlate_Methylation_vs_mRNA
1
0
0
0
0
50
TR-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
51
TR-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
52
TR-Methylation_Clustering_CNMF
1
0
0
0
0
53
TR-Methylation_Preprocess
1
0
0
0
0
54
TR-miR_FindDirectTargets
1
0
0
0
0
55
TR-miR_Mature_Clustering_CNMF
1
0
0
0
0
56
TR-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
57
TR-miR_Mature_Preprocess
0
0
0
1
0
58
TR-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
59
TR-mRNA_lincRNA_CNMF
0
0
0
0
1
60
TR-mRNA_Preprocess
0
0
0
1
0
61
TR-mRNA_protein_coding_Clustering_CNMF
0
0
0
0
1
62
TR-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
0
1
63
TR-Mutation_APOBEC
0
1
0
0
0
64
TR-Mutation_CoOccurrence
0
0
0
0
1
65
TR-Mutation_Signature
0
1
0
0
0
66
TR-Pathway_GSEA_mRNA
1
0
0
0
0
67
TP-Aggregate_AnalysisFeatures
0
0
0
0
1
68
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
69
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
70
TP-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
71
TP-CopyNumber_Gistic2
0
0
0
1
0
72
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
73
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
74
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
75
TP-Correlate_Clinical_vs_Methylation
1
0
0
0
0
76
TP-Correlate_Clinical_vs_miR
0
1
0
0
0
77
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
78
TP-Correlate_Clinical_vs_mRNA
0
0
0
1
0
79
TP-Correlate_Clinical_vs_Mutation
1
0
0
0
0
80
TP-Correlate_CopyNumber_vs_miR
0
0
0
1
0
81
TP-Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
82
TP-Correlate_Methylation_vs_mRNA
1
0
0
0
0
83
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
84
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
85
TP-Methylation_Clustering_CNMF
1
0
0
0
0
86
TP-Methylation_Preprocess
1
0
0
0
0
87
TP-miR_FindDirectTargets
0
0
0
1
0
88
TP-miR_Mature_Clustering_CNMF
0
0
0
1
0
89
TP-miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
90
TP-miR_Mature_Preprocess
0
0
0
1
0
91
TP-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
92
TP-mRNA_lincRNA_CNMF
0
0
0
1
0
93
TP-mRNA_Preprocess
0
0
0
1
0
94
TP-mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
95
TP-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
96
TP-Mutation_APOBEC
0
1
0
0
0
97
TP-Mutation_CoOccurrence
1
0
0
0
0
98
TP-Mutation_Signature
0
1
0
0
0
99
TP-Pathway_GSEA_mRNA
0
0
0
0
1
100
TM-Aggregate_AnalysisFeatures
0
1
0
0
0
101
TM-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
102
TM-CopyNumber_Clustering_CNMF
1
0
0
0
0
103
TM-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
104
TM-CopyNumber_Gistic2
0
0
0
0
1
105
TM-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
106
TM-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
107
TM-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
108
TM-Correlate_Clinical_vs_Methylation
1
0
0
0
0
109
TM-Correlate_Clinical_vs_miR
1
0
0
0
0
110
TM-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
111
TM-Correlate_Clinical_vs_mRNA
1
0
0
0
0
112
TM-Correlate_Clinical_vs_Mutation
1
0
0
0
0
113
TM-Correlate_CopyNumber_vs_miR
1
0
0
0
0
114
TM-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
115
TM-Correlate_Methylation_vs_mRNA
1
0
0
0
0
116
TM-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
117
TM-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
118
TM-Methylation_Clustering_CNMF
1
0
0
0
0
119
TM-Methylation_Preprocess
1
0
0
0
0
120
TM-miR_FindDirectTargets
1
0
0
0
0
121
TM-miR_Mature_Clustering_CNMF
1
0
0
0
0
122
TM-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
123
TM-miR_Mature_Preprocess
0
0
0
1
0
124
TM-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
125
TM-mRNA_lincRNA_CNMF
0
0
0
0
1
126
TM-mRNA_Preprocess
0
0
0
1
0
127
TM-mRNA_protein_coding_Clustering_CNMF
0
0
0
0
1
128
TM-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
0
1
129
TM-Mutation_APOBEC
0
1
0
0
0
130
TM-Mutation_CoOccurrence
1
0
0
0
0
131
TM-Mutation_Signature
0
1
0
0
0
132
TM-Pathway_GSEA_mRNA
1
0
0
0
0
133
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
134
NT-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
135
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
136
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
137
NT-CopyNumber_Gistic2
0
0
0
0
1
138
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
139
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
140
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
141
NT-Correlate_Clinical_vs_Methylation
1
0
0
0
0
142
NT-Correlate_Clinical_vs_miR
