Broad GDAC dev Run Status : TCGA-PCPG

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Runnable	Successful	Unsuccessful
1	Aggregate_AnalysisFeatures	0	0	0	1
2	Aggregate_Molecular_Subtype_Clusters	0	0	1	0
3	CopyNumber_Clustering_CNMF	0	0	1	0
4	CopyNumber_Clustering_CNMF_thresholded	0	0	1	0
5	CopyNumber_Gistic2	0	0	1	0
6	CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
7	Correlate_Clinical_vs_CopyNumber_Arm	0	0	1	0
8	Correlate_Clinical_vs_CopyNumber_Focal	0	0	1	0
9	Correlate_Clinical_vs_Methylation	1	0	0	0
10	Correlate_Clinical_vs_miR	0	1	0	0
11	Correlate_Clinical_vs_Molecular_Subtypes	0	0	1	0
12	Correlate_Clinical_vs_mRNA	0	0	1	0
13	Correlate_Clinical_vs_Mutation	1	0	0	0
14	Correlate_CopyNumber_vs_miR	0	0	1	0
15	Correlate_CopyNumber_vs_mRNA	0	0	1	0
16	Correlate_Methylation_vs_mRNA	1	0	0	0
17	Correlate_molecularSubtype_vs_CopyNumber_Arm	0	0	1	0
18	Correlate_molecularSubtype_vs_CopyNumber_Focal	0	0	1	0
19	Methylation_Clustering_CNMF	1	0	0	0
20	Methylation_Preprocess	1	0	0	0
21	miR_FindDirectTargets	0	0	1	0
22	miR_Mature_Clustering_CNMF	0	0	1	0
23	miR_Mature_Clustering_Consensus_Plus	0	0	1	0
24	miR_Mature_Preprocess	0	0	1	0
25	mRNA_lincRNA_Clustering_Consensus_Plus	0	0	1	0
26	mRNA_lincRNA_CNMF	0	0	1	0
27	mRNA_Preprocess	0	0	1	0
28	mRNA_protein_coding_Clustering_CNMF	0	0	1	0
29	mRNA_protein_coding_Clustering_Consensus_Plus	0	0	1	0
30	Mutation_APOBEC	0	1	0	0
31	Mutation_CoOccurrence	1	0	0	0
32	Mutation_Signature	0	1	0	0
33	Pathway_GSEA_mRNA	0	0	0	1
34	TP-Aggregate_AnalysisFeatures	0	0	1	0
35	TP-Aggregate_Molecular_Subtype_Clusters	0	0	1	0
36	TP-CopyNumber_Clustering_CNMF	0	0	1	0
37	TP-CopyNumber_Clustering_CNMF_thresholded	0	0	1	0
38	TP-CopyNumber_Gistic2	0	0	1	0
39	TP-CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
40	TP-Correlate_Clinical_vs_CopyNumber_Arm	0	0	1	0
41	TP-Correlate_Clinical_vs_CopyNumber_Focal	0	0	1	0
42	TP-Correlate_Clinical_vs_Methylation	1	0	0	0
43	TP-Correlate_Clinical_vs_miR	0	1	0	0
44	TP-Correlate_Clinical_vs_Molecular_Subtypes	0	0	1	0
45	TP-Correlate_Clinical_vs_mRNA	0	0	1	0
46	TP-Correlate_Clinical_vs_Mutation	1	0	0	0
47	TP-Correlate_CopyNumber_vs_miR	0	0	1	0
48	TP-Correlate_CopyNumber_vs_mRNA	0	0	1	0
49	TP-Correlate_Methylation_vs_mRNA	1	0	0	0
50	TP-Correlate_molecularSubtype_vs_CopyNumber_Arm	0	0	1	0
51	TP-Correlate_molecularSubtype_vs_CopyNumber_Focal	0	0	1	0
52	TP-Methylation_Clustering_CNMF	1	0	0	0
53	TP-Methylation_Preprocess	1	0	0	0
54	TP-miR_FindDirectTargets	0	0	1	0
55	TP-miR_Mature_Clustering_CNMF	0	0	1	0
56	TP-miR_Mature_Clustering_Consensus_Plus	0	0	1	0
57	TP-miR_Mature_Preprocess	0	0	1	0
58	TP-mRNA_lincRNA_Clustering_Consensus_Plus	0	0	1	0
59	TP-mRNA_lincRNA_CNMF	0	0	1	0
60	TP-mRNA_Preprocess	0	0	1	0
61	TP-mRNA_protein_coding_Clustering_CNMF	0	0	1	0
62	TP-mRNA_protein_coding_Clustering_Consensus_Plus	0	0	1	0
63	TP-Mutation_APOBEC	0	1	0	0
64	TP-Mutation_CoOccurrence	0	0	1	0
65	TP-Mutation_Signature	0	1	0	0
66	TP-Pathway_GSEA_mRNA	0	0	1	0
67	TM-Aggregate_AnalysisFeatures	0	0	0	1
68	TM-Aggregate_Molecular_Subtype_Clusters	1	0	0	0
69	TM-CopyNumber_Clustering_CNMF	1	0	0	0
