Broad GDAC Analyses Status
dev Run for Tumor Type: THYM
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
THYM
124
124
123
0
124
0
120
0
124
90
123
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
1
0
0
0
2
Aggregate_Gene_Status
1
0
0
0
0
3
Aggregate_Molecular_Subtype_Clusters
0
1
0
0
0
4
Append_CustomClinical
0
1
0
0
0
5
CoMut2.0
1
0
0
0
0
6
CoMut2CV
1
0
0
0
0
7
CoMutCV
1
0
0
0
0
8
CopyNumber_Clustering_CNMF
1
0
0
0
0
9
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
10
CopyNumber_Gistic2
0
1
0
0
0
11
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
12
CopyNumberLowPass_Gistic2
1
0
0
0
0
13
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
14
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
15
Correlate_Clinical_vs_Methylation
1
0
0
0
0
16
Correlate_Clinical_vs_miR
1
0
0
0
0
17
Correlate_Clinical_vs_miRseq
1
0
0
0
0
18
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
19
Correlate_Clinical_vs_mRNA
1
0
0
0
0
20
Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
21
Correlate_Clinical_vs_Mutation
1
0
0
0
0
22
Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
23
Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
24
Correlate_Clinical_vs_MutationRate
1
0
0
0
0
25
Correlate_Clinical_vs_RPPA
1
0
0
0
0
26
Correlate_CopyNumber_vs_miR
1
0
0
0
0
27
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
28
Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
29
Correlate_Methylation_vs_mRNA
0
1
0
0
0
30
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
31
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
32
Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
33
Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
34
GenerateStickFigures2.0
1
0
0
0
0
35
GenerateStickFigures2CV
1
0
0
0
0
36
GenerateStickFiguresCV
1
0
0
0
0
37
iClusterPlus
1
0
0
0
0
38
LegoPlotter2.0
1
0
0
0
0
39
LegoPlotter2CV
1
0
0
0
0
40
LegoPlotterCV
1
0
0
0
0
41
Methylation_Clustering_CNMF
0
1
0
0
0
42
miR_Clustering_CNMF
1
0
0
0
0
43
miR_Clustering_Consensus_Plus
1
0
0
0
0
44
miR_FindDirectTargets
1
0
0
0
0
45
miRseq_Clustering_CNMF
0
1
0
0
0
46
miRseq_Clustering_Consensus_Plus
0
1
0
0
0
47
miRseq_FindDirectTargets
0
1
0
0
0
48
miRseq_Mature_Clustering_CNMF
0
1
0
0
0
49
miRseq_Mature_Clustering_Consensus_Plus
0
1
0
0
0
50
mRNA_Clustering_CNMF
1
0
0
0
0
51
mRNA_Clustering_Consensus_Plus
1
0
0
0
0
52
mRNAseq_Clustering_CNMF
0
1
0
0
0
53
mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
54
Mutation_APOBEC
1
0
0
0
0
55
Mutation_Assessor
1
0
0
0
0
56
Mutation_CHASM
1
0
0
0
0
57
Mutation_CoOccurrence
1
0
0
0
0
58
Mutation_CoOccurrence_Custom
1
0
0
0
0
59
MutSigNozzleReport2.0
1
0
0
0
0
60
MutSigNozzleReport2CV
1
0
0
0
0
61
MutSigNozzleReportCV
1
0
0
0
0
62
MutSigPreprocess2.0
1
0
0
0
0
63
MutSigRun2.0
1
0
0
0
0
64
MutSigRun2CV
1
0
0
0
0
65
MutSigRunCV
1
0
0
0
0
66
Paradigm_mRNA
1
0
0
0
0
67
Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
68
Paradigm_Prepare_mRNA
1
0
0
0
0
69
Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
70
Paradigm_Prepare_RNASeq
1
0
0
0
0
71
Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
72
Paradigm_Preprocess_mRNA
1
0
0
0
0
73
ParadigmPreprocess_mRNA
1
0
0
0
0
74
Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
75
ParadigmPreprocess_RNASeq
0
1
0
0
0
76
Paradigm_Preprocess_RNASeq
1
0
0
0
0
77
Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
78
Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
79
Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
80
Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
81
Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
82
Paradigm_RNASeq
1
0
0
0
0
83
Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
84
