Broad GDAC dev Run Status : PANCAN12

Cohort

BCR

Clinical

LowP

Methylation

mRNA

mRNASeq

miR

miRSeq

RPPA

MAF

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Runnable	Successful
1	Clinical_Pick_Tier1	0	0	1
2	CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB	1	0	0
3	CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT	1	0	0
4	CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB	1	0	0
5	CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT	1	0	0
6	CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB	1	0	0
7	CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT	1	0	0
8	CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB	1	0	0
9	CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT	1	0	0
10	CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB	1	0	0
11	CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT	1	0	0
12	Merge_Clinical	0	0	1
13	Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0	0
14	Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	0	0	1
15	Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0	0
16	Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	0	0	1
17	Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0	0
18	Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	0	0	1
19	Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0	0
20	Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg	0	0	1
21	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg	0	0	1
22	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	0	0	1
23	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	0	0	1
24	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	0	1	0
25	Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0	0
26	Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	0	1
27	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	0	1
28	Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0	0
29	Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data	1	0	0
30	Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	0	0	1
31	Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data	1	0	0
32	Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	0	0	1
33	Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	1	0
34	Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	0	1
35	Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	1	0
36	Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	0	1
37	Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data	0	1	0
38	Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data	0	0	1
39	Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data	0	0	1
40	Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	0	0	1
41	Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data	0	0	1
42	Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data	0	0	1
43	Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data	0	0	1
44	Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data	0	0	1
45	Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data	0	0	1
46	Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	0	0	1
47	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data	0	0	1
48	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data	0	0	1
49	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data	0	0	1
50	Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data	0	0	1
51	Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data	0	0	1
52	Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	0	0	1
53	Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	0	0	1
54	Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	0	0	1
55	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data	0	0	1
56	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data	0	0	1
57	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	0	0	1
58	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	0	0	1
59	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	0	0	1
60	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	1	0	0
61	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	0	0	1
62	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	1	0	0
63	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	1	0	0
64	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	1	0	0
65	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	1	0	0
66	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	0	0	1
67	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	0	0	1
68	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	0	0	1
69	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	0	0	1
70	Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data	1	0	0
71	Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data	1	0	0
72	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0	0
73	Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data	1	0	0
74	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data	1	0	0
75	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data	1	0	0
76	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0	0
77	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	0	0	1
78	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg	0	0	1
79	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	0	0	1
80	Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	1	0	0
81	Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data	1	0	0
82	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0	0
83	Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	1	0	0
84	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data	1	0	0
85	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data	1	0	0
86	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0	0
87	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	0	0	1
88	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg	0	0	1
89	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	0	0	1
90	Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	0	0	1
91	Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	0	0	1
92	Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	0	0	1
93	Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	0	0	1
94	Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	0	0	1
95	Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	0	0	1
96	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	0	0	1
97	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	0	0	1
98	mRNAseq_Preprocess	0	1	0
99	Mutation_Packager_Calls	0	1	0
100	Mutation_Packager_Coverage	0	1	0
101	RPPA_AnnotateWithGene	1	0	0
102	TR-Clinical_Pick_Tier1	0	0	1
103	TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB	1	0	0
104	TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT	1	0	0
105	TR-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB	1	0	0
106	TR-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT	1	0	0
107	TR-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB	1	0	0
108	TR-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT	1	0	0
109	TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB	1	0	0
110	TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT	1	0	0
111	TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB	1	0	0
112	TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT	1	0	0
113	TR-Merge_Clinical	0	0	1
114	TR-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0	0
115	TR-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	0	0	1
116	TR-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0	0
117	TR-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	1	0	0
118	TR-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0	0
119	TR-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	1	0	0
120	TR-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0	0
121	TR-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg	0	0	1
122	TR-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg	1	0	0
123	TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	0	0	1
124	TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	0	0	1
125	TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	0	0	1
126	TR-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0	0
127	TR-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	0	1
128	TR-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	0	1
129	TR-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0	0
130	TR-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data	1	0	0
131	TR-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1	0	0
132	TR-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data	1	0	0
133	TR-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	0	0	1
134	TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	0	1
135	TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	0	1
136	TR-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	1	0
137	TR-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	0	1
138	TR-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data	0	0	1
139	TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data	1	0	0
140	TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data	1	0	0
141	TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	1	0	0
142	TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data	0	0	1
143	TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data	0	0	1
144	TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data	0	0	1
145	TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data	0	0	1
146	TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data	0	0	1
147	TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	0	0	1
148	TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data	1	0	0
149	TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data	1	0	0
150	TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data	1	0	0
151	TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data	0	0	1
152	TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data	0	0	1
153	TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	0	0	1
154	TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	0	0	1
155	TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	0	0	1
156	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data	0	0	1
157	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data	0	0	1
158	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	0	0	1
159	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	0	0	1
160	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	0	0	1
161	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	1	0	0
162	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	0	0	1
163	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	1	0	0
164	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	1	0	0
165	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	1	0	0
166	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	1	0	0
167	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	0	0	1
168	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	0	0	1
169	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	0	0	1
170	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	0	0	1
171	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data	1	0	0
172	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data	1	0	0
173	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0	0
174	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data	1	0	0
175	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data	1	0	0