70	TM-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
71	TM-CopyNumber_Gistic2	0	0	1	0
72	TM-CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
73	TM-Correlate_Clinical_vs_CopyNumber_Arm	0	0	0	1
74	TM-Correlate_Clinical_vs_CopyNumber_Focal	0	0	0	1
75	TM-Correlate_Clinical_vs_Methylation	1	0	0	0
76	TM-Correlate_Clinical_vs_miR	1	0	0	0
77	TM-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
78	TM-Correlate_Clinical_vs_mRNA	0	0	0	1
79	TM-Correlate_Clinical_vs_Mutation	1	0	0	0
80	TM-Correlate_CopyNumber_vs_miR	1	0	0	0
81	TM-Correlate_CopyNumber_vs_mRNA	0	0	1	0
82	TM-Correlate_Methylation_vs_mRNA	1	0	0	0
83	TM-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
84	TM-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
85	TM-Methylation_Clustering_CNMF	1	0	0	0
86	TM-Methylation_Preprocess	1	0	0	0
87	TM-miR_FindDirectTargets	1	0	0	0
88	TM-miR_Mature_Clustering_CNMF	1	0	0	0
89	TM-miR_Mature_Clustering_Consensus_Plus	1	0	0	0
90	TM-miR_Mature_Preprocess	0	0	1	0
91	TM-mRNA_lincRNA_Clustering_Consensus_Plus	0	0	0	1
92	TM-mRNA_lincRNA_CNMF	0	0	0	1
93	TM-mRNA_Preprocess	0	0	1	0
94	TM-mRNA_protein_coding_Clustering_CNMF	0	0	0	1
95	TM-mRNA_protein_coding_Clustering_Consensus_Plus	0	0	0	1
96	TM-Mutation_APOBEC	0	1	0	0
97	TM-Mutation_CoOccurrence	1	0	0	0
98	TM-Mutation_Signature	0	1	0	0
99	TM-Pathway_GSEA_mRNA	1	0	0	0
100	TAP-Aggregate_AnalysisFeatures	0	0	1	0
101	TAP-Aggregate_Molecular_Subtype_Clusters	1	0	0	0
102	TAP-CopyNumber_Clustering_CNMF	1	0	0	0
103	TAP-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
104	TAP-CopyNumber_Gistic2	0	0	1	0
105	TAP-CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
106	TAP-Correlate_Clinical_vs_CopyNumber_Arm	0	0	0	1
107	TAP-Correlate_Clinical_vs_CopyNumber_Focal	0	0	0	1
108	TAP-Correlate_Clinical_vs_Methylation	1	0	0	0
109	TAP-Correlate_Clinical_vs_miR	1	0	0	0
110	TAP-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
111	TAP-Correlate_Clinical_vs_mRNA	0	0	0	1
112	TAP-Correlate_Clinical_vs_Mutation	1	0	0	0
113	TAP-Correlate_CopyNumber_vs_miR	1	0	0	0
114	TAP-Correlate_CopyNumber_vs_mRNA	0	0	1	0
115	TAP-Correlate_Methylation_vs_mRNA	1	0	0	0
116	TAP-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
117	TAP-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
118	TAP-Methylation_Clustering_CNMF	1	0	0	0
119	TAP-Methylation_Preprocess	1	0	0	0
120	TAP-miR_FindDirectTargets	1	0	0	0
121	TAP-miR_Mature_Clustering_CNMF	1	0	0	0
122	TAP-miR_Mature_Clustering_Consensus_Plus	1	0	0	0
123	TAP-miR_Mature_Preprocess	0	0	1	0
124	TAP-mRNA_lincRNA_Clustering_Consensus_Plus	0	0	0	1
125	TAP-mRNA_lincRNA_CNMF	0	0	0	1
126	TAP-mRNA_Preprocess	0	0	1	0
127	TAP-mRNA_protein_coding_Clustering_CNMF	0	0	0	1
128	TAP-mRNA_protein_coding_Clustering_Consensus_Plus	0	0	0	1
129	TAP-Mutation_APOBEC	0	1	0	0
130	TAP-Mutation_CoOccurrence	0	0	0	1
131	TAP-Mutation_Signature	0	1	0	0
132	TAP-Pathway_GSEA_mRNA	1	0	0	0
133	NT-Aggregate_AnalysisFeatures	0	1	0	0
134	NT-Aggregate_Molecular_Subtype_Clusters	1	0	0	0
135	NT-CopyNumber_Clustering_CNMF	1	0	0	0
136	NT-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
