| Pipeline | NotRunnable | Runnable | InProcess | Successful | Unsuccessful |
|---|
| 1 | Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
| 2 | Aggregate_Gene_Status | 1 | 0 | 0 | 0 | 0 |
| 3 | Aggregate_Molecular_Subtype_Clusters | 0 | 1 | 0 | 0 | 0 |
| 4 | Append_CustomClinical | 0 | 1 | 0 | 0 | 0 |
| 5 | CoMut2.0 | 1 | 0 | 0 | 0 | 0 |
| 6 | CoMut2CV | 1 | 0 | 0 | 0 | 0 |
| 7 | CoMutCV | 1 | 0 | 0 | 0 | 0 |
| 8 | CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 9 | CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
| 10 | CopyNumber_Gistic2 | 0 | 1 | 0 | 0 | 0 |
| 11 | CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
| 12 | CopyNumberLowPass_Gistic2 | 1 | 0 | 0 | 0 | 0 |
| 13 | Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 14 | Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 15 | Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 16 | Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 17 | Correlate_Clinical_vs_miRseq | 1 | 0 | 0 | 0 | 0 |
| 18 | Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
| 19 | Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 20 | Correlate_Clinical_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 21 | Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 22 | Correlate_Clinical_vs_Mutation_APOBEC_Categorical | 1 | 0 | 0 | 0 | 0 |
| 23 | Correlate_Clinical_vs_Mutation_APOBEC_Continuous | 1 | 0 | 0 | 0 | 0 |
| 24 | Correlate_Clinical_vs_MutationRate | 1 | 0 | 0 | 0 | 0 |
| 25 | Correlate_Clinical_vs_RPPA | 1 | 0 | 0 | 0 | 0 |
| 26 | Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 27 | Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 28 | Correlate_CopyNumber_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 29 | Correlate_Methylation_vs_mRNA | 0 | 1 | 0 | 0 | 0 |
| 30 | Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 31 | Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 32 | Correlate_molecularSubtype_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 33 | Correlate_mRNAseq_vs_Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 34 | GenerateStickFigures2.0 | 1 | 0 | 0 | 0 | 0 |
| 35 | GenerateStickFigures2CV | 1 | 0 | 0 | 0 | 0 |
| 36 | GenerateStickFiguresCV | 1 | 0 | 0 | 0 | 0 |
| 37 | iClusterPlus | 1 | 0 | 0 | 0 | 0 |
| 38 | LegoPlotter2.0 | 1 | 0 | 0 | 0 | 0 |
| 39 | LegoPlotter2CV | 1 | 0 | 0 | 0 | 0 |
| 40 | LegoPlotterCV | 1 | 0 | 0 | 0 | 0 |
| 41 | Methylation_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
| 42 | miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 43 | miR_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 44 | miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 45 | miRseq_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
| 46 | miRseq_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
| 47 | miRseq_FindDirectTargets | 0 | 1 | 0 | 0 | 0 |
| 48 | miRseq_Mature_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
| 49 | miRseq_Mature_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
| 50 | mRNA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 51 | mRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 52 | mRNAseq_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
| 53 | mRNAseq_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 54 | Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 55 | Mutation_Assessor | 1 | 0 | 0 | 0 | 0 |
| 56 | Mutation_CHASM | 1 | 0 | 0 | 0 | 0 |
| 57 | Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 58 | Mutation_CoOccurrence_Custom | 1 | 0 | 0 | 0 | 0 |
| 59 | MutSigNozzleReport2.0 | 1 | 0 | 0 | 0 | 0 |
| 60 | MutSigNozzleReport2CV | 1 | 0 | 0 | 0 | 0 |
| 61 | MutSigNozzleReportCV | 1 | 0 | 0 | 0 | 0 |
| 62 | MutSigPreprocess2.0 | 1 | 0 | 0 | 0 | 0 |
| 63 | MutSigRun2.0 | 1 | 0 | 0 | 0 | 0 |
| 64 | MutSigRun2CV | 1 | 0 | 0 | 0 | 0 |
| 65 | MutSigRunCV | 1 | 0 | 0 | 0 | 0 |
| 66 | Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 67 | Paradigm_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 68 | Paradigm_Prepare_mRNA | 1 | 0 | 0 | 0 | 0 |
| 69 | Paradigm_Prepare_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 70 | Paradigm_Prepare_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 71 | Paradigm_Prepare_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 72 | Paradigm_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 73 | ParadigmPreprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 74 | Paradigm_Preprocess_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 75 | ParadigmPreprocess_RNASeq | 0 | 1 | 0 | 0 | 0 |