Pathway_FindEnrichedGenes
1
0
0
0
0
85
Pathway_GSEA_mRNAseq
1
0
0
0
0
86
Pathway_Hotnet
1
0
0
0
0
87
Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
88
Pathway_Paradigm_mRNA
1
0
0
0
0
89
Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
90
Pathway_Paradigm_RNASeq
1
0
0
0
0
91
Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
92
ProcessCoverageForMutSig2.0
1
0
0
0
0
93
RPPA_Clustering_CNMF
0
1
0
0
0
94
RPPA_Clustering_Consensus_Plus
0
1
0
0
0
95
TP-Aggregate_AnalysisFeatures
0
1
0
0
0
96
TP-Aggregate_Gene_Status
0
1
0
0
0
97
TP-Aggregate_Molecular_Subtype_Clusters
0
1
0
0
0
98
TP-Append_CustomClinical
0
1
0
0
0
99
TP-CoMut2.0
1
0
0
0
0
100
TP-CoMut2CV
0
1
0
0
0
101
TP-CoMutCV
1
0
0
0
0
102
TP-CopyNumber_Clustering_CNMF
1
0
0
0
0
103
TP-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
104
TP-CopyNumber_Gistic2
0
0
0
1
0
105
TP-CopyNumber_Gistic2_Postprocess_Focal
0
1
0
0
0
106
TP-CopyNumberLowPass_Gistic2
1
0
0
0
0
107
TP-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
108
TP-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
109
TP-Correlate_Clinical_vs_Methylation
1
0
0
0
0
110
TP-Correlate_Clinical_vs_miR
1
0
0
0
0
111
TP-Correlate_Clinical_vs_miRseq
1
0
0
0
0
112
TP-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
113
TP-Correlate_Clinical_vs_mRNA
1
0
0
0
0
114
TP-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
115
TP-Correlate_Clinical_vs_Mutation
1
0
0
0
0
116
TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
117
TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
118
TP-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
119
TP-Correlate_Clinical_vs_RPPA
1
0
0
0
0
120
TP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
121
TP-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
122
TP-Correlate_CopyNumber_vs_mRNAseq
0
1
0
0
0
123
TP-Correlate_Methylation_vs_mRNA
0
1
0
0
0
124
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
125
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
126
TP-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
127
TP-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
128
TP-GenerateStickFigures2.0
1
0
0
0
0
129
TP-GenerateStickFigures2CV
0
1
0
0
0
130
TP-GenerateStickFiguresCV
1
0
0
0
0
131
TP-iClusterPlus
0
1
0
0
0
132
TP-LegoPlotter2.0
1
0
0
0
0
133
TP-LegoPlotter2CV
0
1
0
0
0
134
TP-LegoPlotterCV
1
0
0
0
0
135
TP-Methylation_Clustering_CNMF
0
1
0
0
0
136
TP-miR_Clustering_CNMF
1
0
0
0
0
137
TP-miR_Clustering_Consensus_Plus
1
0
0
0
0
138
TP-miR_FindDirectTargets
1
0
0
0
0
139
TP-miRseq_Clustering_CNMF
0
1
0
0
0
140
TP-miRseq_Clustering_Consensus_Plus
0
1
0
0
0
141
TP-miRseq_FindDirectTargets
0
1
0
0
0
142
TP-miRseq_Mature_Clustering_CNMF
0
1
0
0
0
143
TP-miRseq_Mature_Clustering_Consensus_Plus
0
1
0
0
0
144
TP-mRNA_Clustering_CNMF
1
0
0
0
0
145
TP-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
146
TP-mRNAseq_Clustering_CNMF
0
1
0
0
0
147
TP-mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
148
TP-Mutation_APOBEC
0
1
0
0
0
149
TP-Mutation_Assessor
0
1
0
0
0
150
TP-Mutation_CHASM
0
1
0
0
0
151
TP-Mutation_CoOccurrence
1
0
0
0
0
152
TP-Mutation_CoOccurrence_Custom
1
0
0
0
0
153
TP-MutSigNozzleReport2.0
1
0
0
0
0
154
TP-MutSigNozzleReport2CV
0
1
0
0
0
155
TP-MutSigNozzleReportCV
1
0
0
0
0
156
TP-MutSigPreprocess2.0
0
1
0
0
0
157
TP-MutSigRun2.0
1
0
0
0
0
158
TP-MutSigRun2CV
0
0
0
1
0
159
TP-MutSigRunCV
0
1
0
0
0
160
TP-Paradigm_mRNA
1
0
0
0
0
161
TP-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
162
TP-Paradigm_Prepare_mRNA
1
0
0
0
0
163
TP-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
164
TP-Paradigm_Prepare_RNASeq
1
0
0
0
0
165
TP-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
166
TP-Paradigm_Preprocess_mRNA
