Broad GDAC Analyses Status
dev Run for Tumor Type: BRCA
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
BRCA
1097
1043
1088
19
1045
526
1091
0
1077
409
976
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Clinical_Pick_Tier1
0
0
0
1
0
2
CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
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0
0
0
0
3
CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
1
0
0
0
0
4
CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
1
0
0
0
0
5
CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
1
0
0
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0
6
CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
1
0
0
0
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7
CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
1
0
0
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8
CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
1
0
0
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9
CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
1
0
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0
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10
CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
1
0
0
0
0
11
CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
1
0
0
0
0
12
Merge_Clinical
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0
0
1
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13
Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
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0
0
0
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14
Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
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0
0
0
0
15
Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
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0
0
0
0
16
Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
0
17
Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
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0
18
Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
1
0
0
0
0
19
Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
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0
0
0
0
20
Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
0
21
Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
0
0
0
1
0
22
Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
1
0
0
0
0
23
Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
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0
0
0
0
24
Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
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0
0
0
0
25
Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
1
0
0
0
0
26
Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
0
0
0
1
0
27
Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
0
0
0
1
0
28
Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
1
0
0
0
0
29
Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
1
0
0
0
0
30
Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
1
0
0
0
0
31
Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
1
0
0
0
0
32
Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
1
0
0
0
0
33
Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
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0
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1
0
34
Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
0
0
0
1
0
35
Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
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0
0
1
0
36
Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
0
0
0
1
0
37
Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
0
0
0
1
0
38
Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
1
0
0
0
0
39
Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
1
0
0
0
0
40
Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
1
0
0
0
0
41
Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
1
0
0
0
0
42
Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
1
0
0
0
0
43
Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
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0
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0
44
Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
1
0
0
0
0
45
Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
1
0
0
0
0
46
Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
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0
0
0
0
47
Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
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0
0
1
0
48
Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
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0
0
1
0
49
Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
0
0
0
1
0
50
Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data
1
0
0
0
0
51
Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data
1
0
0
0
0
52
Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
1
0
0
0
0
53
Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
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0
0
0
54
Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
1
0
0
0
0
55
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
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0
0
1
0
56
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
0
0
0
1
0
57
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
0
0
0
1
0
58
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
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0
0
1
0
59
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
0
0
0
1
0
60
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data
1
0
0
0
0
61
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
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1
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62
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data
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0
63
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data
1
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0
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0
64
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data
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0
0
0
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Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data
1
0
0
0
0
66
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
0
0
0
1
0
67
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
0
0
0
1
0
68
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
0
0
0
1
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69
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
0
0
0
1
0
70
Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data
1
0
0
0
0
71
Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data
1
0
0
0
0
72
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
1
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0
0
0
73
Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data
1
0
0
0
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Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data
1
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0
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75
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data
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0
0
0
76
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data
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0
0
0
0
77
Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
78
Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
79
Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
80
Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data
1
0
0
0
0
81
Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data
1
0
0
0
0
82
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
1
0
0
0
0
83
Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data
1
0
0
0
0
84
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data
1
0
0
0
0
85
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data
1
0
0
0
0
86
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data
1
0
0
0
0
87
Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
88
Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
89
Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
90
Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
91
Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
92
Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
93
Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
94
Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
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0
0
1
0
95
Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
0
0
0
1
0
96
Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
1
0
0
0
0
97
Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
1
0
0
0
0
98
mRNAseq_Preprocess
0
0
0
1
0
99
Mutation_Packager_Calls
0
1
0
0
0
100
Mutation_Packager_Coverage
0
1
0
0
0
101
RPPA_AnnotateWithGene
0
0
0
1
0
102
TP-Clinical_Pick_Tier1
0
0
0
1
0
103
TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
1
0
0
0
0
104
TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
1
0
0
0
0
105
TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
1
0
0
0
0
106
TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
1
0
0
0
0
107
TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
1
0
0
0
0
108
TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
1
0
0
0
0
109
TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
1
0
0
0
0
110
TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
1
0
0
0
0
111
TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
1
0
0
0
0
112
TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
1
0
0
0
0
113
TP-Merge_Clinical
0
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0
1
0
114
TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
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0
0
0
0
115
TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
1
0
0
0
0
116
TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
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0
0
0
0
117
TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
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118
TP-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
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0
0
0
0
119
TP-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
1
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0
0
0
120
TP-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
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0
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0
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121
TP-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
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122
TP-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
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1
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123
TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
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0
0
124
TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
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0
0
125
TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
1
0
0
0
0
126
TP-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
1
0
0
0
0
127
TP-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
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0
0
1
0
128
TP-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
0
0
0
1
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129
TP-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
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130
TP-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
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131
TP-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
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132
TP-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
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133
TP-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
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134