| 76 | Paradigm_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 77 | Paradigm_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 78 | Paradigm_Report_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 79 | Paradigm_Report_Preprocess_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 80 | Paradigm_Report_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 81 | Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 82 | Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 83 | Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 84 | Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
| 85 | Pathway_GSEA_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 86 | Pathway_Hotnet | 1 | 0 | 0 | 0 | 0 |
| 87 | Pathway_Overlaps_MSigDB_MutSig2CV | 1 | 0 | 0 | 0 | 0 |
| 88 | Pathway_Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 89 | Pathway_Paradigm_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 90 | Pathway_Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 91 | Pathway_Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 92 | ProcessCoverageForMutSig2.0 | 1 | 0 | 0 | 0 | 0 |
| 93 | RPPA_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
| 94 | RPPA_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
| 95 | TP-Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
| 96 | TP-Aggregate_Gene_Status | 1 | 0 | 0 | 0 | 0 |
| 97 | TP-Aggregate_Molecular_Subtype_Clusters | 0 | 1 | 0 | 0 | 0 |
| 98 | TP-Append_CustomClinical | 0 | 1 | 0 | 0 | 0 |
| 99 | TP-CoMut2.0 | 1 | 0 | 0 | 0 | 0 |
| 100 | TP-CoMut2CV | 1 | 0 | 0 | 0 | 0 |
| 101 | TP-CoMutCV | 1 | 0 | 0 | 0 | 0 |
| 102 | TP-CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 103 | TP-CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
| 104 | TP-CopyNumber_Gistic2 | 0 | 1 | 0 | 0 | 0 |
| 105 | TP-CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
| 106 | TP-CopyNumberLowPass_Gistic2 | 1 | 0 | 0 | 0 | 0 |
| 107 | TP-Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 108 | TP-Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 109 | TP-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 110 | TP-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 111 | TP-Correlate_Clinical_vs_miRseq | 1 | 0 | 0 | 0 | 0 |
| 112 | TP-Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
| 113 | TP-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 114 | TP-Correlate_Clinical_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 115 | TP-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 116 | TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | 1 | 0 | 0 | 0 | 0 |
| 117 | TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | 1 | 0 | 0 | 0 | 0 |
| 118 | TP-Correlate_Clinical_vs_MutationRate | 1 | 0 | 0 | 0 | 0 |
| 119 | TP-Correlate_Clinical_vs_RPPA | 1 | 0 | 0 | 0 | 0 |
| 120 | TP-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 121 | TP-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 122 | TP-Correlate_CopyNumber_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 123 | TP-Correlate_Methylation_vs_mRNA | 0 | 1 | 0 | 0 | 0 |
| 124 | TP-Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 125 | TP-Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 126 | TP-Correlate_molecularSubtype_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 127 | TP-Correlate_mRNAseq_vs_Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 128 | TP-GenerateStickFigures2.0 | 1 | 0 | 0 | 0 | 0 |
| 129 | TP-GenerateStickFigures2CV | 1 | 0 | 0 | 0 | 0 |
| 130 | TP-GenerateStickFiguresCV | 1 | 0 | 0 | 0 | 0 |
| 131 | TP-iClusterPlus | 1 | 0 | 0 | 0 | 0 |
| 132 | TP-LegoPlotter2.0 | 1 | 0 | 0 | 0 | 0 |
| 133 | TP-LegoPlotter2CV | 1 | 0 | 0 | 0 | 0 |
| 134 | TP-LegoPlotterCV | 1 | 0 | 0 | 0 | 0 |
| 135 | TP-Methylation_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
| 136 | TP-miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 137 | TP-miR_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 138 | TP-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 139 | TP-miRseq_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
| 140 | TP-miRseq_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
| 141 | TP-miRseq_FindDirectTargets | 0 | 1 | 0 | 0 | 0 |
| 142 | TP-miRseq_Mature_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
| 143 | TP-miRseq_Mature_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
| 144 | TP-mRNA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 145 | TP-mRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 146 | TP-mRNAseq_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
| 147 | TP-mRNAseq_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 148 | TP-Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 149 | TP-Mutation_Assessor | 1 | 0 | 0 | 0 | 0 |