1
0
0
0
0
167
TP-ParadigmPreprocess_mRNA
1
0
0
0
0
168
TP-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
169
TP-ParadigmPreprocess_RNASeq
0
1
0
0
0
170
TP-Paradigm_Preprocess_RNASeq
1
0
0
0
0
171
TP-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
172
TP-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
173
TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
174
TP-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
175
TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
176
TP-Paradigm_RNASeq
1
0
0
0
0
177
TP-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
178
TP-Pathway_FindEnrichedGenes
1
0
0
0
0
179
TP-Pathway_GSEA_mRNAseq
1
0
0
0
0
180
TP-Pathway_Hotnet
0
0
0
1
0
181
TP-Pathway_Overlaps_MSigDB_MutSig2CV
0
1
0
0
0
182
TP-Pathway_Paradigm_mRNA
1
0
0
0
0
183
TP-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
184
TP-Pathway_Paradigm_RNASeq
1
0
0
0
0
185
TP-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
186
TP-ProcessCoverageForMutSig2.0
1
0
0
0
0
187
TP-RPPA_Clustering_CNMF
0
1
0
0
0
188
TP-RPPA_Clustering_Consensus_Plus
0
1
0
0
0
189
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
190
NT-Aggregate_Gene_Status
1
0
0
0
0
191
NT-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
192
NT-Append_CustomClinical
0
1
0
0
0
193
NT-CoMut2.0
1
0
0
0
0
194
NT-CoMut2CV
1
0
0
0
0
195
NT-CoMutCV
1
0
0
0
0
196
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
197
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
198
NT-CopyNumber_Gistic2
0
1
0
0
0
199
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
200
NT-CopyNumberLowPass_Gistic2
1
0
0
0
0
201
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
202
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
203
NT-Correlate_Clinical_vs_Methylation
1
0
0
0
0
204
NT-Correlate_Clinical_vs_miR
1
0
0
0
0
205
NT-Correlate_Clinical_vs_miRseq
1
0
0
0
0
206
NT-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
207
NT-Correlate_Clinical_vs_mRNA
1
0
0
0
0
208
NT-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
209
NT-Correlate_Clinical_vs_Mutation
1
0
0
0
0
210
NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
211
NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
212
NT-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
213
NT-Correlate_Clinical_vs_RPPA
1
0
0
0
0
214
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
215
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
216
NT-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
217
NT-Correlate_Methylation_vs_mRNA
1
0
0
0
0
218
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
219
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
220
NT-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
221
NT-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
222
NT-GenerateStickFigures2.0
1
0
0
0
0
223
NT-GenerateStickFigures2CV
1
0
0
0
0
224
NT-GenerateStickFiguresCV
1
0
0
0
0
225
NT-iClusterPlus
1
0
0
0
0
226
NT-LegoPlotter2.0
1
0
0
0
0
227
NT-LegoPlotter2CV
1
0
0
0
0
228
NT-LegoPlotterCV
1
0
0
0
0
229
NT-Methylation_Clustering_CNMF
0
1
0
0
0
230
NT-miR_Clustering_CNMF
1
0
0
0
0
231
NT-miR_Clustering_Consensus_Plus
1
0
0
0
0
232
NT-miR_FindDirectTargets
1
0
0
0
0
233
NT-miRseq_Clustering_CNMF
1
0
0
0
0
234
NT-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
235
NT-miRseq_FindDirectTargets
1
0
0
0
0
236
NT-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
237
NT-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
238
NT-mRNA_Clustering_CNMF
1
0
0
0
0
239
NT-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
240
NT-mRNAseq_Clustering_CNMF
1
0
0
0
0
241
NT-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
242
NT-Mutation_APOBEC
1
