| Pipeline | NotRunnable | Runnable | InProcess | Successful | Unsuccessful |
|---|
| 1 | Aggregate_AnalysisFeatures | 0 | 0 | 0 | 1 | 0 |
| 2 | Aggregate_Molecular_Subtype_Clusters | 0 | 0 | 0 | 1 | 0 |
| 3 | CopyNumber_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 4 | CopyNumber_Clustering_CNMF_thresholded | 0 | 0 | 0 | 1 | 0 |
| 5 | CopyNumber_Gistic2 | 0 | 0 | 0 | 1 | 0 |
| 6 | CopyNumber_Gistic2_Postprocess_Focal | 0 | 0 | 0 | 1 | 0 |
| 7 | Correlate_Clinical_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 8 | Correlate_Clinical_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 9 | Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 10 | Correlate_Clinical_vs_miR | 0 | 1 | 0 | 0 | 0 |
| 11 | Correlate_Clinical_vs_Molecular_Subtypes | 0 | 0 | 0 | 1 | 0 |
| 12 | Correlate_Clinical_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 13 | Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 14 | Correlate_CopyNumber_vs_miR | 0 | 0 | 0 | 1 | 0 |
| 15 | Correlate_CopyNumber_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 16 | Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 17 | Correlate_molecularSubtype_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 18 | Correlate_molecularSubtype_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 19 | Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 20 | Methylation_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 21 | miR_FindDirectTargets | 0 | 0 | 0 | 1 | 0 |
| 22 | miR_Mature_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 23 | miR_Mature_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 24 | miR_Mature_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 25 | mRNA_lincRNA_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 26 | mRNA_lincRNA_CNMF | 0 | 0 | 0 | 1 | 0 |
| 27 | mRNA_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 28 | mRNA_protein_coding_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 29 | mRNA_protein_coding_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 30 | Mutation_APOBEC | 0 | 1 | 0 | 0 | 0 |
| 31 | Mutation_CoOccurrence | 0 | 0 | 0 | 0 | 1 |
| 32 | Mutation_Signature | 0 | 1 | 0 | 0 | 0 |
| 33 | Pathway_GSEA_mRNA | 0 | 0 | 0 | 0 | 1 |
| 34 | TB-Aggregate_AnalysisFeatures | 0 | 0 | 0 | 1 | 0 |
| 35 | TB-Aggregate_Molecular_Subtype_Clusters | 0 | 0 | 0 | 1 | 0 |
| 36 | TB-CopyNumber_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 37 | TB-CopyNumber_Clustering_CNMF_thresholded | 0 | 0 | 0 | 1 | 0 |
| 38 | TB-CopyNumber_Gistic2 | 0 | 0 | 0 | 1 | 0 |
| 39 | TB-CopyNumber_Gistic2_Postprocess_Focal | 0 | 0 | 0 | 1 | 0 |
| 40 | TB-Correlate_Clinical_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 41 | TB-Correlate_Clinical_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 42 | TB-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 43 | TB-Correlate_Clinical_vs_miR | 0 | 1 | 0 | 0 | 0 |
| 44 | TB-Correlate_Clinical_vs_Molecular_Subtypes | 0 | 0 | 0 | 1 | 0 |
| 45 | TB-Correlate_Clinical_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 46 | TB-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 47 | TB-Correlate_CopyNumber_vs_miR | 0 | 0 | 0 | 1 | 0 |
| 48 | TB-Correlate_CopyNumber_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 49 | TB-Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 50 | TB-Correlate_molecularSubtype_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 51 | TB-Correlate_molecularSubtype_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 52 | TB-Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 53 | TB-Methylation_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 54 | TB-miR_FindDirectTargets | 0 | 0 | 0 | 1 | 0 |
| 55 | TB-miR_Mature_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 56 | TB-miR_Mature_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 57 | TB-miR_Mature_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 58 | TB-mRNA_lincRNA_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 59 | TB-mRNA_lincRNA_CNMF | 0 | 0 | 0 | 1 | 0 |
| 60 | TB-mRNA_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 61 | TB-mRNA_protein_coding_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 62 | TB-mRNA_protein_coding_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 63 | TB-Mutation_APOBEC | 0 | 1 | 0 | 0 | 0 |
| 64 | TB-Mutation_CoOccurrence | 0 | 0 | 0 | 0 | 1 |
| 65 | TB-Mutation_Signature | 0 | 1 | 0 | 0 | 0 |
| 66 | TB-Pathway_GSEA_mRNA | 0 | 0 | 0 | 0 | 1 |
| 67 | NT-Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
| 68 | NT-Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
| 69 | NT-CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 70 | NT-CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
| 71 | NT-CopyNumber_Gistic2 | 0 | 0 | 0 | 0 | 1 |
| 72 | NT-CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
| 73 | NT-Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 74 | NT-Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 75 | NT-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 76 | NT-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 77 | NT-Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
| 78 | NT-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 79 | NT-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 80 | NT-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 81 | NT-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 82 | NT-Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 83 | NT-Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 84 | NT-Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 85 | NT-Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 86 | NT-Methylation_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 87 | NT-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 88 | NT-miR_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 89 | NT-miR_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 90 | NT-miR_Mature_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 91 | NT-mRNA_lincRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 92 | NT-mRNA_lincRNA_CNMF | 1 | 0 | 0 | 0 | 0 |
| 93 | NT-mRNA_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 94 | NT-mRNA_protein_coding_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 95 | NT-mRNA_protein_coding_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 96 | NT-Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 97 | NT-Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 98 | NT-Mutation_Signature | 1 | 0 | 0 | 0 | 0 |
| 99 | NT-Pathway_GSEA_mRNA | 1 | 0 | 0 | 0 | 0 |
| Total | 41 | 7 | 0 | 46 | 5 |