1
0
0
0
0
143
NT-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
144
NT-Correlate_Clinical_vs_mRNA
0
0
0
1
0
145
NT-Correlate_Clinical_vs_Mutation
1
0
0
0
0
146
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
147
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
148
NT-Correlate_Methylation_vs_mRNA
1
0
0
0
0
149
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
150
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
151
NT-Methylation_Clustering_CNMF
1
0
0
0
0
152
NT-Methylation_Preprocess
1
0
0
0
0
153
NT-miR_FindDirectTargets
1
0
0
0
0
154
NT-miR_Mature_Clustering_CNMF
1
0
0
0
0
155
NT-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
156
NT-miR_Mature_Preprocess
0
0
0
1
0
157
NT-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
158
NT-mRNA_lincRNA_CNMF
0
0
0
1
0
159
NT-mRNA_Preprocess
0
0
0
1
0
160
NT-mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
161
NT-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
162
NT-Mutation_APOBEC
1
0
0
0
0
163
NT-Mutation_CoOccurrence
1
0
0
0
0
164
NT-Mutation_Signature
1
0
0
0
0
165
NT-Pathway_GSEA_mRNA
0
0
0
1
0
166
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
167
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
168
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
169
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
170
NB-CopyNumber_Gistic2
0
0
0
0
1
171
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
172
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
173
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
174
NB-Correlate_Clinical_vs_Methylation
1
0
0
0
0
175
NB-Correlate_Clinical_vs_miR
1
0
0
0
0
176
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
177
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
178
NB-Correlate_Clinical_vs_Mutation
1
0
0
0
0
179
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
180
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
181
NB-Correlate_Methylation_vs_mRNA
1
0
0
0
0
182
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
183
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
184
NB-Methylation_Clustering_CNMF
1
0
0
0
0
185
NB-Methylation_Preprocess
1
0
0
0
0
186
NB-miR_FindDirectTargets
1
0
0
0
0
187
NB-miR_Mature_Clustering_CNMF
1
0
0
0
0
188
NB-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
189
NB-miR_Mature_Preprocess
1
0
0
0
0
190
NB-mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
191
NB-mRNA_lincRNA_CNMF
1
0
0
0
0
192
NB-mRNA_Preprocess
1
0
0
0
0
193
NB-mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
194
NB-mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
195
NB-Mutation_APOBEC
1
0
0
0
0
196
NB-Mutation_CoOccurrence
1
0
0
0
0
197
NB-Mutation_Signature
1
0
0
0
0
198
NB-Pathway_GSEA_mRNA
1
0
0
0
0
199
FFPE-Aggregate_AnalysisFeatures
0
1
0
0
0
200
FFPE-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
201
FFPE-CopyNumber_Clustering_CNMF
1
0
0
0
0
202
FFPE-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
203
FFPE-CopyNumber_Gistic2
0
1
0
0
0
204
FFPE-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
205
FFPE-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
206
FFPE-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
207
FFPE-Correlate_Clinical_vs_Methylation
1
0
0
0
0
208
FFPE-Correlate_Clinical_vs_miR
1
0
0
0
0
209
FFPE-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
210
FFPE-Correlate_Clinical_vs_mRNA
1
0
0
0
0
211
FFPE-Correlate_Clinical_vs_Mutation
1
0
0
0
0
212
FFPE-Correlate_CopyNumber_vs_miR
1
0
0
0
0
213
FFPE-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
214
FFPE-Correlate_Methylation_vs_mRNA
1
0
0
0
0
215
FFPE-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
216
FFPE-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
217
FFPE-Methylation_Clustering_CNMF
1
0
0
0
0
218
FFPE-Methylation_Preprocess
1
0
0
0
0
219
FFPE-miR_FindDirectTargets
1
0
0
0
0
220
FFPE-miR_Mature_Clustering_CNMF
1
0
0
0
0
221
FFPE-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
222
FFPE-miR_Mature_Preprocess
0
1
0
0
0
223
FFPE-mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
224
FFPE-mRNA_lincRNA_CNMF
1
0
0
0
0
225
FFPE-mRNA_Preprocess
0
1
0
0
0
226
FFPE-mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
227
FFPE-mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
228
FFPE-Mutation_APOBEC
0
1
0
0
0
229
FFPE-Mutation_CoOccurrence
1
0
0
0
0
230
FFPE-Mutation_Signature
0
1
0
0
0
231
FFPE-Pathway_GSEA_mRNA
1
0
0
0
0
Total
134
21
0
61
15
This table generated on Thu Jan 26 11:04:17 2017