0
0
0
0
243
NT-Mutation_Assessor
1
0
0
0
0
244
NT-Mutation_CHASM
1
0
0
0
0
245
NT-Mutation_CoOccurrence
1
0
0
0
0
246
NT-Mutation_CoOccurrence_Custom
1
0
0
0
0
247
NT-MutSigNozzleReport2.0
1
0
0
0
0
248
NT-MutSigNozzleReport2CV
1
0
0
0
0
249
NT-MutSigNozzleReportCV
1
0
0
0
0
250
NT-MutSigPreprocess2.0
1
0
0
0
0
251
NT-MutSigRun2.0
1
0
0
0
0
252
NT-MutSigRun2CV
1
0
0
0
0
253
NT-MutSigRunCV
1
0
0
0
0
254
NT-Paradigm_mRNA
1
0
0
0
0
255
NT-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
256
NT-Paradigm_Prepare_mRNA
1
0
0
0
0
257
NT-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
258
NT-Paradigm_Prepare_RNASeq
1
0
0
0
0
259
NT-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
260
NT-Paradigm_Preprocess_mRNA
1
0
0
0
0
261
NT-ParadigmPreprocess_mRNA
1
0
0
0
0
262
NT-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
263
NT-ParadigmPreprocess_RNASeq
0
1
0
0
0
264
NT-Paradigm_Preprocess_RNASeq
1
0
0
0
0
265
NT-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
266
NT-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
267
NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
268
NT-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
269
NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
270
NT-Paradigm_RNASeq
1
0
0
0
0
271
NT-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
272
NT-Pathway_FindEnrichedGenes
1
0
0
0
0
273
NT-Pathway_GSEA_mRNAseq
1
0
0
0
0
274
NT-Pathway_Hotnet
1
0
0
0
0
275
NT-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
276
NT-Pathway_Paradigm_mRNA
1
0
0
0
0
277
NT-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
278
NT-Pathway_Paradigm_RNASeq
1
0
0
0
0
279
NT-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
280
NT-ProcessCoverageForMutSig2.0
1
0
0
0
0
281
NT-RPPA_Clustering_CNMF
1
0
0
0
0
282
NT-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
283
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
284
NB-Aggregate_Gene_Status
1
0
0
0
0
285
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
286
NB-Append_CustomClinical
0
1
0
0
0
287
NB-CoMut2.0
1
0
0
0
0
288
NB-CoMut2CV
1
0
0
0
0
289
NB-CoMutCV
1
0
0
0
0
290
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
291
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
292
NB-CopyNumber_Gistic2
0
1
0
0
0
293
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
294
NB-CopyNumberLowPass_Gistic2
1
0
0
0
0
295
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
296
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
297
NB-Correlate_Clinical_vs_Methylation
1
0
0
0
0
298
NB-Correlate_Clinical_vs_miR
1
0
0
0
0
299
NB-Correlate_Clinical_vs_miRseq
1
0
0
0
0
300
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
301
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
302
NB-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
303
NB-Correlate_Clinical_vs_Mutation
1
0
0
0
0
304
NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
305
NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
306
NB-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
307
NB-Correlate_Clinical_vs_RPPA
1
0
0
0
0
308
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
309
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
310
NB-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
311
NB-Correlate_Methylation_vs_mRNA
1
0
0
0
0
312
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
313
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
314
NB-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
315
NB-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
316
NB-GenerateStickFigures2.0
1
0
0
0
0
317
NB-GenerateStickFigures2CV
1
0
0
0
0
318
NB-GenerateStickFiguresCV
1
0
0
0
0
319
NB-iClusterPlus
1
0
0
0
0
320