| 150 | TP-Mutation_CHASM | 1 | 0 | 0 | 0 | 0 |
| 151 | TP-Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 152 | TP-Mutation_CoOccurrence_Custom | 1 | 0 | 0 | 0 | 0 |
| 153 | TP-MutSigNozzleReport2.0 | 1 | 0 | 0 | 0 | 0 |
| 154 | TP-MutSigNozzleReport2CV | 1 | 0 | 0 | 0 | 0 |
| 155 | TP-MutSigNozzleReportCV | 1 | 0 | 0 | 0 | 0 |
| 156 | TP-MutSigPreprocess2.0 | 0 | 1 | 0 | 0 | 0 |
| 157 | TP-MutSigRun2.0 | 1 | 0 | 0 | 0 | 0 |
| 158 | TP-MutSigRun2CV | 0 | 1 | 0 | 0 | 0 |
| 159 | TP-MutSigRunCV | 0 | 1 | 0 | 0 | 0 |
| 160 | TP-Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 161 | TP-Paradigm_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 162 | TP-Paradigm_Prepare_mRNA | 1 | 0 | 0 | 0 | 0 |
| 163 | TP-Paradigm_Prepare_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 164 | TP-Paradigm_Prepare_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 165 | TP-Paradigm_Prepare_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 166 | TP-Paradigm_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 167 | TP-ParadigmPreprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 168 | TP-Paradigm_Preprocess_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 169 | TP-ParadigmPreprocess_RNASeq | 0 | 1 | 0 | 0 | 0 |
| 170 | TP-Paradigm_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 171 | TP-Paradigm_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 172 | TP-Paradigm_Report_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 173 | TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 174 | TP-Paradigm_Report_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 175 | TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 176 | TP-Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 177 | TP-Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 178 | TP-Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
| 179 | TP-Pathway_GSEA_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 180 | TP-Pathway_Hotnet | 1 | 0 | 0 | 0 | 0 |
| 181 | TP-Pathway_Overlaps_MSigDB_MutSig2CV | 1 | 0 | 0 | 0 | 0 |
| 182 | TP-Pathway_Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 183 | TP-Pathway_Paradigm_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 184 | TP-Pathway_Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 185 | TP-Pathway_Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 186 | TP-ProcessCoverageForMutSig2.0 | 1 | 0 | 0 | 0 | 0 |
| 187 | TP-RPPA_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
| 188 | TP-RPPA_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
| 189 | NT-Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
| 190 | NT-Aggregate_Gene_Status | 1 | 0 | 0 | 0 | 0 |
| 191 | NT-Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
| 192 | NT-Append_CustomClinical | 0 | 1 | 0 | 0 | 0 |
| 193 | NT-CoMut2.0 | 1 | 0 | 0 | 0 | 0 |
| 194 | NT-CoMut2CV | 1 | 0 | 0 | 0 | 0 |
| 195 | NT-CoMutCV | 1 | 0 | 0 | 0 | 0 |
| 196 | NT-CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 197 | NT-CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
| 198 | NT-CopyNumber_Gistic2 | 0 | 1 | 0 | 0 | 0 |
| 199 | NT-CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
| 200 | NT-CopyNumberLowPass_Gistic2 | 1 | 0 | 0 | 0 | 0 |
| 201 | NT-Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 202 | NT-Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 203 | NT-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 204 | NT-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 205 | NT-Correlate_Clinical_vs_miRseq | 1 | 0 | 0 | 0 | 0 |
| 206 | NT-Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
| 207 | NT-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 208 | NT-Correlate_Clinical_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 209 | NT-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 210 | NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | 1 | 0 | 0 | 0 | 0 |
| 211 | NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | 1 | 0 | 0 | 0 | 0 |
| 212 | NT-Correlate_Clinical_vs_MutationRate | 1 | 0 | 0 | 0 | 0 |
| 213 | NT-Correlate_Clinical_vs_RPPA | 1 | 0 | 0 | 0 | 0 |
| 214 | NT-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 215 | NT-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 216 | NT-Correlate_CopyNumber_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 217 | NT-Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 218 | NT-Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 219 | NT-Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 220 | NT-Correlate_molecularSubtype_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 221 | NT-Correlate_mRNAseq_vs_Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 222 | NT-GenerateStickFigures2.0 | 1 | 0 | 0 | 0 | 0 |