176	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data	1	0	0
177	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0	0
178	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	0	0	1
179	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg	1	0	0
180	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	0	0	1
181	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	1	0	0
182	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data	1	0	0
183	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0	0
184	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	1	0	0
185	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data	1	0	0
186	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data	1	0	0
187	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0	0
188	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	1	0	0
189	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg	1	0	0
190	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	1	0	0
191	TR-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
192	TR-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
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756	NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data	1	0	0
757	NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data	1	0	0
758	NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data	1	0	0
759	NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	1	0	0
760	NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	1	0	0
761	NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	1	0	0
762	NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data	1	0	0
763	NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data	1	0	0
764	NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	1	0	0
765	NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	1	0	0
766	NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	1	0	0
767	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	1	0	0
768	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	0	0	1
769	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	1	0	0
770	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	1	0	0
771	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	1	0	0
772	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	1	0	0
773	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	0	0	1
774	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	0	0	1
775	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	0	0	1
776	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	0	0	1
777	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data	1	0	0
778	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data	1	0	0
779	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0	0
780	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data	1	0	0
781	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data	1	0	0
782	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data	1	0	0
783	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0	0
784	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	1	0	0
785	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg	0	0	1
786	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	1	0	0
787	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	1	0	0
788	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data	1	0	0
789	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0	0
790	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	1	0	0
791	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data	1	0	0
792	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data	1	0	0
793	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0	0
794	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	1	0	0
795	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg	0	0	1
796	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	1	0	0
797	NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
798	NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
799	NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
800	NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
801	NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
802	NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
803	NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	1	0	0
804	NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	1	0	0
805	NB-mRNAseq_Preprocess	1	0	0
806	NB-Mutation_Packager_Calls	1	0	0
807	NB-Mutation_Packager_Coverage	1	0	0
808	NB-RPPA_AnnotateWithGene	1	0	0
809	FFPE-Clinical_Pick_Tier1	0	0	1
810	FFPE-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB	1	0	0
811	FFPE-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT	1	0	0
812	FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB	1	0	0
813	FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT	1	0	0
814	FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB	1	0	0
815	FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT	1	0	0
816	FFPE-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB	1	0	0
817	FFPE-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT	1	0	0
818	FFPE-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB	1	0	0
819	FFPE-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT	1	0	0
820	FFPE-Merge_Clinical	0	0	1
821	FFPE-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0	0
822	FFPE-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	1	0	0
823	FFPE-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0	0
824	FFPE-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	1	0	0
825	FFPE-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0	0
826	FFPE-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	1	0	0
827	FFPE-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0	0
828	FFPE-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg	1	0	0
829	FFPE-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg	1	0	0
830	FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	1	0	0
831	FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	1	0	0
832	FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	1	0	0
833	FFPE-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0	0
834	FFPE-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	0	1
835	FFPE-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	0	1
836	FFPE-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0	0
837	FFPE-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data	1	0	0
838	FFPE-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1	0	0
839	FFPE-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data	1	0	0
840	FFPE-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1	0	0
841	FFPE-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	0	1
842	FFPE-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	0	1
843	FFPE-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	1	0
844	FFPE-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	0	1
845	FFPE-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data	0	0	1
846	FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data	1	0	0
847	FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data	1	0	0
848	FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	1	0	0
849	FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data	1	0	0
850	FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data	1	0	0
851	FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data	1	0	0
852	FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data	1	0	0
853	FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data	1	0	0
854	FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	1	0	0
855	FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data	1	0	0
856	FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data	1	0	0
857	FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data	1	0	0
858	FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data	0	0	1
859	FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data	0	0	1
860	FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	0	0	1
861	FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	0	0	1
862	FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	0	0	1
863	FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data	0	0	1
864	FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data	0	0	1
865	FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	0	0	1
866	FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	0	0	1
867	FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	0	0	1
868	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	1	0	0
869	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	0	0	1
870	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	1	0	0
871	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	1	0	0
872	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	1	0	0
873	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	1	0	0
874	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	0	0	1
875	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	0	0	1
876	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	0	0	1
877	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	0	0	1
878	FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data	1	0	0
879	FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data	1	0	0
880	FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0	0
881	FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data	1	0	0
882	FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data	1	0	0
883	FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data	1	0	0
884	FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0	0
885	FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	1	0	0
886	FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg	1	0	0
887	FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	1	0	0
888	FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	1	0	0
889	FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data	1	0	0
890	FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0	0
891	FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	1	0	0
892	FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data	1	0	0
893	FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data	1	0	0
894	FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0	0
895	FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	1	0	0
896	FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg	1	0	0
897	FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	1	0	0
898	FFPE-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
899	FFPE-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
900	FFPE-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
901	FFPE-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
902	FFPE-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
903	FFPE-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
904	FFPE-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	1	0	0
905	FFPE-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	1	0	0
906	FFPE-mRNAseq_Preprocess	0	0	1
907	FFPE-Mutation_Packager_Calls	1	0	0
908	FFPE-Mutation_Packager_Coverage	1	0	0
909	FFPE-RPPA_AnnotateWithGene	0	1	0
	Total	591	32	286

This table generated on Wed Feb 18 16:34:09 2015

Broad GDAC Analyses Status dev Run for Tumor Type: PANCAN12

Broad GDAC Analyses Status
dev Run for Tumor Type: PANCAN12