Broad GDAC Analyses Status
gdc_dev Run for Tumor Type: TCGA-COAD
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Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
0
0
0
1
2
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
3
CopyNumber_Clustering_CNMF
0
0
0
1
0
4
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
5
CopyNumber_Gistic2
0
0
0
1
0
6
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
7
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
8
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
9
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
10
Correlate_Clinical_vs_mRNA
0
0
0
1
0
11
Correlate_CopyNumber_vs_miR
0
0
0
1
0
12
Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
13
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
14
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
15
miR_FindDirectTargets
0
0
0
1
0
16
miR_Mature_Clustering_CNMF
0
0
0
1
0
17
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
18
miR_Mature_Preprocess
0
0
0
1
0
19
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
20
mRNA_lincRNA_CNMF
0
0
0
1
0
21
mRNA_Preprocess
0
0
0
1
0
22
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
23
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
24
Mutation_CoOccurrence
1
0
0
0
0
25
Pathway_GSEA_mRNA
0
0
0
0
1
26
TR-Aggregate_AnalysisFeatures
0
1
0
0
0
27
TR-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
28
TR-CopyNumber_Clustering_CNMF
1
0
0
0
0
29
TR-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
30
TR-CopyNumber_Gistic2
0
0
0
0
1
31
TR-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
32
TR-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
33
TR-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
34
TR-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
35
TR-Correlate_Clinical_vs_mRNA
1
0
0
0
0
36
TR-Correlate_CopyNumber_vs_miR
1
0
0
0
0
37
TR-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
38
TR-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
39
TR-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
40
TR-miR_FindDirectTargets
1
0
0
0
0
41
TR-miR_Mature_Clustering_CNMF
1
0
0
0
0
42
TR-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
43
TR-miR_Mature_Preprocess
0
0
0
1
0
44
TR-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
45
TR-mRNA_lincRNA_CNMF
0
0
0
0
1
46
TR-mRNA_Preprocess
0
0
0
1
0
47
TR-mRNA_protein_coding_Clustering_CNMF
0
0
0
0
1
48
TR-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
0
1
49
TR-Mutation_CoOccurrence
1
0
0
0
0
50
TR-Pathway_GSEA_mRNA
1
0
0
0
0
51
TP-Aggregate_AnalysisFeatures
0
0
0
0
1
52
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
53
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
54
TP-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
55
TP-CopyNumber_Gistic2
0
0
0
1
0
56
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
57
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
58
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
59
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
60
TP-Correlate_Clinical_vs_mRNA
0
0
0
1
0
61
TP-Correlate_CopyNumber_vs_miR
0
0
0
1
0
62
TP-Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
63
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
64
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
65
TP-miR_FindDirectTargets
0
0
0
1
0
66
TP-miR_Mature_Clustering_CNMF
0
0
0
1
0
67
TP-miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
68
TP-miR_Mature_Preprocess
0
0
0
1
0
69
TP-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
70
TP-mRNA_lincRNA_CNMF
0
0
0
1
0
71
TP-mRNA_Preprocess
0
0
0
1
0
72
TP-mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
73
TP-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
74
TP-Mutation_CoOccurrence
1
0
0
0
0
75
TP-Pathway_GSEA_mRNA
0
0
0
0
1
76
TM-Aggregate_AnalysisFeatures
0
1
0
0
0
77
TM-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
78
TM-CopyNumber_Clustering_CNMF
1
0
0
0
0
79
TM-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
80
TM-CopyNumber_Gistic2
0
0
0
0
1
81
TM-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
82
TM-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
83
TM-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
84
TM-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
85
TM-Correlate_Clinical_vs_mRNA
1
0
0
0
0
86
TM-Correlate_CopyNumber_vs_miR
1
0
0
0
0
87
TM-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
88
TM-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
89
TM-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
90
TM-miR_FindDirectTargets
1
0
0
0
0
91
TM-miR_Mature_Clustering_CNMF
1
0
0
0
0
92
TM-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
93
TM-miR_Mature_Preprocess
0
0
0
1
0
94
TM-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
95
TM-mRNA_lincRNA_CNMF
0
0
0
0
1
96
TM-mRNA_Preprocess
0
0
0
1
0
97
TM-mRNA_protein_coding_Clustering_CNMF
0
0
0
0
1
98
TM-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
0
1
99
TM-Mutation_CoOccurrence
1
0
0
0
0
100
TM-Pathway_GSEA_mRNA
1
0
0
0
0
101
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
102
NT-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
103
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
104
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
105
NT-CopyNumber_Gistic2
0
0
0
0
1
106
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
107
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
108
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
109
NT-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
110
NT-Correlate_Clinical_vs_mRNA
0
0
0
1
0
111
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
112
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
113
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
114
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
115
NT-miR_FindDirectTargets
1
0
0
0
0
116
NT-miR_Mature_Clustering_CNMF
1
0
0
0
0
117
NT-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
118
NT-miR_Mature_Preprocess
0
0
0
1
0
119
NT-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
120
NT-mRNA_lincRNA_CNMF
0
0
0
0
1
121
NT-mRNA_Preprocess
0
0
0
1
0
122
NT-mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
123
NT-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
124
NT-Mutation_CoOccurrence
1
0
0
0
0
125
NT-Pathway_GSEA_mRNA
0
0
0
0
1
126
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
127
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
128
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
129
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
130
NB-CopyNumber_Gistic2
0
0
0
0
1
131
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
132
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
133
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
134
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
135
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
136
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
137
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
138
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
139
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
140
NB-miR_FindDirectTargets
1
0
0
0
0
141
NB-miR_Mature_Clustering_CNMF
1
0
0
0
0
142
NB-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
143
NB-miR_Mature_Preprocess
1
0
0
0
0
144
NB-mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
145
NB-mRNA_lincRNA_CNMF
1
0
0
0
0
146
NB-mRNA_Preprocess
1
0
0
0
0
147
NB-mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
148
NB-mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
149
NB-Mutation_CoOccurrence
1
0
0
0
0
150
NB-Pathway_GSEA_mRNA
1
0
0
0
0
Total
72
4
0
56
18
This table generated on Sat Nov 5 12:09:31 2016