Broad GDAC Analyses Status
gdc_dev Run for Tumor Type: TCGA-LGG

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures00001
2Aggregate_Molecular_Subtype_Clusters00010
3CopyNumber_Clustering_CNMF00010
4CopyNumber_Clustering_CNMF_thresholded00010
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Molecular_Subtypes00010
10Correlate_Clinical_vs_mRNA00010
11Correlate_CopyNumber_vs_miR00010
12Correlate_CopyNumber_vs_mRNA00010
13Correlate_molecularSubtype_vs_CopyNumber_Arm00010
14Correlate_molecularSubtype_vs_CopyNumber_Focal00010
15miR_FindDirectTargets00010
16miR_Mature_Clustering_CNMF00010
17miR_Mature_Clustering_Consensus_Plus00010
18miR_Mature_Preprocess00010
19mRNA_lincRNA_Clustering_Consensus_Plus00010
20mRNA_lincRNA_CNMF00010
21mRNA_Preprocess00010
22mRNA_protein_coding_Clustering_CNMF00010
23mRNA_protein_coding_Clustering_Consensus_Plus00010
24Mutation_CoOccurrence10000
25Pathway_GSEA_mRNA00001
26TR-Aggregate_AnalysisFeatures00010
27TR-Aggregate_Molecular_Subtype_Clusters00010
28TR-CopyNumber_Clustering_CNMF10000
29TR-CopyNumber_Clustering_CNMF_thresholded10000
30TR-CopyNumber_Gistic200010
31TR-CopyNumber_Gistic2_Postprocess_Focal00010
32TR-Correlate_Clinical_vs_CopyNumber_Arm00010
33TR-Correlate_Clinical_vs_CopyNumber_Focal00010
34TR-Correlate_Clinical_vs_Molecular_Subtypes00010
35TR-Correlate_Clinical_vs_mRNA00010
36TR-Correlate_CopyNumber_vs_miR10000
37TR-Correlate_CopyNumber_vs_mRNA00010
38TR-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
39TR-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
40TR-miR_FindDirectTargets10000
41TR-miR_Mature_Clustering_CNMF10000
42TR-miR_Mature_Clustering_Consensus_Plus10000
43TR-miR_Mature_Preprocess00010
44TR-mRNA_lincRNA_Clustering_Consensus_Plus00001
45TR-mRNA_lincRNA_CNMF00001
46TR-mRNA_Preprocess00010
47TR-mRNA_protein_coding_Clustering_CNMF00001
48TR-mRNA_protein_coding_Clustering_Consensus_Plus00001
49TR-Mutation_CoOccurrence00010
50TR-Pathway_GSEA_mRNA00001
51TP-Aggregate_AnalysisFeatures00010
52TP-Aggregate_Molecular_Subtype_Clusters00010
53TP-CopyNumber_Clustering_CNMF00010
54TP-CopyNumber_Clustering_CNMF_thresholded00010
55TP-CopyNumber_Gistic200010
56TP-CopyNumber_Gistic2_Postprocess_Focal00010
57TP-Correlate_Clinical_vs_CopyNumber_Arm00010
58TP-Correlate_Clinical_vs_CopyNumber_Focal00010
59TP-Correlate_Clinical_vs_Molecular_Subtypes00010
60TP-Correlate_Clinical_vs_mRNA00010
61TP-Correlate_CopyNumber_vs_miR00010
62TP-Correlate_CopyNumber_vs_mRNA00010
63TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
64TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
65TP-miR_FindDirectTargets00010
66TP-miR_Mature_Clustering_CNMF00010
67TP-miR_Mature_Clustering_Consensus_Plus00010
68TP-miR_Mature_Preprocess00010
69TP-mRNA_lincRNA_Clustering_Consensus_Plus00010
70TP-mRNA_lincRNA_CNMF00010
71TP-mRNA_Preprocess00010
72TP-mRNA_protein_coding_Clustering_CNMF00010
73TP-mRNA_protein_coding_Clustering_Consensus_Plus00010
74TP-Mutation_CoOccurrence00010
75TP-Pathway_GSEA_mRNA00001
76NB-Aggregate_AnalysisFeatures01000
77NB-Aggregate_Molecular_Subtype_Clusters10000
78NB-CopyNumber_Clustering_CNMF10000
79NB-CopyNumber_Clustering_CNMF_thresholded10000
80NB-CopyNumber_Gistic200001
81NB-CopyNumber_Gistic2_Postprocess_Focal10000
82NB-Correlate_Clinical_vs_CopyNumber_Arm10000
83NB-Correlate_Clinical_vs_CopyNumber_Focal10000
84NB-Correlate_Clinical_vs_Molecular_Subtypes10000
85NB-Correlate_Clinical_vs_mRNA10000
86NB-Correlate_CopyNumber_vs_miR10000
87NB-Correlate_CopyNumber_vs_mRNA10000
88NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
89NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
90NB-miR_FindDirectTargets10000
91NB-miR_Mature_Clustering_CNMF10000
92NB-miR_Mature_Clustering_Consensus_Plus10000
93NB-miR_Mature_Preprocess10000
94NB-mRNA_lincRNA_Clustering_Consensus_Plus10000
95NB-mRNA_lincRNA_CNMF10000
96NB-mRNA_Preprocess10000
97NB-mRNA_protein_coding_Clustering_CNMF10000
98NB-mRNA_protein_coding_Clustering_Consensus_Plus10000
99NB-Mutation_CoOccurrence10000
100NB-Pathway_GSEA_mRNA10000
101NBC-Aggregate_AnalysisFeatures01000
102NBC-Aggregate_Molecular_Subtype_Clusters10000
103NBC-CopyNumber_Clustering_CNMF10000
104NBC-CopyNumber_Clustering_CNMF_thresholded10000
105NBC-CopyNumber_Gistic200001
106NBC-CopyNumber_Gistic2_Postprocess_Focal10000
107NBC-Correlate_Clinical_vs_CopyNumber_Arm10000
108NBC-Correlate_Clinical_vs_CopyNumber_Focal10000
109NBC-Correlate_Clinical_vs_Molecular_Subtypes10000
110NBC-Correlate_Clinical_vs_mRNA10000
111NBC-Correlate_CopyNumber_vs_miR10000
112NBC-Correlate_CopyNumber_vs_mRNA10000
113NBC-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
114NBC-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
115NBC-miR_FindDirectTargets10000
116NBC-miR_Mature_Clustering_CNMF10000
117NBC-miR_Mature_Clustering_Consensus_Plus10000
118NBC-miR_Mature_Preprocess10000
119NBC-mRNA_lincRNA_Clustering_Consensus_Plus10000
120NBC-mRNA_lincRNA_CNMF10000
121NBC-mRNA_Preprocess10000
122NBC-mRNA_protein_coding_Clustering_CNMF10000
123NBC-mRNA_protein_coding_Clustering_Consensus_Plus10000
124NBC-Mutation_CoOccurrence10000
125NBC-Pathway_GSEA_mRNA10000
Total53206010

This table generated on Sat Nov 5 12:09:33 2016