| 223 | NT-GenerateStickFigures2CV | 1 | 0 | 0 | 0 | 0 |
| 224 | NT-GenerateStickFiguresCV | 1 | 0 | 0 | 0 | 0 |
| 225 | NT-iClusterPlus | 1 | 0 | 0 | 0 | 0 |
| 226 | NT-LegoPlotter2.0 | 1 | 0 | 0 | 0 | 0 |
| 227 | NT-LegoPlotter2CV | 1 | 0 | 0 | 0 | 0 |
| 228 | NT-LegoPlotterCV | 1 | 0 | 0 | 0 | 0 |
| 229 | NT-Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 230 | NT-miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 231 | NT-miR_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 232 | NT-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 233 | NT-miRseq_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 234 | NT-miRseq_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 235 | NT-miRseq_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 236 | NT-miRseq_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 237 | NT-miRseq_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 238 | NT-mRNA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 239 | NT-mRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 240 | NT-mRNAseq_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 241 | NT-mRNAseq_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 242 | NT-Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 243 | NT-Mutation_Assessor | 1 | 0 | 0 | 0 | 0 |
| 244 | NT-Mutation_CHASM | 1 | 0 | 0 | 0 | 0 |
| 245 | NT-Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 246 | NT-Mutation_CoOccurrence_Custom | 1 | 0 | 0 | 0 | 0 |
| 247 | NT-MutSigNozzleReport2.0 | 1 | 0 | 0 | 0 | 0 |
| 248 | NT-MutSigNozzleReport2CV | 1 | 0 | 0 | 0 | 0 |
| 249 | NT-MutSigNozzleReportCV | 1 | 0 | 0 | 0 | 0 |
| 250 | NT-MutSigPreprocess2.0 | 1 | 0 | 0 | 0 | 0 |
| 251 | NT-MutSigRun2.0 | 1 | 0 | 0 | 0 | 0 |
| 252 | NT-MutSigRun2CV | 1 | 0 | 0 | 0 | 0 |
| 253 | NT-MutSigRunCV | 1 | 0 | 0 | 0 | 0 |
| 254 | NT-Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 255 | NT-Paradigm_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 256 | NT-Paradigm_Prepare_mRNA | 1 | 0 | 0 | 0 | 0 |
| 257 | NT-Paradigm_Prepare_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 258 | NT-Paradigm_Prepare_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 259 | NT-Paradigm_Prepare_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 260 | NT-Paradigm_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 261 | NT-ParadigmPreprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 262 | NT-Paradigm_Preprocess_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 263 | NT-Paradigm_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 264 | NT-ParadigmPreprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 265 | NT-Paradigm_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 266 | NT-Paradigm_Report_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 267 | NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 268 | NT-Paradigm_Report_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 269 | NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 270 | NT-Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 271 | NT-Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 272 | NT-Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
| 273 | NT-Pathway_GSEA_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 274 | NT-Pathway_Hotnet | 1 | 0 | 0 | 0 | 0 |
| 275 | NT-Pathway_Overlaps_MSigDB_MutSig2CV | 1 | 0 | 0 | 0 | 0 |
| 276 | NT-Pathway_Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 277 | NT-Pathway_Paradigm_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 278 | NT-Pathway_Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 279 | NT-Pathway_Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 280 | NT-ProcessCoverageForMutSig2.0 | 1 | 0 | 0 | 0 | 0 |
| 281 | NT-RPPA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 282 | NT-RPPA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 283 | NB-Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
| 284 | NB-Aggregate_Gene_Status | 1 | 0 | 0 | 0 | 0 |
| 285 | NB-Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
| 286 | NB-Append_CustomClinical | 0 | 1 | 0 | 0 | 0 |
| 287 | NB-CoMut2.0 | 1 | 0 | 0 | 0 | 0 |
| 288 | NB-CoMut2CV | 1 | 0 | 0 | 0 | 0 |
| 289 | NB-CoMutCV | 1 | 0 | 0 | 0 | 0 |
| 290 | NB-CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 291 | NB-CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
| 292 | NB-CopyNumber_Gistic2 | 0 | 1 | 0 | 0 | 0 |
| 293 | NB-CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