TP-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
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135
TP-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
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136
TP-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
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137
TP-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
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138
TP-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
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139
TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
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140
TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
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TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
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142
TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
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143
TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
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144
TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
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145
TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
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146
TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
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147
TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
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148
TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
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1
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149
TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
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150
TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
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151
TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data
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0
152
TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data
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153
TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
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154
TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
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155
TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
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465
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
0
0
0
1
0
466
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data
1
0
0
0
0
467
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data
1
0
0
0
0
468
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data
1
0
0
0
0
469
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data
1
0
0
0
0
470
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
0
0
0
1
0
471
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
0
0
0
1
0
472
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
0
0
0
1
0
473
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
0
0
0
1
0
474
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data
1
0
0
0
0
475
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data
1
0
0
0
0
476
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
1
0
0
0
0
477
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data
1
0
0
0
0
478
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data
1
0
0
0
0
479
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data
1
0
0
0
0
480
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data
1
0
0
0
0
481
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
482
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
483
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
484
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data
1
0
0
0
0
485
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data
1
0
0
0
0
486
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
1
0
0
0
0
487
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data
1
0
0
0
0
488
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data
1
0
0
0
0
489
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data
1
0
0
0
0
490
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data
1
0
0
0
0
491
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
492
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
493
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
494
NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
495
NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
496
NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
497
NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
498
NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
499
NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
500
NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
1
0
0
0
0
501
NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
1
0
0
0
0
502
NB-mRNAseq_Preprocess
1
0
0
0
0
503
NB-Mutation_Packager_Calls
1
0
0
0
0
504
NB-Mutation_Packager_Coverage
1
0
0
0
0
505
NB-RPPA_AnnotateWithGene
1
0
0
0
0
506
FFPE-Clinical_Pick_Tier1
1
0
0
0
0
507
FFPE-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
1
0
0
0
0
508
FFPE-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
1
0
0
0
0
509
FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
1
0
0
0
0
510
FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
1
0
0
0
0
511
FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
1
0
0
0
0
512
FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
1
0
0
0
0
513
FFPE-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
1
0
0
0
0
514
FFPE-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
1
0
0
0
0
515
FFPE-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
1
0
0
0
0
516
FFPE-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
1
0
0
0
0
517
FFPE-Merge_Clinical
1
0
0
0
0
518
FFPE-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
1
0
0
0
0
519
FFPE-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
1
0
0
0
0
520
FFPE-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
1
0
0
0
0
521
FFPE-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
0
522
FFPE-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
1
0
0
0
0
523
FFPE-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
1
0
0
0
0
524
FFPE-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
1
0
0
0
0
525
FFPE-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
0
526
FFPE-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
0
527
FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
1
0
0
0
0
528
FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
1
0
0
0
0
529
FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
1
0
0
0
0
530
FFPE-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
1
0
0
0
0
531
FFPE-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
1
0
0
0
0
532
FFPE-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
0
0
0
1
0
533
FFPE-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
1
0
0
0
0
534
FFPE-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
1
0
0
0
0
535
FFPE-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
1
0
0
0
0
536
FFPE-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
1
0
0
0
0
537
FFPE-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
1
0
0
0
0
538
FFPE-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
1
0
0
0
0
539
FFPE-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
1
0
0
0
0
540
FFPE-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
0
0
0
1
0
541
FFPE-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
0
0
0
1
0
542
FFPE-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
1
0
0
0
0
543
FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
1
0
0
0
0
544
FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
1
0
0
0
0
545
FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
1
0
0
0
0
546
FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
1
0
0
0
0
547
FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
1
0
0
0
0
548
FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
1
0
0
0
0
549
FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
1
0
0
0
0
550
FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
1
0
0
0
0
551
FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
1
0
0
0
0
552
FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
1
0
0
0
0
553
FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
1
0
0
0
0
554
FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
1
0
0
0
0
555
FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data
1
0
0
0
0
556
FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data
1
0
0
0
0
557
FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
1
0
0
0
0
558
FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
1
0
0
0
0
559
FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
1
0
0
0
0
560
FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
1
0
0
0
0
561
FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
1
0
0
0
0
562
FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
1
0
0
0
0
563
FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
1
0
0
0
0
564
FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
1
0
0
0
0
565
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data
1
0
0
0
0
566
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
0
0
0
1
0
567
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data
1
0
0
0
0
568
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data
1
0
0
0
0
569
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data
1
0
0
0
0
570
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data
1
0
0
0
0
571
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
0
0
0
1
0
572
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
0
0
0
1
0
573
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
0
0
0
1
0
574
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
0
0
0
1
0
575
FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data
1
0
0
0
0
576
FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data
1
0
0
0
0
577
FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
1
0
0
0
0
578
FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data
1
0
0
0
0
579
FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data
1
0
0
0
0
580
FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data
1
0
0
0
0
581
FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data
1
0
0
0
0
582
FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
583
FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
584
FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
585
FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data
1
0
0
0
0
586
FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data
1
0
0
0
0
587
FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
1
0
0
0
0
588
FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data
1
0
0
0
0
589
FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data
1
0
0
0
0
590
FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data
1
0
0
0
0
591
FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data
1
0
0
0
0
592
FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
593
FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
594
FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
595
FFPE-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
596
FFPE-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
597
FFPE-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
598
FFPE-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
599
FFPE-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
600
FFPE-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
601
FFPE-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
1
0
0
0
0
602
FFPE-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
1
0
0
0
0
603
FFPE-mRNAseq_Preprocess
1
0
0
0
0
604
FFPE-Mutation_Packager_Calls
1
0
0
0
0
605
FFPE-Mutation_Packager_Coverage
1
0
0
0
0
606
FFPE-RPPA_AnnotateWithGene
1
0
0
0
0
Total
481
9
0
116
0
This table generated on Wed Feb 18 16:33:54 2015