Broad GDAC Analyses Status
dev Run for Tumor Type: TCGA-MESO

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures00010
2Aggregate_Molecular_Subtype_Clusters00010
3CopyNumber_Clustering_CNMF00010
4CopyNumber_Clustering_CNMF_thresholded00010
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Methylation10000
10Correlate_Clinical_vs_miR01000
11Correlate_Clinical_vs_Molecular_Subtypes00010
12Correlate_Clinical_vs_mRNA00010
13Correlate_Clinical_vs_Mutation10000
14Correlate_CopyNumber_vs_miR00010
15Correlate_CopyNumber_vs_mRNA00010
16Correlate_Methylation_vs_mRNA10000
17Correlate_molecularSubtype_vs_CopyNumber_Arm00010
18Correlate_molecularSubtype_vs_CopyNumber_Focal00010
19Methylation_Clustering_CNMF10000
20Methylation_Preprocess10000
21miR_FindDirectTargets00010
22miR_Mature_Clustering_CNMF00010
23miR_Mature_Clustering_Consensus_Plus00010
24miR_Mature_Preprocess00010
25mRNA_lincRNA_Clustering_Consensus_Plus00010
26mRNA_lincRNA_CNMF00010
27mRNA_Preprocess00010
28mRNA_protein_coding_Clustering_CNMF00010
29mRNA_protein_coding_Clustering_Consensus_Plus00010
30Mutation_APOBEC01000
31Mutation_CoOccurrence00010
32Mutation_Signature01000
33Pathway_GSEA_mRNA00010
34TP-Aggregate_AnalysisFeatures00010
35TP-Aggregate_Molecular_Subtype_Clusters00010
36TP-CopyNumber_Clustering_CNMF00010
37TP-CopyNumber_Clustering_CNMF_thresholded00010
38TP-CopyNumber_Gistic200010
39TP-CopyNumber_Gistic2_Postprocess_Focal00010
40TP-Correlate_Clinical_vs_CopyNumber_Arm00010
41TP-Correlate_Clinical_vs_CopyNumber_Focal00010
42TP-Correlate_Clinical_vs_Methylation10000
43TP-Correlate_Clinical_vs_miR01000
44TP-Correlate_Clinical_vs_Molecular_Subtypes00010
45TP-Correlate_Clinical_vs_mRNA00010
46TP-Correlate_Clinical_vs_Mutation10000
47TP-Correlate_CopyNumber_vs_miR00010
48TP-Correlate_CopyNumber_vs_mRNA00010
49TP-Correlate_Methylation_vs_mRNA10000
50TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
51TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
52TP-Methylation_Clustering_CNMF10000
53TP-Methylation_Preprocess10000
54TP-miR_FindDirectTargets00010
55TP-miR_Mature_Clustering_CNMF00010
56TP-miR_Mature_Clustering_Consensus_Plus00010
57TP-miR_Mature_Preprocess00010
58TP-mRNA_lincRNA_Clustering_Consensus_Plus00010
59TP-mRNA_lincRNA_CNMF00010
60TP-mRNA_Preprocess00010
61TP-mRNA_protein_coding_Clustering_CNMF00010
62TP-mRNA_protein_coding_Clustering_Consensus_Plus00010
63TP-Mutation_APOBEC01000
64TP-Mutation_CoOccurrence00010
65TP-Mutation_Signature01000
66TP-Pathway_GSEA_mRNA00010
67NT-Aggregate_AnalysisFeatures01000
68NT-Aggregate_Molecular_Subtype_Clusters10000
69NT-CopyNumber_Clustering_CNMF10000
70NT-CopyNumber_Clustering_CNMF_thresholded10000
71NT-CopyNumber_Gistic200001
72NT-CopyNumber_Gistic2_Postprocess_Focal10000
73NT-Correlate_Clinical_vs_CopyNumber_Arm10000
74NT-Correlate_Clinical_vs_CopyNumber_Focal10000
75NT-Correlate_Clinical_vs_Methylation10000
76NT-Correlate_Clinical_vs_miR10000
77NT-Correlate_Clinical_vs_Molecular_Subtypes10000
78NT-Correlate_Clinical_vs_mRNA10000
79NT-Correlate_Clinical_vs_Mutation10000
80NT-Correlate_CopyNumber_vs_miR10000
81NT-Correlate_CopyNumber_vs_mRNA10000
82NT-Correlate_Methylation_vs_mRNA10000
83NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
84NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
85NT-Methylation_Clustering_CNMF10000
86NT-Methylation_Preprocess10000
87NT-miR_FindDirectTargets10000
88NT-miR_Mature_Clustering_CNMF10000
89NT-miR_Mature_Clustering_Consensus_Plus10000
90NT-miR_Mature_Preprocess10000
91NT-mRNA_lincRNA_Clustering_Consensus_Plus10000
92NT-mRNA_lincRNA_CNMF10000
93NT-mRNA_Preprocess10000
94NT-mRNA_protein_coding_Clustering_CNMF10000
95NT-mRNA_protein_coding_Clustering_Consensus_Plus10000
96NT-Mutation_APOBEC10000
97NT-Mutation_CoOccurrence10000
98NT-Mutation_Signature10000
99NT-Pathway_GSEA_mRNA10000
100NB-Aggregate_AnalysisFeatures01000
101NB-Aggregate_Molecular_Subtype_Clusters10000
102NB-CopyNumber_Clustering_CNMF10000
103NB-CopyNumber_Clustering_CNMF_thresholded10000
104NB-CopyNumber_Gistic200001
105NB-CopyNumber_Gistic2_Postprocess_Focal10000
106NB-Correlate_Clinical_vs_CopyNumber_Arm10000
107NB-Correlate_Clinical_vs_CopyNumber_Focal10000
108NB-Correlate_Clinical_vs_Methylation10000
109NB-Correlate_Clinical_vs_miR10000
110NB-Correlate_Clinical_vs_Molecular_Subtypes10000
111NB-Correlate_Clinical_vs_mRNA10000
112NB-Correlate_Clinical_vs_Mutation10000
113NB-Correlate_CopyNumber_vs_miR10000
114NB-Correlate_CopyNumber_vs_mRNA10000
115NB-Correlate_Methylation_vs_mRNA10000
116NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
117NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
118NB-Methylation_Clustering_CNMF10000
119NB-Methylation_Preprocess10000
120NB-miR_FindDirectTargets10000
121NB-miR_Mature_Clustering_CNMF10000
122NB-miR_Mature_Clustering_Consensus_Plus10000
123NB-miR_Mature_Preprocess10000
124NB-mRNA_lincRNA_Clustering_Consensus_Plus10000
125NB-mRNA_lincRNA_CNMF10000
126NB-mRNA_Preprocess10000
127NB-mRNA_protein_coding_Clustering_CNMF10000
128NB-mRNA_protein_coding_Clustering_Consensus_Plus10000
129NB-Mutation_APOBEC10000
130NB-Mutation_CoOccurrence10000
131NB-Mutation_Signature10000
132NB-Pathway_GSEA_mRNA10000
Total7280502

This table generated on Thu Jan 26 11:04:20 2017