| 294 | NB-CopyNumberLowPass_Gistic2 | 1 | 0 | 0 | 0 | 0 |
| 295 | NB-Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 296 | NB-Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 297 | NB-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 298 | NB-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 299 | NB-Correlate_Clinical_vs_miRseq | 1 | 0 | 0 | 0 | 0 |
| 300 | NB-Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
| 301 | NB-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 302 | NB-Correlate_Clinical_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 303 | NB-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 304 | NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | 1 | 0 | 0 | 0 | 0 |
| 305 | NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | 1 | 0 | 0 | 0 | 0 |
| 306 | NB-Correlate_Clinical_vs_MutationRate | 1 | 0 | 0 | 0 | 0 |
| 307 | NB-Correlate_Clinical_vs_RPPA | 1 | 0 | 0 | 0 | 0 |
| 308 | NB-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 309 | NB-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 310 | NB-Correlate_CopyNumber_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 311 | NB-Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 312 | NB-Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 313 | NB-Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 314 | NB-Correlate_molecularSubtype_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 315 | NB-Correlate_mRNAseq_vs_Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 316 | NB-GenerateStickFigures2.0 | 1 | 0 | 0 | 0 | 0 |
| 317 | NB-GenerateStickFigures2CV | 1 | 0 | 0 | 0 | 0 |
| 318 | NB-GenerateStickFiguresCV | 1 | 0 | 0 | 0 | 0 |
| 319 | NB-iClusterPlus | 1 | 0 | 0 | 0 | 0 |
| 320 | NB-LegoPlotter2.0 | 1 | 0 | 0 | 0 | 0 |
| 321 | NB-LegoPlotter2CV | 1 | 0 | 0 | 0 | 0 |
| 322 | NB-LegoPlotterCV | 1 | 0 | 0 | 0 | 0 |
| 323 | NB-Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 324 | NB-miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 325 | NB-miR_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 326 | NB-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 327 | NB-miRseq_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 328 | NB-miRseq_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 329 | NB-miRseq_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 330 | NB-miRseq_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 331 | NB-miRseq_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 332 | NB-mRNA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 333 | NB-mRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 334 | NB-mRNAseq_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 335 | NB-mRNAseq_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 336 | NB-Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 337 | NB-Mutation_Assessor | 1 | 0 | 0 | 0 | 0 |
| 338 | NB-Mutation_CHASM | 1 | 0 | 0 | 0 | 0 |
| 339 | NB-Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 340 | NB-Mutation_CoOccurrence_Custom | 1 | 0 | 0 | 0 | 0 |
| 341 | NB-MutSigNozzleReport2.0 | 1 | 0 | 0 | 0 | 0 |
| 342 | NB-MutSigNozzleReport2CV | 1 | 0 | 0 | 0 | 0 |
| 343 | NB-MutSigNozzleReportCV | 1 | 0 | 0 | 0 | 0 |
| 344 | NB-MutSigPreprocess2.0 | 1 | 0 | 0 | 0 | 0 |
| 345 | NB-MutSigRun2.0 | 1 | 0 | 0 | 0 | 0 |
| 346 | NB-MutSigRun2CV | 1 | 0 | 0 | 0 | 0 |
| 347 | NB-MutSigRunCV | 1 | 0 | 0 | 0 | 0 |
| 348 | NB-Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 349 | NB-Paradigm_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 350 | NB-Paradigm_Prepare_mRNA | 1 | 0 | 0 | 0 | 0 |
| 351 | NB-Paradigm_Prepare_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 352 | NB-Paradigm_Prepare_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 353 | NB-Paradigm_Prepare_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 354 | NB-Paradigm_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 355 | NB-ParadigmPreprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 356 | NB-Paradigm_Preprocess_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 357 | NB-Paradigm_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 358 | NB-ParadigmPreprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 359 | NB-Paradigm_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 360 | NB-Paradigm_Report_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 361 | NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 362 | NB-Paradigm_Report_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 363 | NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 364 | NB-Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 365 | NB-Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 366 | NB-Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