137	NT-CopyNumber_Gistic2	0	0	0	1
138	NT-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
139	NT-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
140	NT-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
141	NT-Correlate_Clinical_vs_Methylation	1	0	0	0
142	NT-Correlate_Clinical_vs_miR	1	0	0	0
143	NT-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
144	NT-Correlate_Clinical_vs_mRNA	0	0	0	1
145	NT-Correlate_Clinical_vs_Mutation	1	0	0	0
146	NT-Correlate_CopyNumber_vs_miR	1	0	0	0
147	NT-Correlate_CopyNumber_vs_mRNA	1	0	0	0
148	NT-Correlate_Methylation_vs_mRNA	1	0	0	0
149	NT-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
150	NT-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
151	NT-Methylation_Clustering_CNMF	1	0	0	0
152	NT-Methylation_Preprocess	1	0	0	0
153	NT-miR_FindDirectTargets	1	0	0	0
154	NT-miR_Mature_Clustering_CNMF	1	0	0	0
155	NT-miR_Mature_Clustering_Consensus_Plus	1	0	0	0
156	NT-miR_Mature_Preprocess	0	0	1	0
157	NT-mRNA_lincRNA_Clustering_Consensus_Plus	0	0	0	1
158	NT-mRNA_lincRNA_CNMF	0	0	0	1
159	NT-mRNA_Preprocess	0	0	1	0
160	NT-mRNA_protein_coding_Clustering_CNMF	0	0	0	1
161	NT-mRNA_protein_coding_Clustering_Consensus_Plus	0	0	0	1
162	NT-Mutation_APOBEC	1	0	0	0
163	NT-Mutation_CoOccurrence	1	0	0	0
164	NT-Mutation_Signature	1	0	0	0
165	NT-Pathway_GSEA_mRNA	1	0	0	0
166	NB-Aggregate_AnalysisFeatures	0	1	0	0
167	NB-Aggregate_Molecular_Subtype_Clusters	1	0	0	0
168	NB-CopyNumber_Clustering_CNMF	1	0	0	0
169	NB-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
170	NB-CopyNumber_Gistic2	0	0	0	1
171	NB-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
172	NB-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
173	NB-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
174	NB-Correlate_Clinical_vs_Methylation	1	0	0	0
175	NB-Correlate_Clinical_vs_miR	1	0	0	0
176	NB-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
177	NB-Correlate_Clinical_vs_mRNA	1	0	0	0
178	NB-Correlate_Clinical_vs_Mutation	1	0	0	0
179	NB-Correlate_CopyNumber_vs_miR	1	0	0	0
180	NB-Correlate_CopyNumber_vs_mRNA	1	0	0	0
181	NB-Correlate_Methylation_vs_mRNA	1	0	0	0
182	NB-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
183	NB-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
184	NB-Methylation_Clustering_CNMF	1	0	0	0
185	NB-Methylation_Preprocess	1	0	0	0
186	NB-miR_FindDirectTargets	1	0	0	0
187	NB-miR_Mature_Clustering_CNMF	1	0	0	0
188	NB-miR_Mature_Clustering_Consensus_Plus	1	0	0	0
189	NB-miR_Mature_Preprocess	1	0	0	0
190	NB-mRNA_lincRNA_Clustering_Consensus_Plus	1	0	0	0
191	NB-mRNA_lincRNA_CNMF	1	0	0	0
192	NB-mRNA_Preprocess	1	0	0	0
193	NB-mRNA_protein_coding_Clustering_CNMF	1	0	0	0
194	NB-mRNA_protein_coding_Clustering_Consensus_Plus	1	0	0	0
195	NB-Mutation_APOBEC	1	0	0	0
196	NB-Mutation_CoOccurrence	1	0	0	0
197	NB-Mutation_Signature	1	0	0	0
198	NB-Pathway_GSEA_mRNA	1	0	0	0
	Total	101	12	60	25

This table generated on Thu Jan 26 11:04:21 2017

Broad GDAC Analyses Status dev Run for Tumor Type: TCGA-PCPG

Broad GDAC Analyses Status
dev Run for Tumor Type: TCGA-PCPG