NB-LegoPlotter2.0
1
0
0
0
0
321
NB-LegoPlotter2CV
1
0
0
0
0
322
NB-LegoPlotterCV
1
0
0
0
0
323
NB-Methylation_Clustering_CNMF
1
0
0
0
0
324
NB-miR_Clustering_CNMF
1
0
0
0
0
325
NB-miR_Clustering_Consensus_Plus
1
0
0
0
0
326
NB-miR_FindDirectTargets
1
0
0
0
0
327
NB-miRseq_Clustering_CNMF
1
0
0
0
0
328
NB-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
329
NB-miRseq_FindDirectTargets
1
0
0
0
0
330
NB-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
331
NB-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
332
NB-mRNA_Clustering_CNMF
1
0
0
0
0
333
NB-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
334
NB-mRNAseq_Clustering_CNMF
1
0
0
0
0
335
NB-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
336
NB-Mutation_APOBEC
1
0
0
0
0
337
NB-Mutation_Assessor
1
0
0
0
0
338
NB-Mutation_CHASM
1
0
0
0
0
339
NB-Mutation_CoOccurrence
1
0
0
0
0
340
NB-Mutation_CoOccurrence_Custom
1
0
0
0
0
341
NB-MutSigNozzleReport2.0
1
0
0
0
0
342
NB-MutSigNozzleReport2CV
1
0
0
0
0
343
NB-MutSigNozzleReportCV
1
0
0
0
0
344
NB-MutSigPreprocess2.0
1
0
0
0
0
345
NB-MutSigRun2.0
1
0
0
0
0
346
NB-MutSigRun2CV
1
0
0
0
0
347
NB-MutSigRunCV
1
0
0
0
0
348
NB-Paradigm_mRNA
1
0
0
0
0
349
NB-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
350
NB-Paradigm_Prepare_mRNA
1
0
0
0
0
351
NB-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
352
NB-Paradigm_Prepare_RNASeq
1
0
0
0
0
353
NB-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
354
NB-Paradigm_Preprocess_mRNA
1
0
0
0
0
355
NB-ParadigmPreprocess_mRNA
1
0
0
0
0
356
NB-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
357
NB-Paradigm_Preprocess_RNASeq
1
0
0
0
0
358
NB-ParadigmPreprocess_RNASeq
1
0
0
0
0
359
NB-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
360
NB-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
361
NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
362
NB-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
363
NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
364
NB-Paradigm_RNASeq
1
0
0
0
0
365
NB-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
366
NB-Pathway_FindEnrichedGenes
1
0
0
0
0
367
NB-Pathway_GSEA_mRNAseq
1
0
0
0
0
368
NB-Pathway_Hotnet
1
0
0
0
0
369
NB-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
370
NB-Pathway_Paradigm_mRNA
1
0
0
0
0
371
NB-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
372
NB-Pathway_Paradigm_RNASeq
1
0
0
0
0
373
NB-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
374
NB-ProcessCoverageForMutSig2.0
1
0
0
0
0
375
NB-RPPA_Clustering_CNMF
1
0
0
0
0
376
NB-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
377
NBC-Aggregate_AnalysisFeatures
0
1
0
0
0
378
NBC-Aggregate_Gene_Status
1
0
0
0
0
379
NBC-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
380
NBC-Append_CustomClinical
1
0
0
0
0
381
NBC-CoMut2.0
1
0
0
0
0
382
NBC-CoMut2CV
1
0
0
0
0
383
NBC-CoMutCV
1
0
0
0
0
384
NBC-CopyNumber_Clustering_CNMF
1
0
0
0
0
385
NBC-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
386
NBC-CopyNumber_Gistic2
0
1
0
0
0
387
NBC-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
388
NBC-CopyNumberLowPass_Gistic2
1
0
0
0
0
389
NBC-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
390
NBC-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
391
NBC-Correlate_Clinical_vs_Methylation
1
0
0
0
0
392
NBC-Correlate_Clinical_vs_miR
1
0
0
0
0
393
NBC-Correlate_Clinical_vs_miRseq
1
0
0
0
0
394
NBC-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
395
NBC-Correlate_Clinical_vs_mRNA
1
0
0
0
0
396
NBC-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
397
NBC-Correlate_Clinical_vs_Mutation
1
0
0
0
0
398
NBC-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
399