| 367 | NB-Pathway_GSEA_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 368 | NB-Pathway_Hotnet | 1 | 0 | 0 | 0 | 0 |
| 369 | NB-Pathway_Overlaps_MSigDB_MutSig2CV | 1 | 0 | 0 | 0 | 0 |
| 370 | NB-Pathway_Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 371 | NB-Pathway_Paradigm_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 372 | NB-Pathway_Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 373 | NB-Pathway_Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 374 | NB-ProcessCoverageForMutSig2.0 | 1 | 0 | 0 | 0 | 0 |
| 375 | NB-RPPA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 376 | NB-RPPA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 377 | Aggregate_AnalysisFeatures | 0 | 0 | 0 | 1 | 0 |
| 378 | Aggregate_Molecular_Subtype_Clusters | 0 | 0 | 0 | 1 | 0 |
| 379 | CopyNumber_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 380 | CopyNumber_Clustering_CNMF_thresholded | 0 | 0 | 0 | 1 | 0 |
| 381 | CopyNumber_Gistic2 | 0 | 0 | 0 | 1 | 0 |
| 382 | CopyNumber_Gistic2_Postprocess_Focal | 0 | 0 | 0 | 1 | 0 |
| 383 | Correlate_Clinical_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 384 | Correlate_Clinical_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 385 | Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 386 | Correlate_Clinical_vs_miR | 0 | 1 | 0 | 0 | 0 |
| 387 | Correlate_Clinical_vs_Molecular_Subtypes | 0 | 0 | 0 | 1 | 0 |
| 388 | Correlate_Clinical_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 389 | Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 390 | Correlate_CopyNumber_vs_miR | 0 | 0 | 0 | 1 | 0 |
| 391 | Correlate_CopyNumber_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 392 | Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 393 | Correlate_molecularSubtype_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 394 | Correlate_molecularSubtype_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 395 | Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 396 | Methylation_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 397 | miR_FindDirectTargets | 0 | 0 | 0 | 1 | 0 |
| 398 | miR_Mature_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 399 | miR_Mature_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 400 | miR_Mature_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 401 | mRNA_lincRNA_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 402 | mRNA_lincRNA_CNMF | 0 | 0 | 0 | 1 | 0 |
| 403 | mRNA_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 404 | mRNA_protein_coding_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 405 | mRNA_protein_coding_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 406 | Mutation_APOBEC | 0 | 1 | 0 | 0 | 0 |
| 407 | Mutation_CoOccurrence | 0 | 0 | 0 | 1 | 0 |
| 408 | Mutation_Signature | 0 | 1 | 0 | 0 | 0 |
| 409 | Pathway_GSEA_mRNA | 0 | 0 | 0 | 1 | 0 |
| 410 | Aggregate_AnalysisFeatures | 0 | 0 | 0 | 1 | 0 |
| 411 | Aggregate_Molecular_Subtype_Clusters | 0 | 0 | 0 | 1 | 0 |
| 412 | CopyNumber_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 413 | CopyNumber_Clustering_CNMF_thresholded | 0 | 0 | 0 | 1 | 0 |
| 414 | CopyNumber_Gistic2 | 0 | 0 | 0 | 1 | 0 |
| 415 | CopyNumber_Gistic2_Postprocess_Focal | 0 | 0 | 0 | 1 | 0 |
| 416 | Correlate_Clinical_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 417 | Correlate_Clinical_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 418 | Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 419 | Correlate_Clinical_vs_miR | 0 | 1 | 0 | 0 | 0 |
| 420 | Correlate_Clinical_vs_Molecular_Subtypes | 0 | 0 | 0 | 1 | 0 |
| 421 | Correlate_Clinical_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 422 | Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 423 | Correlate_CopyNumber_vs_miR | 0 | 0 | 0 | 1 | 0 |
| 424 | Correlate_CopyNumber_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 425 | Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 426 | Correlate_molecularSubtype_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 427 | Correlate_molecularSubtype_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 428 | Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 429 | Methylation_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 430 | miR_FindDirectTargets | 0 | 0 | 0 | 1 | 0 |
| 431 | miR_Mature_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 432 | miR_Mature_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 433 | miR_Mature_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 434 | mRNA_lincRNA_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 435 | mRNA_lincRNA_CNMF | 0 | 0 | 0 | 1 | 0 |
