Broad GDAC Analyses Status
gdc_dev Run for Tumor Type: TCGA-GBM

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures00001
2Aggregate_Molecular_Subtype_Clusters00010
3CopyNumber_Clustering_CNMF00010
4CopyNumber_Clustering_CNMF_thresholded00010
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Molecular_Subtypes00010
10Correlate_Clinical_vs_mRNA00010
11Correlate_CopyNumber_vs_miR10000
12Correlate_CopyNumber_vs_mRNA00010
13Correlate_molecularSubtype_vs_CopyNumber_Arm00010
14Correlate_molecularSubtype_vs_CopyNumber_Focal00010
15miR_FindDirectTargets10000
16miR_Mature_Clustering_CNMF10000
17miR_Mature_Clustering_Consensus_Plus10000
18miR_Mature_Preprocess00010
19mRNA_lincRNA_Clustering_Consensus_Plus00010
20mRNA_lincRNA_CNMF00010
21mRNA_Preprocess00010
22mRNA_protein_coding_Clustering_CNMF00010
23mRNA_protein_coding_Clustering_Consensus_Plus00010
24Mutation_CoOccurrence10000
25Pathway_GSEA_mRNA00001
26TR-Aggregate_AnalysisFeatures00010
27TR-Aggregate_Molecular_Subtype_Clusters00010
28TR-CopyNumber_Clustering_CNMF10000
29TR-CopyNumber_Clustering_CNMF_thresholded10000
30TR-CopyNumber_Gistic200010
31TR-CopyNumber_Gistic2_Postprocess_Focal00010
32TR-Correlate_Clinical_vs_CopyNumber_Arm00010
33TR-Correlate_Clinical_vs_CopyNumber_Focal00010
34TR-Correlate_Clinical_vs_Molecular_Subtypes00010
35TR-Correlate_Clinical_vs_mRNA00010
36TR-Correlate_CopyNumber_vs_miR10000
37TR-Correlate_CopyNumber_vs_mRNA00010
38TR-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
39TR-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
40TR-miR_FindDirectTargets10000
41TR-miR_Mature_Clustering_CNMF10000
42TR-miR_Mature_Clustering_Consensus_Plus10000
43TR-miR_Mature_Preprocess10000
44TR-mRNA_lincRNA_Clustering_Consensus_Plus00001
45TR-mRNA_lincRNA_CNMF00001
46TR-mRNA_Preprocess00010
47TR-mRNA_protein_coding_Clustering_CNMF00001
48TR-mRNA_protein_coding_Clustering_Consensus_Plus00001
49TR-Mutation_CoOccurrence00010
50TR-Pathway_GSEA_mRNA00001
51TP-Aggregate_AnalysisFeatures00010
52TP-Aggregate_Molecular_Subtype_Clusters00010
53TP-CopyNumber_Clustering_CNMF00010
54TP-CopyNumber_Clustering_CNMF_thresholded00010
55TP-CopyNumber_Gistic200010
56TP-CopyNumber_Gistic2_Postprocess_Focal00010
57TP-Correlate_Clinical_vs_CopyNumber_Arm00010
58TP-Correlate_Clinical_vs_CopyNumber_Focal00010
59TP-Correlate_Clinical_vs_Molecular_Subtypes00010
60TP-Correlate_Clinical_vs_mRNA00010
61TP-Correlate_CopyNumber_vs_miR10000
62TP-Correlate_CopyNumber_vs_mRNA00010
63TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
64TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
65TP-miR_FindDirectTargets10000
66TP-miR_Mature_Clustering_CNMF10000
67TP-miR_Mature_Clustering_Consensus_Plus10000
68TP-miR_Mature_Preprocess10000
69TP-mRNA_lincRNA_Clustering_Consensus_Plus00010
70TP-mRNA_lincRNA_CNMF00010
71TP-mRNA_Preprocess00010
72TP-mRNA_protein_coding_Clustering_CNMF00010
73TP-mRNA_protein_coding_Clustering_Consensus_Plus00010
74TP-Mutation_CoOccurrence00010
75TP-Pathway_GSEA_mRNA00001
76NT-Aggregate_AnalysisFeatures01000
77NT-Aggregate_Molecular_Subtype_Clusters10000
78NT-CopyNumber_Clustering_CNMF10000
79NT-CopyNumber_Clustering_CNMF_thresholded10000
80NT-CopyNumber_Gistic200001
81NT-CopyNumber_Gistic2_Postprocess_Focal10000
82NT-Correlate_Clinical_vs_CopyNumber_Arm10000
83NT-Correlate_Clinical_vs_CopyNumber_Focal10000
84NT-Correlate_Clinical_vs_Molecular_Subtypes10000
85NT-Correlate_Clinical_vs_mRNA00001
86NT-Correlate_CopyNumber_vs_miR10000
87NT-Correlate_CopyNumber_vs_mRNA10000
88NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
89NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
90NT-miR_FindDirectTargets10000
91NT-miR_Mature_Clustering_CNMF10000
92NT-miR_Mature_Clustering_Consensus_Plus10000
93NT-miR_Mature_Preprocess00010
94NT-mRNA_lincRNA_Clustering_Consensus_Plus00001
95NT-mRNA_lincRNA_CNMF00001
96NT-mRNA_Preprocess00010
97NT-mRNA_protein_coding_Clustering_CNMF00001
98NT-mRNA_protein_coding_Clustering_Consensus_Plus00001
99NT-Mutation_CoOccurrence10000
100NT-Pathway_GSEA_mRNA10000
101NB-Aggregate_AnalysisFeatures01000
102NB-Aggregate_Molecular_Subtype_Clusters10000
103NB-CopyNumber_Clustering_CNMF10000
104NB-CopyNumber_Clustering_CNMF_thresholded10000
105NB-CopyNumber_Gistic200001
106NB-CopyNumber_Gistic2_Postprocess_Focal10000
107NB-Correlate_Clinical_vs_CopyNumber_Arm10000
108NB-Correlate_Clinical_vs_CopyNumber_Focal10000
109NB-Correlate_Clinical_vs_Molecular_Subtypes10000
110NB-Correlate_Clinical_vs_mRNA10000
111NB-Correlate_CopyNumber_vs_miR10000
112NB-Correlate_CopyNumber_vs_mRNA10000
113NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
114NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
115NB-miR_FindDirectTargets10000
116NB-miR_Mature_Clustering_CNMF10000
117NB-miR_Mature_Clustering_Consensus_Plus10000
118NB-miR_Mature_Preprocess10000
119NB-mRNA_lincRNA_Clustering_Consensus_Plus10000
120NB-mRNA_lincRNA_CNMF10000
121NB-mRNA_Preprocess10000
122NB-mRNA_protein_coding_Clustering_CNMF10000
123NB-mRNA_protein_coding_Clustering_Consensus_Plus10000
124NB-Mutation_CoOccurrence10000
125NB-Pathway_GSEA_mRNA10000
Total56205215

This table generated on Sat Nov 5 12:09:32 2016