NBC-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
400
NBC-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
401
NBC-Correlate_Clinical_vs_RPPA
1
0
0
0
0
402
NBC-Correlate_CopyNumber_vs_miR
1
0
0
0
0
403
NBC-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
404
NBC-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
405
NBC-Correlate_Methylation_vs_mRNA
1
0
0
0
0
406
NBC-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
407
NBC-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
408
NBC-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
409
NBC-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
410
NBC-GenerateStickFigures2.0
1
0
0
0
0
411
NBC-GenerateStickFigures2CV
1
0
0
0
0
412
NBC-GenerateStickFiguresCV
1
0
0
0
0
413
NBC-iClusterPlus
1
0
0
0
0
414
NBC-LegoPlotter2.0
1
0
0
0
0
415
NBC-LegoPlotter2CV
1
0
0
0
0
416
NBC-LegoPlotterCV
1
0
0
0
0
417
NBC-Methylation_Clustering_CNMF
1
0
0
0
0
418
NBC-miR_Clustering_CNMF
1
0
0
0
0
419
NBC-miR_Clustering_Consensus_Plus
1
0
0
0
0
420
NBC-miR_FindDirectTargets
1
0
0
0
0
421
NBC-miRseq_Clustering_CNMF
1
0
0
0
0
422
NBC-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
423
NBC-miRseq_FindDirectTargets
1
0
0
0
0
424
NBC-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
425
NBC-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
426
NBC-mRNA_Clustering_CNMF
1
0
0
0
0
427
NBC-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
428
NBC-mRNAseq_Clustering_CNMF
1
0
0
0
0
429
NBC-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
430
NBC-Mutation_APOBEC
1
0
0
0
0
431
NBC-Mutation_Assessor
1
0
0
0
0
432
NBC-Mutation_CHASM
1
0
0
0
0
433
NBC-Mutation_CoOccurrence
1
0
0
0
0
434
NBC-Mutation_CoOccurrence_Custom
1
0
0
0
0
435
NBC-MutSigNozzleReport2.0
1
0
0
0
0
436
NBC-MutSigNozzleReport2CV
1
0
0
0
0
437
NBC-MutSigNozzleReportCV
1
0
0
0
0
438
NBC-MutSigPreprocess2.0
1
0
0
0
0
439
NBC-MutSigRun2.0
1
0
0
0
0
440
NBC-MutSigRun2CV
1
0
0
0
0
441
NBC-MutSigRunCV
1
0
0
0
0
442
NBC-Paradigm_mRNA
1
0
0
0
0
443
NBC-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
444
NBC-Paradigm_Prepare_mRNA
1
0
0
0
0
445
NBC-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
446
NBC-Paradigm_Prepare_RNASeq
1
0
0
0
0
447
NBC-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
448
NBC-Paradigm_Preprocess_mRNA
1
0
0
0
0
449
NBC-ParadigmPreprocess_mRNA
1
0
0
0
0
450
NBC-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
451
NBC-Paradigm_Preprocess_RNASeq
1
0
0
0
0
452
NBC-ParadigmPreprocess_RNASeq
1
0
0
0
0
453
NBC-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
454
NBC-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
455
NBC-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
456
NBC-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
457
NBC-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
458
NBC-Paradigm_RNASeq
1
0
0
0
0
459
NBC-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
460
NBC-Pathway_FindEnrichedGenes
1
0
0
0
0
461
NBC-Pathway_GSEA_mRNAseq
1
0
0
0
0
462
NBC-Pathway_Hotnet
1
0
0
0
0
463
NBC-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
464
NBC-Pathway_Paradigm_mRNA
1
0
0
0
0
465
NBC-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
466
NBC-Pathway_Paradigm_RNASeq
1
0
0
0
0
467
NBC-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
468
NBC-ProcessCoverageForMutSig2.0
1
0
0
0
0
469
NBC-RPPA_Clustering_CNMF
1
0
0
0
0
470
NBC-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
471
Aggregate_AnalysisFeatures
0
0
0
1
0
472
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
473
CopyNumber_Clustering_CNMF
0
0
0
1
0
474
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
475
CopyNumber_Gistic2
0
0
0
1
0
476
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