| 436 | mRNA_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 437 | mRNA_protein_coding_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 438 | mRNA_protein_coding_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 439 | Mutation_APOBEC | 0 | 1 | 0 | 0 | 0 |
| 440 | Mutation_CoOccurrence | 0 | 0 | 0 | 1 | 0 |
| 441 | Mutation_Signature | 0 | 1 | 0 | 0 | 0 |
| 442 | Pathway_GSEA_mRNA | 0 | 0 | 0 | 1 | 0 |
| 443 | Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
| 444 | Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
| 445 | CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 446 | CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
| 447 | CopyNumber_Gistic2 | 0 | 0 | 0 | 0 | 1 |
| 448 | CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
| 449 | Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 450 | Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 451 | Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 452 | Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 453 | Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
| 454 | Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 455 | Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 456 | Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 457 | Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 458 | Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 459 | Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 460 | Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 461 | Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 462 | Methylation_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 463 | miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 464 | miR_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 465 | miR_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 466 | miR_Mature_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 467 | mRNA_lincRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 468 | mRNA_lincRNA_CNMF | 1 | 0 | 0 | 0 | 0 |
| 469 | mRNA_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 470 | mRNA_protein_coding_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 471 | mRNA_protein_coding_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 472 | Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 473 | Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 474 | Mutation_Signature | 1 | 0 | 0 | 0 | 0 |
| 475 | Pathway_GSEA_mRNA | 1 | 0 | 0 | 0 | 0 |
| 476 | Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
| 477 | Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
| 478 | CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 479 | CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
| 480 | CopyNumber_Gistic2 | 0 | 0 | 0 | 0 | 1 |
| 481 | CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
| 482 | Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 483 | Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 484 | Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 485 | Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 486 | Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
| 487 | Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 488 | Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 489 | Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 490 | Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 491 | Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 492 | Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 493 | Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 494 | Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 495 | Methylation_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 496 | miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 497 | miR_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 498 | miR_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 499 | miR_Mature_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 500 | mRNA_lincRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 501 | mRNA_lincRNA_CNMF | 1 | 0 | 0 | 0 | 0 |
| 502 | mRNA_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 503 | mRNA_protein_coding_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 504 | mRNA_protein_coding_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 505 | Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 506 | Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 507 | Mutation_Signature | 1 | 0 | 0 | 0 | 0 |
| 508 | Pathway_GSEA_mRNA | 1 | 0 | 0 | 0 | 0 |
| Total | 407 | 47 | 0 | 52 | 2 |