Broad GDAC Analyses Status
gdc_dev Run for Tumor Type: TCGA-BRCA
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
1
0
0
0
2
Aggregate_Molecular_Subtype_Clusters
0
1
0
0
0
3
CopyNumber_Clustering_CNMF
0
0
1
0
0
4
CopyNumber_Clustering_CNMF_thresholded
0
0
1
0
0
5
CopyNumber_Gistic2
0
0
0
1
0
6
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
7
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
8
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
9
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
10
Correlate_Clinical_vs_mRNA
1
0
0
0
0
11
Correlate_CopyNumber_vs_miR
0
0
0
1
0
12
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
13
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
14
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
15
miR_FindDirectTargets
1
0
0
0
0
16
miR_Mature_Clustering_CNMF
0
0
1
0
0
17
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
18
miR_Mature_Preprocess
0
0
0
1
0
19
mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
20
mRNA_lincRNA_CNMF
1
0
0
0
0
21
mRNA_Preprocess
1
0
0
0
0
22
mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
23
mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
24
Mutation_CoOccurrence
1
0
0
0
0
25
Pathway_GSEA_mRNA
1
0
0
0
0
26
TP-Aggregate_AnalysisFeatures
0
1
0
0
0
27
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
28
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
29
TP-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
30
TP-CopyNumber_Gistic2
0
0
0
1
0
31
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
32
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
33
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
34
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
35
TP-Correlate_Clinical_vs_mRNA
1
0
0
0
0
36
TP-Correlate_CopyNumber_vs_miR
0
0
0
1
0
37
TP-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
38
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
1
0
0
0
39
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
1
0
0
0
40
TP-miR_FindDirectTargets
1
0
0
0
0
41
TP-miR_Mature_Clustering_CNMF
0
0
1
0
0
42
TP-miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
43
TP-miR_Mature_Preprocess
0
0
0
1
0
44
TP-mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
45
TP-mRNA_lincRNA_CNMF
1
0
0
0
0
46
TP-mRNA_Preprocess
1
0
0
0
0
47
TP-mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
48
TP-mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
49
TP-Mutation_CoOccurrence
1
0
0
0
0
50
TP-Pathway_GSEA_mRNA
1
0
0
0
0
51
TM-Aggregate_AnalysisFeatures
0
0
0
1
0
52
TM-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
53
TM-CopyNumber_Clustering_CNMF
1
0
0
0
0
54
TM-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
55
TM-CopyNumber_Gistic2
0
0
0
1
0
56
TM-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
57
TM-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
58
TM-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
59
TM-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
60
TM-Correlate_Clinical_vs_mRNA
0
0
0
1
0
61
TM-Correlate_CopyNumber_vs_miR
1
0
0
0
0
62
TM-Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
63
TM-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
64
TM-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
65
TM-miR_FindDirectTargets
1
0
0
0
0
66
TM-miR_Mature_Clustering_CNMF
1
0
0
0
0
67
TM-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
68
TM-miR_Mature_Preprocess
0
0
0
1
0
69
TM-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
70
TM-mRNA_lincRNA_CNMF
0
0
0
0
1
71
TM-mRNA_Preprocess
0
0
0
1
0
72
TM-mRNA_protein_coding_Clustering_CNMF
0
0
0
0
1
73
TM-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
0
1
74
TM-Mutation_CoOccurrence
0
0
0
1
0
75
TM-Pathway_GSEA_mRNA
1
0
0
0
0
76
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
77
NT-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
78
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
79
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
80
NT-CopyNumber_Gistic2
0
0
0
0
1
81
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
82
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
83
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
84
NT-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
85
NT-Correlate_Clinical_vs_mRNA
0
0
0
1
0
86
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
87
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
88
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
89
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
90
NT-miR_FindDirectTargets
0
0
0
1
0
91
NT-miR_Mature_Clustering_CNMF
0
0
0
1
0
92
NT-miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
93
NT-miR_Mature_Preprocess
0
0
0
1
0
94
NT-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
95
NT-mRNA_lincRNA_CNMF
0
0
0
1
0
96
NT-mRNA_Preprocess
0
0
0
1
0
97
NT-mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
98
NT-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
99
NT-Mutation_CoOccurrence
1
0
0
0
0
100
NT-Pathway_GSEA_mRNA
0
0
0
0
1
101
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
102
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
103
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
104
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
105
NB-CopyNumber_Gistic2
0
0
0
0
1
106
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
107
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
108
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
109
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
110
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
111
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
112
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
113
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
114
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
115
NB-miR_FindDirectTargets
1
0
0
0
0
116
NB-miR_Mature_Clustering_CNMF
1
0
0
0
0
117
NB-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
118
NB-miR_Mature_Preprocess
1
0
0
0
0
119
NB-mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
120
NB-mRNA_lincRNA_CNMF
1
0
0
0
0
121
NB-mRNA_Preprocess
1
0
0
0
0
122
NB-mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
123
NB-mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
124
NB-Mutation_CoOccurrence
1
0
0
0
0
125
NB-Pathway_GSEA_mRNA
1
0
0
0
0
Total
67
7
4
40
7
This table generated on Sat Nov 5 12:09:31 2016