477
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
478
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
479
Correlate_Clinical_vs_Methylation
1
0
0
0
0
480
Correlate_Clinical_vs_miR
0
1
0
0
0
481
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
482
Correlate_Clinical_vs_mRNA
0
0
0
1
0
483
Correlate_Clinical_vs_Mutation
1
0
0
0
0
484
Correlate_CopyNumber_vs_miR
0
0
0
1
0
485
Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
486
Correlate_Methylation_vs_mRNA
1
0
0
0
0
487
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
488
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
489
Methylation_Clustering_CNMF
1
0
0
0
0
490
Methylation_Preprocess
1
0
0
0
0
491
miR_FindDirectTargets
0
0
0
1
0
492
miR_Mature_Clustering_CNMF
0
0
0
1
0
493
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
494
miR_Mature_Preprocess
0
0
0
1
0
495
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
496
mRNA_lincRNA_CNMF
0
0
0
1
0
497
mRNA_Preprocess
0
0
0
1
0
498
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
499
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
500
Mutation_APOBEC
0
1
0
0
0
501
Mutation_CoOccurrence
0
0
0
0
1
502
Mutation_Signature
0
1
0
0
0
503
Pathway_GSEA_mRNA
0
0
0
1
0
504
Aggregate_AnalysisFeatures
0
0
0
1
0
505
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
506
CopyNumber_Clustering_CNMF
0
0
0
1
0
507
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
508
CopyNumber_Gistic2
0
0
0
1
0
509
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
510
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
511
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
512
Correlate_Clinical_vs_Methylation
1
0
0
0
0
513
Correlate_Clinical_vs_miR
0
1
0
0
0
514
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
515
Correlate_Clinical_vs_mRNA
0
0
0
1
0
516
Correlate_Clinical_vs_Mutation
1
0
0
0
0
517
Correlate_CopyNumber_vs_miR
0
0
0
1
0
518
Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
519
Correlate_Methylation_vs_mRNA
1
0
0
0
0
520
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
521
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
522
Methylation_Clustering_CNMF
1
0
0
0
0
523
Methylation_Preprocess
1
0
0
0
0
524
miR_FindDirectTargets
0
0
0
1
0
525
miR_Mature_Clustering_CNMF
0
0
0
1
0
526
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
527
miR_Mature_Preprocess
0
0
0
1
0
528
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
529
mRNA_lincRNA_CNMF
0
0
0
1
0
530
mRNA_Preprocess
0
0
0
1
0
531
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
532
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
533
Mutation_APOBEC
0
1
0
0
0
534
Mutation_CoOccurrence
0
0
0
0
1
535
Mutation_Signature
0
1
0
0
0
536
Pathway_GSEA_mRNA
0
0
0
1
0
537
Aggregate_AnalysisFeatures
0
1
0
0
0
538
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
539
CopyNumber_Clustering_CNMF
1
0
0
0
0
540
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
541
CopyNumber_Gistic2
0
0
0
0
1
542
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
543
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
544
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
545
Correlate_Clinical_vs_Methylation
1
0
0
0
0
546
Correlate_Clinical_vs_miR
1
0
0
0
0
547
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
548
Correlate_Clinical_vs_mRNA
0
0
0
0
1
549
Correlate_Clinical_vs_Mutation
1
0
0
0
0
550
Correlate_CopyNumber_vs_miR
1
0
0
0
0
551
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
552
Correlate_Methylation_vs_mRNA
1
0
0
0
0
553
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
554
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
555
Methylation_Clustering_CNMF
1
