Broad GDAC Analyses Status
gdc_dev Run for Tumor Type: TCGA-BRCA

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures01000
2Aggregate_Molecular_Subtype_Clusters01000
3CopyNumber_Clustering_CNMF00100
4CopyNumber_Clustering_CNMF_thresholded00100
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Molecular_Subtypes10000
10Correlate_Clinical_vs_mRNA10000
11Correlate_CopyNumber_vs_miR00010
12Correlate_CopyNumber_vs_mRNA10000
13Correlate_molecularSubtype_vs_CopyNumber_Arm10000
14Correlate_molecularSubtype_vs_CopyNumber_Focal10000
15miR_FindDirectTargets10000
16miR_Mature_Clustering_CNMF00100
17miR_Mature_Clustering_Consensus_Plus00010
18miR_Mature_Preprocess00010
19mRNA_lincRNA_Clustering_Consensus_Plus10000
20mRNA_lincRNA_CNMF10000
21mRNA_Preprocess10000
22mRNA_protein_coding_Clustering_CNMF10000
23mRNA_protein_coding_Clustering_Consensus_Plus10000
24Mutation_CoOccurrence10000
25Pathway_GSEA_mRNA10000
26TP-Aggregate_AnalysisFeatures01000
27TP-Aggregate_Molecular_Subtype_Clusters00010
28TP-CopyNumber_Clustering_CNMF00010
29TP-CopyNumber_Clustering_CNMF_thresholded00010
30TP-CopyNumber_Gistic200010
31TP-CopyNumber_Gistic2_Postprocess_Focal00010
32TP-Correlate_Clinical_vs_CopyNumber_Arm00010
33TP-Correlate_Clinical_vs_CopyNumber_Focal00010
34TP-Correlate_Clinical_vs_Molecular_Subtypes00010
35TP-Correlate_Clinical_vs_mRNA10000
36TP-Correlate_CopyNumber_vs_miR00010
37TP-Correlate_CopyNumber_vs_mRNA10000
38TP-Correlate_molecularSubtype_vs_CopyNumber_Arm01000
39TP-Correlate_molecularSubtype_vs_CopyNumber_Focal01000
40TP-miR_FindDirectTargets10000
41TP-miR_Mature_Clustering_CNMF00100
42TP-miR_Mature_Clustering_Consensus_Plus00010
43TP-miR_Mature_Preprocess00010
44TP-mRNA_lincRNA_Clustering_Consensus_Plus10000
45TP-mRNA_lincRNA_CNMF10000
46TP-mRNA_Preprocess10000
47TP-mRNA_protein_coding_Clustering_CNMF10000
48TP-mRNA_protein_coding_Clustering_Consensus_Plus10000
49TP-Mutation_CoOccurrence10000
50TP-Pathway_GSEA_mRNA10000
51TM-Aggregate_AnalysisFeatures00010
52TM-Aggregate_Molecular_Subtype_Clusters10000
53TM-CopyNumber_Clustering_CNMF10000
54TM-CopyNumber_Clustering_CNMF_thresholded10000
55TM-CopyNumber_Gistic200010
56TM-CopyNumber_Gistic2_Postprocess_Focal00010
57TM-Correlate_Clinical_vs_CopyNumber_Arm00010
58TM-Correlate_Clinical_vs_CopyNumber_Focal00010
59TM-Correlate_Clinical_vs_Molecular_Subtypes10000
60TM-Correlate_Clinical_vs_mRNA00010
61TM-Correlate_CopyNumber_vs_miR10000
62TM-Correlate_CopyNumber_vs_mRNA00010
63TM-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
64TM-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
65TM-miR_FindDirectTargets10000
66TM-miR_Mature_Clustering_CNMF10000
67TM-miR_Mature_Clustering_Consensus_Plus10000
68TM-miR_Mature_Preprocess00010
69TM-mRNA_lincRNA_Clustering_Consensus_Plus00001
70TM-mRNA_lincRNA_CNMF00001
71TM-mRNA_Preprocess00010
72TM-mRNA_protein_coding_Clustering_CNMF00001
73TM-mRNA_protein_coding_Clustering_Consensus_Plus00001
74TM-Mutation_CoOccurrence00010
75TM-Pathway_GSEA_mRNA10000
76NT-Aggregate_AnalysisFeatures01000
77NT-Aggregate_Molecular_Subtype_Clusters00010
78NT-CopyNumber_Clustering_CNMF10000
79NT-CopyNumber_Clustering_CNMF_thresholded10000
80NT-CopyNumber_Gistic200001
81NT-CopyNumber_Gistic2_Postprocess_Focal10000
82NT-Correlate_Clinical_vs_CopyNumber_Arm10000
83NT-Correlate_Clinical_vs_CopyNumber_Focal10000
84NT-Correlate_Clinical_vs_Molecular_Subtypes00010
85NT-Correlate_Clinical_vs_mRNA00010
86NT-Correlate_CopyNumber_vs_miR10000
87NT-Correlate_CopyNumber_vs_mRNA10000
88NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
89NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
90NT-miR_FindDirectTargets00010
91NT-miR_Mature_Clustering_CNMF00010
92NT-miR_Mature_Clustering_Consensus_Plus00010
93NT-miR_Mature_Preprocess00010
94NT-mRNA_lincRNA_Clustering_Consensus_Plus00010
95NT-mRNA_lincRNA_CNMF00010
96NT-mRNA_Preprocess00010
97NT-mRNA_protein_coding_Clustering_CNMF00010
98NT-mRNA_protein_coding_Clustering_Consensus_Plus00010
99NT-Mutation_CoOccurrence10000
100NT-Pathway_GSEA_mRNA00001
101NB-Aggregate_AnalysisFeatures01000
102NB-Aggregate_Molecular_Subtype_Clusters10000
103NB-CopyNumber_Clustering_CNMF10000
104NB-CopyNumber_Clustering_CNMF_thresholded10000
105NB-CopyNumber_Gistic200001
106NB-CopyNumber_Gistic2_Postprocess_Focal10000
107NB-Correlate_Clinical_vs_CopyNumber_Arm10000
108NB-Correlate_Clinical_vs_CopyNumber_Focal10000
109NB-Correlate_Clinical_vs_Molecular_Subtypes10000
110NB-Correlate_Clinical_vs_mRNA10000
111NB-Correlate_CopyNumber_vs_miR10000
112NB-Correlate_CopyNumber_vs_mRNA10000
113NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
114NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
115NB-miR_FindDirectTargets10000
116NB-miR_Mature_Clustering_CNMF10000
117NB-miR_Mature_Clustering_Consensus_Plus10000
118NB-miR_Mature_Preprocess10000
119NB-mRNA_lincRNA_Clustering_Consensus_Plus10000
120NB-mRNA_lincRNA_CNMF10000
121NB-mRNA_Preprocess10000
122NB-mRNA_protein_coding_Clustering_CNMF10000
123NB-mRNA_protein_coding_Clustering_Consensus_Plus10000
124NB-Mutation_CoOccurrence10000
125NB-Pathway_GSEA_mRNA10000
Total6774407

This table generated on Sat Nov 5 12:09:31 2016