Broad GDAC Analyses Status
dev Run for Tumor Type: LUAD

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAF
LUAD585483515120569324880513181229

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Clinical_Pick_Tier100010
2CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
3CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
4CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
5CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
6CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
7CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
8CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
9CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
10CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
11CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
12Merge_Clinical00010
13Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
14Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
15Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
16Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
17Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
18Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
19Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
20Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
21Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg00010
22Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
23Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
24Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
25Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
26Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
27Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
28Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
29Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
30Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
31Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
32Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
33Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
34Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
35Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
36Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
37Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data00010
38Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
39Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
40Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
41Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
42Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
43Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
44Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
45Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
46Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
47Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data00010
48Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data00010
49Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data00010
50Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
51Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
52Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
53Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
54Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
55Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data00010
56Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data00010
57Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data00010
58Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data00010
59Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data00010
60Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
61Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
62Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
63Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
64Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
65Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
66Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
67Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
68Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
69Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
70Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
71Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
72Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
73Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
74Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
75Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
76Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
77Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
78Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
79Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
80Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
81Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
82Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
83Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
84Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
85Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
86Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
87Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
88Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
89Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
90Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
91Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
92Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
93Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
94Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data00010
95Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data00010
96Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
97Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
98mRNAseq_Preprocess00010
99Mutation_Packager_Calls01000
100Mutation_Packager_Coverage01000
101RPPA_AnnotateWithGene00010
102TR-Clinical_Pick_Tier100010
103TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
104TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
105TR-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
106TR-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
107TR-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
108TR-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
109TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
110TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
111TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
112TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
113TR-Merge_Clinical00010
114TR-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
115TR-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
116TR-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
117TR-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
118TR-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
119TR-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
120TR-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
121TR-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
122TR-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
123TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
124TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
125TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
126TR-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
127TR-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
128TR-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
129TR-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
130TR-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
131TR-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
132TR-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
133TR-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
134TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
135TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
136TR-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
137TR-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
138TR-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
139TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
140TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
141TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
142TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
143TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
144TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
145TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
146TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
147TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
148TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
149TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
150TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
151TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
152TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
153TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
154TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
155TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
156TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data00010
157TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data00010
158TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data00010
159TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data00010
160TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data00010
161TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
162TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
163TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
164TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
165TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
166TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
167TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
168TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
169TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
170TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
171TR-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
172TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
173TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
174TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
175TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
176TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
177TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
178TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
179TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
180TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
181TR-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
182TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
183TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
184TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
185TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
186TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
187TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
188TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
189TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
190TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
191TR-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
192TR-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
193TR-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
194TR-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
195TR-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
196TR-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
197TR-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
198TR-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
199TR-mRNAseq_Preprocess00010
200TR-Mutation_Packager_Calls10000
201TR-Mutation_Packager_Coverage10000
202TR-RPPA_AnnotateWithGene10000
203TP-Clinical_Pick_Tier100010
204TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
205TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
206TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
207TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
208TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
209TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
210TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
211TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
212TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
213TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
214TP-Merge_Clinical00010
215TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
216TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
217TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
218TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
219TP-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
220TP-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
221TP-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
222TP-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
223TP-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg00010
224TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
225TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
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271TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
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300TP-mRNAseq_Preprocess00010
301TP-Mutation_Packager_Calls01000
302TP-Mutation_Packager_Coverage01000
303TP-RPPA_AnnotateWithGene00010
304NT-Clinical_Pick_Tier100010
305NT-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
306NT-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
307NT-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
308NT-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT01000
309NT-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
310NT-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT01000
311NT-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
312NT-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
313NT-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
314NT-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
315NT-Merge_Clinical00010
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317NT-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
318NT-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
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323NT-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
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333NT-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
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339NT-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
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351NT-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data00010
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361NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data00010
362NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data00010
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364NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
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366NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
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368NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
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370NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
371NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
372NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
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375NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
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381NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
382NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
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395NT-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
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397NT-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
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399NT-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
400NT-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
401NT-mRNAseq_Preprocess00010
402NT-Mutation_Packager_Calls10000
403NT-Mutation_Packager_Coverage10000
404NT-RPPA_AnnotateWithGene10000
405NB-Clinical_Pick_Tier100010
406NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
407NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
408NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
409NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
410NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
411NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
412NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
413NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
414NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
415NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
416NB-Merge_Clinical00010
417NB-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
418NB-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
419NB-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
420NB-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
421NB-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
422NB-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
423NB-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
424NB-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
425NB-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg00010
426NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
427NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
428NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
429NB-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
430NB-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
431NB-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
432NB-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
433NB-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
434NB-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
435NB-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
436NB-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
437NB-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
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439NB-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
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441NB-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
442NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
443NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
444NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
445NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
446NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
447NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
448NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
449NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
450NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
451NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
452NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
453NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
454NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
455NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
456NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
457NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
458NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
459NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
460NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
461NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
462NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
463NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
464NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
465NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
466NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
467NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
468NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
469NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
470NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
471NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
472NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
473NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
474NB-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
475NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
476NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
477NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
478NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
479NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
480NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
481NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
482NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
483NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
484NB-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
485NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
486NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
487NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
488NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
489NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
490NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
491NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
492NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
493NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
494NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
495NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
496NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
497NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
498NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
499NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
500NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
501NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
502NB-mRNAseq_Preprocess10000
503NB-Mutation_Packager_Calls10000
504NB-Mutation_Packager_Coverage10000
505NB-RPPA_AnnotateWithGene10000
506FFPE-Clinical_Pick_Tier110000
507FFPE-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
508FFPE-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
509FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
510FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
511FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
512FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
513FFPE-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
514FFPE-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
515FFPE-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
516FFPE-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
517FFPE-Merge_Clinical10000
518FFPE-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
519FFPE-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
520FFPE-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
521FFPE-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
522FFPE-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
523FFPE-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
524FFPE-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
525FFPE-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
526FFPE-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
527FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
528FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
529FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
530FFPE-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
531FFPE-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
532FFPE-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
533FFPE-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
534FFPE-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
535FFPE-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
536FFPE-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
537FFPE-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
538FFPE-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
539FFPE-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
540FFPE-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
541FFPE-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
542FFPE-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
543FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
544FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
545FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
546FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
547FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
548FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
549FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
550FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
551FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
552FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
553FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
554FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
555FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
556FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
557FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
558FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
559FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
560FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
561FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
562FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
563FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
564FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
565FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
566FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
567FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
568FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
569FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
570FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
571FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
572FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
573FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
574FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
575FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
576FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
577FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
578FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
579FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
580FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
581FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
582FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
583FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
584FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
585FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
586FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
587FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
588FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
589FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
590FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
591FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
592FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
593FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
594FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
595FFPE-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
596FFPE-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
597FFPE-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
598FFPE-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
599FFPE-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
600FFPE-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
601FFPE-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
602FFPE-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
603FFPE-mRNAseq_Preprocess10000
604FFPE-Mutation_Packager_Calls10000
605FFPE-Mutation_Packager_Coverage10000
606FFPE-RPPA_AnnotateWithGene10000
Total493601070

This table generated on Wed Feb 18 16:34:05 2015