0
0
0
0
556
Methylation_Preprocess
1
0
0
0
0
557
miR_FindDirectTargets
1
0
0
0
0
558
miR_Mature_Clustering_CNMF
1
0
0
0
0
559
miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
560
miR_Mature_Preprocess
0
0
0
1
0
561
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
562
mRNA_lincRNA_CNMF
0
0
0
0
1
563
mRNA_Preprocess
0
0
0
1
0
564
mRNA_protein_coding_Clustering_CNMF
0
0
0
0
1
565
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
0
1
566
Mutation_APOBEC
1
0
0
0
0
567
Mutation_CoOccurrence
1
0
0
0
0
568
Mutation_Signature
1
0
0
0
0
569
Pathway_GSEA_mRNA
1
0
0
0
0
570
Aggregate_AnalysisFeatures
0
1
0
0
0
571
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
572
CopyNumber_Clustering_CNMF
1
0
0
0
0
573
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
574
CopyNumber_Gistic2
0
0
0
0
1
575
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
576
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
577
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
578
Correlate_Clinical_vs_Methylation
1
0
0
0
0
579
Correlate_Clinical_vs_miR
1
0
0
0
0
580
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
581
Correlate_Clinical_vs_mRNA
1
0
0
0
0
582
Correlate_Clinical_vs_Mutation
1
0
0
0
0
583
Correlate_CopyNumber_vs_miR
1
0
0
0
0
584
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
585
Correlate_Methylation_vs_mRNA
1
0
0
0
0
586
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
587
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
588
Methylation_Clustering_CNMF
1
0
0
0
0
589
Methylation_Preprocess
1
0
0
0
0
590
miR_FindDirectTargets
1
0
0
0
0
591
miR_Mature_Clustering_CNMF
1
0
0
0
0
592
miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
593
miR_Mature_Preprocess
1
0
0
0
0
594
mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
595
mRNA_lincRNA_CNMF
1
0
0
0
0
596
mRNA_Preprocess
1
0
0
0
0
597
mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
598
mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
599
Mutation_APOBEC
1
0
0
0
0
600
Mutation_CoOccurrence
1
0
0
0
0
601
Mutation_Signature
1
0
0
0
0
602
Pathway_GSEA_mRNA
1
0
0
0
0
603
Aggregate_AnalysisFeatures
0
1
0
0
0
604
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
605
CopyNumber_Clustering_CNMF
1
0
0
0
0
606
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
607
CopyNumber_Gistic2
0
0
0
0
1
608
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
609
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
610
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
611
Correlate_Clinical_vs_Methylation
1
0
0
0
0
612
Correlate_Clinical_vs_miR
1
0
0
0
0
613
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
614
Correlate_Clinical_vs_mRNA
1
0
0
0
0
615
Correlate_Clinical_vs_Mutation
1
0
0
0
0
616
Correlate_CopyNumber_vs_miR
1
0
0
0
0
617
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
618
Correlate_Methylation_vs_mRNA
1
0
0
0
0
619
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
620
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
621
Methylation_Clustering_CNMF
1
0
0
0
0
622
Methylation_Preprocess
1
0
0
0
0
623
miR_FindDirectTargets
1
0
0
0
0
624
miR_Mature_Clustering_CNMF
1
0
0
0
0
625
miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
626
miR_Mature_Preprocess
1
0
0
0
0
627
mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
628
mRNA_lincRNA_CNMF
1
0
0
0
0
629
mRNA_Preprocess
1
0
0
0
0
630
mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
631
mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
632
Mutation_APOBEC
1
0
0
0
0
633
Mutation_CoOccurrence
1
0
0
0
0
634
Mutation_Signature
1
0
0
0
0
635
Pathway_GSEA_mRNA
1
0
0
0
0
Total
508
62
0
55
10
This table generated on Thu Jan 26 11:04:28 2017