Broad GDAC Analyses Status
gdc_dev Run for Tumor Type: TCGA-CHOL

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures00010
2Aggregate_Molecular_Subtype_Clusters00010
3CopyNumber_Clustering_CNMF00010
4CopyNumber_Clustering_CNMF_thresholded00010
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Molecular_Subtypes00010
10Correlate_Clinical_vs_mRNA00010
11Correlate_CopyNumber_vs_miR00010
12Correlate_CopyNumber_vs_mRNA00010
13Correlate_molecularSubtype_vs_CopyNumber_Arm00010
14Correlate_molecularSubtype_vs_CopyNumber_Focal00010
15miR_FindDirectTargets00010
16miR_Mature_Clustering_CNMF00010
17miR_Mature_Clustering_Consensus_Plus00010
18miR_Mature_Preprocess00010
19mRNA_lincRNA_Clustering_Consensus_Plus00001
20mRNA_lincRNA_CNMF00001
21mRNA_Preprocess00010
22mRNA_protein_coding_Clustering_CNMF00001
23mRNA_protein_coding_Clustering_Consensus_Plus00001
24Mutation_CoOccurrence00010
25Pathway_GSEA_mRNA00001
26TP-Aggregate_AnalysisFeatures00010
27TP-Aggregate_Molecular_Subtype_Clusters00010
28TP-CopyNumber_Clustering_CNMF00010
29TP-CopyNumber_Clustering_CNMF_thresholded00010
30TP-CopyNumber_Gistic200010
31TP-CopyNumber_Gistic2_Postprocess_Focal00010
32TP-Correlate_Clinical_vs_CopyNumber_Arm00010
33TP-Correlate_Clinical_vs_CopyNumber_Focal00010
34TP-Correlate_Clinical_vs_Molecular_Subtypes00010
35TP-Correlate_Clinical_vs_mRNA00010
36TP-Correlate_CopyNumber_vs_miR00010
37TP-Correlate_CopyNumber_vs_mRNA00010
38TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
39TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
40TP-miR_FindDirectTargets00010
41TP-miR_Mature_Clustering_CNMF00010
42TP-miR_Mature_Clustering_Consensus_Plus00010
43TP-miR_Mature_Preprocess00010
44TP-mRNA_lincRNA_Clustering_Consensus_Plus00001
45TP-mRNA_lincRNA_CNMF00001
46TP-mRNA_Preprocess00010
47TP-mRNA_protein_coding_Clustering_CNMF00010
48TP-mRNA_protein_coding_Clustering_Consensus_Plus00010
49TP-Mutation_CoOccurrence00010
50TP-Pathway_GSEA_mRNA00001
51NT-Aggregate_AnalysisFeatures01000
52NT-Aggregate_Molecular_Subtype_Clusters10000
53NT-CopyNumber_Clustering_CNMF10000
54NT-CopyNumber_Clustering_CNMF_thresholded10000
55NT-CopyNumber_Gistic200001
56NT-CopyNumber_Gistic2_Postprocess_Focal10000
57NT-Correlate_Clinical_vs_CopyNumber_Arm10000
58NT-Correlate_Clinical_vs_CopyNumber_Focal10000
59NT-Correlate_Clinical_vs_Molecular_Subtypes10000
60NT-Correlate_Clinical_vs_mRNA00010
61NT-Correlate_CopyNumber_vs_miR10000
62NT-Correlate_CopyNumber_vs_mRNA10000
63NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
64NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
65NT-miR_FindDirectTargets10000
66NT-miR_Mature_Clustering_CNMF10000
67NT-miR_Mature_Clustering_Consensus_Plus10000
68NT-miR_Mature_Preprocess00010
69NT-mRNA_lincRNA_Clustering_Consensus_Plus00001
70NT-mRNA_lincRNA_CNMF00001
71NT-mRNA_Preprocess00010
72NT-mRNA_protein_coding_Clustering_CNMF00001
73NT-mRNA_protein_coding_Clustering_Consensus_Plus00001
74NT-Mutation_CoOccurrence10000
75NT-Pathway_GSEA_mRNA10000
76NB-Aggregate_AnalysisFeatures01000
77NB-Aggregate_Molecular_Subtype_Clusters10000
78NB-CopyNumber_Clustering_CNMF10000
79NB-CopyNumber_Clustering_CNMF_thresholded10000
80NB-CopyNumber_Gistic200001
81NB-CopyNumber_Gistic2_Postprocess_Focal10000
82NB-Correlate_Clinical_vs_CopyNumber_Arm10000
83NB-Correlate_Clinical_vs_CopyNumber_Focal10000
84NB-Correlate_Clinical_vs_Molecular_Subtypes10000
85NB-Correlate_Clinical_vs_mRNA10000
86NB-Correlate_CopyNumber_vs_miR10000
87NB-Correlate_CopyNumber_vs_mRNA10000
88NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
89NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
90NB-miR_FindDirectTargets10000
91NB-miR_Mature_Clustering_CNMF10000
92NB-miR_Mature_Clustering_Consensus_Plus10000
93NB-miR_Mature_Preprocess10000
94NB-mRNA_lincRNA_Clustering_Consensus_Plus10000
95NB-mRNA_lincRNA_CNMF10000
96NB-mRNA_Preprocess10000
97NB-mRNA_protein_coding_Clustering_CNMF10000
98NB-mRNA_protein_coding_Clustering_Consensus_Plus10000
99NB-Mutation_CoOccurrence10000
100NB-Pathway_GSEA_mRNA10000
Total39204514

This table generated on Sat Nov 5 12:09:31 2016