Broad GDAC Analyses Status
dev Run for Tumor Type: STAD

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAF
STAD44339744210738602740442264221

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Clinical_Pick_Tier100010
2CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
3CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
4CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
5CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
6CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
7CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
8CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
9CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
10CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
11CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
12Merge_Clinical00010
13Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
14Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
15Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
16Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
17Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
18Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
19Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
20Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
21Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg00010
22Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
23Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
24Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
25Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
26Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
27Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
28Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
29Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
30Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
31Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
32Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
33Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
34Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
35Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
36Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
37Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data00010
38Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data00010
39Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data00010
40Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data00010
41Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
42Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
43Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
44Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data00010
45Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data00010
46Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data00010
47Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
48Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
49Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
50Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
51Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
52Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
53Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
54Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
55Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
56Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
57Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
58Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
59Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
60Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
61Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
62Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
63Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
64Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
65Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
66Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
67Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
68Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
69Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
70Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
71Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
72Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
73Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
74Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
75Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
76Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
77Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
78Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
79Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
80Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
81Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
82Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
83Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
84Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
85Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
86Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
87Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
88Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
89Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
90Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
91Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
92Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
93Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
94Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
95Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
96Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
97Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
98mRNAseq_Preprocess00010
99Mutation_Packager_Calls01000
100Mutation_Packager_Coverage01000
101RPPA_AnnotateWithGene00010
102TP-Clinical_Pick_Tier100010
103TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
104TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
105TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
106TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
107TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
108TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
109TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
110TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
111TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
112TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
113TP-Merge_Clinical00010
114TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
115TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
116TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
117TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
118TP-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
119TP-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
120TP-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
121TP-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
122TP-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg00010
123TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
124TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
125TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
126TP-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
127TP-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
128TP-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
129TP-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
130TP-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
131TP-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
132TP-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
133TP-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
134TP-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
135TP-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
136TP-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
137TP-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
138TP-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data00010
139TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data00010
140TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data00010
141TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data00010
142TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
143TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
144TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
145TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data00010
146TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data00010
147TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data00010
148TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
149TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
150TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
151TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
152TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
153TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
154TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
155TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
156TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
157TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
158TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
159TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
160TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
161TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
162TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
163TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
164TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
165TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
166TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
167TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
168TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
169TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
170TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
171TP-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
172TP-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
173TP-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
174TP-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
175TP-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
176TP-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
177TP-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
178TP-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
179TP-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
180TP-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
181TP-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
182TP-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
183TP-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
184TP-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
185TP-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
186TP-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
187TP-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
188TP-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
189TP-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
190TP-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
191TP-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
192TP-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
193TP-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
194TP-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
195TP-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
196TP-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
197TP-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
198TP-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
199TP-mRNAseq_Preprocess00010
200TP-Mutation_Packager_Calls01000
201TP-Mutation_Packager_Coverage01000
202TP-RPPA_AnnotateWithGene00010
203NT-Clinical_Pick_Tier100010
204NT-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
205NT-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
206NT-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
207NT-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT01000
208NT-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
209NT-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
210NT-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
211NT-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
212NT-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
213NT-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
214NT-Merge_Clinical00010
215NT-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
216NT-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
217NT-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
218NT-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
219NT-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
220NT-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
221NT-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
222NT-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
223NT-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg00010
224NT-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
225NT-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
226NT-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
227NT-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
228NT-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
229NT-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
230NT-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
231NT-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
232NT-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
233NT-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
234NT-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
235NT-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
236NT-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
237NT-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
238NT-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
239NT-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
240NT-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
241NT-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
242NT-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
243NT-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
244NT-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
245NT-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
246NT-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data00010
247NT-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data00010
248NT-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data00010
249NT-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
250NT-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
251NT-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
252NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
253NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
254NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
255NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
256NT-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
257NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
258NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
259NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
260NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
261NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
262NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
263NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
264NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
265NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
266NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
267NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
268NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
269NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
270NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
271NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
272NT-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
273NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
274NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
275NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
276NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
277NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
278NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
279NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
280NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
281NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
282NT-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
283NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
284NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
285NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
286NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
287NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
288NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
289NT-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
290NT-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
291NT-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
292NT-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
293NT-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
294NT-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
295NT-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
296NT-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
297NT-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
298NT-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
299NT-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
300NT-mRNAseq_Preprocess00010
301NT-Mutation_Packager_Calls10000
302NT-Mutation_Packager_Coverage10000
303NT-RPPA_AnnotateWithGene10000
304NB-Clinical_Pick_Tier100010
305NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
306NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
307NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
308NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
309NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
310NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
311NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
312NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
313NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
314NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
315NB-Merge_Clinical00010
316NB-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
317NB-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
318NB-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
319NB-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
320NB-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
321NB-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
322NB-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
323NB-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
324NB-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg00010
325NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
326NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
327NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
328NB-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
329NB-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
330NB-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
331NB-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
332NB-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
333NB-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
334NB-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
335NB-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
336NB-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
337NB-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
338NB-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
339NB-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
340NB-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
341NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
342NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
343NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
344NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
345NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
346NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
347NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
348NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
349NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
350NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
351NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
352NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
353NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
354NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
355NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
356NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
357NB-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
358NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
359NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
360NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
361NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
362NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
363NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
364NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
365NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
366NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
367NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
368NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
369NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
370NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
371NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
372NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
373NB-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
374NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
375NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
376NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
377NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
378NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
379NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
380NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
381NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
382NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
383NB-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
384NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
385NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
386NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
387NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
388NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
389NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
390NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
391NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
392NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
393NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
394NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
395NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
396NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
397NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
398NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
399NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
400NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
401NB-mRNAseq_Preprocess10000
402NB-Mutation_Packager_Calls10000
403NB-Mutation_Packager_Coverage10000
404NB-RPPA_AnnotateWithGene10000
Total32950700

This table generated on Wed Feb 18 16:34:14 2015